[Compatibility] libIGCM=1.0 [UserChoices] #============================================================== #-- Name of directory for COMMON ACCOUNT at idris or CCRT #-- available directories are: v3, v3_1, v3_2 #-- related to NEMO_tag_revision (nemo_v3, nemo_v3_1, nemo_v3_2_beta) #-- NOTE: if you use COMMON ACCOUNT you have to de-comment it OPA_version=v3.6_stable mesh_mask=n OutputLevel=10 #================================================================================================== #-- Surface Boundary Condition. For interannual run, needs 3 consecutives years for each forcing file #-- Structure : to simulate year 2000, needs u_10_y1999.nc, u_10_y2000.nc & u_10_y2001.nc #================================================================================================== forcing=jra R_FORCING=${R_IN}/OCE/NEMO/FORCINGS/MRI-JRA55-do-1-4-0 ListForcing=(u_10 v_10 t_10 q_10 rsds rlds precip snow) YearForcingInit=1958 YearForcingEnd=2016 [InitialStateFiles] List= (${SUBMIT_DIR}/PARAM/NAMELIST/EMPave_old.dat, EMPave_old.dat) [BoundaryFiles] List= (${opa9_UserChoices_R_FORCING}/weights_JRA55_ORCA2_bilinear.nc, weights_bilinear.nc), \ (${opa9_UserChoices_R_FORCING}/weights_JRA55_ORCA2_bicubic.nc , weights_bicubic.nc) ListNonDel= (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/ahmcoef.nc, .), \ (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/bathy_level.nc, .), \ (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/bathy_meter.nc, .), \ (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/coordinates.nc, .), \ (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/potT_PHC3WOA_ORCA2_IOVI.nc, data_1m_potential_temperature_nomask.nc), \ (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Salt_corr_PHC3WOA09.nc, data_1m_salinity_nomask.nc), \ (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/geothermal_heating.nc, .),\ (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/runoff_core_monthly.nc, .),\ (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/sss_corr_PHC3WOA09.nc, sss_data.nc),\ (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/sst_PHC3WOA_ORCA2_IOVI.nc, sst_data.nc),\ (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/sali_ref_clim_monthly.nc, .),\ (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/chlorophyll.nc, .),\ (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/mixing_power_bot.nc, .),\ (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/mixing_power_pyc.nc, .),\ (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/mixing_power_cri.nc, .),\ (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/decay_scale_bot.nc, .),\ (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/decay_scale_cri.nc, .),\ (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/K1rowdrg.nc, .),\ (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/M2rowdrg.nc, .),\ (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/mask_itf.nc, .),\ (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/resto.nc, .) [ParametersFiles] List= (${MODIPSL}/modeles/NEMOGCM/CONFIG/SHARED/namelist_ref , namelist_ref ), \ (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA1_LIM3_PISCES/EXP00/context_nemo.xml , context_nemo.xml ), \ (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA1_LIM3_PISCES/EXP00/domain_def_nemo.xml , domain_def_nemo.xml ), \ (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA1_LIM3_PISCES/EXP00/axis_def_nemo.xml , axis_def_nemo.xml ), \ (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA1_LIM3_PISCES/EXP00/grids_def_nemo.xml , grids_def_nemo.xml ), \ (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA1_LIM3_PISCES/EXP00/field_def_nemo-opa.xml , field_def_nemo-opa.xml ), \ (${SUBMIT_DIR}/PARAM/NAMELIST/${RESOL_OCE}/namelist_${opa9_UserChoices_forcing}_${exptype}_cfg, namelist_cfg), \ (${SUBMIT_DIR}/PARAM/XML/iodef.xml , iodef.xml ), \ (${SUBMIT_DIR}/PARAM/XML/file_def_nemo-opa.xml , file_def_nemo-opa.xml ) [RestartFiles] List= (${config_UserChoices_JobName}_${NEMO_END}_restart.nc, restart.nc, restart.nc), \ (EMPave.dat, EMPave.dat, EMPave_old.dat) [OutputText] List= (ocean.output, solver.stat, STRAIT.dat, namelist_ref, namelist_cfg ) [OutputFiles] List= (${config_UserChoices_JobName}_1y_scalar.nc , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_scalar.nc , NONE ),\ (${config_UserChoices_JobName}_1y_grid_T.nc , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_T.nc , NONE ),\ (${config_UserChoices_JobName}_1y_grid_U.nc , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_U.nc , NONE ),\ (${config_UserChoices_JobName}_1y_grid_V.nc , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_V.nc , NONE ),\ (${config_UserChoices_JobName}_1y_grid_W.nc , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_grid_W.nc , NONE ),\ (${config_UserChoices_JobName}_1y_diaptr_T.nc , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_diaptr_T.nc , NONE ),\ (${config_UserChoices_JobName}_1y_diaptr_W.nc , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_diaptr_W.nc , NONE ),\ (${config_UserChoices_JobName}_1y_trdtra.nc , ${R_OUT_OCE_O_Y}/${PREFIX}_1Y_trdtra.nc , NONE ),\ (${config_UserChoices_JobName}_1m_scalar.nc , ${R_OUT_OCE_O_M}/${PREFIX}_1M_scalar.nc , Post_1M_scalar),\ (${config_UserChoices_JobName}_1m_grid_T.nc , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_T.nc , Post_1M_grid_T),\ (${config_UserChoices_JobName}_1m_grid_U.nc , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_U.nc , Post_1M_grid_U),\ (${config_UserChoices_JobName}_1m_grid_V.nc , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_V.nc , Post_1M_grid_V),\ (${config_UserChoices_JobName}_1m_grid_W.nc , ${R_OUT_OCE_O_M}/${PREFIX}_1M_grid_W.nc , Post_1M_grid_W),\ (${config_UserChoices_JobName}_1m_diaptr_T.nc , ${R_OUT_OCE_O_M}/${PREFIX}_1M_diaptr_T.nc , Post_1M_diaptr_T),\ (${config_UserChoices_JobName}_1m_diaptr_W.nc , ${R_OUT_OCE_O_M}/${PREFIX}_1M_diaptr_W.nc , Post_1M_diaptr_W),\ (${config_UserChoices_JobName}_1m_trdtra.nc , ${R_OUT_OCE_O_M}/${PREFIX}_1M_trdtra.nc , NONE ),\ (${config_UserChoices_JobName}_5d_grid_T.nc , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_T.nc , NONE ),\ (${config_UserChoices_JobName}_5d_grid_U.nc , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_U.nc , NONE ),\ (${config_UserChoices_JobName}_5d_grid_V.nc , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_V.nc , NONE ),\ (${config_UserChoices_JobName}_5d_grid_W.nc , ${R_OUT_OCE_O_D}/${PREFIX}_5D_grid_W.nc , NONE ),\ (${config_UserChoices_JobName}_5d_trdtra.nc , ${R_OUT_OCE_O_D}/${PREFIX}_5D_trdtra.nc , NONE ),\ (${config_UserChoices_JobName}_1d_grid_T.nc , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_T.nc , NONE ),\ (${config_UserChoices_JobName}_1d_grid_U.nc , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_U.nc , NONE ),\ (${config_UserChoices_JobName}_1d_grid_W.nc , ${R_OUT_OCE_O_D}/${PREFIX}_1D_grid_W.nc , NONE ),\ (${config_UserChoices_JobName}_1d_SBC.nc , ${R_OUT_OCE_O_D}/${PREFIX}_1D_SBC.nc , NONE ),\ (${config_UserChoices_JobName}_1d_diaptr_T.nc , ${R_OUT_OCE_O_D}/${PREFIX}_1D_diaptr_T.nc , NONE ),\ (${config_UserChoices_JobName}_1d_diaptr_W.nc , ${R_OUT_OCE_O_D}/${PREFIX}_1D_diaptr_W.nc , NONE ),\ (${config_UserChoices_JobName}_1d_scalar.nc , ${R_OUT_OCE_O_D}/${PREFIX}_1D_scalar.nc , NONE ),\ (mesh_mask.nc , ${R_OUT_OCE_O}/${config_UserChoices_JobName}_mesh_mask.nc , NONE ),\ (runoffs.nc , ${R_OUT_OCE_O}/${config_UserChoices_JobName}_runoffs.nc , NONE ),\ (damping.coeff.nc , ${R_OUT_OCE_O_D}/${PREFIX}_damping.coeff.nc , NONE ),\ (output.abort.nc , ${R_OUT_OCE_D}/${PREFIX}_output.abort.nc , NONE ),\ (output.init.nc , ${R_OUT_OCE_O_I}/${config_UserChoices_JobName}_${PeriodDateBegin}_output.init.nc,NONE ) # Monthly analysis [Post_1M_scalar] Patches = () GatherWithInternal = (time_counter, time_centered, time_centered_bounds) TimeSeriesVars2D = (scmastot, scvoltot, scsshtot, scsshste, scsshtst, sctemtot, scsaltot, ibgheat_tot, sbgheat_tot) ChunckJob2D = NONE TimeSeriesVars3D = () ChunckJob3D = NONE Seasonal=OFF [Post_1M_grid_T] Patches = () GatherWithInternal = (nav_lon, nav_lat, olevel, time_counter, time_centered, time_centered_bounds) TimeSeriesVars2D = (zos, zossq, tos, sos, tossq, omlmax, mldkz5, mldr10_1, nshfls, rsntds, rsds, friver, hc300, wfo) ChunckJob2D = NONE TimeSeriesVars3D = (e3t, thetao, so) ChunckJob3D = 100Y Seasonal=ON [Post_1M_grid_U] Patches = () GatherWithInternal = (nav_lon, nav_lat, olevel, time_counter, time_centered, time_centered_bounds) TimeSeriesVars2D = (tauuo, sozohetr, sozosatr) ChunckJob2D = NONE TimeSeriesVars3D = (e3u, uo) ChunckJob3D = 100Y Seasonal=ON [Post_1M_grid_V] Patches = () GatherWithInternal = (nav_lon, nav_lat, olevel, time_counter, time_centered, time_centered_bounds) TimeSeriesVars2D = (tauvo, somehetr, somesatr) ChunckJob2D = NONE TimeSeriesVars3D = (e3v, vo) ChunckJob3D = 100Y Seasonal=ON [Post_1M_grid_W] Patches = () GatherWithInternal = (nav_lon, nav_lat, olevel, time_counter, time_centered, time_centered_bounds) TimeSeriesVars2D = ( ) ChunckJob2D = NONE TimeSeriesVars3D = ( ) ChunckJob3D = 100Y Seasonal=ON [Post_1M_diaptr_T] Patches = () GatherWithInternal = (nav_lat, olevel, time_counter, time_centered, time_centered_bounds) TimeSeriesVars2D = (zotemglo, zotematl, zotempac, zotemind, zotemipc, zosalglo, zosalatl, zosalpac, zosalind, zosalipc, zosrfglo, zosrfatl, zosrfpac, zosrfind, zosrfipc, sophtadv, sophtldf, sopstadv, sopstldf) ChunckJob2D = NONE TimeSeriesVars3D = () ChunckJob3D = NONE Seasonal=ON [Post_1M_diaptr_W] Patches = () GatherWithInternal = (nav_lat, olevel, time_counter, time_centered, time_centered_bounds) TimeSeriesVars2D = (zomsfglo, zomsfatl, zomsfpac, zomsfind, zomsfipc) ChunckJob2D = NONE TimeSeriesVars3D = () ChunckJob3D = NONE Seasonal=ON [Post_1M_trdtra] Patches = () GatherWithInternal = (nav_lon, nav_lat, olevel, time_counter, time_centered, time_centered_bounds) TimeSeriesVars2D = NONE ChunckJob2D = NONE TimeSeriesVars3D = (ttrdtr_zdfp, ttrdtr_eivad, ttrdtr_iso, ttrdtr_totad, ttrdtr_tot, strdtr_zdfp, strdtr_eivad, strdtr_iso, strdtr_totad, strdtr_tot) ChunckJob3D = 100Y Seasonal=ON # Daily analysis [Post_1D_grid_T] Patches = () GatherWithInternal = (nav_lon, nav_lat, olevel, time_counter, time_centered, time_centered_bounds) TimeSeriesVars2D = (tos, tosstd, sos, zos, zosstd, sstdcy, mldr10_1, mldr10_1dcy, mldkz5) ChunckJob2D = OFF TimeSeriesVars3D = () ChunckJob3D = OFF Seasonal=OFF [Post_1D_grid_U] Patches = () GatherWithInternal = (nav_lon, nav_lat, olevel, time_counter, time_centered, time_centered_bounds) TimeSeriesVars2D = () ChunckJob2D = 100Y TimeSeriesVars3D = () ChunckJob3D = OFF Seasonal=OFF [Post_1D_grid_V] Patches = () GatherWithInternal = (nav_lon, nav_lat, olevel, time_counter, time_centered, time_centered_bounds) TimeSeriesVars2D = () ChunckJob2D = 200Y TimeSeriesVars3D = () ChunckJob3D = OFF Seasonal=OFF ## Yearly analysis [Post_1Y_scalar] Patches = () GatherWithInternal = (time_counter, time_centered, time_centered_bounds) TimeSeriesVars2D = (scmastot, scvoltot, scsshtot, scsshste, scsshtst, sctemtot, scsaltot, ibgheat_tot, sbgheat_tot) ChunckJob2D = NONE TimeSeriesVars3D = () ChunckJob3D = NONE Seasonal=OFF [Post_1Y_grid_T] Patches = () GatherWithInternal = (nav_lon, nav_lat, olevel, time_counter, time_centered, time_centered_bounds) TimeSeriesVars2D = ( ) ChunckJob2D = NONE TimeSeriesVars3D = (thetao, so) ChunckJob3D = 50Y Seasonal=OFF [Post_1Y_grid_U] Patches = () GatherWithInternal = (nav_lon, nav_lat, olevel, time_counter, time_centered, time_centered_bounds) TimeSeriesVars2D = (hfx, hfxba, hfxdiff, sozotaux) ChunckJob2D = NONE TimeSeriesVars3D = (umo, vozocrtx,vozoeivu) ChunckJob3D = 50Y Seasonal=OFF [Post_1Y_grid_V] Patches = () GatherWithInternal = (nav_lon, nav_lat, olevel, time_counter, time_centered, time_centered_bounds) TimeSeriesVars2D = ( ) ChunckJob2D = NONE TimeSeriesVars3D = ( ) ChunckJob3D = 50Y Seasonal=OFF [Post_1Y_diaptr_T] Patches = () GatherWithInternal = (nav_lat, olevel, time_counter, time_centered, time_centered_bounds) TimeSeriesVars2D = (zotemglo, zotematl, zotempac, zotemind, zotemipc, zosalglo, zosalatl, zosalpac, zosalind, zosalipc, zosrfglo, zosrfatl, zosrfpac, zosrfind, zosrfipc, sophtadv, sophtldf, sopstadv, sopstldf) ChunckJob2D = NONE TimeSeriesVars3D = () ChunckJob3D = NONE Seasonal=OFF [Post_1Y_diaptr_W] Patches = () GatherWithInternal = (nav_lat, olevel, time_counter, time_centered, time_centered_bounds) TimeSeriesVars2D = (zomsfglo, zomsfatl, zomsfpac, zomsfind, zomsfipc) ChunckJob2D = NONE TimeSeriesVars3D = () ChunckJob3D = NONE Seasonal=OFF