Changeset 3542

Timestamp:

01/23/18 14:50:55 (6 years ago)

Author:

acosce

Message:

update LMDZORINCA config to version 6.0.14

Location:

CONFIG/UNIFORM/v6/LMDZORINCA_v6

Files:

• AA_make (modified) (1 diff)
• EXPERIMENTS/LMDZ/CREATE_amip/COMP/lmdz.card (modified) (1 diff)
• EXPERIMENTS/LMDZ/CREATE_amip/config.card (modified) (1 diff)
• EXPERIMENTS/LMDZOR/amip/COMP/lmdz.card (modified) (4 diffs)
• EXPERIMENTS/LMDZOR/amip/COMP/orchidee.card (modified) (3 diffs)
• EXPERIMENTS/LMDZOR/amip/COMP/stomate.card (modified) (1 diff)
• EXPERIMENTS/LMDZOR/amip/config.card (modified) (1 diff)
• EXPERIMENTS/LMDZOR/clim_360d/COMP/lmdz.card (modified) (3 diffs)
• EXPERIMENTS/LMDZOR/clim_360d/COMP/orchidee.card (modified) (3 diffs)
• EXPERIMENTS/LMDZOR/clim_360d/COMP/stomate.card (modified) (1 diff)
• EXPERIMENTS/LMDZOR/clim_pdControl/COMP/lmdz.card (modified) (3 diffs)
• EXPERIMENTS/LMDZOR/clim_pdControl/COMP/orchidee.card (modified) (3 diffs)
• EXPERIMENTS/LMDZOR/clim_pdControl/COMP/stomate.card (modified) (1 diff)
• EXPERIMENTS/LMDZORINCA/AER/COMP/orchidee.card (modified) (5 diffs)
• EXPERIMENTS/LMDZORINCA/AER_pdControl/COMP/lmdz.card (modified) (3 diffs)
• EXPERIMENTS/LMDZORINCA/AER_pdControl/COMP/orchidee.card (modified) (3 diffs)
• EXPERIMENTS/LMDZORINCA/AER_pdControl/COMP/stomate.card (modified) (1 diff)
• EXPERIMENTS/LMDZORINCA/CREATE_erai/COMP/lmdz.card (modified) (1 diff)
• EXPERIMENTS/LMDZORINCA/DUSS/COMP/orchidee.card (modified) (5 diffs)
• EXPERIMENTS/LMDZORINCA/GES/COMP/orchidee.card (modified) (5 diffs)
• EXPERIMENTS/LMDZORINCA/NMHC/COMP/orchidee.card (modified) (5 diffs)
• EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/orchidee.card (modified) (5 diffs)
• EXPERIMENTS/LMDZORINCA/NMHC_AER_S/COMP/orchidee.card (modified) (5 diffs)
• GENERAL/DRIVER/lmdz.driver (modified) (3 diffs)
• GENERAL/DRIVER/orchidee.driver (modified) (1 diff)
• GENERAL/DRIVER/stomate.driver (modified) (1 diff)
• GENERAL/PARAM/config.def_actuel (modified) (1 diff)
• GENERAL/PARAM/config.def_annuel (modified) (2 diffs)
• GENERAL/PARAM/config.def_preind (modified) (1 diff)
• GENERAL/PARAM/iodef.xml (modified) (1 diff)
• GENERAL/PARAM/orchidee.def_CWRR (modified) (6 diffs)
• GENERAL/PARAM/orchidee.def_Choi (modified) (1 diff)
• GENERAL/PARAM/physiq.def_NPv6.0.11 (modified) (2 diffs)
• GENERAL/PARAM/run.def (modified) (1 diff)
• GENERAL/POST/monitoring01_lmdz.cfg (modified) (3 diffs)
• GENERAL/POST/monitoring01_stomate.cfg (modified) (1 diff)

CONFIG/UNIFORM/v6/LMDZORINCA_v6/AA_make

@@ -117 +117 @@
         (cd  ../../modeles/INCA ; ./makeinca_fcm -clean )
 
+clean_inca : 
+        (cd  ../../modeles/INCA ; ./makeinca_fcm -clean )
+
+clean_lmdz : 
+        (rm -rf $(LIBDIR)/* ; rm -rf ../../modeles/LMDZ/libo/* ../../modeles/LMDZ/.lock ; )

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZ/CREATE_amip/COMP/lmdz.card

@@ -58 +58 @@
 
 [OutputText]
-List=   (physiq.def, gcm.def, vert.def, run.def, config.def, traceur.def, guide.def,out_create_etat0_limit.e.err, out_create_etat0_limit.e.out)
+List=   (physiq.def, gcm.def, vert.def, run.def, config.def, traceur.def, guide.def,out_create_etat0_limit.e.err.*, out_create_etat0_limit.e.out.*)
 
 [OutputFiles]

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZ/CREATE_amip/config.card

@@ -16 +16 @@
 #============================
 #D-- leap, noleap, 360d
-CalendarType=noleap
+CalendarType=leap
 #D-- Begin and end of job 
 #D-- "YYYY-MM-DD"

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/amip/COMP/lmdz.card

@@ -10 +10 @@
 # LMDZ_Physics=NPv6.0.7 for new physics to be used with LMDZ5/trunk revision 2720 or later
 # LMDZ_Physics=NPv6.0.8 for new physics to be used with LMDZ5/trunk revision 2739 or later
-LMDZ_Physics=NPv6.0.12
+LMDZ_Physics=NPv6.0.14ttop
 
 # Set ConfType to choose parameters for aerosols, solar and green house gazes.
@@ -55 +55 @@
 
 [BoundaryFiles]
-## To be used for IPSLCM6.0.12 when ready
-##List=   (${R_IN}/ATM/AEROSOLS/CMIP6/v0/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/aerosols${year}_from_inca_.nc,              aerosols${year}.nc),\
-List=   (${R_IN}/ATM/LIMIT/AMIP.v20170419/interpol/${RESOL_ATM_XY}_eORCA1.2_365d/limit_${year}.nc, limit.nc),\
-        (${R_IN}/ATM/${RESOL_ATM}/AR5/HISTORIQUE/aerosols_11YearsClim_${year}_v5.nc,              aerosols${year}.nc),\
+# With CMIP6 aerosols version 1
+List=   (${R_IN}/ATM/LIMIT/AMIP.v20170419/interpol/${RESOL_ATM_XY}_eORCA1.2_gregorian/limit_${year}.nc, limit.nc),\
+        (${R_IN}/ATM/AEROSOLS/CMIP6/v1/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/aerosols${year}_from_inca.nc,              aerosols${year}.nc),\
         (${R_IN}/ATM/OZONE/UReading_2016/3D_14Fields/${RESOL_ATM_3D}/climoz_LMDZ_${year}.nc, climoz_LMDZ.nc),\
-        (${R_IN}/ATM/SOLAR/CMIP6/v3.1/Historical/solarforcing_daily_3.1_6bands_${year}.nc,        solarforcing.nc),\
-        (${R_IN}/ATM/STRATAERO/CMIP6/v1/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/taulwstrat.2D.${year}.nc, taulwstrat.2D.nc),\
-        (${R_IN}/ATM/STRATAERO/CMIP6/v1/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/tauswstrat.2D.${year}.nc, tauswstrat.2D.nc)
+        (${R_IN}/ATM/SOLAR/CMIP6/v3.1corr/Historical/solarforcing_v3.1_daily_6bands_${year}.nc,        solarforcing.nc),\
+        (${R_IN}/ATM/STRATAERO/CMIP6/v3/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/taulwstrat.2D.${year}.nc, taulwstrat.2D.nc),\
+        (${R_IN}/ATM/STRATAERO/CMIP6/v3/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/tauswstrat.2D.${year}.nc, tauswstrat.2D.nc)
 
 # Note: the SOLARANDVOLCANOES.txt is only used for LMDZ_Physics=AP and NPv3.2 (if ok_suntime_rrtm=n)
@@ -71 +70 @@
             (${R_IN}/ATM/GHG/CMIP6/historical/CFC12eq_CMIP6_0000_2014.txt, CFC12.txt),\
             (${R_IN}/ATM/IPCC_AR5/HISTORIQUE/SOLARANDVOLCANOES_1610_2008.txt, SOLARANDVOLCANOES.txt),\
-            (${R_IN}/ATM/${RESOL_ATM}/AR5/HISTORIQUE/aerosols_11YearsClim_1855_v5.nc, aerosols.nat.nc)
-#           (${R_IN}/ATM/AEROSOLS/CMIP6/v0/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/forcagelmdz_picontrol.nc,    aerosols.nat.nc)
-# To be used for IPSLCM6.0.12 when ready
+            (${R_IN}/ATM/AEROSOLS/CMIP6/v1/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/aerosols1850_from_inca.nc, aerosols.nat.nc)
 
 [SmoothFiles]
@@ -128 +125 @@
 Patches= ()
 GatherWithInternal = (lon, lat, presnivs, time_counter, time_centered, time_centered_bounds, aire)
-TimeSeriesVars2D = (bils, cldh, cldl, cldm, cldq, cldt, evap, flat, ftime_con, iwp, lwp, LWdnSFC, LWdnSFCclr, LWupSFC, LWupSFCclr, LWdn200, LWdn200clr, LWup200, LWup200clr, precip, prw, pluc, psol, q2m, rh2m, sens, sicf, slp, snow, soll0, soll, sols0, sols, SWdnSFC, SWupSFC, SWup200, SWdnTOA, SWupTOA, SWdn200, SWdnSFCclr, SWupSFCclr, SWupTOAclr, t2m, ave_t2m_daily_max, ave_t2m_daily_min, taux, taux_ter, taux_sic, taux_lic, taux_oce, tauy, tauy_ter, tauy_sic, tauy_lic, tauy_oce, lat_ter, lat_sic, lat_lic, lat_oce, nettop, pbase, ptop, topl0, topl, tops0, tops, topswad, topswai, tsol, tsol_ter, tsol_lic, tsol_oce, tsol_sic , u10m, u500, v10m, v500, w500, pourc_ter, pourc_oce, pourc_sic, pourc_lic, wind10m, od550aer, od550lt1aer, od550_STRAT, loadoa, loadbc, loadso4, loaddust, loadss, sconcoa, sconcbc, sconcso4, sconcdust, sconcss, reffclwtop, cldncl, swtoaas_ant, swtoacs_ant, swtoacf_ant, swsrfas_ant, swsrfcs_ant, swsrfcf_ant, swtoaas_nat, swtoacs_nat, swtoacf_nat, swsrfas_nat, swsrfcs_nat, swsrfcf_nat, solswai, solswad, swtoacf_zero, swsrfcf_zero, R_ecc, R_peri, R_incl, solaire, rsun1, co2_ppm, CH4_ppb, N2O_ppb, CFC11_ppt, CFC12_ppt)
+TimeSeriesVars2D = (bils, cldh, cldl, cldm, cldq, cldt, evap, flat, ftime_con, iwp, lwp, LWdnSFC, LWdnSFCclr, LWupSFC, LWupSFCclr, LWdn200, LWdn200clr, LWup200, LWup200clr, precip, prw, pluc, psol, q2m, rh2m, sens, sicf, slp, snow, soll0, soll, sols0, sols, SWdnSFC, SWupSFC, SWup200, SWdnTOA, SWupTOA, SWdn200, SWdnSFCclr, SWupSFCclr, SWupTOAclr, t2m, ave_t2m_daily_max, ave_t2m_daily_min, taux, taux_ter, taux_sic, taux_lic, taux_oce, tauy, tauy_ter, tauy_sic, tauy_lic, tauy_oce, lat_ter, lat_sic, lat_lic, lat_oce, nettop, pbase, ptop, topl0, topl, tops0, tops, topswad, topswai, tsol, tsol_ter, tsol_lic, tsol_oce, tsol_sic , u10m, u500, v10m, v500, w500, pourc_ter, pourc_oce, pourc_sic, pourc_lic, wind10m, od550aer, od550lt1aer, od550_STRAT, loadoa, loadbc, loadso4, loaddust, loadss, sconcoa, sconcbc, sconcso4, sconcdust, sconcss, reffclwtop, cldncl, swtoaas_ant, swtoacs_ant, swtoacf_ant, swsrfas_ant, swsrfcs_ant, swsrfcf_ant, swtoaas_nat, swtoacs_nat, swtoacf_nat, swsrfas_nat, swsrfcs_nat, swsrfcf_nat, solswai, solswad, swtoacf_zero, swsrfcf_zero, R_ecc, R_peri, R_incl, solaire, rsun1, co2_ppm, CH4_ppb, N2O_ppb, CFC11_ppt, CFC12_ppt, colO3_strat, colO3_trop)
 ChunckJob2D = 100Y 
 TimeSeriesVars3D = (upwd, lwcon, iwcon, lcc3dcon, lcc3dstra, temp, theta, ovap, ovapinit, geop, vitu, vitv, vitw, pres, rneb, rnebcon, rhum, mc, paprs, scdnc, ec550aer, concoa, concbc, concso4, concss, concdust, reffclws, reffclwc, tnt, dtdyn, dtphy, dtlschr, tntr, tntscpbl, tnhus, dqdyn, dqvdf, tnhusscpbl, dqphy, evu, mcd)

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/amip/COMP/orchidee.card

@@ -19 +19 @@
 
 [BoundaryFiles]
-List= (${R_IN}/SRF/PFTMAPS/CMIP6/ESA-LUH2/historical/v1.2/withoutNoBio/13PFTmap_${year}_ESA_LUH2v2h_withoutNoBio_v1.2.nc, PFTmap.nc)
+List= (${R_IN}/SRF/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v1/PFTmap_${year}.nc, PFTmap.nc) ,\
+      (${R_IN}/SRF/WOODHARVEST/LUH2v2/historical/woodharvest_${year}.nc, woodharvest.nc)
 ListNonDel= ()
 
@@ -28 +29 @@
 List=   (${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\
+        (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_input_orchidee.xml, .) ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .)
@@ -35 +37 @@
 
 [OutputText]
-List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc)
+List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, file_def_input_orchidee.xml, river_desc.nc)
 
 [OutputFiles]

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/amip/COMP/stomate.card

@@ -32 +32 @@
 TimeSeriesVars2D = (T2M_MONTH,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE)
 ChunckJob2D = NONE
-TimeSeriesVars3D = (LAI,VEGET_MAX,NPP,GPP,HET_RESP,MAINT_RESP,GROWTH_RESP,AGE,HEIGHT,TOTAL_M,TOTAL_BM_LITTER,TOTAL_SOIL_CARB,CO2_FIRE,TOTAL_TURN)
+TimeSeriesVars3D = (LAI,VEGET_COV_MAX,NPP,GPP,HET_RESP,MAINT_RESP,GROWTH_RESP,AGE,HEIGHT,TOTAL_M,TOTAL_BM_LITTER,TOTAL_SOIL_CARB,CO2_FIRE,TOTAL_TURN)
 ChunckJob3D = NONE
 Seasonal = ON

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/amip/config.card

@@ -18 +18 @@
 #============================
 #-- leap, noleap, 360d
-CalendarType=noleap
+CalendarType=leap
 #-- Begin and end of job 
 #-- "YYYY-MM-DD"

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/clim_360d/COMP/lmdz.card

@@ -10 +10 @@
 # LMDZ_Physics=NPv6.0.7 for new physics to be used with LMDZ5/trunk revision 2720 or later
 # LMDZ_Physics=NPv6.0.8 for new physics to be used with LMDZ5/trunk revision 2739 or later
-LMDZ_Physics=NPv6.0.12
+LMDZ_Physics=NPv6.0.14ttop
 # Set ConfType to choose parameters for aerosols, solar and green house gazes.
 # The parameter file PARAM/config.def_$ConfType will be used.
@@ -56 +56 @@
 List=()
 ListNonDel= (${R_IN}/ATM/LIMIT/AMIP.v20170419/interpol/${RESOL_ATM_XY}_eORCA1.2_360d/limit_1979_2008_clim.nc, limit.nc),\
-            (${R_IN}/ATM/AEROSOLS/CMIP6/v0/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/aerosols1850_from_inca.nc,   aerosols.nat.nc),\
-            (${R_IN}/ATM/AEROSOLS/CMIP6/v0/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/aerosols1995_from_inca.nc,   aerosols1980.nc),\
+            (${R_IN}/ATM/AEROSOLS/CMIP6/v1/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/aerosols1850_from_inca.nc,   aerosols.nat.nc),\
+            (${R_IN}/ATM/AEROSOLS/CMIP6/v1/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/aerosols1995_from_inca.nc,   aerosols1980.nc),\
             (${R_IN}/ATM/OZONE/UReading_2016/3D_14Fields/${RESOL_ATM_3D}/climoz_LMDZ_1979_2008_clim.nc, climoz_LMDZ.nc),\
-            (${R_IN}/ATM/SOLAR/CMIP6/v3.1/Control/solarforcing_pdControl_6bands_ave_1980-2000_360days.nc, solarforcing.nc),\
-            (${R_IN}/ATM/STRATAERO/CMIP6/v1/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/taulwstrat.2D.ave.nc, taulwstrat.2D.nc),\
-            (${R_IN}/ATM/STRATAERO/CMIP6/v1/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/tauswstrat.2D.ave.nc, tauswstrat.2D.nc)
+            (${R_IN}/ATM/SOLAR/CMIP6/v3.1corr/Control/solarforcing_v3.1_pdControl_ave_6bands_360days.nc, solarforcing.nc),\
+            (${R_IN}/ATM/STRATAERO/CMIP6/v3/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/taulwstrat.2D.ave.nc, taulwstrat.2D.nc),\
+            (${R_IN}/ATM/STRATAERO/CMIP6/v3/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/tauswstrat.2D.ave.nc, tauswstrat.2D.nc)
 
 [SmoothFiles]
@@ -116 +116 @@
 Patches= ()
 GatherWithInternal = (lon, lat, presnivs, time_counter, time_centered, time_centered_bounds, aire)
-TimeSeriesVars2D = (bils, cldh, cldl, cldm, cldq, cldt, evap, flat, ftime_con, iwp, lwp, LWdnSFC, LWdnSFCclr, LWupSFC, LWupSFCclr, LWdn200, LWdn200clr, LWup200, LWup200clr, precip, prw, pluc, psol, q2m, rh2m, sens, sicf, slp, snow, soll0, soll, sols0, sols, SWdnSFC, SWupSFC, SWup200, SWdnTOA, SWupTOA, SWdn200, SWdnSFCclr, SWupSFCclr, SWupTOAclr, t2m, ave_t2m_daily_max, ave_t2m_daily_min, taux, taux_ter, taux_sic, taux_lic, taux_oce, tauy, tauy_ter, tauy_sic, tauy_lic, tauy_oce, lat_ter, lat_sic, lat_lic, lat_oce, nettop, pbase, ptop, topl0, topl, tops0, tops, topswad, topswai, tsol, tsol_ter, tsol_lic, tsol_oce, tsol_sic , u10m, u500, v10m, v500, w500, pourc_ter, pourc_oce, pourc_sic, pourc_lic, wind10m, od550aer, od550lt1aer, od550_STRAT, loadoa, loadbc, loadso4, loaddust, loadss, sconcoa, sconcbc, sconcso4, sconcdust, sconcss, reffclwtop, cldncl, swtoaas_ant, swtoacs_ant, swtoacf_ant, swsrfas_ant, swsrfcs_ant, swsrfcf_ant, swtoaas_nat, swtoacs_nat, swtoacf_nat, swsrfas_nat, swsrfcs_nat, swsrfcf_nat, solswai, solswad, swtoacf_zero, swsrfcf_zero, R_ecc, R_peri, R_incl, solaire, rsun1, co2_ppm, CH4_ppb, N2O_ppb, CFC11_ppt, CFC12_ppt)
+TimeSeriesVars2D = (bils, cldh, cldl, cldm, cldq, cldt, evap, flat, ftime_con, iwp, lwp, LWdnSFC, LWdnSFCclr, LWupSFC, LWupSFCclr, LWdn200, LWdn200clr, LWup200, LWup200clr, precip, prw, pluc, psol, q2m, rh2m, sens, sicf, slp, snow, soll0, soll, sols0, sols, SWdnSFC, SWupSFC, SWup200, SWdnTOA, SWupTOA, SWdn200, SWdnSFCclr, SWupSFCclr, SWupTOAclr, t2m, ave_t2m_daily_max, ave_t2m_daily_min, taux, taux_ter, taux_sic, taux_lic, taux_oce, tauy, tauy_ter, tauy_sic, tauy_lic, tauy_oce, lat_ter, lat_sic, lat_lic, lat_oce, nettop, pbase, ptop, topl0, topl, tops0, tops, topswad, topswai, tsol, tsol_ter, tsol_lic, tsol_oce, tsol_sic , u10m, u500, v10m, v500, w500, pourc_ter, pourc_oce, pourc_sic, pourc_lic, wind10m, od550aer, od550lt1aer, od550_STRAT, loadoa, loadbc, loadso4, loaddust, loadss, sconcoa, sconcbc, sconcso4, sconcdust, sconcss, reffclwtop, cldncl, swtoaas_ant, swtoacs_ant, swtoacf_ant, swsrfas_ant, swsrfcs_ant, swsrfcf_ant, swtoaas_nat, swtoacs_nat, swtoacf_nat, swsrfas_nat, swsrfcs_nat, swsrfcf_nat, solswai, solswad, swtoacf_zero, swsrfcf_zero, R_ecc, R_peri, R_incl, solaire, rsun1, co2_ppm, CH4_ppb, N2O_ppb, CFC11_ppt, CFC12_ppt, colO3_strat, colO3_trop)
 ChunckJob2D = 100Y 
 TimeSeriesVars3D = (upwd, lwcon, iwcon, lcc3dcon, lcc3dstra, temp, theta, ovap, ovapinit, geop, vitu, vitv, vitw, pres, rneb, rnebcon, rhum, mc, paprs, scdnc, ec550aer, concoa, concbc, concso4, concss, concdust, reffclws, reffclwc, tnt, dtdyn, dtphy, dtlschr, tntr, tntscpbl, tnhus, dqdyn, dqvdf, tnhusscpbl, dqphy, evu, mcd)

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/clim_360d/COMP/orchidee.card

@@ -16 +16 @@
         (${R_IN}/SRF/routing.nc, . ), \
         (${R_IN}/SRF/albedo/alb_bg_modisopt_2D_ESA_v2.nc, alb_bg.nc ), \
-        (${R_IN}/SRF/PFTMAPS/CMIP6/ESA-LUH2/historical/v1.2/withoutNoBio/13PFTmap_2000_ESA_LUH2v2h_withoutNoBio_v1.2.nc, PFTmap.nc),\
+        (${R_IN}/SRF/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v1/PFTmap_2000.nc, PFTmap.nc),\
+        (${R_IN}/SRF/WOODHARVEST/LUH2v2/historical/woodharvest_2000.nc, woodharvest.nc),\
         (${R_IN}/SRF/cartepente2d_15min.nc, .)
 
@@ -29 +30 @@
 List=   (${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\
+        (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_input_orchidee.xml, .) ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .)
@@ -36 +38 @@
 
 [OutputText]
-List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc)
+List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, file_def_input_orchidee.xml, river_desc.nc)
 
 [OutputFiles]

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/clim_360d/COMP/stomate.card

@@ -32 +32 @@
 TimeSeriesVars2D = (T2M_MONTH,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE)
 ChunckJob2D = NONE
-TimeSeriesVars3D = (LAI,VEGET_MAX,NPP,GPP,HET_RESP,MAINT_RESP,GROWTH_RESP,AGE,HEIGHT,TOTAL_M,TOTAL_BM_LITTER,TOTAL_SOIL_CARB,CO2_FIRE,TOTAL_TURN)
+TimeSeriesVars3D = (LAI,VEGET_COV_MAX,NPP,GPP,HET_RESP,MAINT_RESP,GROWTH_RESP,AGE,HEIGHT,TOTAL_M,TOTAL_BM_LITTER,TOTAL_SOIL_CARB,CO2_FIRE,TOTAL_TURN)
 ChunckJob3D = NONE
 Seasonal = ON

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/clim_pdControl/COMP/lmdz.card

@@ -10 +10 @@
 # LMDZ_Physics=NPv6.0.7 for new physics to be used with LMDZ5/trunk revision 2720 or later
 # LMDZ_Physics=NPv6.0.8 for new physics to be used with LMDZ5/trunk revision 2739 or later
-LMDZ_Physics=NPv6.0.12
+LMDZ_Physics=NPv6.0.14ttop
 
 # Set ConfType to choose parameters for aerosols, solar and green house gazes.
@@ -57 +57 @@
 List=()
 #
-# With CMIP6 aerosols version 0.
+# With CMIP6 aerosols version 1
 # With 3D ozone
-ListNonDel= (${R_IN}/ATM/AEROSOLS/CMIP6/v0/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/aerosols1850_from_inca.nc,   aerosols.nat.nc),\
-            (${R_IN}/ATM/AEROSOLS/CMIP6/v0/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/aerosols1995_from_inca.nc,   aerosols1980.nc),\
+ListNonDel= (${R_IN}/ATM/AEROSOLS/CMIP6/v1/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/aerosols1850_from_inca.nc,   aerosols.nat.nc),\
+            (${R_IN}/ATM/AEROSOLS/CMIP6/v1/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/aerosols1995_from_inca.nc,   aerosols1980.nc),\
             (${R_IN}/ATM/OZONE/UReading_2016/3D_14Fields/${RESOL_ATM_3D}/climoz_LMDZ_1979_2008_clim.nc, climoz_LMDZ.nc),\
             (${R_IN}/ATM/LIMIT/AMIP.v20170419/interpol/${RESOL_ATM_XY}_eORCA1.2_365d/limit_1979_2008_clim.nc, limit.nc),\
-            (${R_IN}/ATM/SOLAR/CMIP6/v3.1/Control/solarforcing_pdControl_6bands_ave_1980-2000_365days.nc, solarforcing.nc),\
-            (${R_IN}/ATM/STRATAERO/CMIP6/v1/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/taulwstrat.2D.ave.nc, taulwstrat.2D.nc),\
-            (${R_IN}/ATM/STRATAERO/CMIP6/v1/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/tauswstrat.2D.ave.nc, tauswstrat.2D.nc)
+            (${R_IN}/ATM/SOLAR/CMIP6/v3.1corr/Control/solarforcing_v3.1_pdControl_ave_6bands_365days.nc, solarforcing.nc),\
+            (${R_IN}/ATM/STRATAERO/CMIP6/v3/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/taulwstrat.2D.ave.nc, taulwstrat.2D.nc),\
+            (${R_IN}/ATM/STRATAERO/CMIP6/v3/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/tauswstrat.2D.ave.nc, tauswstrat.2D.nc)
 
 [SmoothFiles]
@@ -120 +120 @@
 Patches= ()
 GatherWithInternal = (lon, lat, presnivs, time_counter, time_centered, time_centered_bounds, aire)
-TimeSeriesVars2D = (bils, cldh, cldl, cldm, cldq, cldt, evap, flat, ftime_con, iwp, lwp, LWdnSFC, LWdnSFCclr, LWupSFC, LWupSFCclr, LWdn200, LWdn200clr, LWup200, LWup200clr, precip, prw, pluc, psol, q2m, rh2m, sens, sicf, slp, snow, soll0, soll, sols0, sols, SWdnSFC, SWupSFC, SWup200, SWdnTOA, SWupTOA, SWdn200, SWdnSFCclr, SWupSFCclr, SWupTOAclr, t2m, ave_t2m_daily_max, ave_t2m_daily_min, taux, taux_ter, taux_sic, taux_lic, taux_oce, tauy, tauy_ter, tauy_sic, tauy_lic, tauy_oce, lat_ter, lat_sic, lat_lic, lat_oce, nettop, pbase, ptop, topl0, topl, tops0, tops, topswad, topswai, tsol, tsol_ter, tsol_lic, tsol_oce, tsol_sic , u10m, u500, v10m, v500, w500, pourc_ter, pourc_oce, pourc_sic, pourc_lic, wind10m, od550aer, od550lt1aer, od550_STRAT, loadoa, loadbc, loadso4, loaddust, loadss, sconcoa, sconcbc, sconcso4, sconcdust, sconcss, reffclwtop, cldncl, swtoaas_ant, swtoacs_ant, swtoacf_ant, swsrfas_ant, swsrfcs_ant, swsrfcf_ant, swtoaas_nat, swtoacs_nat, swtoacf_nat, swsrfas_nat, swsrfcs_nat, swsrfcf_nat, solswai, solswad, swtoacf_zero, swsrfcf_zero, R_ecc, R_peri, R_incl, solaire, rsun1, co2_ppm, CH4_ppb, N2O_ppb, CFC11_ppt, CFC12_ppt)
+TimeSeriesVars2D = (bils, cldh, cldl, cldm, cldq, cldt, evap, flat, ftime_con, iwp, lwp, LWdnSFC, LWdnSFCclr, LWupSFC, LWupSFCclr, LWdn200, LWdn200clr, LWup200, LWup200clr, precip, prw, pluc, psol, q2m, rh2m, sens, sicf, slp, snow, soll0, soll, sols0, sols, SWdnSFC, SWupSFC, SWup200, SWdnTOA, SWupTOA, SWdn200, SWdnSFCclr, SWupSFCclr, SWupTOAclr, t2m, ave_t2m_daily_max, ave_t2m_daily_min, taux, taux_ter, taux_sic, taux_lic, taux_oce, tauy, tauy_ter, tauy_sic, tauy_lic, tauy_oce, lat_ter, lat_sic, lat_lic, lat_oce, nettop, pbase, ptop, topl0, topl, tops0, tops, topswad, topswai, tsol, tsol_ter, tsol_lic, tsol_oce, tsol_sic , u10m, u500, v10m, v500, w500, pourc_ter, pourc_oce, pourc_sic, pourc_lic, wind10m, od550aer, od550lt1aer, od550_STRAT, loadoa, loadbc, loadso4, loaddust, loadss, sconcoa, sconcbc, sconcso4, sconcdust, sconcss, reffclwtop, cldncl, swtoaas_ant, swtoacs_ant, swtoacf_ant, swsrfas_ant, swsrfcs_ant, swsrfcf_ant, swtoaas_nat, swtoacs_nat, swtoacf_nat, swsrfas_nat, swsrfcs_nat, swsrfcf_nat, solswai, solswad, swtoacf_zero, swsrfcf_zero, R_ecc, R_peri, R_incl, solaire, rsun1, co2_ppm, CH4_ppb, N2O_ppb, CFC11_ppt, CFC12_ppt, colO3_strat, colO3_trop)
 ChunckJob2D = 100Y 
 TimeSeriesVars3D = (upwd, lwcon, iwcon, lcc3dcon, lcc3dstra, temp, theta, ovap, ovapinit, geop, vitu, vitv, vitw, pres, rneb, rnebcon, rhum, mc, paprs, scdnc, ec550aer, concoa, concbc, concso4, concss, concdust, reffclws, reffclwc, tnt, dtdyn, dtphy, dtlschr, tntr, tntscpbl, tnhus, dqdyn, dqvdf, tnhusscpbl, dqphy, evu, mcd)

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/clim_pdControl/COMP/orchidee.card

@@ -16 +16 @@
         (${R_IN}/SRF/routing.nc, . ), \
         (${R_IN}/SRF/albedo/alb_bg_modisopt_2D_ESA_v2.nc, alb_bg.nc ), \
-        (${R_IN}/SRF/PFTMAPS/CMIP6/ESA-LUH2/historical/v1.2/withoutNoBio/13PFTmap_2000_ESA_LUH2v2h_withoutNoBio_v1.2.nc, PFTmap.nc),\
+        (${R_IN}/SRF/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v1/PFTmap_2000.nc, PFTmap.nc),\
+        (${R_IN}/SRF/WOODHARVEST/LUH2v2/historical/woodharvest_2000.nc, woodharvest.nc),\
         (${R_IN}/SRF/cartepente2d_15min.nc, .)
 
@@ -29 +30 @@
 List=   (${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\
+        (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_input_orchidee.xml, .) ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .)
@@ -36 +38 @@
 
 [OutputText]
-List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc)
+List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, file_def_input_orchidee.xml, river_desc.nc)
 
 [OutputFiles]

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/clim_pdControl/COMP/stomate.card

@@ -32 +32 @@
 TimeSeriesVars2D = (T2M_MONTH,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE)
 ChunckJob2D = NONE
-TimeSeriesVars3D = (LAI,VEGET_MAX,NPP,GPP,HET_RESP,MAINT_RESP,GROWTH_RESP,AGE,HEIGHT,TOTAL_M,TOTAL_BM_LITTER,TOTAL_SOIL_CARB,CO2_FIRE,TOTAL_TURN)
+TimeSeriesVars3D = (LAI,VEGET_COV_MAX,NPP,GPP,HET_RESP,MAINT_RESP,GROWTH_RESP,AGE,HEIGHT,TOTAL_M,TOTAL_BM_LITTER,TOTAL_SOIL_CARB,CO2_FIRE,TOTAL_TURN)
 ChunckJob3D = NONE
 Seasonal = ON

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/AER/COMP/orchidee.card

@@ -7 +7 @@
 # Sef DefSuffix=Choi (default) to activate default 2-layer Choisnel hydrology
 # Set DefSuffix=CWRR to activate 11-layer CWRR hydrology
-DefSuffix=Choi
+DefSuffix=CWRR
 
 VEGET_UPDATE=1Y
@@ -13 +13 @@
 [InitialStateFiles]
 List=   (${R_IN}/SRF/soils_param.nc,        . ), \
+        (${R_IN}/SRF/reftemp.nc, . ), \
         (${R_IN}/SRF/routing.nc,            . ), \
         (${R_IN}/SRF/albedo/alb_bg_modisopt_2D.nc, alb_bg.nc ), \
@@ -18 +19 @@
 
 [BoundaryFiles]
-List=(${R_IN}/SRF/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_${year}.nc, PFTmap.nc)
+List= (${R_IN}/SRF/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v1/PFTmap_${year}.nc, PFTmap.nc) ,\
+      (${R_IN}/SRF/WOODHARVEST/LUH2v2/historical/woodharvest_${year}.nc, woodharvest.nc)
 ListNonDel= ()
+
+
+# to decomment if we want to calcul bvoc - for this we need to activate CHEMISTRY_BVOC in orchidee.def_Choi
+#ListNonDel= (${R_IN}/SRF/chemistry/orchidee_fertilizer_1995.nc, .), \
+#            (${R_IN}/SRF/chemistry/orchidee_bbg_clim.nc, .)
 
 [SmoothFiles]
@@ -27 +34 @@
 List=   (${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\
+        (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_input_orchidee.xml, .) ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .)
@@ -34 +42 @@
 
 [OutputText]
-List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc)
+List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc, file_def_input_orchidee.xml)
 
 [OutputFiles]

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/AER_pdControl/COMP/lmdz.card

@@ -10 +10 @@
 # LMDZ_Physics=NPv6.0.7 for new physics to be used with LMDZ5/trunk revision 2720 or later
 # LMDZ_Physics=NPv6.0.8 for new physics to be used with LMDZ5/trunk revision 2739 or later
-LMDZ_Physics=NPv6.0.12
-#LMDZ_Physics=NPv6.0.12ttop
+LMDZ_Physics=NPv6.0.14ttop
 
 # Set ConfType to choose parameters for aerosols, solar and green house gazes.
@@ -57 +56 @@
 [BoundaryFiles]
 List=()
-ListNonDel= (/ccc/work/cont003/igcmg/igcmg/IGCM/ATM/LIMIT/AMIP.v20170419/interpol/144x142_eORCA1.2_360d/limit_2006.nc, limit.nc),\
+ListNonDel= (${R_IN}/ATM/LIMIT/AMIP.v20170419/interpol/${RESOL_ATM_XY}_eORCA1.2_360d/limit_1979_2008_clim.nc, limit.nc),\
             (${R_IN}/ATM/OZONE/UReading_2016/3D_14Fields/${RESOL_ATM_3D}/climoz_LMDZ_1979_2008_clim.nc, climoz_LMDZ.nc),\
-            (${R_IN}/ATM/SOLAR/CMIP6/v3.1/Control/solarforcing_pdControl_6bands_ave_1980-2000_360days.nc, solarforcing.nc),\
-            (${R_IN}/ATM/STRATAERO/CMIP6/v1/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/taulwstrat.2D.ave.nc, taulwstrat.2D.nc),\
-            (${R_IN}/ATM/STRATAERO/CMIP6/v1/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/tauswstrat.2D.ave.nc, tauswstrat.2D.nc)
+            (${R_IN}/ATM/SOLAR/CMIP6/v3.1corr/Control/solarforcing_v3.1_pdControl_ave_6bands_360days.nc, solarforcing.nc),\
+            (${R_IN}/ATM/STRATAERO/CMIP6/v3/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/taulwstrat.2D.ave.nc, taulwstrat.2D.nc),\
+            (${R_IN}/ATM/STRATAERO/CMIP6/v3/${RESOL_ATM_XY}/L${RESOL_ATM_Z}/tauswstrat.2D.ave.nc, tauswstrat.2D.nc)
 
 [SmoothFiles]
@@ -116 +115 @@
 Patches= ()
 GatherWithInternal = (lon, lat, presnivs, time_counter, time_centered, time_centered_bounds, aire)
-TimeSeriesVars2D = (bils, cldh, cldl, cldm, cldq, cldt, evap, flat, ftime_con, iwp, lwp, LWdnSFC, LWdnSFCclr, LWupSFC, LWupSFCclr, LWdn200, LWdn200clr, LWup200, LWup200clr, precip, prw, pluc, psol, q2m, rh2m, sens, sicf, slp, snow, soll0, soll, sols0, sols, SWdnSFC, SWupSFC, SWup200, SWdnTOA, SWupTOA, SWdn200, SWdnSFCclr, SWupSFCclr, SWupTOAclr, t2m, ave_t2m_daily_max, ave_t2m_daily_min, taux, taux_ter, taux_sic, taux_lic, taux_oce, tauy, tauy_ter, tauy_sic, tauy_lic, tauy_oce, lat_ter, lat_sic, lat_lic, lat_oce, nettop, pbase, ptop, topl0, topl, tops0, tops, topswad, topswai, tsol, tsol_ter, tsol_lic, tsol_oce, tsol_sic , u10m, u500, v10m, v500, w500, pourc_ter, pourc_oce, pourc_sic, pourc_lic, wind10m, od550aer, od550lt1aer, od550_STRAT, loadoa, loadbc, loadso4, loaddust, loadss, sconcoa, sconcbc, sconcso4, sconcdust, sconcss, reffclwtop, cldncl, swtoaas_ant, swtoacs_ant, swtoacf_ant, swsrfas_ant, swsrfcs_ant, swsrfcf_ant, swtoaas_nat, swtoacs_nat, swtoacf_nat, swsrfas_nat, swsrfcs_nat, swsrfcf_nat, solswai, solswad, swtoacf_zero, swsrfcf_zero, R_ecc, R_peri, R_incl, solaire, rsun1, co2_ppm, CH4_ppb, N2O_ppb, CFC11_ppt, CFC12_ppt)
+TimeSeriesVars2D = (bils, cldh, cldl, cldm, cldq, cldt, evap, flat, ftime_con, iwp, lwp, LWdnSFC, LWdnSFCclr, LWupSFC, LWupSFCclr, LWdn200, LWdn200clr, LWup200, LWup200clr, precip, prw, pluc, psol, q2m, rh2m, sens, sicf, slp, snow, soll0, soll, sols0, sols, SWdnSFC, SWupSFC, SWup200, SWdnTOA, SWupTOA, SWdn200, SWdnSFCclr, SWupSFCclr, SWupTOAclr, t2m, ave_t2m_daily_max, ave_t2m_daily_min, taux, taux_ter, taux_sic, taux_lic, taux_oce, tauy, tauy_ter, tauy_sic, tauy_lic, tauy_oce, lat_ter, lat_sic, lat_lic, lat_oce, nettop, pbase, ptop, topl0, topl, tops0, tops, topswad, topswai, tsol, tsol_ter, tsol_lic, tsol_oce, tsol_sic , u10m, u500, v10m, v500, w500, pourc_ter, pourc_oce, pourc_sic, pourc_lic, wind10m, od550aer, od550lt1aer, od550_STRAT, loadoa, loadbc, loadso4, loaddust, loadss, sconcoa, sconcbc, sconcso4, sconcdust, sconcss, reffclwtop, cldncl, swtoaas_ant, swtoacs_ant, swtoacf_ant, swsrfas_ant, swsrfcs_ant, swsrfcf_ant, swtoaas_nat, swtoacs_nat, swtoacf_nat, swsrfas_nat, swsrfcs_nat, swsrfcf_nat, solswai, solswad, swtoacf_zero, swsrfcf_zero, R_ecc, R_peri, R_incl, solaire, rsun1, co2_ppm, CH4_ppb, N2O_ppb, CFC11_ppt, CFC12_ppt, colO3_strat, colO3_trop)
 ChunckJob2D = 100Y 
 TimeSeriesVars3D = (upwd, lwcon, iwcon, lcc3dcon, lcc3dstra, temp, theta, ovap, ovapinit, geop, vitu, vitv, vitw, pres, rneb, rnebcon, rhum, mc, paprs, scdnc, ec550aer, concoa, concbc, concso4, concss, concdust, reffclws, reffclwc, tnt, dtdyn, dtphy, dtlschr, tntr, tntscpbl, tnhus, dqdyn, dqvdf, tnhusscpbl, dqphy, evu, mcd)

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/AER_pdControl/COMP/orchidee.card

@@ -16 +16 @@
         (${R_IN}/SRF/routing.nc, . ), \
         (${R_IN}/SRF/albedo/alb_bg_modisopt_2D_ESA_v2.nc, alb_bg.nc ), \
-        (${R_IN}/SRF/PFTMAPS/CMIP6/ESA-LUH2/historical/v1.2/withoutNoBio/13PFTmap_2000_ESA_LUH2v2h_withoutNoBio_v1.2.nc, PFTmap.nc),\
+        (${R_IN}/SRF/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v1/PFTmap_2000.nc, PFTmap.nc),\
+        (${R_IN}/SRF/WOODHARVEST/LUH2v2/historical/woodharvest_2000.nc, woodharvest.nc),\
         (${R_IN}/SRF/cartepente2d_15min.nc, .)
 
@@ -29 +30 @@
 List=   (${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\
+        (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_input_orchidee.xml, .) ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .)
@@ -36 +38 @@
 
 [OutputText]
-List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc)
+List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, file_def_input_orchidee.xml, river_desc.nc)
 
 [OutputFiles]

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/AER_pdControl/COMP/stomate.card

@@ -32 +32 @@
 TimeSeriesVars2D = (T2M_MONTH,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE)
 ChunckJob2D = NONE
-TimeSeriesVars3D = (LAI,VEGET_MAX,NPP,GPP,HET_RESP,MAINT_RESP,GROWTH_RESP,AGE,HEIGHT,TOTAL_M,TOTAL_BM_LITTER,TOTAL_SOIL_CARB,CO2_FIRE,TOTAL_TURN)
+TimeSeriesVars3D = (LAI,VEGET_COV_MAX,NPP,GPP,HET_RESP,MAINT_RESP,GROWTH_RESP,AGE,HEIGHT,TOTAL_M,TOTAL_BM_LITTER,TOTAL_SOIL_CARB,CO2_FIRE,TOTAL_TURN)
 ChunckJob3D = NONE
 Seasonal = ON

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/CREATE_erai/COMP/lmdz.card

@@ -57 +57 @@
 
 [OutputText]
-List=   (physiq.def, gcm.def, vert.def, run.def, config.def, traceur.def, guide.def,out_create_etat0_limit.e.err, out_create_etat0_limit.e.out)
+List=   (physiq.def, gcm.def, vert.def, run.def, config.def, traceur.def, guide.def,out_create_etat0_limit.e.err.*, out_create_etat0_limit.e.out.*)
 
 [OutputFiles]

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/DUSS/COMP/orchidee.card

@@ -7 +7 @@
 # Sef DefSuffix=Choi (default) to activate default 2-layer Choisnel hydrology
 # Set DefSuffix=CWRR to activate 11-layer CWRR hydrology
-DefSuffix=Choi
+DefSuffix=CWRR
 
 VEGET_UPDATE=1Y
@@ -13 +13 @@
 [InitialStateFiles]
 List=   (${R_IN}/SRF/soils_param.nc,        . ), \
+        (${R_IN}/SRF/reftemp.nc, . ), \
         (${R_IN}/SRF/routing.nc,            . ), \
         (${R_IN}/SRF/albedo/alb_bg_modisopt_2D.nc, alb_bg.nc ), \
@@ -18 +19 @@
 
 [BoundaryFiles]
-List=(${R_IN}/SRF/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_${year}.nc, PFTmap.nc)
+List= (${R_IN}/SRF/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v1/PFTmap_${year}.nc, PFTmap.nc) ,\
+      (${R_IN}/SRF/WOODHARVEST/LUH2v2/historical/woodharvest_${year}.nc, woodharvest.nc)
 ListNonDel= ()
+
 
 # to decomment if we want to calcul bvoc - for this we need to activate CHEMISTRY_BVOC in orchidee.def_Choi
@@ -31 +34 @@
 List=   (${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\
+        (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_input_orchidee.xml, .) ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .)
@@ -38 +42 @@
 
 [OutputText]
-List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc)
+List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc, file_def_input_orchidee.xml)
 
 [OutputFiles]

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/GES/COMP/orchidee.card

@@ -7 +7 @@
 # Sef DefSuffix=Choi (default) to activate default 2-layer Choisnel hydrology
 # Set DefSuffix=CWRR to activate 11-layer CWRR hydrology
-DefSuffix=Choi
+DefSuffix=CWRR
 
 VEGET_UPDATE=1Y
@@ -13 +13 @@
 [InitialStateFiles]
 List=   (${R_IN}/SRF/soils_param.nc,        . ), \
+        (${R_IN}/SRF/reftemp.nc, . ), \
         (${R_IN}/SRF/routing.nc,            . ), \
         (${R_IN}/SRF/albedo/alb_bg_modisopt_2D.nc, alb_bg.nc ), \
@@ -18 +19 @@
 
 [BoundaryFiles]
-List=(${R_IN}/SRF/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_${year}.nc, PFTmap.nc)
+List= (${R_IN}/SRF/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v1/PFTmap_${year}.nc, PFTmap.nc) ,\
+      (${R_IN}/SRF/WOODHARVEST/LUH2v2/historical/woodharvest_${year}.nc, woodharvest.nc)
 ListNonDel= ()
+
+
+# to decomment if we want to calcul bvoc - for this we need to activate CHEMISTRY_BVOC in orchidee.def_Choi
+#ListNonDel= (${R_IN}/SRF/chemistry/orchidee_fertilizer_1995.nc, .), \
+#            (${R_IN}/SRF/chemistry/orchidee_bbg_clim.nc, .)
 
 [SmoothFiles]
@@ -27 +34 @@
 List=   (${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\
+        (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_input_orchidee.xml, .) ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .)
@@ -34 +42 @@
 
 [OutputText]
-List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc)
+List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc, file_def_input_orchidee.xml)
 
 [OutputFiles]

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/NMHC/COMP/orchidee.card

@@ -7 +7 @@
 # Sef DefSuffix=Choi (default) to activate default 2-layer Choisnel hydrology
 # Set DefSuffix=CWRR to activate 11-layer CWRR hydrology
-DefSuffix=Choi
+DefSuffix=CWRR
 
 VEGET_UPDATE=1Y
@@ -13 +13 @@
 [InitialStateFiles]
 List=   (${R_IN}/SRF/soils_param.nc,        . ), \
+        (${R_IN}/SRF/reftemp.nc, . ), \
         (${R_IN}/SRF/routing.nc,            . ), \
         (${R_IN}/SRF/albedo/alb_bg_modisopt_2D.nc, alb_bg.nc ), \
@@ -18 +19 @@
 
 [BoundaryFiles]
-List=(${R_IN}/SRF/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_${year}.nc, PFTmap.nc)
+List= (${R_IN}/SRF/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v1/PFTmap_${year}.nc, PFTmap.nc) ,\
+      (${R_IN}/SRF/WOODHARVEST/LUH2v2/historical/woodharvest_${year}.nc, woodharvest.nc)
 ListNonDel= ()
+
+
+# to decomment if we want to calcul bvoc - for this we need to activate CHEMISTRY_BVOC in orchidee.def_Choi
+#ListNonDel= (${R_IN}/SRF/chemistry/orchidee_fertilizer_1995.nc, .), \
+#            (${R_IN}/SRF/chemistry/orchidee_bbg_clim.nc, .)
 
 [SmoothFiles]
@@ -27 +34 @@
 List=   (${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\
+        (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_input_orchidee.xml, .) ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .)
@@ -34 +42 @@
 
 [OutputText]
-List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc)
+List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc, file_def_input_orchidee.xml)
 
 [OutputFiles]

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/orchidee.card

@@ -7 +7 @@
 # Sef DefSuffix=Choi (default) to activate default 2-layer Choisnel hydrology
 # Set DefSuffix=CWRR to activate 11-layer CWRR hydrology
-DefSuffix=Choi
+DefSuffix=CWRR
 
 VEGET_UPDATE=1Y
@@ -13 +13 @@
 [InitialStateFiles]
 List=   (${R_IN}/SRF/soils_param.nc,        . ), \
+        (${R_IN}/SRF/reftemp.nc, . ), \
         (${R_IN}/SRF/routing.nc,            . ), \
         (${R_IN}/SRF/albedo/alb_bg_modisopt_2D.nc, alb_bg.nc ), \
@@ -18 +19 @@
 
 [BoundaryFiles]
-List=(${R_IN}/SRF/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_${year}.nc, PFTmap.nc)
+List= (${R_IN}/SRF/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v1/PFTmap_${year}.nc, PFTmap.nc) ,\
+      (${R_IN}/SRF/WOODHARVEST/LUH2v2/historical/woodharvest_${year}.nc, woodharvest.nc)
 ListNonDel= ()
+
 
 # to decomment if we want to calcul bvoc - for this we need to activate CHEMISTRY_BVOC in orchidee.def_Choi
@@ -31 +34 @@
 List=   (${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\
+        (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_input_orchidee.xml, .) ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .)
@@ -38 +42 @@
 
 [OutputText]
-List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc)
+List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc, file_def_input_orchidee.xml)
 
 [OutputFiles]

CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/NMHC_AER_S/COMP/orchidee.card

@@ -7 +7 @@
 # Sef DefSuffix=Choi (default) to activate default 2-layer Choisnel hydrology
 # Set DefSuffix=CWRR to activate 11-layer CWRR hydrology
-DefSuffix=Choi
+DefSuffix=CWRR
 
 VEGET_UPDATE=1Y
@@ -13 +13 @@
 [InitialStateFiles]
 List=   (${R_IN}/SRF/soils_param.nc,        . ), \
+        (${R_IN}/SRF/reftemp.nc, . ), \
         (${R_IN}/SRF/routing.nc,            . ), \
         (${R_IN}/SRF/albedo/alb_bg_modisopt_2D.nc, alb_bg.nc ), \
@@ -18 +19 @@
 
 [BoundaryFiles]
-List=(${R_IN}/SRF/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_${year}.nc, PFTmap.nc)
+List= (${R_IN}/SRF/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v1/PFTmap_${year}.nc, PFTmap.nc) ,\
+      (${R_IN}/SRF/WOODHARVEST/LUH2v2/historical/woodharvest_${year}.nc, woodharvest.nc)
 ListNonDel= ()
+
 
 # to decomment if we want to calcul bvoc - for this we need to activate CHEMISTRY_BVOC in orchidee.def_Choi
@@ -31 +34 @@
 List=   (${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\
+        (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_input_orchidee.xml, .) ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\
         (${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .)
@@ -38 +42 @@
 
 [OutputText]
-List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc)
+List=   (out_orchidee, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc, file_def_input_orchidee.xml)
 
 [OutputFiles]

CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/DRIVER/lmdz.driver

@@ -53 +53 @@
     ok_hf3hm=.FALSE.
     ok_stn=.FALSE.
+
 
     case ${config_UserChoices_PeriodLength} in
@@ -80 +81 @@
     done
 
-    ##  Read LMDZ_COSP_OK in lmdz.card
+    if [ X"$( echo ${config_UserChoices_ExpType} | grep CMIP6 )" != "X" ] ; then
+        ok_mensuel=.FALSE.
+        ok_journe=.FALSE.
+        ok_hf=.FALSE.
+        ok_hf3h=.FALSE.
+        ok_hf3hm=.FALSE.
+        ok_stn=.FALSE.
+    fi
+
+##  Read LMDZ_COSP_OK in lmdz.card
     if [ X${lmdz_UserChoices_LMDZ_COSP_OK} = Xy ] ; then
         ##  LMDZ_COSP_OK=y, now read all other COSP variables
@@ -456 +466 @@
     #  <context id="LMDZ" src="./context_lmdz.xml"/>
     echo '<context id="LMDZ" src="./context_lmdz.xml"/>' > add.tmp
+    if [ X"$( echo ${config_UserChoices_ExpType} | grep CMIP6 )" != "X" ] ; then
+        echo '<context id="LMDZ" src="./ping_lmdz.xml"/>' >> add.tmp
+        echo '<context id="LMDZ" src="./dr2xml_lmdz.xml"/>' >> add.tmp
+    fi
     cp iodef.xml iodef.xml.tmp
     sed -e "/COMPONENT CONTEXT/r add.tmp" iodef.xml.tmp > iodef.xml

CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/DRIVER/orchidee.driver

@@ -135 +135 @@
     #  <context id="orchidee" src="./context_orchidee.xml"/>
     echo '<context id="orchidee" src="./context_orchidee.xml"/>' > add.tmp
+    if [ X"$( echo ${config_UserChoices_ExpType} | grep CMIP6 )" != "X" ] ; then
+        echo '<context id="orchidee" src="./ping_orchidee.xml"/>' >> add.tmp
+        echo '<context id="orchidee" src="./dr2xml_orchidee.xml"/>' >> add.tmp
+    fi
     cp iodef.xml iodef.xml.tmp
     sed -e "/COMPONENT CONTEXT/r add.tmp" iodef.xml.tmp > iodef.xml

CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/DRIVER/stomate.driver

@@ -45 +45 @@
     done
 
+    if [ X"$( echo ${config_UserChoices_ExpType} | grep CMIP6 )" != "X" ] ; then       
+        stomate_enabled=.FALSE.
+    fi
+
     # Modify file_def_orchidee.xml
     IGCM_comp_modifyXmlFile nonblocker file_def_orchidee.xml stomate1 enabled ${stomate_enabled}

CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/config.def_actuel

@@ -55 +55 @@
 ### ok_cdnc=y/n   Cloud droplet number concentration
 ok_cdnc=_AUTO_
-### bl95_b0 =    Parameter in CDNC-maer link (Boucher&Lohmann 1995)
-bl95_b0=1.7
-### bl95_b1 =    Parameter in CDNC-maer link (Boucher&Lohmann 1995)
-bl95_b1=0.2
 # ok_alw=y flag pour activer l effet LW des poussieres
 ok_alw=y

CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/config.def_annuel

@@ -22 +22 @@
 R_incl = 23.441
 ### solaire =    Constante solaire
-solaire = _AUTO_ 
+# solaire est modifie avec les valeurs du fichier SOLARANDVOLCANOES.txt
+# solaire parameter est utilise uniquement avec si iflag_rrtm=0 et ok_suntime_rrtm=n
+solaire = _AUTO_: DEFAULT = 0.0 
 ### constante solaire lue dans un fichier par defaut
 ok_suntime_rrtm=y
@@ -54 +56 @@
 ### ok_cdnc=y/n   Cloud droplet number concentration
 ok_cdnc=_AUTO_
-### bl95_b0 =    Parameter in CDNC-maer link (Boucher&Lohmann 1995)
-bl95_b0=1.7
-### bl95_b1 =    Parameter in CDNC-maer link (Boucher&Lohmann 1995)
-bl95_b1=0.2
 # ok_alw=y flag pour activer l effet LW des poussieres
 ok_alw=y

CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/config.def_preind

@@ -56 +56 @@
 ### ok_cdnc=y/n   Cloud droplet number concentration
 ok_cdnc=_AUTO_
-### bl95_b0 =    Parameter in CDNC-maer link (Boucher&Lohmann 1995)
-bl95_b0=1.7
-### bl95_b1 =    Parameter in CDNC-maer link (Boucher&Lohmann 1995)
-bl95_b1=0.2
 # ok_alw=y flag pour activer l effet LW des poussieres
 ok_alw=y

CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/iodef.xml

@@ -15 +15 @@
     <variable_definition>       
       <variable id="optimal_buffer_size" type="string">performance</variable>
-      <variable id="buffer_size_factor" type="double">2.0</variable>
+      <variable id="buffer_size_factor" type="double">1.0</variable>
       <variable id="min_buffer_size" type="int">10000000</variable>
       <variable id="info_level"            type="int">1</variable>

CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/orchidee.def_CWRR

@@ -2 +2 @@
 #**************************************************************************
 #                    Parameter file list for ORCHIDEE
+# See all optional parameters in modipsl/modeles/ORCHIDEE/orchidee.default
 #**************************************************************************
 
@@ -26 +27 @@
 WRITE_STEP = 0
 
+# Print level for text output in out_orchidee_*
+# PRINTLEV = 1 : some output in initialization phase
+# PRINTLEV = 2 : more output in initialization phase and printing of new date
+# PRINTLEV = 3, 4,.. : more output also at each timestep
+PRINTLEV=1
+
 # Hydrology parameters
 #**************************************************************************
@@ -36 +43 @@
 # default = n
 RIVER_ROUTING = y
+
+# Activate creation of river_desc.nc file
+# RIVER_DESC will be activated only the first execution in the simulation. 
+RIVER_DESC = _AUTO_
 
 # SOILTYPE_CLASSIF :  Type of classification used for the map of soil types (default zobler)
@@ -43 +54 @@
 
 # DO_RSOIL : Reduce soil evaporation with a soil resistance
-DO_RSOIL = y
+DO_RSOIL = n
+
+# To make AVAN and NVAN constant with depth
+CWRR_AKS_A0 = 0.
+CWRR_AKS_POWER = 0.
+CWRR_NKS_A0 = 0.
+CWRR_NKS_POWER = 0.
 
 #**************************************************************************
 # Activate Stomate component
-# default = n
 STOMATE_OK_STOMATE = _AUTOBLOCKER_ 
 
@@ -61 +77 @@
 SECHIBA_QSINT = 0.02
 
-# STRESS_GS, STRESS_GM, STRESS_VCMAX : Stress on GS, GM and VCMAX
-STRESS_GS=1.,1.,1.,1.,1.,1.,1.,1.,1.,1.,1.,1.,1.
-STRESS_GM=1.,1.,1.,1.,1.,1.,1.,1.,1.,1.,1.,1.,1.
-STRESS_VCMAX=0.,0.,0.,0.,0.,0.,0.,0.,0.,0.,1.,0.,1.
+# Use 15 PFTs. Note that PFTmap.nc must contains 15PFTs.
+# PFT=10, 14 and 15 share the same parametrization except for VCMAX and LAI_MAX specified below.  
+NVM=15
+PFT_TO_MTC=1,2,3,4,5,6,7,8,9,10,11,12,13,10,10
+NAME__10='temperate C3           grass      '
+NAME__14='tropical  C3           grass      '
+NAME__15='boreal    C3           grass      '
+
+# STRESS_GS, STRESS_GM, STRESS_VCMAX : Stress on GS, GM and VCMAX (15 values, without space to have short line readable)
+STRESS_GS=1.,1.,1.,1.,1.,1.,1.,1.,1.,1.,1.,1.,1.,1.,1.
+STRESS_GM=1.,1.,1.,1.,1.,1.,1.,1.,1.,1.,1.,1.,1.,1.,1.
+STRESS_VCMAX=1.,1.,1.,1.,1.,1.,1.,1.,1.,1.,1.,1.,1.,1.,1.
 
 # Optimized parameters for albedo
-ALB_LEAF_NIR = 0., 0.23, 0.18, 0.18, 0.20, 0.24, 0.15, 0.26, 0.20, 0.24, 0.27, 0.28, 0.26
-ALB_LEAF_VIS = 0., 0.04, 0.04, 0.04, 0.04, 0.03, 0.03, 0.03, 0.03, 0.06, 0.06, 0.06, 0.06
-SNOWA_AGED_NIR = 0.50, 0, 0, 0.10, 0.37, 0.08, 0.16, 0.17, 0.27, 0.44, 0.44, 0.44, 0.44
-SNOWA_DEC_NIR = 0.13, 0, 0, 0.10, 0.10, 0.16, 0.04, 0.07, 0.08, 0.12, 0.12, 0.12, 0.12
-SNOWA_AGED_VIS = 0.74, 0, 0, 0.08, 0.24, 0.07, 0.18, 0.18, 0.33, 0.57, 0.57, 0.57, 0.57
-SNOWA_DEC_VIS = 0.21, 0, 0, 0.14, 0.08, 0.17, 0.05, 0.06, 0.09, 0.15, 0.15, 0.15, 0.15
+ALB_LEAF_NIR = 0.,0.23,0.18,0.18,0.20,0.24,0.15,0.26,0.20,0.24,0.27,0.28,0.26,0.24,0.24
+ALB_LEAF_VIS = 0.,0.04,0.04,0.04,0.04,0.03,0.03,0.03,0.03,0.06,0.06,0.06,0.06,0.06,0.06
+SNOWA_AGED_NIR = 0.50,0,0,0.10,0.37,0.08,0.16,0.17,0.27,0.44,0.44,0.44,0.44,0.44,0.44
+SNOWA_DEC_NIR = 0.13,0,0,0.10,0.10,0.16,0.04,0.07,0.08,0.12,0.12,0.12,0.12,0.12,0.12
+SNOWA_AGED_VIS = 0.74,0,0,0.08,0.24,0.07,0.18,0.18,0.33,0.57,0.57,0.57,0.57,0.57,0.57
+SNOWA_DEC_VIS = 0.21,0,0,0.14,0.08,0.17,0.05,0.06,0.09,0.15,0.15,0.15,0.15,0.15,0.15
+
+# Optimized parameters for photosynthetic capacity 
+VCMAX25__02 = 45.0
+VCMAX25__03 = 45.0
+VCMAX25__04 = 35.0
+VCMAX25__05 = 40.0
+VCMAX25__06 = 50.0
+VCMAX25__07 = 45.0
+VCMAX25__08 = 35.0
+VCMAX25__09 = 35.0
+VCMAX25__10 = 50.0
+VCMAX25__11 = 50.0
+VCMAX25__12 = 60.0
+VCMAX25__13 = 60.0
+VCMAX25__14 = 50.0
+VCMAX25__15 = 40.0
+
+# Optimized parameters for LAI
+LAI_MAX__02 = 7.0
+LAI_MAX__03 = 5.0
+LAI_MAX__04 = 5.0
+LAI_MAX__05 = 4.0
+LAI_MAX__06 = 5.0
+LAI_MAX__07 = 3.5
+LAI_MAX__08 = 4.0
+LAI_MAX__09 = 3.0
+LAI_MAX__10 = 2.5
+LAI_MAX__11 = 2.0
+LAI_MAX__12 = 5.0
+LAI_MAX__13 = 5.0
+LAI_MAX__14 = 2.5
+LAI_MAX__15 = 2.0
+
+# Activate downregulation for CO2
+DOWNREGULATION_CO2=y
+DOWNREGULATION_CO2_BASELEVEL=380.
+
+# Activate harvest of wood
+DO_WOOD_HARVEST=y
+
+# Growth respiration
+FRAC_GROWTHRESP__02 = 0.35
+FRAC_GROWTHRESP__03 = 0.35
+FRAC_GROWTHRESP__04 = 0.28
+FRAC_GROWTHRESP__05 = 0.28
+FRAC_GROWTHRESP__06 = 0.28
+FRAC_GROWTHRESP__07 = 0.35
+FRAC_GROWTHRESP__08 = 0.35
+FRAC_GROWTHRESP__09 = 0.35
+FRAC_GROWTHRESP__10 = 0.28
+FRAC_GROWTHRESP__11 = 0.28
+FRAC_GROWTHRESP__12 = 0.28
+FRAC_GROWTHRESP__13 = 0.28
+FRAC_GROWTHRESP__14 = 0.35
+FRAC_GROWTHRESP__15 = 0.35
+
+# Maintenance respiration slope C
+MAINT_RESP_SLOPE_C__02 = 0.12
+MAINT_RESP_SLOPE_C__03 = 0.12
+MAINT_RESP_SLOPE_C__04 = 0.16
+MAINT_RESP_SLOPE_C__05 = 0.16
+MAINT_RESP_SLOPE_C__06 = 0.16
+MAINT_RESP_SLOPE_C__07 = 0.25
+MAINT_RESP_SLOPE_C__08 = 0.25
+MAINT_RESP_SLOPE_C__09 = 0.25
+MAINT_RESP_SLOPE_C__10 = 0.16
+MAINT_RESP_SLOPE_C__11 = 0.12
+MAINT_RESP_SLOPE_C__12 = 0.16
+MAINT_RESP_SLOPE_C__13 = 0.12
+MAINT_RESP_SLOPE_C__14 = 0.12
+MAINT_RESP_SLOPE_C__15 = 0.25
+
+# Soil turnover
+CARBON_TAU_ISLOW = 7
+CARBON_TAU_IPASSIVE = 300
 
 # Parameters related to vegetation map
@@ -96 +195 @@
 FIRE_DISABLE = y
 
-# Create river description file
-RIVER_DESC = _AUTO_
-RIVER_DESC_FILE =  river_desc.nc
-
 # Parameters related to surface and thermal physical properties
 #************************************************************************

CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/orchidee.def_Choi

@@ -60 +60 @@
 SECHIBA_QSINT = 0.02
 
+# Use 15 PFTs. Note that PFTmap.nc must contains 15PFTs.
+# PFT=10, 14 and 15 share the same parametrization.  
+NVM=15
+PFT_TO_MTC=1,2,3,4,5,6,7,8,9,10,11,12,13,10,10
+
+# Set NVM and PFT_TO_MTC as follow to run with PFTmap files containing 13 pfts
+# Do this for example to run with the CMIP5 vegetation files
+#NVM=13
+#PFT_TO_MTC=1,2,3,4,5,6,7,8,9,10,11,12,13
+
 # Parmeters related to vegetation map
 #**************************************************************************

CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/physiq.def_NPv6.0.11

@@ -1 +1 @@
 #
-# $Id: physiq.def_NPv6.0.11 3301 2017-07-07 09:46:45Z jgipsl $
+# $Id: physiq.def_NPv6.0.11 3323 2017-07-24 13:28:06Z jgipsl $
 #
-##############################################################################
+
+##############################################################
 # PARAMETRES ET CLES DE LA PHYSIQUE LMDZ
-##############################################################################
+##############################################################
 # D: Valeur par default
 #
-#Parametres Orographiques et cdrags
-#**********************************
+
+###########################################################
+# divers. Devrait aller dans config.def ?
+###########################################################
 ##   Si=.T. ,  lecture du fichier limit avec la bonne annee 
 ok_limitvrai=n
-iflag_albedo=1
-#Cdrags 
+
+###########################################################
+# Parametres couche limite de surface
+###########################################################
+
+          #  ...
 f_cdrag_stable=1.
+
+          # Facteur sur les coefficients de trainee terrestres
 f_cdrag_ter=1.
 
-#parameter for Z0
+          # Vitesse minimum dans les calculs de trainee Cd ( || V || + Vmin )
+min_wind_speed=0.1
+
+###########################################################
+# parameter des flux air-mer
+###########################################################
+
+          # Facteur sur les flux sensibles et latent
+          # Introduit pour reduire l evaporation quand on avait z0h=z0m
+          # CONSEILLE : 1
 f_cdrag_oce=1.
+
+          # Flag controlant le calcul des z0
 iflag_z0_oce=1
+
+          # Rapport entre les Z0 latent et sensible
 f_z0qh_oce=1.55
-min_wind_speed=0.1
-
+
+          # Activation des rafales : Oui 1 ou non 0
+iflag_gusts=0
+
+          # facteur pour les rafales des thermiques (bounary layer)
+f_gust_bl=0.845
+
+          # facteur pour les poches (wake)
+f_gust_wk=0.2
+
+          # facteur sur qsat pour tenir compte de la salinite
+f_qsat_oce=1.
+
+          #cdmmax : valeur max de Cd moment. Sur ocean seulement
+cdmmax=2.5E-3
+
+          #cdhmax : valeur max de Cd evap/sensible. Sur ocean seulement
+cdhmax=2.0E-3
+
+####################################################################
+# Couche limite turbulente
+####################################################################
+
+          # Nouvelle version de Mellor et Yamada
 new_yamada4=y
+
+          # Choix du schema numerique pour new_yamada4=y
+          #  1 schema de MAR. Bien pour CL stables mais detruit les stratocu
+          #  5 schema de MAR modifie. Precaunise.
 yamada4_num=5
+
+          # Flag de controle de la couche limite stable
 iflag_corr_sta=4
+
+          # min sur les fonction de stabilite a la surface
 f_ri_cd_min=0.01
+
+          # max du Ric pour Kz. Decouplage plus grand pour Ric plus grand.
 yamada4_ric=0.18
+
+          # Longueur de melange minimum pour Kz
 lmixmin=0.
-#cdmmax
-cdmmax=2.5E-3
-#cdhmax
-cdhmax=2.0E-3
-##  Orodr  ou  non   pour l orographie
+
+          #shema de la couche de surface (D:1, 1:LMD, 8:Mellor-Yamada) 
+iflag_pbl=12
+
+          # Seuils pour la diffusion turbulente
+ksta_ter=1.e-7
+ksta=1.e-10
+
+          #ok_kzmin : calcul Kzmin dans la CL de surface (D: y)
+ok_kzmin=n
+
+          # Creation de TKE par orographie sous-maille
+addtkeoro=0
+alphatkeoro=1.
+smallscales_tkeoro=n
+
+
+####################################################################
+# Ondes de gravite / Orographie sous maille
+####################################################################
+
+          #  Orodr  ou  non   pour l orographie
 ok_orodr=y
-##  Orolf  ou  non   pour l orographie              
+
+          #  Orolf  ou  non   pour l orographie              
 ok_orolf=y
-#Rugoro
+
+          #Rugoro : inclusion de l orographie sous maille dans le Cd de surface
+          # Obsolete avec l activation des ondes de gravite
 f_rugoro=0.
-#
-### Random gravity waves
-#Activitate the stochastic parameterization of convective GWs (should be equal to ok_strato)
-ok_gwd_rando=y
-# Scale the momentum fluxes due to convective GWs
-gwd_rando_ruwmax=0.23
-#Scale the saturated momentum flux of  convective GWs 
-gwd_rando_sat=0.60
-#
-gwd_front_ruwmax = 4.00
-
+
+          # Parametres controlant l effet de l orographie sous maille
 sso_gfrcri=0.70
 sso_gkdrag=0.6
 sso_gkwake=0.4
 sso_gklift=0.1
-#
+
+          # Random gravity waves
+          #Activitate the stochastic parameterization of convective GWs
+          # (should be equal to ok_strato)
+ok_gwd_rando=y
+
+          # Scale the momentum fluxes due to convective GWs
+gwd_rando_ruwmax=0.23
+
+          #Scale the saturated momentum flux of  convective GWs 
+gwd_rando_sat=0.60
+
+          # Important pour controler la periode de la QBO
+gwd_front_ruwmax = 3.00
+
+
+###############################################################
 # Rayonnement
-#*********************
-# activation du nouveau code de rayonnement RRTM
-# 0 : Ancien code et 1 : RRTM (D=0)
+###############################################################
+          # activation du nouveau code de rayonnement RRTM
+          # 0 : Ancien code et 1 : RRTM (D=0)
 iflag_rrtm=1
+
+          # Nombre de bandes pour le SW. Mettre 2 si iflag_rrtm=0
 NSW=6
-#
+
+    # Albedo et inertie des calottes
+alb_vis_sno_lic=0.96
+alb_nir_sno_lic=0.68
+inertie_sno=350.
+
+          # ???
+iflag_albedo=1
+
+          # Frequence appel rayonnement. Nombre appels par jour
+nbapp_cv=48
+
+          # Pour pouvoir revenir a un bug purement informatique de duplication
+          # des constantes thermodynamiques entre LMDZ et RRTM
+          # n : FORTEMENT CONSEILLE
+ok_bad_ecmwf_thermo=n
+
+###############################################################
 # Parametres nuages
-#******************
-#seuils de la precipitation des nuages strateformes (D: 2.6e-4 2.6e-4)
-cld_lc_lsc=0.0000783
-cld_lc_con=0.0000783
-#constante de temps pour eleminer eau lsc et convective (D: 3600. 3600.)
+###############################################################
+
+          #seuils de la precipitation des nuages strateformes (D: 2.6e-4 2.6e-4)
+cld_lc_lsc=0.000075
+cld_lc_con=0.000075
+
+          #constante de temps pour eleminer eau lsc et convective
+          # (D: 3600. 3600.)
 cld_tau_lsc=900.
 cld_tau_con=900.
-#facteurs correctifs sur la vitesse de chute des cristaux de glace (D: 1 1)
+
+          #facteurs correctifs sur la vitesse de chute des cristaux de glace (D: 1 1)
 ffallv_lsc=0.6
 ffallv_con=0.6
-#coefficient sur la reevaporation de la pluie (D: 2.e-5 n)
+
+          # coefficient sur la reevaporation de la pluie (D: 2.e-5 n)
+          # regle a 3.e-5 sur des cas de cumulus en 1D
 coef_eva=1.e-4
+
+          # flag pour la reevaporation de la pluie
+          # 0: rien
+          # 1: a l ancienne
+          # 2: prend en compte la surface nuageuse max au dessus pour calculer
+          #    le max de reevaporation, comme ecart a la saturation. CONSEILLE
+iflag_evap_prec=1
+
+          # Modification de la plage de temperature pour la phase mixte
+          # liquide/glace des nuages
+          # Controle par les t_glace_min/max, exposant_glace,
+          # iflag_t_glace (D=0)
+t_glace_min=243.15
+t_glace_max=273.15
+exposant_glace=2.
+iflag_t_glace=2
+
+          # Activation de la thermodynamique de la glace
+iflag_ice_thermo=1
+
+          # normalement elle ne sert plus a rien dans fisrtilp
+          # sinon elle est un peu toxique:
+          # IF (zt(i) .LT. t_coup.and.reevap_ice) zrfln(i)=0. (Jean-Baptiste)
 reevap_ice=y
-#calcul des proprietes des nuages convectifs (D:1 0.375 1.e-4) 
+
+          #Bergeron
+iflag_bergeron=2
+
+          # temperature dependency of qsat for iterative procedure
+          # temporary flag to switch between the old (CMIP5, D=0)
+          # and new versions (=1) versions 
+iflag_fisrtilp_qsat=4 
+
+          #calcul des proprietes des nuages convectifs (D:1 0.375 1.e-4) 
 iflag_cldcon=6
 fact_cldcon=1.
+
+          # ?????
 facttemps=0.
-#calcul eau condensee et fraction nuageuse a partir des PDF (D:0, 0:version avec ratqs sinon nouvelles PDFs)  
+
+          #calcul eau condensee et fraction nuageuse a partir des PDF
+          # (D:0, 0:version avec ratqs sinon nouvelles PDFs)  
 iflag_pdf=1
-#calcul epaisseur optique et emmissivite des nuages (D: y 1 0.01 0.3)
+
+          #calcul epaisseur optique et emmissivite des nuages (D: y 1 0.01 0.3)
 ok_newmicro=y
+
+          # Controle des ratqs grande echelle
 iflag_ratqs=4
 ratqsp0=45000.
@@ -88 +235 @@
 ratqsbas=0.002
 ratqshaut=0.4
-#rayon effectif pour les nuages de glace (D:35)
+
+          #rayon effectif pour les nuages de glace (D:35)
 rad_froid=35
-#rayons effectifs pour les nuages eau liq (tailles des gouttes d eau nuageuse, D: 13 9)
+
+          #rayons effectifs pour les nuages eau liq (tailles des gouttes
+          # d eau nuageuse, D: 13 9)
 rad_chau1=12
 rad_chau2=11
-##  Choix ou non  de  New oliq               
+
+          #  Choix ou non  de  New oliq               
 new_oliq=y
-# Seuils oliqmax, oicemax
+
+          # Seuils oliqmax, oicemax (en g/kg).
+          # Au dela on precipite directement au sol
 oliqmax=1.5E-3
 oicemax=1.5E-3
-#Rayons min et max effectifs des particules des nuages
+
+          #Rayons min et max effectifs des particules des nuages
 rei_min=16.
 rei_max=61.29
-#
-# Flags Convection 
-#*****************
-#Convection scheme switch (D:2, 1:LMD, 2:Tiedtke, 3:KE New Physics, 30:KE AR4)
+
+          # Distribution vetricale sous maille pour le schema de de nuages.
+          # 0: rien
+          # 1: Premiere version A. Jam,
+          # 2 : J. Jouhaud, parametre cloudth_vert_alpha D=0.5
+          # 3 : J. Jouhaud, parametre cloudth_vert_alpha D=0.5/C= 1.32
+          #                           cloudth_vert_alpha_th C=2:91
+iflag_cloudth_vert=3
+cloudth_vert_alpha=0.5
+cloudth_vert_alpha_th=0.5
+
+
+######################################################################
+# Convection 
+######################################################################
+
+          #Convection scheme switch
+          # (D:2, 1:LMD, 2:Tiedtke, 3:KE New Physics, 30:KE AR4)
 iflag_con=3
-#output level of energy conservation diagnostics
+
+          #output level of energy conservation diagnostics
 if_ebil=0
-#maximum efficiency of cld water->precipitation conversion (D: 0.993)
+
+          #maximum efficiency of cld water->precipitation conversion (D: 0.993)
 epmax=0.9985
-#dry convective adjustment at beginning of Emanuel convective scheme (D: n 0)
+
+          #dry convective adjustment at beginning of Emanuel convective scheme (D: n 0)
 ok_adj_ema=n
 iflag_clw=0
-#Convective closure (D:1, 0:AR4, 2:ALE and ALP)
+
+          #Convective closure (D:1, 0:AR4, 2:ALE and ALP)
 iflag_clos=2
-#Convective entrainment mixing law (D:1, 0:AR4=flat PDF, 1=PDF)
+
+          #Convective entrainment mixing law (D:1, 0:AR4=flat PDF, 1=PDF)
 iflag_mix=1
-#weights of the bell shaped and flat PDF (used only if iflag_mix=1) (D: 1 0)
+
+          #weights of the bell shaped and flat PDF (used only if iflag_mix=1) (D: 1 0)
 qqa1=1.
 qqa2=0.
-#Parameters of the bell shaped PDF; Fmax=center (D= 0.65), Gammas=width (D=0.05)
+
+          #Parameters of the bell shaped PDF; Fmax=center (D= 0.65), Gammas=width (D=0.05)
 cvl_corr=1.0
-#Multiplicative factor of Emanuel convective scheme precipitation (D: 1.)
+
+          #Multiplicative factor of Emanuel convective scheme precipitation (D: 1.)
 Fmax=0.65
-#
+          #
 t_top_max=255.
 #
-# Flags Couche limite
-#********************
-#shema de CL des thermiques (D:0, 0:ajustement sec,=>1:versions thermiques) 
+### Convection
+          #altitude, in hPa, above LCL at which buoybase is computed,
+          # def = original: -40
+dpbase=-40.
+
+          #reference fractional area of precipitating downdraughts,
+          # def = original: 0.01
+sigdz=0.01
+
+          #unsaturated fraction of precipitating downdraughts, def = original: 0.15
+spfac=0.15
+
+          #relaxation time of cloud base mass flux, def = original: 8000
+tau=8000.
+
+          #flag for wb (= vert velocity at LFC);
+          # 0->wb=wbmax, 1->wb=f(plfc) bounded, 2->wb=f(plfc) linear, D=1
+          # Si iflag_wb>=10 : wbeff_min=iflag_wb*0.1
+          # wbmax : assymptotic value 
+flag_wb=1
+wbmax=6.
+
+          # Divers tests
+ok_convstop=.False.
+tau_stop=15000.
+ok_intermittent=.False.
+
+          # nouvel epluchage de C.Rio
+          #shedding coefficient (used when iflag_mix_adiab=1)
+iflag_mix_adiab=0
+coef_peel=0.25
+
+          #Conversion cld water->precip: Ep=f(pressure) if 0; Ep=f(temperature)
+          #if 1, def=1
+flag_epKEorig=1
+
+          # Case : flag_epKEorig=1
+          # elcrit : max condensed water concentration in kg/kg, D=0.0003,
+          # tlcrit : temperature in degre Celsius, at which Ep=Epmax, D=-55. (original)
+          # original: 0.0011, used only if flag_epKEorig=1
+elcrit=0.00025
+tlcrit=-40.
+
+          # Case : flag_epKEorig=0
+          # pbcrit : pressure (hPa), above LCL below which Ep=0, D=150 (original)
+          # ptcrit : pressure (hPa), above LCL above which Ep=Epmax, D=500 (original)
+pbcrit=150.0
+ptcrit=500.0
+
+          # Prevent some crashes
+          # Filter out bad wakes
+flag_wk_check_trgl=y
+
+          # Check whether parcel level temperature and specific humidity
+          # are reasonable and demand that LCL be high enough
+cv_flag_feed=2
+
+          # save 20% CPU 
+ok_optim_yield=y
+
+
+##########################################################
+# Fermeture convective et couplages
+##########################################################
+
+          # Appel separe des thermiques 
+iflag_pbl_split=0
+
+          #rendement sur la puissance fournie par les thermiques a la convection
+alp_bl_k=0.5
+
+          #Constant value to be added to Alp (D: 0.)
+alp_offset=0.
+
+          ### nrlmd le 10/04/2012: Declenchement ###
+          #Declenchement par couche-limite (0: deterministe, 1: stochastique)
+iflag_trig_bl=1
+
+          #Surface critique au LCL
+s_trig=1.2e7
+
+          #Temps de decorrelation entre scenes de cumulus
+tau_trig_shallow=1200
+
+          #Temps de decorrelation entre scenes de cumulonimbus
+tau_trig_deep=1200
+
+          # Pour la stabilisation
+random_notrig_max=0.99
+
+          # Temperature a la quelle on fond les descentes glacees
+tmax_fonte_cv=278.15
+
+          #Fermeture par couche-limite (Nicolas Rochetin)
+          #(0: deterministe, 1: statistique, 2: statistique+convergence
+          # grande echelle)
+iflag_clos_bl=1
+
+          #coefficient in Wape->C_star formula: C_star=stark*sqrt(2*Wape),
+          # def: 0.33
+stark=0.33
+
+          #lifting efficiency of wakes; Alp=Alpk*Fip, Fip=power provided
+          # by wakes, def: 0.25
+alpk=0.25
+
+#
+##########################################################
+# Couche limite convective / modele du thermique
+##########################################################
+
+          # Convection seche (D:0, 0:ajustement sec,=>1:modele du thermique) 
 iflag_thermals=18
-#pas de temps du spliting pour les thermiques
+
+          # pas de temps du spliting pour les thermiques
+          # TOURNE MAIS POSE PLUS DE PROBLEME QU ELLE N EN RESOUD
 nsplit_thermals=1
+
+          # tau_thermals pour avoir une constante de temps sur les thermiques.
+          # Non valide
 tau_thermals=0.
+
+          # Flag controlant le detrainement et l entrainement
 iflag_thermals_ed=8
+
+          # On va chercher l air a z * ( 1+fact_thermals_ed_dz) pour calculer
+          # le detrainement (A. Jam)
 fact_thermals_ed_dz=0.07
+
+          # Une option de plus sur les thermiques.
 iflag_thermals_optflux=0
-#shema de la couche de surface (D:1, 1:LMD, 8:Mellor-Yamada) 
-iflag_pbl=12
-#diffusion turbulente
-ksta_ter=1.e-7
-ksta=1.e-10
-#ok_kzmin : calcul Kzmin dans la CL de surface
-### ok_kzmin=y
-#couplage ou non avec la convection
+
+          #couplage ou non avec la convection
 iflag_coupl=5 (0:AR4 et 1:nouvelle physique)
+
+          # Seuil pour desactiver les thermiques en cas de forte inversion
+          # en sommet de couche limite. Actif si iflag_thermals impair.
 seuil_inversion=-0.08
-#rendement sur la puissance fournie par les thermiques a la convection
-alp_bl_k=0.5
-#
-## temperature dependency of qsat for iterative procedure
-## temporary flag to switch between the old (CMIP5, D=0) and new versions (=1) versions 
-iflag_fisrtilp_qsat=4 
-## Reactivation du calcul d un zmax continu pour les thermiques
-## reactivation d une fermeture humide des thermiques  iflag_thermals_closure=2 (D=1)
+
+          # Reactivation du calcul d un zmax continu pour les thermiques
+          # reactivation d une fermeture humide des thermiques
+          # iflag_thermals_closure=2 (D=1)
 iflag_thermals_closure=2
-#
+
+
+##########################################################
 # Flags wakes
-#************
-#Wake scheme switch (D:0, 0:AR4, 1:New Physics)
+##########################################################
+
+          #Wake scheme switch (D:0, 0:AR4, 1:New Physics)
 iflag_wake=1
-#Constant value to be added to Alp (D: 0.)
-alp_offset=0.
-
-### nrlmd le 10/04/2012: Declenchement ###
-#Declenchement par couche-limite (0: deterministe, 1: stochastique)
-iflag_trig_bl=1
-#Surface critique au LCL
-s_trig=1.2e7
-#Temps de decorrelation entre scenes de cumulus
-tau_trig_shallow=1200
-#Temps de decorrelation entre scenes de cumulonimbus
-tau_trig_deep=1200
-# Pour la stabilisation
-random_notrig_max=0.99
-ok_adjwk=y
-tmax_fonte_cv=278.15
-#
-
-### nrlmd le 10/04/2012: Fermeture ###
-#Fermeture par couche-limite (0: deterministe, 1: statistique, 2: statistique+convergence grande echelle)
-iflag_clos_bl=1
-### fin nrlmd le 10/04/2012
-
-## Modification de la plage de temperature pour la phase mixte liquide/glace des nuages
-## Controle par les t_glace_min/max, exposant_glace, iflag_t_glace (D=0)
-t_glace_min=243.15
-t_glace_max=273.15
-exposant_glace=2.
-iflag_t_glace=2
-iflag_ice_thermo=1
-
-#
-## The source terms of the TKE prognostic equation are diagnosed from tendencies (du, dv, dT) 
-## associated with subrgrid scaleamotions and treated as an additional heat source.
-## Controled by a key, iflag_ener_conserv (D=-1):
-## 0 : no conservation, -1 : old adhoc correction for kinetic E only (used for CMIP5) 
-## 1 : conservation, 101 : conversion from kinetic to heat only, 110 conversion from potential to heat only
-iflag_ener_conserv=1
-
-#Activation of corrections for water conservation (D: n). 
-##The default is n for compatibility with earlier versions.
-##generally it should be y.
-ok_conserv_q=y 
-
-iflag_cloudth_vert=3
-
-#
-
-#Bergeron
-iflag_bergeron=2
-
-
-### Convection
-#altitude, in hPa, above LCL at which buoybase is computed, def = original: -40
-dpbase=-40.
-#altitude, in hPa, above LCL below which Ep=0, def = original: 150, used only if flag_epKEorig=0
-pbcrit=150.0
-#altitude, in hPa, above LCL above which Ep=Epmax, def = original: 500, used only if flag_epKEorig=0
-ptcrit=500.0
-#reference fractional area of precipitating downdraughts, def = original: 0.01
-sigdz=0.01
-#unsaturated fraction of precipitating downdraughts, def = original: 0.15
-spfac=0.15
-#relaxation time of cloud base mass flux, def = original: 8000
-tau=8000.
-#flag for wb (= vert velocity at LFC); 0->wb=wbmax, 1->wb=f(plfc) bounded, 2->wb=f(plfc) linear, def = 1
-flag_wb=1
-#parameter used in the computation of wb, def = 6.
-wbmax=6.
-#
-ok_convstop=.False.
-#
-tau_stop=15000.
-#
-ok_intermittent=.False.
-# nouvel epluchage de C.Rio
-iflag_mix_adiab=0
-#shedding coefficient (used when iflag_mix_adiab=1)
-coef_peel=0.25
-#
-### Clouds
-#Conversion cld water->precip: Ep=f(pressure) if 0; Ep=f(temperature) if 1, def=1
-flag_epKEorig=1
-#max condensed water concentration in kg/kg, def=0.0003, original: 0.0011, used only if flag_epKEorig=1
-elcrit=0.00025
-#temperature in degre Celsius, at which Ep=Epmax, def=-55., original: -55, used only if flag_epKEorig=1
-tlcrit=-40.
-
-### Wakes
-#coefficient in Wape->C_star formula: C_star=stark*sqrt(2*Wape), def: 0.33
-stark=0.33
-#lifting efficiency of wakes; Alp=Alpk*Fip, Fip=power provided by wakes, def: 0.25
-alpk=0.25
-#wake density = number of wake centers per m2, def: 8.E-12
-#wdens_ref=8.E-12
+
+          #multiplicative factor of the damping by gravity waves, def: 4.
+coefgw=4.
+
+          #wake density = number of wake centers per m2, def: 8.E-12
+          #wdens_ref=8.E-12
 wdens_ref_o=1.e-9
 wdens_ref_l=8.e-12
-#
-#multiplicative factor of the damping by gravity waves, def: 4.
-coefgw=4.
-#
-alb_vis_sno_lic=0.96
-alb_nir_sno_lic=0.68
-inertie_sno=350.
-
-nbapp_cv=48
-# Prevent some crashes
-# Filter out bad wakes
-flag_wk_check_trgl=y
-# Check whether parcel level temperature and specific humidity
-# are reasonable and demand that LCL be high enough
-cv_flag_feed=2
-#
-#
-# Correction sur ctes passees a rrtm
-ok_bad_ecmwf_thermo=n
-# Conservation de l energie
+
+          # Ajustement convectif prealable au calcul des poches
+ok_adjwk=y
+
+
+####################################################################
+#  Conservation 
+####################################################################
+
+          # The source terms of the TKE prognostic equation are diagnosed
+          # from tendencies (du, dv, dT) 
+          # associated with subrgrid scaleamotions and treated as an 
+          # additional heat source.
+          # Controled by a key, iflag_ener_conserv (D=-1):
+          # 0 : no conservation, -1 : old adhoc correction for kinetic E only
+          # (used for CMIP5) 
+          # 1 : conservation, 101 : conversion from kinetic to heat only,
+          # 110 conversion from potential to heat only
+iflag_ener_conserv=1
+
+          #Activation of corrections for water conservation (D: n). 
+          ##The default is n for compatibility with earlier versions.
+          ##generally it should be y.
+ok_conserv_q=y 
+
 fl_cor_ebil=1
-#
-# save 20% CPU 
-ok_optim_yield=y

CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/run.def

@@ -54 +54 @@
 ### Only read by ce0l : Do not set land points on Antartic
 no_ter_antartique=y
-### Choose to run with tracers 
-iflag_phytrac=1
 
 

CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/POST/monitoring01_lmdz.cfg

@@ -42 +42 @@
  nettop_global  | "tops topl"                  | "" | "(tops[d=1]-topl[d=2])"   | "TOA. total heat flux (GLOBAL)"          | "W/m^2"     | "aire[d=1]"
  nettop0_global | "tops0 topl0"                | "" | "(tops0[d=1]-topl0[d=2])" | "TOA. total heat flux ClearSky (GLOBAL)" | "W/m^2"     | "aire[d=1]"
- t2m_global     | "t2m"                        | "" | "(t2m[d=1]-273.15)"       | "Temperature at 2 meters (GLOBAL)"       | "degrees C" | "aire[d=1]"
+ t2m_global_prio     | "t2m"                        | "" | "(t2m[d=1]-273.15)"       | "Temperature at 2 meters (GLOBAL)"       | "degrees C" | "aire[d=1]"
  t2m_land       | "t2m pourc_ter pourc_lic"    | "" | "(t2m[d=1]-273.15)"       | "Temperature at 2 meters (LAND)"         | "degrees C" | "aire[d=1]*((pourc_ter[d=2]+pourc_lic[d=3])/100.)"
  tsol_global    | "tsol"                       | "" | "(tsol[d=1]-273.15)"      | "Surface Temperature (GLOBAL)"           | "degrees C" | "aire[d=1]"
@@ -50 +50 @@
  evap_global    | "evap"                       | "" | "evap[d=1]"               | "Evaporation (GLOBAL)"                   | "kg/(s*m2)" | "aire[d=1]"
  evap_land      | "evap pourc_ter pourc_lic"   | "" | "evap[d=1]"               | "Evaporation (LAND)"                     | "kg/(s*m2)" | "aire[d=1]*((pourc_ter[d=2]+pourc_lic[d=3])/100.)"
- flat_global    | "lat_ter pourc_ter lat_sic pourc_sic lat_lic pourc_lic lat_oce pourc_oce" | "" | "(lat_ter[d=1]*pourc_ter[d=2]+lat_sic[d=3]*pourc_sic[d=4]+lat_lic[d=5]*pourc_lic[d=6]+lat_oce[d=7]*pourc_oce[d=8])" | "Latent Heat Flux (GLOBAL)"      | "W/m^2" | "aire[d=1]"
+ flat_global    | "flat"                       | "" | "flat[d=1]"               | "Surf. latent heat flux (GLOBAL)"         | "W/m^2"     | "aire[d=1]"
  prw_global     | "prw"                        | "" | "prw[d=1]"                | "Precipitable water (GLOBAL)"            | "kg/m^2"    | "aire[d=1]"
  ener_global    | "nettop precip snow sols soll sens" | "" | "nettop[d=1,x=@ave,y=@ave]+(precip[d=2,x=@ave,y=@ave]-snow[d=3,x=@ave,y=@ave])*2.5008E+6+snow[d=3,x=@ave,y=@ave]*2.8345E+6-sols[d=4,x=@ave,y=@ave]-soll[d=5,x=@ave,y=@ave]-sens[d=6,x=@ave,y=@ave]" | "Destruction d energie par l atmosphere" | "W/m^2" | "1" |
+ bils_corrected_global  | "bils precip snow flat" | "" | "bils[d=1,x=@ave,y=@ave]-flat[d=4,x=@ave,y=@ave]-(precip[d=2,x=@ave,y=@ave]-snow[d=3,x=@ave,y=@ave])*2.5008E+6-snow[d=3,x=@ave,y=@ave]*2.8345E+6" | "Corrected energy budget at surface" | "W/m^2" | "1" |
+ vitu_qbo               | "vitu"                  | "" | "vitu[y=-5:5@ave,x=-180:180@ave,z=5000,d=1]"                | "vitu at 5000 Pa for QBO +5deg/-5deg"            | "m/s"    | "1"
  od550aer_tropo_forcing | "od550aer"              | "" | "od550aer[d=1]"           | "Total aerosol optical depth at 550nm"   | "-"         | "aire[d=1]"   
- od550aer_strat_forcing | "OD550_STRAT"           | "" | "OD550_STRAT[d=1]"        | "Aerosol optical depth at 550nm"         | "-"         | "aire[d=1]"   
+ od550aer_strat_forcing | "od550_STRAT"           | "" | "od550_STRAT[d=1]"        | "Aerosol optical depth at 550nm"         | "-"         | "aire[d=1]"   
  od550lt1aer_forcing    | "od550lt1aer"           | "" | "od550lt1aer[d=1]"        | "Fine mode optical depth"                | "-"         | "aire[d=1]"   
- absvisaer_forcing      | "absvisaer"             | "" | "absvisaer[d=1]"          | "Absorption aerosol visible optical depth" | "-"       | "aire[d=1]"   
  topswai_forcing        | "topswai"               | "" | "topswai[d=1]"            | "AIE at TOA"                             | "W/m^2" | "aire[d=1]"
  solswai_forcing        | "solswai"               | "" | "solswai[d=1]"            | "AIE at SRF"                             | "W/m^2" | "aire[d=1]"
@@ -63 +64 @@
  tro3_strato_forcing    | "tro3"                  | "" | "tro3[x=@din,y=@din,k=1:7@sum,d=1]"  | "ozone strato k=1:7@sum" | "Mole" | ""
  tro3_tropo_forcing     | "tro3"                  | "" | "tro3[x=@din,y=@din,k=8:17@sum,d=1]" | "ozone trop k=8:17@sum"  | "Mole" | ""
+ tro3_strato_forcing_DU | "colO3_strat"           | "" | "colO3_strat[x=@din,y=@din,d=1]"     | "colonne ozone strato" | "DU" | ""
+ tro3_tropo_forcing_DU  | "colO3_trop"            | "" | "colO3_trop[x=@din,y=@din,d=1]"      | "colonne ozone trop"   | "DU" | ""
  solaire_forcing        | "solaire"               | "" | "solaire[d=1]"   | "Constante solaire"      | "W/m^2" | "1"
  rsun1_forcing          | "rsun1"                 | "" | "rsun1[d=1]"     | "Fraction bande 1"       | "-"     | "1"

CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/POST/monitoring01_stomate.cfg

@@ -42 +42 @@
 fHarvest_lands      | "HARVEST_ABOVE"             | "" | "((HARVEST_ABOVE[d=1])*AREAS[d=1]*CONTFRAC[d=1]*365/1e15)"                | "CO2 flux from Land Use Change and Crop Harvesting"        | "PgC/yr" | "2"
 nbp_lands           | "nbp"                       | "" | "(nbp[d=1]*AREAS[d=1]*CONTFRAC[d=1]*86400*365/1e12)"                      | "Net Biospheric Production"                                | "PgC/yr" | "2"
-cSoil_lands         | "TOTAL_SOIL_CARB VEGET_MAX" | "" | "(TOTAL_SOIL_CARB[d=1]*VEGET_MAX[d=2]*AREAS[d=1]*CONTFRAC[d=1]/1e15)"     | "Carbon Soil in Pool"                                      | "PgC"    | "2"
-cVeg_lands          | "TOTAL_M VEGET_MAX"         | "" | "(TOTAL_M[d=1]*VEGET_MAX[d=2]*AREAS[d=1]*CONTFRAC[d=1]/1e15)"             | "Carbon in vegetation"                                     | "PgC"    | "2"
-npp_lands           | "NPP VEGET_MAX"             | "" | "(NPP[d=1]*365*VEGET_MAX[d=2]*AREAS[d=1]*CONTFRAC[d=1]/1e15)"             | "Net Primary Production"                                   | "PgC/yr" | "2"
-rh_lands            | "HET_RESP VEGET_MAX"        | "" | "(HET_RESP[d=1]*365*VEGET_MAX[d=2]*AREAS[d=1]*CONTFRAC[d=1]/1e15)"        | "Heterotrophic Respiration"                                | "PgC/yr" | "2"
-fFire_lands         | "CO2_FIRE VEGET_MAX"        | "" | "(CO2_FIRE[d=1]*365*VEGET_MAX[d=2]*AREAS[d=1]*CONTFRAC[d=1]/1e15)"        | "CO2 emission from fire"                                   | "PgC/yr" | "2"
+cSoil_lands         | "TOTAL_SOIL_CARB VEGET_COV_MAX" | "" | "(TOTAL_SOIL_CARB[d=1]*VEGET_COV_MAX[d=2]*AREAS[d=1]*CONTFRAC[d=1]/1e15)"     | "Carbon Soil in Pool"                                      | "PgC"    | "2"
+cVeg_lands          | "TOTAL_M VEGET_COV_MAX"         | "" | "(TOTAL_M[d=1]*VEGET_COV_MAX[d=2]*AREAS[d=1]*CONTFRAC[d=1]/1e15)"             | "Carbon in vegetation"                                     | "PgC"    | "2"
+npp_lands           | "NPP VEGET_COV_MAX"             | "" | "(NPP[d=1]*365*VEGET_COV_MAX[d=2]*AREAS[d=1]*CONTFRAC[d=1]/1e15)"             | "Net Primary Production"                                   | "PgC/yr" | "2"
+rh_lands            | "HET_RESP VEGET_COV_MAX"        | "" | "(HET_RESP[d=1]*365*VEGET_COV_MAX[d=2]*AREAS[d=1]*CONTFRAC[d=1]/1e15)"        | "Heterotrophic Respiration"                                | "PgC/yr" | "2"
+fFire_lands         | "CO2_FIRE VEGET_COV_MAX"        | "" | "(CO2_FIRE[d=1]*365*VEGET_COV_MAX[d=2]*AREAS[d=1]*CONTFRAC[d=1]/1e15)"        | "CO2 emission from fire"                                   | "PgC/yr" | "2"
 #------------------------------------------------------------------------------------------------------------------------------------------------------