Ignore:
Timestamp:
07/03/18 11:41:59 (6 years ago)
Author:
cetlod
Message:

Consolidation of NEMO_v6 for OMIP

Location:
CONFIG/UNIFORM/v6/NEMO_v6
Files:
1 added
23 edited

Legend:

Unmodified
Added
Removed

  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA1_LIM3_PISCES/core/clim/COMP/pisces.card

    r3856 r3961  
    55PisFreq=1 
    66Offline_Mode=n 
     7Co2Anthr=n 
    78AtmCo2=2.8432e+02 
    89OutputLevel=10 

  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA1_LIM3_PISCES/core/ia/COMP/pisces.card

    r3862 r3961  
    55PisFreq=1 
    66Offline_Mode=n 
     7Co2Anthr=n 
    78AtmCo2=2.8432e+02 
    89OutputLevel=10 

  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA1_LIM3_PISCES/jra/ia/COMP/pisces.card

    r3862 r3961  
    55PisFreq=1 
    66Offline_Mode=n 
     7Co2Anthr=n 
    78AtmCo2=2.8432e+02 
    89OutputLevel=10 

  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA1_LIM3_PISCES_CMIP6/omip1/ia/COMP/opa9.card

    r3943 r3961  
    2929[BoundaryFiles] 
    3030List=  (${opa9_UserChoices_R_FORCING}/weights_coreII_2_eorca1_bilinear.nc, weights_bilinear.nc), \ 
    31        (${opa9_UserChoices_R_FORCING}/weights_coreII_2_eorca1_bicubic.nc , weights_bicubic.nc), \ 
    32        (${R_IN}/CMIP6/${config_UserChoices_LongName}/${config_UserChoices_ModelName}/${config_UserChoices_ExperimentName}/${config_UserChoices_Member}/${year}/dr2xml_nemo.xml, dr2xml_opa9.xml) 
     31       (${opa9_UserChoices_R_FORCING}/weights_coreII_2_eorca1_bicubic.nc , weights_bicubic.nc) 
    3332 
    3433ListNonDel= (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/ahmcoef.nc, .), \ 

  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA1_LIM3_PISCES_CMIP6/omip1/ia/COMP/pisces.card

    r3941 r3961  
    55PisFreq=1 
    66Offline_Mode=n 
     7Co2Anthr=n 
    78AtmCo2=2.8432e+02 
    89OutputLevel=1 
    … …  
    3031            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Ndep_input4MIPs/weights_CMIP_NCAR-CCMI_eORCA1_bilinear.nc, weights_2d_bilin.nc), \ 
    3132            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/par_fraction_gewex_clim90s00s_eORCA_R1.nc, par.orca.nc        ), \ 
    32             (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Solubility_T62_Mahowald_eORCA_R1.nc      , solubility.orca.nc ) 
    33  
     33            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Solubility_T62_Mahowald_eORCA_R1.nc   , solubility.orca.nc ), \ 
     34            (${R_IN}/OCE/NEMO/FORCINGS/GHG/CFCs_CDIAC.dat                                                                         , CFCs_CDIAC.dat     ), \ 
     35            (${R_IN}/OCE/NEMO/FORCINGS/GHG/CO2_OMIP6_1700_2014.txt                                                                , atcco2.txt         ) 
    3436 
    3537 
    … …  
    4042        (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA1_LIM3_PISCES/EXP00/field_def_nemo-pisces.xml   , field_def_nemo-pisces.xml  ), \ 
    4143        (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA1_LIM3_PISCES/EXP00/field_def_nemo-inerttrc.xml , field_def_nemo-inerttrc.xml), \ 
    42         (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA1_LIM3_PISCES/EXP00/CFCs_CDIAC.dat              , CFCs_CDIAC.dat             ), \ 
    4344        (${SUBMIT_DIR}/PARAM/NAMELIST/${RESOL_OCE}/namelist_top_cfg                            , namelist_top_cfg           ), \ 
    4445        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_pisces_cfg                                      , namelist_pisces_cfg        ), \ 
    4546        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_cfc_cfg                                         , namelist_cfc_cfg           ), \ 
    46         (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-pisces.xml                                      , file_def_nemo-pisces.xml   ) 
     47        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-pisces_cmip6.xml                                , file_def_nemo-pisces.xml   ) 
    4748 
    4849 

  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA1_LIM3_PISCES_CMIP6/omip1/ia/config.card

    r3941 r3961  
    2828#-- Begin and end of Job 
    2929#-- "YYYY-MM-DD" 
    30 DateBegin=1948-01-01 
     30DateBegin=1700-01-01 
    3131DateEnd=2009-12-31 
    3232#============================ 
    … …  
    5353ICE= ("", "", "") 
    5454MBG= ("", "", "") 
    55 IOS= (xios_server.exe, xios.x, 1MPI) 
     55IOS= (xios_server.exe, xios.x, 4MPI, 2NOD) 
    5656#======================================================================== 
    5757#D-- Restarts - 

  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA1_LIM3_PISCES_CMIP6/omip2/ia/COMP/opa9.card

    r3943 r3961  
    2121ListForcing=(u_10.30Jun2016 v_10.30Jun2016 t_10.30Jun2016 q_10.30Jun2016 rsds.30Jun2016 rlds.30Jun2016 rain.15Dec2016 snow.15Dec2016) 
    2222YearForcingInit=1958 
    23 YearForcingEnd=2015 
     23YearForcingEnd=2016 
    2424#============================================================== 
    2525 

  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA1_LIM3_PISCES_CMIP6/omip2/ia/COMP/pisces.card

    r3941 r3961  
    55PisFreq=1 
    66Offline_Mode=n 
     7Co2Anthr=n 
    78AtmCo2=2.8432e+02 
    89OutputLevel=1 
    … …  
    3031            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Ndep_input4MIPs/weights_CMIP_NCAR-CCMI_eORCA1_bilinear.nc, weights_2d_bilin.nc), \ 
    3132            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/par_fraction_gewex_clim90s00s_eORCA_R1.nc, par.orca.nc        ), \ 
    32             (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Solubility_T62_Mahowald_eORCA_R1.nc      , solubility.orca.nc ) 
    33  
     33            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Solubility_T62_Mahowald_eORCA_R1.nc   , solubility.orca.nc ), \ 
     34            (${R_IN}/OCE/NEMO/FORCINGS/GHG/CFCs_CDIAC.dat                                                                         , CFCs_CDIAC.dat     ), \ 
     35            (${R_IN}/OCE/NEMO/FORCINGS/GHG/CO2_OMIP6_1700_2014.txt                                                                , atcco2.txt         ) 
    3436 
    3537 
    … …  
    4042        (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA1_LIM3_PISCES/EXP00/field_def_nemo-pisces.xml   , field_def_nemo-pisces.xml  ), \ 
    4143        (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA1_LIM3_PISCES/EXP00/field_def_nemo-inerttrc.xml , field_def_nemo-inerttrc.xml), \ 
    42         (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA1_LIM3_PISCES/EXP00/CFCs_CDIAC.dat              , CFCs_CDIAC.dat             ), \ 
    4344        (${SUBMIT_DIR}/PARAM/NAMELIST/${RESOL_OCE}/namelist_top_cfg                            , namelist_top_cfg           ), \ 
    4445        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_pisces_cfg                                      , namelist_pisces_cfg        ), \ 
    4546        (${SUBMIT_DIR}/PARAM/NAMELIST/namelist_cfc_cfg                                         , namelist_cfc_cfg           ), \ 
    46         (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-pisces.xml                                      , file_def_nemo-pisces.xml   ) 
     47        (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-pisces_cmip6.xml                                , file_def_nemo-pisces.xml   ) 
    4748 
    4849 

  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA1_LIM3_PISCES_CMIP6/omip2/ia/config.card

    r3941 r3961  
    2828#-- Begin and end of Job 
    2929#-- "YYYY-MM-DD" 
    30 DateBegin=1958-01-01 
    31 DateEnd=2015-12-31 
     30DateBegin=1722-01-01 
     31DateEnd=2016-12-31 
    3232#============================ 
    3333#-- 1Y, 1M, 5D, 1D 
    … …  
    5353ICE= ("", "", "") 
    5454MBG= ("", "", "") 
    55 IOS= (xios_server.exe, xios.x, 1MPI) 
     55IOS= (xios_server.exe, xios.x, 4MPI, 2NOD) 
    5656#======================================================================== 
    5757#D-- Restarts - 

  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA1_OFF_PISCES/ia/COMP/pisces.card

    r3885 r3961  
    55version=v3.6_stable 
    66Offline_Mode=y 
     7Co2Anthr=n 
    78PisFreq=4 
    89AtmCo2=2.8432e+02 
    … …  
    4041             (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${pisces_UserChoices_version}/Fer_PISCES_monthly_eORCA_R1.nc            , . ), \ 
    4142             (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${pisces_UserChoices_version}/NO3_WOA2009_monthly_eORCA_R1.nc           , . ), \a 
    42              (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${pisces_UserChoices_version}/Dust_inca_LOI/DUST_INCA_LOI6012-histAER_1M_${year}.nc, dust.orca.nc       ), \ 
     43             (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${pisces_UserChoices_version}/Dust_inca_LOI/DUST_INCA_LOI6012-histAER_1M_1850.nc, dust.orca.nc       ), \ 
    4344             (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${pisces_UserChoices_version}/Dust_inca_LOI/weights_LMD144142_eORCA1_bilinear.nc , weights_lmd144142_bilin.nc ), \ 
    4445             (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${pisces_UserChoices_version}/pmarge_etopo_eORCA_R1.nc              , bathy.orca.nc      ), \ 
    4546             (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${pisces_UserChoices_version}/river_global_news_eORCA_R1.nc         , river.orca.nc      ), \ 
    46              (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${pisces_UserChoices_version}/Ndep_input4MIPs/Ndep_input4MIPs_surfaceFluxes_CMIP_NCAR-CCMI-2-0_gn_${year}01-${year}12-clim.nc, ndeposition.orca.nc), \ 
     47             (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${pisces_UserChoices_version}/Ndep_input4MIPs/Ndep_input4MIPs_surfaceFluxes_CMIP_NCAR-CCMI-2-0_gn_185001-185012-clim.nc, ndeposition.orca.nc), \ 
    4748             (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${pisces_UserChoices_version}/Ndep_input4MIPs/weights_CMIP_NCAR-CCMI_eORCA1_bilinear.nc, weights_2d_bilin.nc), \ 
    4849             (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${pisces_UserChoices_version}/par_fraction_gewex_clim90s00s_eORCA_R1.nc, par.orca.nc        ), \ 

  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA2_LIM3_PISCES/core/clim/COMP/pisces.card

    r3888 r3961  
    55PisFreq=1 
    66Offline_Mode=n 
     7Co2Anthr=n 
    78AtmCo2=2.8432e+02 
    89OutputLevel=10 

  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA2_LIM3_PISCES/core/ia/COMP/pisces.card

    r3888 r3961  
    55PisFreq=1 
    66Offline_Mode=n 
     7Co2Anthr=n 
    78AtmCo2=2.8432e+02 
    89OutputLevel=10 

  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA2_LIM3_PISCES/dfs5/ia/COMP/pisces.card

    r3888 r3961  
    55PisFreq=1 
    66Offline_Mode=n 
     7Co2Anthr=n 
    78AtmCo2=2.8432e+02 
    89OutputLevel=10 

  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA2_LIM3_PISCES/jra/ia/COMP/pisces.card

    r3888 r3961  
    55PisFreq=1 
    66Offline_Mode=n 
     7Co2Anthr=n 
    78AtmCo2=2.8432e+02 
    89OutputLevel=10 

  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA2_OFF_PISCES/clim/COMP/pisces.card

    r3885 r3961  
    55version=v3.6_stable 
    66Offline_Mode=y 
     7Co2Anthr=n 
    78PisFreq=4 
    89AtmCo2=2.8432e+02 

  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA2_OFF_PISCES/ia/COMP/pisces.card

    r3885 r3961  
    55version=v3.6_stable 
    66Offline_Mode=y 
     7Co2Anthr=n 
    78PisFreq=4 
    89AtmCo2=2.8432e+02 

  • CONFIG/UNIFORM/v6/NEMO_v6/GENERAL/DRIVER/opa9.driver

    r3884 r3961  
    7575       (( year_forcing_p1 = ${year_forcing} + 1)) 
    7676       (( i = 0 )) 
    77         while [ $i -lt ${NbFileInter} ] ; do 
    78            eval file=${opa9_UserChoices_ListForcing[$i]} 
    79            IGCM_sys_Get ${opa9_UserChoices_R_FORCING}/${file}_${year_forcing_m1}.nc  ${file}_y${year_m1}.nc 
    80            IGCM_sys_Get ${opa9_UserChoices_R_FORCING}/${file}_${year_forcing}.nc     ${file}_y${year}.nc 
    81            IGCM_sys_Get ${opa9_UserChoices_R_FORCING}/${file}_${year_forcing_p1}.nc  ${file}_y${year_p1}.nc 
    82            (( i = i + 1 )) 
    83         done 
     77       while [ $i -lt ${NbFileInter} ] ; do 
     78          eval file=${opa9_UserChoices_ListForcing[$i]} 
     79          IGCM_sys_Get ${opa9_UserChoices_R_FORCING}/${file}_${year_forcing_m1}.nc  ${file}_y${year_m1}.nc 
     80          IGCM_sys_Get ${opa9_UserChoices_R_FORCING}/${file}_${year_forcing}.nc     ${file}_y${year}.nc 
     81          IGCM_sys_Get ${opa9_UserChoices_R_FORCING}/${file}_${year_forcing_p1}.nc  ${file}_y${year_p1}.nc 
     82          (( i = i + 1 )) 
     83       done 
     84 
     85       if [ X"$( echo ${config_UserChoices_ExpType} | grep CMIP6 )" != "X" ] ; then 
     86          IGCM_sys_Get ${R_IN}/CMIP6/${config_UserChoices_LongName}/${config_UserChoices_ModelName}/${config_UserChoices_ExperimentName}/${config_UserChoices_Member}/${year_forcing}/dr2xml_nemo.xml  dr2xml_opa9.xml 
     87       fi 
    8488    fi 
    8589 

  • CONFIG/UNIFORM/v6/NEMO_v6/GENERAL/DRIVER/pisces.driver

    r3854 r3961  
    172172   fi 
    173173 
     174   if [ X"${pisces_UserChoices_Co2Anthr}" = X"y" ] ; then 
     175      LCO2INT=.TRUE. 
     176   else 
     177      LCO2INT=.FALSE. 
     178   fi 
    174179   ##-- Update namelist_top_cfg and namelist_pisces_cfg 
    175180    IGCM_comp_modifyNamelist blocker    namelist_top_cfg     ln_rsttr  ${TOP_LRSTTR} 
    176181    IGCM_comp_modifyNamelist blocker    namelist_top_cfg     nn_rsttr  ${TOP_NRSTTR} 
     182    IGCM_comp_modifyNamelist blocker    namelist_pisces_cfg  ln_co2int ${LCO2INT} 
    177183    IGCM_comp_modifyNamelist blocker    namelist_pisces_cfg  atcco2    ${pisces_UserChoices_AtmCo2} 
     184    IGCM_comp_modifyNamelist blocker    namelist_pisces_cfg  nrdttrc   ${pisces_UserChoices_PisFreq} 
    178185    IGCM_comp_modifyNamelist blocker    namelist_pisces_cfg  nn_pisdmp ${OPA_NPDT_YEAR} 
    179     IGCM_comp_modifyNamelist blocker    namelist_pisces_cfg  nrdttrc   ${pisces_UserChoices_PisFreq} 
    180186 
    181187  

  • CONFIG/UNIFORM/v6/NEMO_v6/GENERAL/DRIVER/xios.driver

    r3941 r3961  
    1919    IGCM_comp_modifyXmlFile force iodef.xml using_server NONE true 
    2020 
     21    # Activate 2nd server level for CMIP6 type experiments (CMIP6 workflow) 
     22    if [ X"$( echo ${config_UserChoices_ExpType} | grep CMIP6 )" != "X" ] ; then 
     23       IGCM_comp_modifyXmlFile force iodef.xml using_server2 NONE true 
     24    fi 
     25 
    2126    IGCM_debug_PopStack "IOS_Update" 
    2227} 

  • CONFIG/UNIFORM/v6/NEMO_v6/GENERAL/PARAM/NAMELIST/namelist_pisces_cfg

    r3854 r3961  
    55&nampisext     !   air-sea exchange 
    66!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 
    7    atcco2     =  _AUTO_: DEFAULT=287.    ! Constant value atmospheric pCO2 - ln_co2int = F 
     7   ln_co2int  = _AUTO_: DEFAULT=.false. ! read atm pco2 from a file (T) or constant (F) 
     8   atcco2     = _AUTO_: DEFAULT=278.    ! Constant value atmospheric pCO2 - ln_co2int = F 
     9   clname     =  'atcco2.txt'  ! Name of atm pCO2 file - ln_co2int = T 
     10   nn_offset  =  0       ! Offset model-data start year - ln_co2int = T 
     11!                        ! If your model year is iyy, nn_offset=(years(1)-iyy) 
     12!                        ! then the first atmospheric CO2 record read is at years(1) 
    813/ 
    914!''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 

  • CONFIG/UNIFORM/v6/NEMO_v6/GENERAL/PARAM/XML/file_def_nemo-lim3_cmip6.xml

    r3941 r3961  
    1010  --> 
    1111     
    12     <file_definition type="one_file" name="@expname@_@freq@" sync_freq="1d" min_digits="4" > 
     12    <file_definition type="one_file" name="@expname@_@freq@" sync_freq="1d" min_digits="4" compression_level="4" > 
    1313     
    1414      <file_group id="1ts_lim" output_freq="1ts"  output_level="10" enabled=".TRUE."/> <!-- 1 time step files --> 

  • CONFIG/UNIFORM/v6/NEMO_v6/GENERAL/PARAM/XML/file_def_nemo-opa_cmip6.xml

    r3941 r3961  
    99    --> 
    1010    
    11     <file_definition type="one_file" name="@expname@_@freq@" sync_freq="1d" min_digits="4" > 
     11    <file_definition type="one_file" name="@expname@_@freq@" sync_freq="1d" min_digits="4" compression_level="4" > 
    1212     
    1313      <file_group id="1ts_opa" output_freq="1ts"  output_level="10" enabled=".TRUE."/> <!-- 1 time step files --> 

  • CONFIG/UNIFORM/v6/NEMO_v6/GENERAL/PARAM/XML/iodef.xml

    r3941 r3961  
    1414 
    1515    <variable_definition> 
     16 
     17         <variable_group id="server"> 
     18            <variable id="using_server2" type="bool">false</variable> 
     19            <variable id="ratio_server2" type="int">50</variable> 
     20         </variable_group> 
    1621 
    1722        <variable_group id="buffer"> 
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