Ignore:
Timestamp:
06/03/24 15:18:06 (6 weeks ago)
Author:
jgipsl
Message:

Update all experiments using ORCHIDEE_4 according to settings choosen in offline mode by ORCHIDEE project groupe.

  • All experiements follow the set up accoring to the TRENDY protocol: changes in nitrogen input files and vegetation file
  • update parameter files for ORCHIDEE_4 according to changes in offline setup
  • added new experiments for ORCHIDEE_4 LMDZOR/clim_pdControl.orch4 and IPSLCM-reg/piControl_TEST.orch4
Location:
CONFIG/UNIFORM/v7/IPSLCM7/EXPERIMENTS/ICOLMDZOR/clim_pdControl.orch4/COMP
Files:
2 edited

Legend:

Unmodified
Added
Removed

  • CONFIG/UNIFORM/v7/IPSLCM7/EXPERIMENTS/ICOLMDZOR/clim_pdControl.orch4/COMP/orchidee.card

    r6855 r6870  
    1919# ROUTING=standard   => in orchidee.def RIVER_ROUTING=y and ROUTING_METHOD=standard 
    2020# ROUTING=simple     => in orchidee.def RIVER_ROUTING=y and ROUTING_METHOD=simple 
     21# ROUTING=native     => in orchidee.def RIVER_ROUTING=y and ROUTING_METHOD=native (note: routing_simple.nc is used also for this case) 
    2122# ROUTING=off        => in orchidee.def RIVER_ROUTING=n  
    2223ROUTING=simple 
    … …  
    2728# output_level_filename=12    : highest level which will output all variables 
    2829# output_level_filename=NONE  : deactivate the file 
    29 output_level_sechiba_history = 11 
     30output_level_sechiba_history = 2 
    3031output_level_sechiba_out_2 = NONE 
    31 output_level_sechiba_history_4dim = 11 
     32output_level_sechiba_history_4dim = NONE 
    3233 
    33 # Specify output frequency for each file [1y, 1mo, 1d, 3h, 1h, 1ts] 
     34# Specify output frequency for each file [1y, 1mo, 1d, 10800s, 1ts] 
    3435# Settings using WriteFrequency in config.card is not longer used 
    3536output_freq_sechiba_history = 1mo 
    36 output_freq_sechiba_out_2 = 3h 
     37output_freq_sechiba_out_2 = 1d 
    3738output_freq_sechiba_history_4dim = 1mo 
    3839 
    39  
    4040[InitialStateFiles] 
    41 List=   (${R_IN}/SRF/SOIL/soils_param_zobler_coord.nc, soils_param.nc ), \ 
    42         (${R_IN}/SRF/SOIL/soils_param_zobler_coord.nc, soilcolor.nc ), \ 
    43         (${R_IN}/SRF/SOIL/soil_bulk_and_ph.nc, .), \ 
    44         (${R_IN}/SRF/reftemp4.nc, reftemp.nc ), \ 
    45         (${R_IN}/SRF/cartepente2d_15min4.nc, cartepente2d_15min.nc) 
     41List=       (${R_IN}/SRF/SOIL/soil_bulk_and_ph.nc, .), \ 
     42            (${R_IN}/SRF/SOIL/soils_param_usda_with_clay_oxisol_coord.nc, soils_param.nc), \ 
     43            (${R_IN}/SRF/SOIL/soils_param_zobler_coord.nc, soilcolor.nc), \ 
     44            (${R_IN}/SRF/cartepente2d_15min4.nc, cartepente2d_15min.nc), \ 
     45            (${R_IN}/SRF/reftemp4.nc, reftemp.nc), \ 
     46            (${R_IN}/SRF/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v2023.1/PFTmap_2000.nc, PFTmap.nc) 
    4647 
    4748[BoundaryFiles] 
    48 List= () 
    49 ListNonDel= (${R_IN}/SRF/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v2/PFTmap_2000.nc, PFTmap.nc),\ 
    50             (${R_IN}/SRF/ROUTING/routing_simple.nc, .) 
     49List=   () 
     50ListNonDel= (${R_IN}/SRF/ROUTING/routing_simple.nc, .) 
    5151 
    5252[SmoothFiles] 
    … …  
    5454 
    5555[ParametersFiles] 
    56 List=   (${SUBMIT_DIR}/PARAM/ORCHIDEE/orchidee.def_v4, orchidee.def)   ,\ 
     56List=   (${SUBMIT_DIR}/PARAM/ORCHIDEE/orchidee.def_v4, orchidee.def)   ,\ 
    5757        (${SUBMIT_DIR}/PARAM/ORCHIDEE/orchidee_pft.def_${DefSuffix}_v4, orchidee_pft.def) ,\ 
    58         (${MODIPSL}/modeles/ORCHIDEE_4/src_xml/file_def_orchidee.xml, .)  ,\ 
    59         (${MODIPSL}/modeles/ORCHIDEE_4/src_xml/context_input_orchidee.xml, .) ,\ 
    60         (${MODIPSL}/modeles/ORCHIDEE_4/src_xml/context_orchidee.xml, .)   ,\ 
    61         (${MODIPSL}/modeles/ORCHIDEE_4/src_xml/context_routing_orchidee.xml, .)   ,\ 
    62         (${MODIPSL}/modeles/ORCHIDEE_4/src_xml/field_def_orchidee.xml, .) 
     58        (${MODIPSL}/modeles/ORCHIDEE_4/src_xml/file_def_orchidee.xml, .)  ,\ 
     59        (${MODIPSL}/modeles/ORCHIDEE_4/src_xml/context_input_orchidee.xml, .) ,\ 
     60        (${MODIPSL}/modeles/ORCHIDEE_4/src_xml/context_orchidee.xml, .)   ,\ 
     61        (${MODIPSL}/modeles/ORCHIDEE_4/src_xml/context_routing_orchidee.xml, .)   ,\ 
     62        (${MODIPSL}/modeles/ORCHIDEE_4/src_xml/field_def_orchidee.xml, .) 
    6363 
    6464[RestartFiles] 
    65 List=   (sechiba_rest_out.nc, sechiba_rest.nc, sechiba_rest_in.nc) ,\ 
     65List=   (sechiba_rest_out.nc, sechiba_rest.nc, sechiba_rest_in.nc) ,\ 
    6666        (routing_restart.nc, routing_restart.nc, routing_start.nc) 
    6767 
    6868[OutputText] 
    69 List=   (out_orchidee*, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, context_routing_orchidee.xml, context_input_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc) 
     69List=   (out_orchidee*, orchidee.def, orchidee_pft.def, used_orchidee.def, used_orchidee_pft.def, iodef.xml, context_orchidee.xml, context_input_orchidee.xml, context_routing_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc) 
    7070 
    7171[OutputFiles] 
    72 List=   (sechiba_history.nc,   ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \ 
    73         (sechiba_history_4dim.nc,${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history_4dim.nc, NONE), \ 
    74         (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE), \ 
     72List=   (sechiba_history.nc,      ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \ 
     73        (sechiba_history_4dim.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history_4dim.nc, NONE), \ 
     74        (sechiba_out_2.nc,        ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE), \ 
    7575        (ORCHIDEE_interp_diag.nc, ${R_OUT_SRF_O_D}/${PREFIX}_ORCHIDEE_interp_diag.nc, NONE), \ 
    76         (forcing_by_ORCHIDEE.nc,  ${R_OUT_SRF_O_H}/${PREFIX}_forcing_by_ORCHIDEE.nc,  NONE) 
     76        (forcing_by_ORCHIDEE.nc,  ${R_OUT_SRF_O_H}/${PREFIX}_forcing_by_ORCHIDEE.nc, NONE), \ 
     77        (diag_routing.nc,         ${R_OUT_SRF_O_D}/${PREFIX}_1D_sechiba_routing.nc, NONE),\ 
     78        (diag_routing_r.nc,       ${R_OUT_SRF_O_D}/${PREFIX}_1D_sechiba_routing_r.nc, NONE) 
     79 
    7780 
    7881[Post_1M_sechiba_history] 
    7982Patches = () 
    8083GatherWithInternal = (lon, lat, time_counter, Areas, Contfrac, time_centered, time_centered_bounds) 
    81 TimeSeriesVars2D = (nobiofrac, alb_nir, alb_vis, evap, fluxlat, fluxsens, netrad, qair, rain, runoff, snow, snownobio, snowf, frac_snow, subli, tair, temp_sol, tsol_max, tsol_min, drainage,mrsos, mrso, mrros, mrro, prveg, evspsblveg, evspsblsoi, tran, treeFrac, grassFrac, cropFrac, baresoilFrac, residualFrac, TWBR, riverflow, coastalflow, DelSoilMoist_daily, DelIntercept_daily, DelSWE_daily, delstock_routing_daily, snowmelt, LAImean, transpir, evapnu) 
     84TimeSeriesVars2D = (nobiofrac, alb_nir, alb_vis, evap, fluxlat, fluxsens, rain, runoff, snow, snownobio, snowf, frac_snow, subli, tair, temp_sol, drainage, mrsos, mrso, TWBR, riverflow, coastalflow, DelSoilMoist_daily, DelIntercept_daily, DelSWE_daily, delstock_routing_daily, LAImean, transpir, evapnu, lwdown, swdown, gppCrop, rhCrop) 
    8285ChunckJob2D = NONE 
    83 TimeSeriesVars3D = (lai, maxvegetfrac, vegetfrac, ptn, nee) 
     86TimeSeriesVars3D = (lai, maxvegetfrac, vegetfrac, nee, gpp, growth_resp, hetero_resp, humrel, inter, maint_resp, npp, precisol) 
    8487ChunckJob3D = NONE 
    8588Seasonal = ON 
    … …  
    8891Patches = () 
    8992GatherWithInternal = (lon, lat, time_counter, Areas, Contfrac, time_centered, time_centered_bounds) 
    90 TimeSeriesVars2D = (mrsos, mrro) 
    91 ChunckJob2D = 50Y 
    92 TimeSeriesVars3D = (ptn) 
    93 ChunckJob3D = 10Y 
     93TimeSeriesVars2D = () 
     94ChunckJob2D = NONE 
     95TimeSeriesVars3D = (snowdz, snowtemp, snowrho) 
     96ChunckJob3D = NONE 
    9497Seasonal = OFF 
    9598 

  • CONFIG/UNIFORM/v7/IPSLCM7/EXPERIMENTS/ICOLMDZOR/clim_pdControl.orch4/COMP/stomate.card

    r6406 r6870  
    1212STOMATE_IMPOSE_CN=n 
    1313 
    14  
    1514# Specify output level for output files 
    1615# Only the files stomate_history.nc and stomate_ipcc_history.nc can be set here. 
    1716# output_level_filname=0     : lowest level writing only variables needed for the monitoring 
    18 # output_level_filname=10    : highest level which will output all variables 
     17# output_level_filname=1     : highest level which will output all variables 
    1918# output_level_filname=NONE  : deactivate the file 
    20 output_level_stomate_history = 10 
    21 output_level_stomate_ipcc_history = 1 
     19output_level_stomate_history = 0  
     20output_level_stomate_ipcc_history = 0 
    2221 
    2322# Specify output frequency for each file [1y, 1mo, 1d] 
    … …  
    2625output_freq_stomate_ipcc_history = 1mo 
    2726 
    28  
    2927[InitialStateFiles] 
    30 # cnleaf_map.nc is needed if STOMATE_IMPOSE_CN=y 
    31 #List=    (${R_IN}/SRF/NITROGEN/CN_LEAF/cn_leaf_1850_v0.nc, cnleaf_map.nc) 
    32  
    33 # Following files are needed if STOMATE_IMPOSE_CN=n 
    34 List=   (${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/synthetic/historical/Nfer_pasture_2000.nc, nfert_pasture.nc) ,\ 
    35      (${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/synthetic/historical/Nfer_cropland_2000.nc, nfert_cropland.nc) ,\ 
    36      (${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/manure/historical/Nmanure_pasture_2000.nc, nmanure_pasture.nc) ,\ 
    37      (${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/manure/historical/Nmanure_cropland_2000.nc, nmanure_cropland.nc) ,\ 
    38      (${R_IN}/SRF/NITROGEN/N_DEPOSITION/CCMI_ndep/historical/CCMI_ndep_nhx_2000.nc, ndep_nhx.nc), \ 
    39      (${R_IN}/SRF/NITROGEN/N_DEPOSITION/CCMI_ndep/historical/CCMI_ndep_noy_2000.nc, ndep_noy.nc), \ 
    40      (${R_IN}/SRF/NITROGEN/BNF/bnf_1850.nc, bnf.nc) 
     28List=   (${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP2/synthetic/historical/nfer_crop_nh4_2000.nc, Nfert_ammo_cropland.nc) ,\ 
     29        (${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP2/synthetic/historical/nfer_crop_no3_2000.nc, Nfert_nitr_cropland.nc) ,\ 
     30        (${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP2/synthetic/historical/nfer_pas_nh4_2000.nc,  Nfert_ammo_pasture.nc) ,\ 
     31        (${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP2/synthetic/historical/nfer_pas_no3_2000.nc,  Nfert_nitr_pasture.nc) ,\ 
     32        (${R_IN}/SRF/NITROGEN/N_DEPOSITION/CMIP6.2/historical/nhx__2000.nc, Nammonium.nc), \ 
     33        (${R_IN}/SRF/NITROGEN/N_DEPOSITION/CMIP6.2/historical/noy__2000.nc, Nnitrate.nc), \ 
     34        (${R_IN}/SRF/NITROGEN/BNF/bnf_1850.nc, bnf.nc) 
    4135 
    4236[BoundaryFiles] 
    43 List=   () 
     37List= () 
    4438ListNonDel= () 
    4539 
    … …  
    5852[OutputFiles] 
    5953List=   (stomate_history.nc,      ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_history.nc,      Post_1M_stomate_history),    \ 
    60         (stomate_ipcc_history.nc, ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_ipcc_history.nc, Post_1M_stomate_ipcc_history) 
     54        (stomate_ipcc_history.nc, ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_ipcc_history.nc, Post_1M_stomate_ipcc_history), \ 
     55        (stomate_history_4dim.nc, ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_history_4dim.nc, NONE), \ 
     56        (stomate_fixed_dia.nc, ${R_OUT_SBG_O_Y}/${PREFIX}_1Y_stomate_fixed_dia.nc, NONE) 
    6157 
    62 [Post_1M_stomate_history] 
    63 Patches = () 
    64 GatherWithInternal = (lon, lat, Areas, time_counter, time_centered, time_centered_bounds) 
    65 TimeSeriesVars2D = (T2M_MONTH,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE) 
     58[Post_1Y_stomate_history] 
     59Patches= () 
     60GatherWithInternal= (lon, lat, time_counter, Areas, CONTFRAC) 
     61TimeSeriesVars2D= (T2M_MONTH,RESOLUTION_X,RESOLUTION_Y,FLUX_PROD_S_LCC_c,FLUX_PROD_M_LCC_c,FLUX_PROD_L_LCC_c,FLUX_PROD_S_HARVEST_c,FLUX_PROD_M_HARVEST_c,FLUX_PROD_L_HARVEST_c) 
    6662ChunckJob2D = NONE 
    67 TimeSeriesVars3D = (LAI,VEGET_COV_MAX,NPP,GPP,HET_RESP,MAINT_RESP,GROWTH_RESP,AGE,HEIGHT,TOTAL_M,TOTAL_BM_LITTER,TOTAL_SOIL_CARB,CO2_FIRE,TOTAL_TURN,WOOD_HARVEST_PFT) 
     63TimeSeriesVars3D= (LAI_MEAN,VEGET_MAX,NPP,GPP,HET_RESP,MAINT_RESP,GROWTH_RESP,TOTAL_M_n,TOTAL_M_c,TOTAL_BM_LITTER_c,TOTAL_BM_LITTER_n,ADAPTATION,REGENERATION,SOIL_ACTIVE_c,SOIL_ACTIVE_n,SOIL_SLOW_c,SOIL_SLOW_n,SOIL_PASSIVE_c,SOIL_PASSIVE_n,SOIL_SURF_c,SOIL_SURF_n,LITTER_STR_AB_c,LITTER_STR_AB_n,LITTER_STR_BE_c,LITTER_STR_BE_n,LITTER_MET_AB_c,LITTER_MET_AB_n,LITTER_MET_BE_c,LITTER_MET_BE_n,LITTER_WOD_AB_c,LITTER_WOD_AB_n,LITTER_WOD_BE_c,LITTER_WOD_BE_n,TOTAL_TURN_c,TOTAL_TURN_n,LEAF_M_n,LEAF_M_c,N_UPTAKE_NO3,N_UPTAKE_NH4,NH3_EMISSION,N2_EMISSION,N2O_EMISSION,NOX_EMISSION,NBP_pool_c,NBP_flux_c,MBC_NBP1_c,MBC_NBP1_n,MBC_NBP2_c,MBC_NBP2_n) 
    6864ChunckJob3D = NONE 
    69 Seasonal = ON 
     65Seasonal=ON 
    7066 
    71 [Post_1M_stomate_ipcc_history] 
    72 Patches = () 
    73 GatherWithInternal = (lon, lat, Areas, time_counter, time_centered, time_centered_bounds) 
    74 TimeSeriesVars2D = (cVeg, cLitter, cSoil, cProduct, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep, fWoodharvest) 
     67[Post_1Y_stomate_ipcc_history] 
     68Patches= () 
     69GatherWithInternal= (lon, lat, time_counter, Areas, CONTFRAC) 
     70TimeSeriesVars2D=(cVeg, cLitter, cSoil, cProduct, cMassVariation, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp_c, nbp_n, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep_c, nep_n, fWoodharvest) 
    7571ChunckJob2D = NONE 
    76 TimeSeriesVars3D = () 
     72TimeSeriesVars3D=() 
    7773ChunckJob3D = NONE 
    78 Seasonal = ON 
     74Seasonal=ON 
     75 
Note: See TracChangeset for help on using the changeset viewer.