slurmstepd-irene1510: error: task/cgroup: task[0] unable to set taskset '0x0'
+ SCRIPT_PID=78506
+ set +x
+ /bin/ksh -x /tmp/jobstart.78483
+ BATCH_NUM_PROC_TOT=580
Mon Oct  7 14:31:32 CEST 2019

#######################################
#       ANOTHER GREAT SIMULATION      #
#######################################


====================================================
Where do we run ? irene1510
Linux irene1510 3.10.0-957.12.2.el7.x86_64 #1 SMP Fri Apr 19 21:09:07 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
====================================================

Source machine dependent settings for irene Intel X-64 at TGCC
2019-10-07 14:31:32 --Debug1--> Module will be loaded once we know the compiler version
2019-10-07 14:31:32 --Debug1--> List of loaded modules:
Currently Loaded Modulefiles:
 1) ccc/1.0(default)                             25) nco/4.6.0(default)     
 2) datadir/gencmip6                             26) cdo/1.7.2rc6(default)  
 3) dfldatadir/gencmip6                          
 4) flavor/buildcompiler/intel/17(default)       
 5) feature/mkl/lp64                             
 6) feature/mkl/sequential                       
 7) mkl/17.0.6.256(default)                      
 8) licsrv/intel                                 
 9) c/intel/17.0.6.256(default)                  
10) c++/intel/17.0.6.256(default)                
11) fortran/intel/17.0.6.256(default)            
12) intel/17.0.6.256(default)                    
13) flavor/buildmpi/openmpi/2.0                  
14) feature/openmpi/mpi_compiler/intel(default)  
15) flavor/openmpi/standard(default)             
16) hwloc/1.11.3(default)                        
17) feature/openmpi/net/auto(default)            
18) .tuning/openmpi/2.0.4                        
19) mpi/openmpi/2.0.4(default)                   
20) flavor/hdf5/parallel                         
21) netcdf-c/4.6.0(default)                      
22) netcdf-fortran/4.4.4(default)                
23) hdf5/1.8.20(default)                         
24) feature/bridge/heterogenous_mpmd             
Check libIGCM_debug ..............................................[ OK ]
Check libIGCM_card ...............................................[ OK ]
Check libIGCM_date ...............................................[ OK ]

2019-10-07 14:31:37 --Debug1--> IGCM_config_CommonConfiguration
2019-10-07 14:31:37 --Debug1--> /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/config.card

2019-10-07 14:31:37 --Debug1--> DefineArrayFromOption : config_UserChoices
2019-10-07 14:31:37 --------------Debug3--> JobName : CM6-pdSST-futAntSIC-002
2019-10-07 14:31:37 --------------Debug3--> ExperimentName : pdSST-futAntSIC
2019-10-07 14:31:37 --------------Debug3--> SpaceName : PROD
2019-10-07 14:31:37 --------------Debug3--> TagName : LMDZOR
2019-10-07 14:31:37 --------------Debug3--> LongName : IPSLCM6.1.9-LR
2019-10-07 14:31:37 --------------Debug3--> ModelName : IPSL-CM6A-LR
2019-10-07 14:31:37 --------------Debug3--> Member : r2i1p1f1
2019-10-07 14:31:37 --------------Debug3--> ExpType : LMDZOR/amip_CMIP6
2019-10-07 14:31:37 --------------Debug3--> DataProject : gencmip6
2019-10-07 14:31:37 --------------Debug3--> CalendarType : leap
2019-10-07 14:31:37 --------------Debug3--> DateBegin : 2000-04-01
2019-10-07 14:31:37 --------------Debug3--> DateEnd : 2001-05-31
2019-10-07 14:31:37 --------------Debug3--> PeriodLength : 9M

2019-10-07 14:31:37 --Debug1--> DefineArrayFromOption : config_Ensemble

2019-10-07 14:31:37 --Debug1--> Warning with readding of config_Ensemble variable in /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/config.card.
2019-10-07 14:31:37 --Debug1--> Warning: Section Ensemble not found

2019-10-07 14:31:37 --Debug1--> DefineArrayFromOption : config_Post
2019-10-07 14:31:37 --------------Debug3--> RebuildFrequency : NONE
2019-10-07 14:31:37 --------------Debug3--> PackFrequency : 18M
2019-10-07 14:31:37 --------------Debug3--> TimeSeriesFrequency : NONE
2019-10-07 14:31:37 --------------Debug3--> SeasonalFrequency : NONE
2019-10-07 14:31:37 --------------Debug3--> SeasonalFrequencyOffset : 0
2019-10-07 14:31:37 --------------Debug3--> MetricsPCMDI : FALSE

unload module dfldatadir/gencmip6 (Data Directory)
unload module datadir/gencmip6 (Data Directory)
load module datadir/gencmip6 (Data Directory)
load module dfldatadir/gencmip6 (Data Directory)
2019-10-07 14:31:38 --Debug1--> Load dfldatadir for DataProject red in config.card : gencmip6
2019-10-07 14:31:38 --Debug1--> R_OUT has been defined = /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT
2019-10-07 14:31:38 --Debug1--> R_BUF has been defined = /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT
2019-10-07 14:31:38 --Debug1--> R_FIG has been defined = /ccc/work/cont003/gencmip6/p86ggas/IGCM_OUT
IGCM_sys_MkdirWork : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/REBUILD
2019-10-07 14:31:38 --------Debug2--> run.card exists
IGCM_sys_getJobSchedulerID
IGCM_sys_check_quota
2019-10-07 14:31:39 --------Debug2--> IGCM_debug_sendAMQP_projectAccounting

2019-10-07 14:31:39 --Debug1--> IGCM_config_Initialize
IGCM_sys_TestDir : /ccc/cont003/dsku/perle2/home/app/gencmip6/p86ggas/PAMIP/26042019/modipsl
IGCM_sys_TestDir : /ccc/cont003/dsku/perle2/home/app/gencmip6/p86ggas/PAMIP/26042019/modipsl/libIGCM
IGCM_sys_TestDir : /ccc/cont003/dsku/perle2/home/app/gencmip6/p86ggas/PAMIP/26042019/modipsl/bin
send-mail: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol
IGCM_sys_TestDir : /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002
postdrop: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol
Keep trace of inital SUBMIT_DIR : 
total 420
-rw-r--r--.  1 p86ggas gencmip6   5926 Oct  7 14:31 Script_Output_CM6-pdSST-futAntSIC-002.000002
drwxr-sr-x.  6 p86ggas gencmip6   4096 Oct  7 14:31 .
-rw-r--r--.  1 p86ggas gencmip6 229699 Oct  7 14:31 Script_Output_CM6-pdSST-futAntSIC-002.000003
-rw-r--r--.  1 p86ggas gencmip6   1935 Oct  7 14:31 run.card.bak
-rw-r--r--.  1 p86ggas gencmip6   1935 Oct  7 14:31 run.card
drwxr-sr-x. 52 p86ggas gencmip6   4096 Oct  7 13:29 ..
-rw-r--r--.  1 p86ggas gencmip6   5112 Oct  7 13:28 config.card
-rw-r--r--.  1 p86ggas gencmip6      6 Oct  7 13:28 tmpa
drwxr-sr-x.  2 p86ggas gencmip6   4096 Oct  7 13:28 COMP
-rw-r--r--.  1 p86ggas gencmip6  20446 Oct  7 13:28 Job_CM6-pdSST-futAntSIC-002
-rw-r--r--.  1 p86ggas gencmip6   1913 Oct  7 13:28 run.card-oold1
-rw-r--r--.  1 p86ggas gencmip6   5103 Oct  7 13:28 config.card_old
-rw-r--r--.  1 p86ggas gencmip6   5103 Oct  7 13:28 config.card-oold2
-rw-r--r--.  1 p86ggas gencmip6  20404 Oct  7 13:28 Job_CM619-pamip-STD_SAVED_36783
-rw-r--r--.  1 p86ggas gencmip6   1727 Oct  7 13:28 run.card-oold2
-rw-r--r--.  1 p86ggas gencmip6  20404 Oct  7 13:28 Job_CM619-pamip-STD_SAVED_149812
-rw-r--r--.  1 p86ggas gencmip6    321 Oct  7 13:28 readme
-rw-r--r--.  1 p86ggas gencmip6   6944 Oct  7 13:28 PACKOUTPUT.out_1913357
-rwxr--r--.  1 p86ggas gencmip6  11053 Oct  7 13:28 pack_output.job
-rw-r--r--.  1 p86ggas gencmip6    158 Oct  7 13:28 ferret.jnl
-rw-r--r--.  1 p86ggas gencmip6  20422 Oct  7 13:28 old_Job_CM619-pamip-STD
-rw-r--r--.  1 p86ggas gencmip6   1546 Oct  7 13:28 run.card.init
drwxr-sr-x.  2 p86ggas gencmip6   4096 Oct  7 13:28 POST
drwxr-sr-x.  2 p86ggas gencmip6   8192 Oct  7 13:28 PARAM
drwxr-sr-x.  2 p86ggas gencmip6   4096 Oct  7 13:28 DRIVER

2019-10-07 14:31:39 --Debug1--> DefineArrayFromSection : ListOfComponents
2019-10-07 14:31:39 --------------Debug3--> ATM
2019-10-07 14:31:39 --------------Debug3--> SRF
2019-10-07 14:31:39 --------------Debug3--> SBG
2019-10-07 14:31:39 --------------Debug3--> IOS

2019-10-07 14:31:39 --Debug1--> DefineArrayFromOption : config_Restarts
2019-10-07 14:31:39 --------------Debug3--> OverRule : y
2019-10-07 14:31:39 --------------Debug3--> RestartDate : 2000-03-31
2019-10-07 14:31:39 --------------Debug3--> RestartJobName : CM6-amip-redo-002
2019-10-07 14:31:39 --------------Debug3--> RestartPath : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/amip

2019-10-07 14:31:39 --------Debug2--> Define Script_Output_Prefix and Exe_Output
2019-10-07 14:31:39 --------------Debug3--> Script_Output_Prefix = Script_Output
2019-10-07 14:31:39 --------------Debug3--> Exe_Output = out_execution

2019-10-07 14:31:39 --------Debug2--> (Re)Define R_INIT, R_BC and PeriodNb
2019-10-07 14:31:39 --------------Debug3--> R_IN=/ccc/work/cont003/igcmg/igcmg/IGCM
2019-10-07 14:31:39 --------------Debug3--> R_INIT=/ccc/work/cont003/igcmg/igcmg/IGCM/INIT
2019-10-07 14:31:39 --------------Debug3--> R_BC=/ccc/work/cont003/igcmg/igcmg/IGCM/BC
2019-10-07 14:31:39 --------------Debug3--> Loop in main Job with 1 period(s)
IGCM_sys_TestDirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002
IGCM_sys_TestDir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002
IGCM_sys_MkdirWork : /ccc/scratch/cont003/gencmip6/p86ggas/RUN_DIR/2669745_78506/CM6-pdSST-futAntSIC-002.78506
IGCM_sys_Cd : /ccc/scratch/cont003/gencmip6/p86ggas/RUN_DIR/2669745_78506/CM6-pdSST-futAntSIC-002.78506

2019-10-07 14:31:39 --Debug1--> IGCM_comp_Initialize

2019-10-07 14:31:39 --Debug1--> Initialize ATM : lmdz component.
2019-10-07 14:31:39 --------------Debug3--> DefineArrayFromSection : ATM
2019-10-07 14:31:40 --------------Debug3--> Found in section config_ATM : WriteFrequency Restart RestartDate RestartJobName RestartPath
2019-10-07 14:31:40 --Debug1--> Write frequency for lmdz : 1M
2019-10-07 14:31:40 --------Debug2--> Initialize following component library
2019-10-07 14:31:40 --------Debug2--> /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/DRIVER/lmdz.driver
2019-10-07 14:31:40 --------------Debug3--> With tag : LMDZ
2019-10-07 14:31:40 --------------Debug3--> Initialize ATM output directory.
IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM
IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM/Output
IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM/Analyse
IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM
IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM/Output
IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM/Analyse
IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM/Restart
IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM/Debug
2019-10-07 14:31:40 --------Debug2--> DefineArrayFromSection : lmdz_UserChoices /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/lmdz.card
2019-10-07 14:31:40 --------------Debug3--> lmdz_UserChoices_values:
2019-10-07 14:31:40 --------------Debug3--> LMDZ_Physics=NPv6.1.3
2019-10-07 14:31:40 --------------Debug3--> ConfType=annuel
2019-10-07 14:31:40 --------------Debug3--> flag_aerosol=6
2019-10-07 14:31:40 --------------Debug3--> ok_ade=y
2019-10-07 14:31:40 --------------Debug3--> ok_aie=y
2019-10-07 14:31:40 --------------Debug3--> aerosol_couple=n
2019-10-07 14:31:40 --------------Debug3--> read_climoz=1
2019-10-07 14:31:40 --------------Debug3--> ok_cdnc=y
2019-10-07 14:31:40 --------------Debug3--> tau_gl=2.
2019-10-07 14:31:40 --------------Debug3--> ByPass_hgardfou_teta=n
2019-10-07 14:31:40 --------------Debug3--> ByPass_hgardfou_mats=n
2019-10-07 14:31:40 --------------Debug3--> OutLevel=low
2019-10-07 14:31:40 --------------Debug3--> LMDZ_COSP_OK=y
2019-10-07 14:31:40 --------------Debug3--> LMDZ_COSP_monthly=n
2019-10-07 14:31:40 --------------Debug3--> LMDZ_COSP_daily=n
2019-10-07 14:31:40 --------------Debug3--> LMDZ_COSP_hf=n
2019-10-07 14:31:40 --------------Debug3--> LMDZ_NMC_monthly=n
2019-10-07 14:31:40 --------------Debug3--> LMDZ_NMC_daily=n
2019-10-07 14:31:40 --------------Debug3--> LMDZ_NMC_hf=n
2019-10-07 14:31:40 --------------Debug3--> ok_guide=n
2019-10-07 14:31:40 --------Debug2--> DefineArrayFromOption : lmdz_OutputFiles /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/lmdz.card
2019-10-07 14:31:40 --------------Debug3--> 2D time series activated for Post_1M_histmth
2019-10-07 14:31:41 --------------Debug3--> 3D time series activated with chunck for Post_1M_histmth
2019-10-07 14:31:41 --------------Debug3--> Initialize lmdz with driver.
LMDZ physics version : NPv6.1.3

2019-10-07 14:31:41 --Debug1--> Initialize SRF : orchidee component.
2019-10-07 14:31:41 --------------Debug3--> DefineArrayFromSection : SRF
2019-10-07 14:31:41 --------------Debug3--> Found in section config_SRF : WriteFrequency Restart RestartDate RestartJobName RestartPath
2019-10-07 14:31:41 --Debug1--> Write frequency for orchidee :
2019-10-07 14:31:41 --------Debug2--> Initialize following component library
2019-10-07 14:31:41 --------Debug2--> /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/DRIVER/orchidee.driver
2019-10-07 14:31:41 --------------Debug3--> With tag : ORCHIDEE
2019-10-07 14:31:41 --------------Debug3--> Initialize SRF output directory.
IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF
IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF/Output
IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF/Analyse
IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF
IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF/Output
IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF/Analyse
IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF/Restart
IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF/Debug
2019-10-07 14:31:41 --------Debug2--> DefineArrayFromSection : orchidee_UserChoices /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/orchidee.card
2019-10-07 14:31:41 --------------Debug3--> orchidee_UserChoices_values:
2019-10-07 14:31:41 --------------Debug3--> DefSuffix=CWRR
2019-10-07 14:31:41 --------------Debug3--> VEGET_UPDATE=1Y
2019-10-07 14:31:41 --------------Debug3--> output_level_sechiba_history=0
2019-10-07 14:31:41 --------------Debug3--> output_level_sechiba_out_2=NONE
2019-10-07 14:31:41 --------------Debug3--> output_level_sechiba_history_4dim=NONE
2019-10-07 14:31:41 --------------Debug3--> output_freq_sechiba_history=1mo
2019-10-07 14:31:41 --------------Debug3--> output_freq_sechiba_out_2=10800s
2019-10-07 14:31:41 --------------Debug3--> output_freq_sechiba_history_4dim=1mo
2019-10-07 14:31:41 --------Debug2--> DefineArrayFromOption : orchidee_OutputFiles /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/orchidee.card
2019-10-07 14:31:41 --------------Debug3--> 2D time series activated for Post_1M_sechiba_history
2019-10-07 14:31:41 --------------Debug3--> 3D time series activated for Post_1M_sechiba_history
2019-10-07 14:31:41 --------------Debug3--> Initialize orchidee with driver.

2019-10-07 14:31:41 --Debug1--> Initialize SBG : stomate component.
2019-10-07 14:31:41 --------------Debug3--> DefineArrayFromSection : SBG
2019-10-07 14:31:42 --------------Debug3--> Found in section config_SBG : WriteFrequency Restart RestartDate RestartJobName RestartPath
2019-10-07 14:31:42 --Debug1--> Write frequency for stomate :
2019-10-07 14:31:42 --------Debug2--> Initialize following component library
2019-10-07 14:31:42 --------Debug2--> /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/DRIVER/stomate.driver
2019-10-07 14:31:42 --------------Debug3--> With tag : ORCHIDEE
2019-10-07 14:31:42 --------------Debug3--> Initialize SBG output directory.
IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG
IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG/Output
IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG/Analyse
IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG
IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG/Output
IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG/Analyse
IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG/Restart
IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG/Debug
2019-10-07 14:31:42 --------Debug2--> DefineArrayFromSection : stomate_UserChoices /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/stomate.card
2019-10-07 14:31:42 --------------Debug3--> stomate_UserChoices_values:
2019-10-07 14:31:42 --------------Debug3--> output_level_stomate_history=10
2019-10-07 14:31:42 --------------Debug3--> output_level_stomate_ipcc_history=1
2019-10-07 14:31:42 --------------Debug3--> output_freq_stomate_history=1mo
2019-10-07 14:31:42 --------------Debug3--> output_freq_stomate_ipcc_history=1mo
2019-10-07 14:31:42 --------Debug2--> DefineArrayFromOption : stomate_OutputFiles /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/stomate.card
2019-10-07 14:31:42 --------------Debug3--> 2D time series activated for Post_1M_stomate_history
2019-10-07 14:31:42 --------------Debug3--> 3D time series activated for Post_1M_stomate_history
2019-10-07 14:31:42 --------------Debug3--> 2D time series activated for Post_1M_stomate_ipcc_history
2019-10-07 14:31:42 --------------Debug3--> Initialize stomate with driver.

2019-10-07 14:31:42 --Debug1--> Initialize IOS : xios component.
2019-10-07 14:31:42 --------------Debug3--> DefineArrayFromSection : IOS
2019-10-07 14:31:43 --------------Debug3--> Found in section config_IOS : WriteFrequency Restart RestartDate RestartJobName RestartPath
2019-10-07 14:31:43 --Debug1--> Write frequency for xios :
2019-10-07 14:31:43 --------Debug2--> Initialize following component library
2019-10-07 14:31:43 --------Debug2--> /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/DRIVER/xios.driver
2019-10-07 14:31:43 --------------Debug3--> With tag : XIOS
2019-10-07 14:31:43 --------------Debug3--> Initialize IOS output directory.
IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS
IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS/Output
IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS/Analyse
IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS
IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS/Output
IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS/Analyse
IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS/Restart
IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS/Debug
2019-10-07 14:31:43 --------Debug2--> DefineArrayFromSection : xios_UserChoices /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/xios.card
2019-10-07 14:31:43 --------Debug2--> DefineArrayFromOption : xios_OutputFiles /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/xios.card
2019-10-07 14:31:43 --------------Debug3--> Initialize xios with driver.
INITIALIZE IOS !!!


2019-10-07 14:31:43 --Debug1--> IGCM_config_Check

2019-10-07 14:31:43 --Debug1--> Asynchronous rebuild has not been activated
2019-10-07 14:31:43 --Debug1--> Proceed with standard post-treatment pathway

2019-10-07 14:31:43 --Debug1--> Check coherence between TimeSeriesFrequency and PeriodLength
2019-10-07 14:31:43 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=NONE Slave=9M
2019-10-07 14:31:43 --Debug1--> Check coherence between SeasonalFrequency and PeriodLength
2019-10-07 14:31:43 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=NONE Slave=9M
2019-10-07 14:31:43 --Debug1--> Check coherence between PackFrequency and PeriodLength
2019-10-07 14:31:43 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=18M Slave=9M
2019-10-07 14:31:43 --Debug1--> Check coherence between TimeSeriesFrequency and PackFrequency
2019-10-07 14:31:43 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=NONE Slave=18M
2019-10-07 14:31:43 --Debug1--> Check coherence between SeasonalFrequency and PackFrequency
2019-10-07 14:31:43 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=NONE Slave=18M
2019-10-07 14:31:43 --Debug1--> Check coherence between Post_1M_histmth Chunck3D frequency and TimeSeriesFrequency
2019-10-07 14:31:43 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=100Y Slave=NONE

2019-10-07 14:31:43 --Debug1--> Check if there is enough space on temporary filesystem
IGCM_sys_check_quota

2019-10-07 14:31:46 --Debug1--> Check where RUN_DIR_PATH variable is pointing to
IGCM_sys_check_path

Starting iteration 1 / 1

2019-10-07 14:31:46 --Debug1--> IGCM_config_PeriodStart

IGCM_sys_Cd : /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002
2019-10-07 14:31:46 --------Debug2--> Save previous ksh job output
IGCM_sys_Cp : Script_Output_CM6-pdSST-futAntSIC-002.000002 /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/Out/Script_Output_CM6-pdSST-futAntSIC-002.000002.78506
IGCM_sys_Cp : Script_Output_CM6-pdSST-futAntSIC-002.000003 /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/Out/Script_Output_CM6-pdSST-futAntSIC-002.000003.78506
2019-10-07 14:31:47 --------Debug2--> Save current run.card
IGCM_sys_Cp : /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/run.card /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/Out/run.card
IGCM_sys_Cd : /ccc/scratch/cont003/gencmip6/p86ggas/RUN_DIR/2669745_78506/CM6-pdSST-futAntSIC-002.78506

2019-10-07 14:31:47 --------Debug2--> Number of months for PeriodLength : 9

2019-10-07 14:31:47 --Debug1--> IGCM_config_DateCoherency


2019-10-07 14:31:47 --Debug1--> CyclicYear wont be use without adding CyclicBegin and CyclicEnd in config.card

2019-10-07 14:31:48 --Debug1--> IGCM_config_PeriodStart : Before Execution
2019-10-07 14:31:48 --Debug1--> Year of simulation : 2001
2019-10-07 14:31:48 --Debug1--> Month of simulation : 01
2019-10-07 14:31:48 --Debug1--> PeriodLengthInDays : 273
2019-10-07 14:31:48 --Debug1--> PeriodDateBegin : 20010101
2019-10-07 14:31:48 --Debug1--> PeriodDateEnd : 20010930
2019-10-07 14:31:48 --Debug1--> SimulationLengthInDays : 548
2019-10-07 14:31:48 --Debug1--> ExperienceLengthInDays : 426
2019-10-07 14:31:48 --Debug1--> IGCM_config_ConfigureExecution
2019-10-07 14:31:48 --Debug1--> ATM
2019-10-07 14:31:48 --------Debug2--> 71MPI
2019-10-07 14:31:48 --------Debug2--> 8OMP
2019-10-07 14:31:48 --Debug1--> IOS
2019-10-07 14:31:48 --------Debug2--> 12MPI
2019-10-07 14:31:48 --Debug1--> MPI/OMP treatment coreNumber = 580
2019-10-07 14:31:48 --Debug1--> MPI/OMP treatment mpiTasks = 83
2019-10-07 14:31:48 --Debug1--> MPI/OMP treatment openMPthreads = 8
2019-10-07 14:31:48 --Debug1--> MPI/OMP treatment executionType = 2
IGCM_sys_build_execution_scripts 
2019-10-07 14:31:48 --Debug1--> You run lmdz.x on 8 OMP threads
IGCM_sys_Chmod : u+x script_lmdz.x.ksh
IGCM_sys_Chmod : u+x script_xios.x.ksh
IGCM_sys_Chmod : u+x run_file
run_file contains : 
71-8 env OMP_NUM_THREADS=8 ./script_lmdz.x.ksh 
12-1 env OMP_NUM_THREADS=1 ./script_xios.x.ksh 
2019-10-07 14:31:48 --Debug1--> sys Irene : execution command is
2019-10-07 14:31:48 --Debug1--> /usr/bin/time ccc_mprun -E-K1 -f ./run_file
2019-10-07 14:31:48 --Debug1--> break because '${SimulationLengthInDays} -gt ${ExperienceLengthInDays}' : 548 -gt 426

2019-10-07 14:31:48 --Debug1--> IGCM_config_Finalize

IGCM_sys_SendMail :
send-mail: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol
postdrop: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol
2019-10-07 14:31:58 --Debug1--> Normal End of computation.
IGCM_sys_Cd : ..
IGCM_sys_RmRunDir : -rf /ccc/scratch/cont003/gencmip6/p86ggas/RUN_DIR/2669745_78506
send-mail: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol
postdrop: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol
Mon Oct  7 14:31:58 CEST 2019
########## ########## ########## ########## ########## ########## ########## ##########
Execution Sum Up
########## ########## ########## ########## ########## ########## ########## ##########
Jobid     : 2669745
Jobname   : CM6-pdSST-futAntSIC-002
User      : p86ggas
Account   : gen7403@skylake
Limits    : time = 2:14:00 , memory/task = 3750 Mo
Date      : submit = 07/10/2019 14:31:29 , start = 07/10/2019 14:31:31 , end = 07/10/2019 16:45:31
Execution : partition = skylake , QoS = normal , Comment = (null)
Resources : ntasks = 624 , cpus/task = 1 , ncpus = 624 , nodes = 13
   Nodes=irene[1510-1522] CPU_IDs=0-47 Mem=180000 GRES_IDX=
 
Memory / step 
--------------
                          Resident Size (Mo)                     Virtual Size (Go)
JobID            Max     (Node:Task)       AveTask    Max  (Node:Task)            AveTask
-----------      ------------------------  -------    --------------------------  -------

Accounting / step 
------------------

JobID           JobName                  Ntasks  Ncpus Nnodes  Layout       Elapsed               User         System     Eff  State
------------    ------------             ------  ----- ------  -------      -------               -------      ------     ---  -----
2669745         CM6-pdSST-futAntSIC-002       -    624     13        -     00:00:29   (100%)            -            -      -  -
########## ########## ########## ########## ########## ########## ########## ##########