Changeset 4611 for CONFIG/UNIFORM

Timestamp:

07/10/19 09:14:20 (5 years ago)

Author:

cetlod

Message:

Improvment of compilation script : Add NEMO configurations & OASIS-MCT. Still a preliminary version

File:

• CONFIG/UNIFORM/v6/IPSLCM6.2/compile_ipslcm6.sh (modified) (11 diffs)

CONFIG/UNIFORM/v6/IPSLCM6.2/compile_ipslcm6.sh

@@ -11 +11 @@
 modipsl=$submitdir/../..
 arch_path=$submitdir/ARCH 
+mysrc_path=$submitdir/SOURCES
 
 #### Set default options 
@@ -18 +19 @@
 resol_oce=ORCA1
 # Version of ice model lim2/lim3
-version_lim=lim3
+icemodel=lim3
+# Coupled with ocean biogeochemistry (y/n)
+oceanbio=y
 # Version ESM CO2: CO2 interactif ocean/atmosphere (y/n)
 esmco2=n
@@ -31 +34 @@
 export fcm_arch parallel xios
 full_flag=""
+full_nemo=n
 # Default netcdf_lib is used for XIOS but can be change by argument
 netcdf_lib=""
@@ -53 +57 @@
 
 
-Options: [LR / VLR / MR025] Model resolution, choose only one. Default: LR.
+Options: [LR / VLR / MR1 / MR025] Model resolution, choose only one. Default: LR.
          [ESMCO2] Compile IPSLCM6 for CO2 interactif ocean/atmosphere.
          [-full] Full recompilation of all components. This option can be added to all other options.
+         [-cleannemo] Full recompilation of NEMO component  only.
          [-debug / -dev / -prod] Level of optimization. One of these can be added to all other compile options. Default: -prod.
 
@@ -68 +73 @@
 
 Example 3: Compilation of IPSLCM6 for ESM CO2
-./compile_ipslcm6.sh ESMCO2
+./compile_ipslcm6.sh ESMCO2 -cleannemo
 
 Example 4: Default resoltuion (LR) compiled in debug mode
@@ -82 +87 @@
             exit;;
 
-        "VLR")
-            resol_atm=96x95x39; resol_oce=ORCA1 ; version_lim=lim2;  shift ;; 
-
-        "LR")
-            resol_atm=144x142x79; resol_oce=ORCA1 ; version_lim=lim3; shift ;; 
-
-        "MR025")
-            resol_atm=256x256x79; resol_oce=ORCA025 ; version_lim=lim3;  shift ;; 
-
-        "ESMCO2")
+   "VLR")
+        resol_atm=96x95x39; resol_oce=ORCA2 ; icemodel=lim2; oceanbio=y; shift ;;
+
+    "LR")
+        resol_atm=144x142x79; resol_oce=ORCA1 ; icemodel=lim3; oceanbio=y; shift ;;
+
+    "MR1")
+        resol_atm=256x256x79; resol_oce=ORCA1 ; icemodel=lim3; oceanbio=y; shift ;;
+
+    "MR025")
+        resol_atm=256x256x79; resol_oce=ORCA025 ; icemodel=lim3; oceanbio=n;   shift ;;
+
+    "ESMCO2")
             esmco2=y;  shift ;; 
 
@@ -109 +117 @@
             optmode=prod ; shift ;;
 
-        "-full")
-            full_flag="-full"; shift ;;
+    "-full")
+        full_flag="-full"; full_nemo=y ; shift ;;
+
+    "-cleannemo")
+        full_nemo=y ; shift ;;
         
         "-netcdf_lib_seq")
@@ -122 +133 @@
 
 echo "Following options are set in current compiling:" >> $outfile 
-echo "   resol_atm=${resol_atm}, resol_oce=${resol_oce}, $version_lim=${version_lim}" >> $outfile 
+echo "   resol_atm=${resol_atm}, resol_oce=${resol_oce}, icemodel=${icemodel}, withpisces=${pisces}" >> $outfile 
 echo "   esmco2=${esmco2}" >> $outfile 
 echo "   optmode = $optmode, parallel = $parallel, fcm_arch = $fcm_arch, full_flag=$full_flag" >> $outfile 
@@ -192 +203 @@
 fi
 
-## 2.2 Compile xios
+## 2.2 Compile oasis3-mct
+oasis_dir=$modipsl/oasis3-mct
+echo; echo "NOW COMPILE OASIS3-MCT"
+echo >> $outfile ; echo " NOW COMPILE OASIS3-MCT"   >> $outfile
+cd $oasis_dir/util/make_dir  ; cp $mysrc_path/OASIS3-MCT/make_${fcm_arch} make.inc  ; make -f TopMakefileOasis3 ;
+
+## 2.3 Compile xios
 cd $modipsl/modeles/XIOS
 echo; echo "NOW COMPILE XIOS"
@@ -212 +229 @@
 
 
-## 2.3 Compile orchidee
+## 2.4 Compile orchidee
 cd $modipsl/modeles/ORCHIDEE
 echo; echo "NOW COMPILE ORCHIDEE"
@@ -226 +243 @@
 
 
-## 2.4 Compile LMDZ for regular latlon configuration
+## 2.5 Compile NEMO
+nemo_root=$modipsl/modeles/NEMOGCM/CONFIG
+if [ ${icemodel} == lim2 ] ; then
+   addkeys="key_lim2_vp key_diahth key_oasis3"
+   delkeys="key_nosignedzero key_mpp_rep"
+else
+   addkeys="key_top key_pisces key_age key_cfc key_cpl_carbon_cycle key_gas key_oasis"
+   if [ ${oceanbio} == y ] ; then
+      if [ ${esmco2} == y ] ; then
+         delkeys="key_nosignedzero key_mpp_rep"
+      else
+         delkeys="key_nosignedzero key_mpp_rep key_cpl_carbon_cycle key_gas"
+      fi
+   else
+      delkeys="key_nosignedzero key_mpp_rep key_top key_pisces key_cfc key_age key_cpl_carbon_cycle key_gas"
+   fi
+fi
+
+if [ ${oceanbio} == n ] ; then
+   echo; echo "NOW COMPILE NEMO. Resolution = ${resol_oce} with icemodel ${icemodel} and without PISCES"
+   echo >> $outfile ; echo " NOW COMPILE NEMO. Resolution = ${resol_oce} with icemodel ${icemodel} and without PISCES"   >> $outfile
+else
+   echo; echo "NOW COMPILE NEMO. Resolution = ${resol_oce} with icemodel ${icemodel} and PISCES"
+   echo >> $outfile ; echo " NOW COMPILE NEMO. Resolution = ${resol_oce} with icemodel ${icemodel} and PISCES"   >> $outfile
+fi
+echo >> $outfile ; echo cd $nemo_root  >> $outfile
+echo >> $outfile ; echo cp $modipsl/config/IPSLCM6/SOURCES/NEMO/arch-${fcm_arch}.fcm ../ARCH/.   >> $outfile
+echo >> $outfile
+
+cd $nemo_root ; cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm ../ARCH/.
+
+if [ ${resol_oce} == ORCA2 ]   ; then  cfg_wrk=ORCA2_LIM_PISCES    ; fi
+if [ ${resol_oce} == ORCA1 ]   ; then  cfg_wrk=ORCA1_LIM3_PISCES    ; fi
+if [ ${resol_oce} == ORCA025 ] ; then  cfg_wrk=ORCA025_LIM3_PISCES  ; fi
+
+echo cp $modipsl/config/IPSLCM6/SOURCES/NEMO/*.*90 $nemo_root/$cfg_wrk/MY_SRC/   >> $outfile
+echo >> $outfile
+cp $mysrc_path/NEMO/*.*90  $nemo_root/$cfg_wrk/MY_SRC/
+
+if [ $full_nemo == y ] ; then
+   echo ./makenemo -m ${fcm_arch} -n $cfg_wrk clean   >> $outfile
+   echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -j16 add_key "$addkeys"  del_key "$delkeys"   >> $outfile
+   echo >> $outfile
+   ./makenemo -m ${fcm_arch} -n $cfg_wrk clean  >> $outfile 2>&1
+   ./makenemo -m ${fcm_arch} -n $cfg_wrk -j16 add_key "$addkeys"  del_key "$delkeys"  >> $outfile 2>&1
+else
+   echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -j16 add_key "$addkeys"  del_key "$delkeys"   >> $outfile
+   echo >> $outfile
+   ./makenemo -m ${fcm_arch} -n $cfg_wrk -j16 add_key "$addkeys"  del_key "$delkeys"  >> $outfile 2>&1
+fi
+
+# Test if compiling finished
+if [[ $? != 0 ]] ; then
+    echo "THERE IS A PROBLEM IN NEMO COMPILATION - STOP"
+    exit
+fi
+
+echo
+echo "copy nemo executable to modipsl/bin"
+if [ -f $nemo_root/$cfg_wrk/BLD/bin/nemo.exe ]                       ;  then cp $nemo_root/$cfg_wrk/BLD/bin/nemo.exe $modipsl/bin/opa     ; fi
+if [ -f $nemo_root/$cfg_wrk/BLD/bin/nemo.exe ] && [ ${esmco2} == y ] ;  then cp $nemo_root/$cfg_wrk/BLD/bin/nemo.exe $modipsl/bin/opa.esm ; fi
+
+
+## 2.6 Compile LMDZ for regular latlon configuration
 cd $modipsl/modeles/LMDZ
 # Compile LMDZ regular lat-lon exectuable