Ignore:
Timestamp:
10/09/17 11:57:12 (7 years ago)
Author:
cetlod
Message:

Update NEMO card & driver

Location:
CONFIG/UNIFORM/v6/NEMO_v6/GENERAL/PARAM
Files:
1 added
6 edited

Legend:

Unmodified
Added
Removed
  • CONFIG/UNIFORM/v6/NEMO_v6/GENERAL/PARAM/file_def_nemo-lim3.xml

    r3178 r3408  
    2121      <file_group id="5d" output_freq="5d"  output_level="10" enabled=".TRUE."/>  <!-- 5d files -->      
    2222 
    23       <file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files --> 
     23      <file_group id="1m" output_freq="1mo" output_level="10" enabled="_AUTO_"> <!-- real monthly files --> 
    2424 
    2525       <file id="file19" name_suffix="_icemod" description="ice variables" enabled=".true." > 
  • CONFIG/UNIFORM/v6/NEMO_v6/GENERAL/PARAM/file_def_nemo-opa.xml

    r3178 r3408  
    2323      <file_group id="6h" output_freq="6h"  output_level="10" enabled=".TRUE."/> <!-- 6h files -->      
    2424     
    25       <file_group id="1d" output_freq="1d"  output_level="10" enabled=".TRUE.">  <!-- 5d files -->    
     25      <file_group id="1d" output_freq="1d"  output_level="10" enabled="_AUTO_">  <!-- 5d files -->    
    2626         
    2727        <file id="file1" name_suffix="_grid_T" description="ocean T grid variables" > 
     
    141141      </file_group>  
    142142 
    143       <file_group id="5d" output_freq="5d"  output_level="10" enabled=".TRUE.">  <!-- 5d files -->    
     143      <file_group id="5d" output_freq="5d"  output_level="10" enabled="_AUTO_">  <!-- 5d files -->    
    144144         
    145145        <file id="file4" name_suffix="_grid_T" description="ocean T grid variables" > 
     
    184184 
    185185 
    186       <file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files --> 
     186      <file_group id="1m" output_freq="1mo" output_level="10" enabled="_AUTO_"> <!-- real monthly files --> 
    187187 
    188188        <file id="file8" name_suffix="_grid_T" > 
     
    326326        </file> 
    327327 
    328         <file id="file12" name_suffix="_scalar" description="scalar variables" enabled=".true." > 
     328        <file id="file12" name_suffix="_scalar" description="scalar variables" > 
    329329 
    330330          <!-- Volume --> 
     
    379379        </file> 
    380380 
    381         <file id="file13" name_suffix="_diaptr" description="diaptr variables" enabled=".true." > 
     381        <file id="file13" name_suffix="_diaptr" description="diaptr variables" > 
    382382          <field field_ref="zomsfglo"          name="zomsfglo"  grid_ref="grid_ptr_W_3D" /> 
    383383          <field field_ref="zomsfatl"          name="zomsfatl"  grid_ref="grid_ptr_W_3D" /> 
     
    413413      <file_group id="6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files --> 
    414414 
    415       <file_group id="1y"  output_freq="1y" output_level="10" enabled=".TRUE."> <!-- real yearly files --> 
     415      <file_group id="1y"  output_freq="1y" output_level="10" enabled="_AUTO_"> <!-- real yearly files --> 
    416416 
    417417 
     
    505505        </file> 
    506506         
    507         <file id="file18" name_suffix="_diaptr" description="diaptr variables" enabled=".TRUE." > 
     507        <file id="file18" name_suffix="_diaptr" description="diaptr variables" > 
    508508          <field field_ref="zotemglo" grid_ref="grid_ptr_T_3D"  /> 
    509509          <field field_ref="zosalglo" grid_ref="grid_ptr_T_3D"  /> 
  • CONFIG/UNIFORM/v6/NEMO_v6/GENERAL/PARAM/file_def_nemo-pisces.xml

    r3178 r3408  
    2424      <file_group id="6h" output_freq="6h"  output_level="10" enabled=".TRUE."/> <!-- 6h files -->      
    2525     
    26       <file_group id="1d" output_freq="1d"  output_level="10" enabled=".TRUE.">  <!-- 5d files -->    
     26      <file_group id="1d" output_freq="1d"  output_level="10" enabled="_AUTO_">  <!-- 5d files -->    
    2727 
    2828        <file id="file20" name_suffix="_bioscalar" description="pisces sms variables" > 
     
    4444      <file_group id="5d" output_freq="5d"  output_level="10" enabled=".TRUE."/>  <!-- 5d files -->    
    4545         
    46       <file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files --> 
    47  
    48  
    49         <file id="file21" name_suffix="_ptrc_T" description="pisces sms variables" > 
     46      <file_group id="1m" output_freq="1mo" output_level="10" enabled="_AUTO_"> <!-- real monthly files --> 
     47 
     48       <file id="file21" name_suffix="_ptrc_T" description="pisces sms variables" > 
    5049          <field field_ref="DIC"       name="DIC"      operation="average" freq_op="1mo" > @DIC_E3T / @e3t </field> 
    5150          <field field_ref="Alkalini"  name="Alkalini" operation="average" freq_op="1mo" > @Alkalini_E3T / @e3t </field> 
    5251          <field field_ref="O2"        name="O2"       operation="average" freq_op="1mo" > @O2_E3T / @e3t </field> 
     52          <field field_ref="CaCO3"     name="CaCO3"    operation="average" freq_op="1mo" > @CaCO3_E3T / @e3t </field> 
    5353          <field field_ref="PO4"       name="PO4"      operation="average" freq_op="1mo" > @PO4_E3T / @e3t </field> 
     54          <field field_ref="POC"       name="POC"      operation="average" freq_op="1mo" > @POC_E3T / @e3t </field> 
    5455          <field field_ref="Si"        name="Si"       operation="average" freq_op="1mo" > @Si_E3T / @e3t </field> 
     56          <field field_ref="PHY"       name="PHY"      operation="average" freq_op="1mo" > @PHY_E3T / @e3t </field> 
     57          <field field_ref="ZOO"       name="ZOO"      operation="average" freq_op="1mo" > @ZOO_E3T / @e3t </field> 
     58          <field field_ref="DOC"       name="DOC"      operation="average" freq_op="1mo" > @DOC_E3T / @e3t </field> 
     59          <field field_ref="PHY2"      name="PHY2"     operation="average" freq_op="1mo" > @PHY2_E3T / @e3t </field> 
     60          <field field_ref="ZOO2"      name="ZOO2"     operation="average" freq_op="1mo" > @ZOO2_E3T / @e3t </field> 
     61          <field field_ref="DSi"       name="DSi"      operation="average" freq_op="1mo" > @DSi_E3T / @e3t </field> 
    5562          <field field_ref="Fer"       name="Fer"      operation="average" freq_op="1mo" > @Fer_E3T / @e3t </field> 
     63          <field field_ref="BFe"       name="BFe"      operation="average" freq_op="1mo" > @BFe_E3T / @e3t </field> 
     64          <field field_ref="GOC"       name="GOC"      operation="average" freq_op="1mo" > @GOC_E3T / @e3t </field> 
     65          <field field_ref="SFe"       name="SFe"      operation="average" freq_op="1mo" > @SFe_E3T / @e3t </field> 
     66          <field field_ref="DFe"       name="DFe"      operation="average" freq_op="1mo" > @DFe_E3T / @e3t </field> 
     67          <field field_ref="GSi"       name="GSi"      operation="average" freq_op="1mo" > @GSi_E3T / @e3t </field> 
     68          <field field_ref="NFe"       name="NFe"      operation="average" freq_op="1mo" > @NFe_E3T / @e3t </field> 
    5669          <field field_ref="NCHL"      name="NCHL"     operation="average" freq_op="1mo" > @NCHL_E3T / @e3t </field> 
    5770          <field field_ref="DCHL"      name="DCHL"     operation="average" freq_op="1mo" > @DCHL_E3T / @e3t </field> 
    5871          <field field_ref="NO3"       name="NO3"      operation="average" freq_op="1mo" > @NO3_E3T / @e3t </field> 
    59        </file> 
    60  
    61        <file id="file22" name_suffix="_diad_T" description="additional pisces diagnostics" > 
    62          <field field_ref="Cflx"      name="Cflx"    /> 
    63          <field field_ref="Dpco2"     name="Dpco2"   /> 
    64          <field field_ref="PAR"       name="PAR"   /> 
    65          <field field_ref="PARDM"     name="PARDM"  /> 
    66          <field field_ref="TPP"       name="TPP"  /> 
    67          <field field_ref="INTPP"     name="INTPP"  /> 
    68          <field field_ref="EPC100"    name="EPC100"  /> 
    69        </file> 
     72          <field field_ref="NH4"       name="NH4"      operation="average" freq_op="1mo" > @NH4_E3T / @e3t </field> 
     73    </file> 
     74 
     75   <file id="file22" name_suffix="_diad_T" description="additional pisces diagnostics" > 
     76       <field field_ref="PH"         name="PH" /> 
     77       <field field_ref="PAR"        name="PAR"   /> 
     78       <field field_ref="PARDM"      name="PARDM"   /> 
     79       <field field_ref="Cflx"       name="Cflx"  /> 
     80        <field field_ref="Oflx"      name="Oflx"  /> 
     81       <field field_ref="Dpco2"      name="Dpco2"   /> 
     82       <field field_ref="Dpo2"       name="Dpo2"   /> 
     83        <field field_ref="Heup"      name="Heup"  /> 
     84        <field field_ref="Irondep"   name="Irondep"  /> 
     85        <field field_ref="Ironsed"   name="Ironsed"  /> 
     86        <field field_ref="Nfix"      name="Nfix"  /> 
     87        <field field_ref="LNnut"     name="LNnut"  /> 
     88        <field field_ref="LDnut"     name="LDnut"  /> 
     89        <field field_ref="LNFe"      name="LNFe"  /> 
     90        <field field_ref="LDFe"      name="LDFe"  /> 
     91        <field field_ref="LNlight"   name="LNlight"  /> 
     92        <field field_ref="LDlight"   name="LDlight"  /> 
     93        <field field_ref="TPP"       name="TPP"  /> 
     94       <field field_ref="TPNEW"      name="TPNEW"  /> 
     95        <field field_ref="EPC100"    name="EPC100"  /> 
     96        <field field_ref="EPFE100"   name="EPFE100"  /> 
     97        <field field_ref="EPSI100"   name="EPSI100"  /> 
     98        <field field_ref="EPCAL100"  name="EPCAL100"  /> 
     99        <field field_ref="xfracal"   name="xfracal"  /> 
     100    </file> 
     101 
    70102 
    71103      <file id="file23" name_suffix="_bioscalar" description="pisces sms variables" > 
     
    92124      <file_group id="6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files --> 
    93125 
    94       <file_group id="1y"  output_freq="1y" output_level="10" enabled=".TRUE."> <!-- real yearly files --> 
     126      <file_group id="1y"  output_freq="1y" output_level="10" enabled="_AUTO_"> <!-- real yearly files --> 
    95127 
    96128  
     
    149181    </file> 
    150182 
     183      <file id="file26" name_suffix="_bioscalar" description="pisces sms variables" > 
     184          <field field_ref="tdenit"   name="tdenit"   grid_ref="grid_1point" unit="TgN/yr" operation="instant" > tdenit * 14. * 86400. * 365. / 1e12 </field> 
     185          <field field_ref="tnfix"    name="tnfix"    grid_ref="grid_1point" unit="TgN/yr" operation="instant" > tnfix * 14. * 86400. * 365. / 1e12 </field> 
     186          <field field_ref="tcflx"    name="tcflx"    grid_ref="grid_1point" unit="PgC/yr" operation="instant" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field> 
     187          <field field_ref="tcflxcum" name="tcflxcum" grid_ref="grid_1point" unit="PgC"    operation="instant" > tcflxcum * -1. * 12. / 1e15 </field> 
     188          <field field_ref="tcexp"    name="tcexp"    grid_ref="grid_1point" unit="PgC/yr" operation="instant" > tcexp * 12. * 86400. * 365. / 1e15 </field> 
     189          <field field_ref="tintpp"   name="tintpp"   grid_ref="grid_1point" unit="PgC/yr" operation="instant" > tintpp * 12. * 86400. * 365. / 1e15 </field> 
     190          <field field_ref="pno3tot"  name="pno3tot"  grid_ref="grid_1point" unit="umolN"  operation="instant" > pno3tot * 16. / 122. * 1e6 </field> 
     191          <field field_ref="ppo4tot"  name="ppo4tot"  grid_ref="grid_1point" unit="umolP"  operation="instant" > ppo4tot * 1. / 122. * 1e6 </field> 
     192          <field field_ref="psiltot"  name="psiltot"  grid_ref="grid_1point" unit="umolC"  operation="instant" > psiltot * 1e6  </field> 
     193          <field field_ref="palktot"  name="palktot"  grid_ref="grid_1point" unit="umolC"  operation="instant" > palktot * 1e6  </field> 
     194          <field field_ref="pfertot"  name="pfertot"  grid_ref="grid_1point" unit="nmolFe" operation="instant" > pfertot * 1e9  </field> 
     195    </file> 
     196 
     197       <file id="file27" name_suffix="_Age" description="Age Inert tracer" > 
     198          <field field_ref="Age"       name="Age"      operation="average" freq_op="1y" > @Age_E3T / @e3t </field> 
     199      </file> 
     200 
    151201      </file_group> 
    152202 
  • CONFIG/UNIFORM/v6/NEMO_v6/GENERAL/PARAM/namelist_ORCA1clim_cfg

    r3203 r3408  
    302302&namzdf_tke    !   turbulent eddy kinetic dependent vertical diffusion  ("key_zdftke") 
    303303!----------------------------------------------------------------------- 
     304  nn_etau     = 0         !  penetration of tke below the mixed layer (ML) due to internal & intertial waves 
     305                          !    = 0 no penetration 
     306                          !    = 1 add a tke source below the ML 
     307                          !    = 2 add a tke source just at the base of the ML 
     308                          !    = 3 as = 1 applied on HF part of the stress    ("key_oasis3") 
     309  nn_mxl0     = 2         ! type of scaling under sea-ice 
     310                          !    = 0 no scaling under sea-ice 
     311                          !    = 1 scaling with constant sea-ice thickness 
     312                          !    = 2  scaling with mean sea-ice thickness 
     313                          !    = 3  scaling with maximum sea-ice thickness 
     314  rn_hice    = 10.        ! max constant ice thickness value when scaling under sea-ice ( nn_mxl0=1) 
     315  ln_lc      = .true.     !  Langmuir cell parameterisation (Axell 2002) 
     316  rn_lc      =  0.20      !  coef. associated to Langmuir cells 
    304317/ 
    305318!----------------------------------------------------------------------- 
     
    325338&nammpp        !   Massively Parallel Processing                        ("key_mpp_mpi) 
    326339!----------------------------------------------------------------------- 
    327    ln_nnogather=  .true.  ! 
    328    jpni        =    16    !  jpni   number of processors following i (set automatically if < 1) 
    329    jpnj        =    31  !  jpnj   number of processors following j (set automatically if < 1) 
    330    jpnij       =   496    !  jpnij  number of local domains (set automatically if < 1) 
     340   ln_nnogather=  .true.   ! 
     341   jpni        =   20      !  jpni   number of processors following i (set automatically if < 1) 
     342   jpnj        =   24      !  jpnj   number of processors following j (set automatically if < 1) 
     343   jpnij       =  357      !  jpnij  number of local domains (set automatically if < 1), 357 for eORCA1/IPSLCM6-LR 
    331344/ 
    332345!----------------------------------------------------------------------- 
  • CONFIG/UNIFORM/v6/NEMO_v6/GENERAL/PARAM/namelist_ORCA1ia_cfg

    r3203 r3408  
    303303&namzdf_tke    !   turbulent eddy kinetic dependent vertical diffusion  ("key_zdftke") 
    304304!----------------------------------------------------------------------- 
     305  nn_etau     = 0         !  penetration of tke below the mixed layer (ML) due to internal & intertial waves 
     306                          !    = 0 no penetration 
     307                          !    = 1 add a tke source below the ML 
     308                          !    = 2 add a tke source just at the base of the ML 
     309                          !    = 3 as = 1 applied on HF part of the stress    ("key_oasis3") 
     310  nn_mxl0     = 2         ! type of scaling under sea-ice 
     311                          !    = 0 no scaling under sea-ice 
     312                          !    = 1 scaling with constant sea-ice thickness 
     313                          !    = 2  scaling with mean sea-ice thickness 
     314                          !    = 3  scaling with maximum sea-ice thickness 
     315  rn_hice    = 10.        ! max constant ice thickness value when scaling under sea-ice ( nn_mxl0=1) 
     316  ln_lc      = .true.     !  Langmuir cell parameterisation (Axell 2002) 
     317  rn_lc      =  0.20      !  coef. associated to Langmuir cells 
    305318/ 
    306319!----------------------------------------------------------------------- 
     
    326339&nammpp        !   Massively Parallel Processing                        ("key_mpp_mpi) 
    327340!----------------------------------------------------------------------- 
    328    ln_nnogather=  .true.  ! 
    329    jpni        =    16    !  jpni   number of processors following i (set automatically if < 1) 
    330    jpnj        =    31  !  jpnj   number of processors following j (set automatically if < 1) 
    331    jpnij       =   496    !  jpnij  number of local domains (set automatically if < 1) 
     341   ln_nnogather=  .true.   ! 
     342   jpni        =   20      !  jpni   number of processors following i (set automatically if < 1) 
     343   jpnj        =   24      !  jpnj   number of processors following j (set automatically if < 1) 
     344   jpnij       =  357      !  jpnij  number of local domains (set automatically if < 1), 357 for eORCA1/IPSLCM6-LR 
    332345/ 
    333346!----------------------------------------------------------------------- 
  • CONFIG/UNIFORM/v6/NEMO_v6/GENERAL/PARAM/namelist_pisces_cfg

    r3203 r3408  
    55&nampisext     !   air-sea exchange 
    66!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 
     7   atcco2     =  _AUTO_: DEFAULT=287.    ! Constant value atmospheric pCO2 - ln_co2int = F 
    78/ 
    89!''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 
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