[Compatibility]
libIGCM=1.0

[UserChoices]
#==============================================================
#-- Name of directory for COMMON ACCOUNT at idris or CCRT
#-- available directories are:  v3, v3_1, v3_2
#-- related to NEMO_tag_revision (nemo_v3, nemo_v3_1, nemo_v3_2_beta)
#-- NOTE: if you use COMMON ACCOUNT you have to de-comment it
#OPA_version=v4_0_alpha
R_FORCING=${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}
mesh_mask=y 
#==============================================================

[InitialStateFiles]
List=   (${SUBMIT_DIR}/PARAM/EMPave_old.dat, EMPave_old.dat)


[BoundaryFiles]
List=	(${opa9_UserChoices_R_FORCING}/u_10.15JUNE2009_fill.nc            ,         .), \
        (${opa9_UserChoices_R_FORCING}/v_10.15JUNE2009_fill.nc            ,         .), \
        (${opa9_UserChoices_R_FORCING}/t_10.15JUNE2009_fill.nc            ,         .), \
        (${opa9_UserChoices_R_FORCING}/q_10.15JUNE2009_fill.nc            ,         .), \
        (${opa9_UserChoices_R_FORCING}/ncar_rad.15JUNE2009_fill.nc        ,         .), \
        (${opa9_UserChoices_R_FORCING}/ncar_rad.15JUNE2009_fill.nc        ,         .), \
        (${opa9_UserChoices_R_FORCING}/ncar_precip.15JUNE2009_fill.nc     ,         .), \
        (${opa9_UserChoices_R_FORCING}/ncar_precip.15JUNE2009_fill.nc     ,         .), \
        (${opa9_UserChoices_R_FORCING}/slp.15JUNE2009_fill.nc             ,         .), \
        (${opa9_UserChoices_R_FORCING}/weights_core_orca2_bilinear_noc.nc ,         .), \
        (${opa9_UserChoices_R_FORCING}/weights_core_orca2_bicubic_noc.nc  ,         .)

ListNonDel= (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/ahmcoef.nc, .), \
            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/ORCA_R2_zps_domcfg.nc, .), \
            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/potT_PHC3WOA_ORCA2_IOVI.nc, data_1m_potential_temperature_nomask.nc), \
            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Salt_corr_PHC3WOA09.nc, data_1m_salinity_nomask.nc), \
            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/geothermal_heating.nc, .),\
            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/runoff_core_monthly.nc, .),\
            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/sss_corr_PHC3WOA09.nc, sss_data.nc),\
            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/sst_PHC3WOA_ORCA2_IOVI.nc, sst_data.nc),\
            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/sali_ref_clim_monthly.nc, .),\
            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/chlorophyll.nc, .),\
            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/mixing_power_bot.nc, .),\
            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/mixing_power_pyc.nc, .),\
            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/mixing_power_cri.nc, .),\
            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/decay_scale_bot.nc, .),\
            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/decay_scale_cri.nc, .),\
            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/K1rowdrg.nc, .),\
            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/M2rowdrg.nc, .),\
            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/mask_itf.nc, .),\
            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/eddy_viscosity_2D.nc, .),\
            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/eddy_viscosity_3D.nc, .),\
            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/calving.nc, .)     ,\
            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/resto.nc, .)


[ParametersFiles]
List=   (${MODIPSL}/modeles/NEMOGCM/CONFIG/SHARED/namelist_ref                            , namelist_ref           ), \
        (${SUBMIT_DIR}/PARAM/namelist_${RESOL_OCE}${EXPTYPE}_cfg                          , namelist_cfg           ), \
        (${SUBMIT_DIR}/PARAM/file_def_nemo-opa.xml                                        , file_def_nemo-opa.xml  ), \
        (${MODIPSL}/modeles/NEMOGCM/CONFIG/SHARED/field_def_nemo-opa.xml                  , field_def_nemo-opa.xml ), \
        (${MODIPSL}/modeles/NEMOGCM/CONFIG/SHARED/domain_def_nemo.xml                     , domain_def_nemo.xml    ), \
        (${SUBMIT_DIR}/PARAM/context_nemo.xml                                             , context_nemo.xml       ), \
        (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA2_LIM3_PISCES/EXP00/iodef.xml              , iodef.xml              )

[RestartFiles]
List=   (${config_UserChoices_JobName}_${NEMO_END}_restart.nc,  restart.nc, restart.nc), \
	(${config_UserChoices_JobName}_icebergs_${NEMO_END}_restart.nc,  restart_icebergs.nc, restart_icebergs.nc), \
        (EMPave.dat,  EMPave.dat, EMPave_old.dat)

[OutputText]
List=   (ocean.output, solver.stat, STRAIT.dat, namelist_ref, namelist_cfg )

[OutputFiles]
List=   (${PREFIX}_1y_scalar.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_scalar.nc     , NONE          ),\
        (${PREFIX}_1y_grid_T.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_T.nc     , NONE          ),\
        (${PREFIX}_1y_grid_U.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_U.nc     , NONE          ),\
        (${PREFIX}_1y_grid_V.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_V.nc     , NONE          ),\
        (${PREFIX}_1y_grid_W.nc    , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_W.nc     , NONE          ),\
        (${PREFIX}_1m_grid_T.nc    , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_T.nc     , NONE          ),\
        (${PREFIX}_5d_grid_T.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_T.nc     , NONE          ),\
	(${PREFIX}_1d_grid_T.nc    , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_T.nc     , NONE          ),\
        (mesh_mask.nc     , ${R_OUT_OCE_O}/${config_UserChoices_JobName}_mesh_mask.nc                       , NONE),\
        (runoffs.nc       , ${R_OUT_OCE_O}/${config_UserChoices_JobName}_runoffs.nc                         , NONE),\
        (damping.coeff.nc , ${R_OUT_OCE_O_D}/${PREFIX}_damping.coeff.nc                                     , NONE),\
        (output.abort.nc  , ${R_OUT_OCE_D}/${PREFIX}_output.abort.nc                                        , NONE),\
        (output.init.nc   , ${R_OUT_OCE_O_I}/${config_UserChoices_JobName}_${PeriodDateBegin}_output.init.nc, NONE)

# Monthly analysis
#
[Post_1M_scalar]
Patches = ()
GatherWithInternal = (time_counter, time_centered, time_centered_bounds, time_counter)
TimeSeriesVars2D = (masso, volo, zosga, zossga, zostoga, thetaoga, soga)
ChunckJob2D = NONE
TimeSeriesVars3D = ()
ChunckJob3D = NONE
Seasonal=OFF

[Post_1M_grid_T]
Patches = ()
GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds)
TimeSeriesVars2D = (zos, zossq, tos, sos, tossq, omlmax, mldkz5, mldr10_1, nshfls, rsntds, rsds, friver, hc300, wfo)
ChunckJob2D = NONE
TimeSeriesVars3D = (e3t, thetao, so)
ChunckJob3D = 100Y
Seasonal=ON
#
[Post_1M_grid_U]
Patches = ()
GatherWithInternal = (nav_lon, nav_lat, depthu, time_counter, time_centered, time_centered_bounds)
TimeSeriesVars2D = (tauuo, sozohetr, sozosatr)
ChunckJob2D = NONE
TimeSeriesVars3D = (e3u, uo)
ChunckJob3D = 100Y
Seasonal=ON

[Post_1M_grid_V]
Patches = ()
GatherWithInternal = (nav_lon, nav_lat, depthv, time_counter, time_centered, time_centered_bounds)
TimeSeriesVars2D = (tauvo, somehetr, somesatr)
ChunckJob2D = NONE
TimeSeriesVars3D = (e3v, vo)
ChunckJob3D = 100Y
Seasonal=ON

[Post_1M_grid_W]
Patches = ()
GatherWithInternal = (nav_lon, nav_lat, depthw, time_counter, time_centered, time_centered_bounds)
TimeSeriesVars2D = ( )
ChunckJob2D = NONE
TimeSeriesVars3D = ( )
ChunckJob3D = 100Y
Seasonal=ON

[Post_1M_diaptr]
Patches = ()
GatherWithInternal = (nav_lat, deptht, depthw, time_counter, time_centered, time_centered_bounds)
TimeSeriesVars2D = (zomsfglo, zomsfatl, zomsfpac, zomsfind, zomsfipc, zotemglo, zotematl, zotempac, zotemind, zotemipc, zosalglo, zosalatl, zosalpac, zosalind, zosalipc, zosrfglo, zosrfatl, zosrfpac, zosrfind, zosrfipc, sophtadv, sophtldf, sopstadv, sopstldf)
ChunckJob2D = NONE
TimeSeriesVars3D = ()

# Daily analysis

[Post_1D_grid_T]
Patches = ()
GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds)
TimeSeriesVars2D = (tos, tosstd, sos, zos, zosstd, sstdcy, mldr10_1, mldr10_1dcy, mldkz5)
ChunckJob2D = OFF
TimeSeriesVars3D = ()
ChunckJob3D = OFF
Seasonal=OFF

[Post_1D_grid_U]
Patches = ()
GatherWithInternal = (nav_lon, nav_lat, depthu, time_counter, time_centered, time_centered_bounds)
TimeSeriesVars2D = ()
ChunckJob2D = 100Y
TimeSeriesVars3D = ()
ChunckJob3D = OFF
Seasonal=OFF

[Post_1D_grid_V]
Patches = ()
GatherWithInternal = (nav_lon, nav_lat, depthv, time_counter, time_centered, time_centered_bounds)
TimeSeriesVars2D = ()
ChunckJob2D = 200Y
TimeSeriesVars3D = ()
ChunckJob3D = OFF
Seasonal=OFF

# Yearly analysis

[Post_1Y_scalar]
Patches = ()
GatherWithInternal = (time_counter, time_centered, time_centered_bounds)
TimeSeriesVars2D = (masso, volo, zosga, zossga, zostoga, thetaoga, soga)
ChunckJob2D = NONE
TimeSeriesVars3D = ()
ChunckJob3D = NONE
Seasonal=OFF

[Post_1Y_grid_T]
Patches = ()
GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds)
TimeSeriesVars2D = ( )
ChunckJob2D = NONE
TimeSeriesVars3D = (thetao, so)
ChunckJob3D = 50Y
Seasonal=OFF

[Post_1Y_grid_U]
Patches = ()
GatherWithInternal = (nav_lon, nav_lat, depthu, time_counter, time_centered, time_centered_bounds)
TimeSeriesVars2D = (hfx, hfxba, hfxdiff, sozotaux)
ChunckJob2D = NONE
TimeSeriesVars3D = (umo, vozocrtx,vozoeivu)
ChunckJob3D = 50Y
Seasonal=OFF

[Post_1Y_grid_V]
Patches = ()
GatherWithInternal = (nav_lon, nav_lat, depthv, time_counter, time_centered, time_centered_bounds)
TimeSeriesVars2D = ( )
ChunckJob2D = NONE
TimeSeriesVars3D = ( )
ChunckJob3D = 50Y
Seasonal=OFF

[Post_1Y_grid_W]
Patches = ()
GatherWithInternal = (nav_lon, nav_lat, depthw, time_counter, time_centered, time_centered_bounds)
TimeSeriesVars2D = ( )
ChunckJob2D = NONE
TimeSeriesVars3D = ( )
ChunckJob3D = 50Y
Seasonal=OFF

[Post_1Y_diaptr]
Patches = ()
GatherWithInternal = (nav_lat, deptht, depthw, time_counter, time_centered, time_centered_bounds)
TimeSeriesVars2D = (zomsfglo, zomsfatl, zotemglo, zotematl, zotempac, zosalglo, zosalatl, zosalpac, zosrfglo, zosrfatl, zosrfpac)
ChunckJob2D = NONE
TimeSeriesVars3D = ()
ChunckJob3D = NONE