Changes between Version 27 and Version 28 of ESM2025-N-cycle


Ignore:
Timestamp:
09/06/22 10:39:04 (20 months ago)
Author:
klaurent
Comment:

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  • ESM2025-N-cycle

    v27 v28  
    66On this topic are working Marion Gehlen, Juliette Lathière, Didier Hauglustaine, Nicolas Vuichard and Karine Laurent. 
    77 
    8  * [wiki:ESM2025-N-cycle/Meetings Meetings] 
    9  * [wiki:ESM2025-N-cycle/Intermediate_conclusions Intermediate Conclusions] 
    10  * [wiki:ESM2025-N-cycle/Notebooks_list Notebooks list] 
    11  * [wiki:ESM2025-N-cycle/References References] 
    12  
    13 == Working Documents == 
    14 * Notebooks :  
    15    * (22/04/20) 2 different notebooks are useful : Data_viewer and Analyse_3_sflx_NAT_dyn 
    16       1. **Data_viewer**: To easily see a dataset. Interactive mode in order to change different variable at different time. 
    17       2. **Analyse_3_sflx_NAT_dyn**: The 3 datasets (transcom, bouwman, piscidee=Pisces+orchidee) are loaded. Difference are computed (with Bouwman as a reference). Plots are made per month with same scale. Then, a seasonal analysis is done, calculating means/min/max of each dataset per month/year/season. 
    18    * (22/05/23) compare three inventories by total emissions and repatition. 
    19       3. **Budget_inventories**: Using the output of Incasflx with the three inventories, different sums/computations/plots given percentages and charts per land and ocean, plots per latitude bands, per hemisphere of these emissions... 
    20    * (22/06/15) notebooks to construct charts from CEDS emissions --supplementary data mainly-- 
    21       4. **CEDS_charts_supllementary_data_N2O** and **Charts_N2O_CEDS** : Notebooks to reconstruct charts in the article of McDuffie 'A global anthropogenic emission inventory of atmospheric pollutants' (same notebooks exist with NH3 charts). It uses the emissions of N2O distributed per category (Agriculture, Energy, Industrial, Transportation, Residential, Commercial, Other, Solvents production and application, Waste, International Shipping) 
    22     * (22/08/04) 2 notebooks created: in relation with CEDS emissions. 
    23       5. **work_on_data_to_complete_sectors_with_unknows_categories** : Notebook in order to better understand repartition of subcategories that are not in CEDS emissions files and grouped in sectors. 
    24       6. **Transform_2000nc_from1970_to1999_via_CEDScsv** : To reconstruct geographical emissions from 1970 to 1999 from 2000's emissions and with a ratio computed thanks to csv's data. Need to use obelix' script `home/users/klaurent/CEDS_transform/nco_transform_1970_1999_ncfiles.sh` after this notebook (delete _FillValue mainly). 
    25  
    26 * Emissions files : 
    27   1. Bouwman : 360x180, created in 1999, Flux of agr waste burning, biofuel, biomass burning, deforestation, excreta, fossil fuel, industry, ocean, aquatic, soil 
    28   2. Transcom : 360x180, created in 2015, total flux of N,,2,,O from OCN, PISCES and EDGAR, ACTUAL PERIOD 
    29   3. Pisces (N2Oflx_OClim_CNRM-ESM2-1_piControl_r1i1p1f2_gn_185001-234912.nc), 362x294 (irregular grid), created in 2018, total flux of N2O for ocean  
    30   4. Orchidee (ORCHIDEE_SH1_fN2O.nc), 720x360, created in 2022, total flux of N2O for land surfaces 
    31   5. CEDS emissions from McDuffie/Hoesly 
     8You will find information on the evolution of the project on these different pages: 
     9 * [wiki:ESM2025-N-cycle/Meetings Meetings]: report of meetings every 15 days; 
     10 * [wiki:ESM2025-N-cycle/Intermediate_conclusions Intermediate Conclusions]: some partial conclusions; 
     11 * [wiki:ESM2025-N-cycle/Notebooks_list Notebooks list]: description of working documents; 
     12 * [wiki:ESM2025-N-cycle/References References]: some interesting references. 
    3213 
    3314 
    3415 
    35 * //Bouwman Inventory// : 
    36   1. 846 N,,2,,O emission measurements in agricultural fields and 99 measurements for NO emissions 
    37   2. The data set includes literature reference; location of the Measurement; climate; soil type, texture, organic C content, N content, drainage, and pH; residues left in the field; crop; fertilizer type; N application rate; method and timing of fertilizer application; NH,,4,,+ application rate (for organic fertilizers), N,,2,,O/NO emission/denitrification (expressed as total over the measurement period, as % of N rate, and as % of N rate accounting for control); measurement technique; length of measurement period; frequency of the measurements; and additional information, such as year/season of measurement, information on soil, crop or fertilizer management, specific characteristics of the fertilizer used, and specific weather events important for explaining the measured emissions. 
    38   3. global gridded (1°x1° resolution) data bases of soil type, soil texture, NDVI (vegetation indices) and climate. 
    39   4. global emission thus calculated is 6.8 Tg N,,2,,O-N y-1. The tropics (± 30° of the equator) contribute 5.4 Tg N,,2,,O-N y-1 and the emission from extra-tropical regions (poleward of 30°) is 1.4 Tg N,,2,,O-N y-1 . 
    40  
    41  
    42 * //Transcom Inventory// : 
    43   1. "Emissions from natural soils (6–7 TgN yr −1 ) account for 60–70 % of global N2O emissions (Syakila and Kroeze, 2011; Zaehle et al., 2011). The remaining 30–40 % of emissions is from oceans (4.5 TgN yr −1 )" 
    44   2. Five different inversion frameworks (chemistry transport model) : MOZART4 (2.5° × 1.88°), ACMt42167 (2.8° × 2.8°), TM3 (5.0° × 3.75°), TM5 (6.0° × 4.0°), LMDZ4 (3.75° × 2.5°). 
    45   3. Data set from Orchidee O-CN, Pisces, edgar-4.1, gfed-2 and from different category (terrestrial biosphere, ocean, waste water, solid waste, solvents, fuel prod, ground transport, industry combustion, residential and other combustion, shipping, biomass burning) 
    46  
    47 * Values of N,,2,,O emissions per inventory : 
    48  
    49 ||  (MtN/yr) ||   Ocean  ||   Land   || Total ||  (MtN,,2,,O/yr) ||  Ocean  ||   Land   || Total || 
    50 ||**Bouwman**  || 3.595 || 7.531 || 11.126 || xxx || 5.650 || 11.835 || 17.485 || 
    51 ||**Transcom** || 4.222 || 10.573 || 14.795 || xxx || 6.634 || 16.614 || 23.248 || 
    52 ||**Piscidee** || 3.962 || 7.107 || 11.069 || xxx ||6.226 || 11.168 || 17.394 || 
    53  
    54 * Comparison between Incasflx outputs and masks on NetCDF files: 
    55  
    56 ||   ||||||     -   Output INCASFLX    -    ||||||  -   Notebook computing (FracMask) -  ||||||     -  Notebook computing (0/1 Mask)  -   || 
    57 ||   (MtN2O/yr)   ||   Ocean  ||   Land   || Ratio O/L ||   Ocean  ||   Land   || Ratio O/L ||  Ocean  ||   Land   || Ratio O/L || 
    58 ||**Bouwman**  ||  5.6505  ||  11.835  ||  0.478  ||  6.58   ||  10.945  ||  0.6012  ||  5.973  ||  11.552  ||  0.517    || 
    59 ||             ||   32.3%  ||   67.7%  ||         ||  37.6%  ||   62.4%  ||          ||  34.1%  ||   65.9%  ||           || 
    60 ||**Transcom** ||   6.634  ||  16.614  ||  0.399  ||  8.879  ||  14.421  ||  0.616   ||  8.118  ||  15.184  ||   0.535   || 
    61 ||             ||   28.5%  ||   71.5%  ||         ||  38.1%  ||   61.9%  ||          ||  34.8%  ||   65.2%  ||           || 
    62 ||**Piscidee** ||   6.226  ||  11.168  ||  0.557  ||  6.651  ||  10.782  ||  0.617   ||  6.095  ||  11.339  ||   0.538   || 
    63 ||             ||   35.8%  ||   64.2%  ||         ||  38.2%  ||   61.8%  ||          ||  34.9%  ||   65.1%  ||           || 
    64  
    65  
    66 __General remarks__: Variable for Bouwman = fn2o_oce & fn2o_soil. Land emissions > Ocean emissions. Ocean emissions ~ 6 Mt/yr. Land emissions -> differences because of different period (pre-industrial & nowadays). Per line, Ocean+Land are equal independently of the calculation made. 
    67  
    68 * CEDS emissions for N,,2,,O (and NH,,3,,): 
    69 [[Image(N2O_CEDS_supplementary_avion.png, 700px)]] 
    70 [[Image(NH3_CEDS_supplementary.png, 700px)]] 
    71  
    72 == Meeting Reports ==  
    73  
    74  
    75 === On Wednesday, 24th August ===  
    76  
    77 In person with Didier and Nicolas. PDF support [see attached file[[Image(meeting_220824.pdf)]]]. 
    78  
    79 Resume of august simulations and work. 
    80  
    81 * Transformation of CEDS emissions: from 1970 to 1999, use of netCDF file 2000 with a factor per sector to create netcdf emissions. Notebooks **Transform_2000nc_from1970_to1999_via_CEDScsv.ipynb** and **work_on_data_to_complete_sectors_with_unknows_categories.ipynb** 
    82 * 2 simulations: L39.v03 as a base (pre-industrial, constrained to 285ppm), then pi_piscideeL (free, pre industrial, 40 years). 
    83  
    84 Results seem good regarding vertical pressure profile, total loss N,,2,,O, pattern of emissions. Need to investigate more and continue. 
    85  
    86  
    87 __//**TO DO**//__ 
    88 * Make graph of pressure for those two simulations, 
    89 * Continue piscideeL 5 years and compute mean of loss, 
    90 * Resume differences between former simulations, 
    91 * Re-create netCDF files with only manure_management (and not soil_emissions) for agricultural sector. 
    92  
    93  
    94  
    95 === On Tuesday, 12th July ===  
    96  
    97 In person with Didier. 
    98  
    99 Discussion of simulations and set-up to make. 
    100  
    101 Check N,,2,,O loss in 1999 for v03 simulation (to be continued) and create pi_piscideeL run from it to turn 40 years (1980-2020, L means libre/free/not rescaled at 285 ppm). 
    102  
    103 Explanation of how to create ncfiles from 1970 to 1999 from 2000's geographical repartition and ratio computed with total emissions per sector (csv file). 
    104 Once done, adapt ciclad's code to transform them on Incasflx 144x142 grid. 
    105  
    106  
    107 === On Monday, 11th July ===  
    108  
    109 In person with Didier, Nicolas and Juliette. 
    110  
    111 Conversation on Workshop N,,2,,O source in Toulouse (6-8 July) : very interesting to see different communities (observation, inversion, modellers) 
    112  
    113 First result with a decreasing total emission (from 285 ppm to 280 ppm in 20 years) : seems to be promising. 
    114  
    115 Reflection on what is needed in order to **move to coupled system**. Remembrance of deadlines and expectations for ESM2025 project. Land emission per year ok, Nicolas will ask to Sarah or Laurent to have same emission for ocean. After that, work with Thibault Lurton and/or Anne Cozic to adapt code. 
    116  
    117 **How to reconstruct anthropologic N,,2,,O emission between 1850 and 1970 ?**  Try to find some proxy (population or chemical species that exists during this period) 
    118  
    119  
    120 __//**TO DO**//__ 
    121  * Reconstruct N,,2,,O emission with CEDS inventory with rescaling year by year (height with total budget and spatial with year 2000) 
    122  * When all is fixed, simulation from 1970 to 2015 in order to see if the model is coherent or not (with a rescaling at ~300ppm : CMIP6). 
    123  * Find information on Japanese model (the one of Prabir Patra) 
    124  * Get more information on Pisces simulation (does it use flag or many change in order to have it? Is it possible to have emissions per year from pre-industrial to present time?) 
    125  
    126 __//**Next**//__ 
    127  * Computation of loss rate 
    128  * Coupled model (with Anne and Thibaut) 
    129  
    130  
    131  
    132 === On Wednesday, 29th June ===  
    133  
    134 In person with Didier and Juliette + in visio with Marion. 
    135  
    136 Explanation of the remapping problem with pisces' file. The common CDO functions doesn't work (not conservative + white columns or column with outliers). 
    137  
    138 Solution : See Germain if he has some same files (grid 294x362 and not 292x292) + in correspondence with O. Marti for a better interpolation. //work in progress// 
    139  
    140  
    141 __//**TO DO**//__ 
    142  * Understand and find a solution to the remapping problem. 
    143  * Send an e-mail to Sarah Berthet, in charge of different projects on N,,2,,O : could be seen during the N,,2,,O workshop in Toulouse (from 6th to 8th July). 
    144  * Simulations in 39 layers with invariants outputs in two different configurations. 
    145  * On profile picture, try to invert axis + use logarithm scale. 
    146  * Check availabilities for next meetings. 
    147  
    148 ==== + Meeting with Ddiier ==== 
    149  * See different scripts to compute the N,,2,,O-loss and N,,2,,O-burden. 
    150  * Show what and how to change Incasflx files in order to use a irregular grid as input (avoiding the remapping problem). 
    151  
    152  
    153 === On Wednesday, 15th June ===  
    154  
    155 In person with Nicolas and Didier. 
    156  
    157 Waiting for the first result with the 39-layers configuration.  
    158  
    159 After the General Assembly of ESM2025, pisces emissions seems to be too high... In fact, there was a problem of units conversion (mostly because of a misunderstanding of input units (mol N rather than mol N,,2,,O). 
    160  
    161 Nicolas asked if lightning is implemented because it seems to have an total emission between 0.5 and 2 Tg/Nyr. 
    162  
    163 Some works will be presented during the N,,2,,O workshop in Toulouse from July, 6th to 8th. 
    164  
    165 __//**To DO**//__ 
    166 * Analyse the vertical profile when the 39-layers configuration of one year is done. 
    167 * + See Didier for the next steps. 
    168 * Re-compute the calculation with the good value of pisces emissions. 
    169  
    170 === On Wednesday, 1st June ===  
    171  
    172 In person with Nicolas, Juliette, Didier. Special guest : Anne. 
    173  
    174 Special demands to Anne :  
    175 * Passage from 79 layers to 39 : is it easy and feasible ? Seems to change some configuration's files (oxidants for example). 
    176 * svn for INCA ok, if need to change orchidee's sources, ask to Nicolas (but no need for this moment). 
    177 * Make some time series for long run test (feasible with the training course), 
    178 * Add output variables that would be computing into the code (have to see Anne when it will be time). 
    179  
    180 Show results on Bouwman (with aqua and soil flux): slight difference again. Using mask 0/1 (and not fractional one) is better. 
    181  
    182 Show on-going result of CEDS inventory (from McDuffie): problem with units, needs to calculate annual mean to correspond to article's images. 
    183  
    184 __//**To DO**//__ 
    185 * Finish charts of CEDS inventory. Notebooks used: CEDS_charts_supplementary_data_N2O.ipynb and Charts_N2O_CEDS.ipynb. 
    186 * Schedule a meeting with Didier when 39 layers' configuration is ready. 
    187 * Make simulation with oce and soil flux for Bouwman (not with aqua !!). 
    188  
    189 === On Wednesday, 18th May ===  
    190  
    191 In person with Juliette, Didier, Nicolas. 
    192  
    193 * Notebook **Budget_inventories** : total budget of N,,2,,O emissions (in tables), differences found between outputs INCASFLX and calculations in notebook (with mask, area and change units), different charts (by latitude, by land/ocean part, with histograms...) 
    194  
    195  
    196 Using the mask with fraction:  
    197  
    198 || FracMask  ||||||     -   Output INCASFLX    -    ||||||     -  Notebook computing   -   || 
    199 || (Mt/yr) ||   Ocean  ||   Land   || Ratio O/L ||   Ocean  ||   Land   || Ratio O/L || 
    200 ||**Bouwman**  || 5.650486 || 11.83547 || 0.478  ||  13.967 ||  16.726  ||  0.835   || 
    201 ||             ||  32.3%   || 67.7%   ||        ||  45.5% ||  54.5% ||    || 
    202 ||**Transcom** || 6.634 || 16.614 || 0.399     ||  8.879 ||  14.421 ||  0.616   || 
    203 ||             ||  28.5%  || 71.5%  ||       ||  38.1% || 61.9% ||  || 
    204 ||**Piscidee** || 6.432 || 7.107 || 0.905      ||  6.579 ||  6.989 ||  0.941   || 
    205 ||             ||47.5%  ||  52.5%  ||        ||  48.5% ||  51.5% ||       || 
    206  
    207 Using the mask with 0/1 values: 
    208  
    209 || 0/1 Mask ||||||     -   Output INCASFLX    -    ||||||     -  Notebook computing   -   || 
    210 || (Mt/yr) ||   Ocean  ||   Land   || Ratio O/L ||   Ocean  ||   Land   || Ratio O/L || 
    211 ||**Bouwman**  || 5.650486 || 11.83547 || 0.478      ||  12.797 ||  17.899 ||  0.714   || 
    212 ||             || 32.3% || 67.7%||          ||  41.7% ||  58.3% ||   || 
    213 ||**Transcom** || 6.634 || 16.614 || 0.399     ||  8.118 ||  15.184 ||  0.535   || 
    214 ||             || 28.5%  || 71.5%  ||       ||  34.8% ||  65.2% ||     || 
    215 ||**Piscidee** || 6.432 || 7.107 || 0.905      ||  6.174 ||  7.395 ||  0.834   || 
    216 ||             || 47.5% || 52.5% ||          ||  45.5% ||  54.5% ||      || 
    217  
    218  
    219 Those differences can be explained by the different power that may exist between marine or continental fluxes at coasts notably. With mask, these two fluxes have the same importance so it changes total flux. 
    220  
    221 Values per latitudes: 
    222 || (Tg/yr)  ||90-30S|| 30S-0||0-30N||30-90N||Total|| 
    223 || **Bouwman**  ||5.728||7.115||9.948||8.392||31.183|| 
    224 || **Trancsom** ||2.714||7.432||8.762||4.857||23.765|| 
    225 || **Piscidee** ||1.736||4.413||4.392||3.302||13.843|| 
    226  
    227  
    228 Calcul file by file: 
    229 From Transcom (orchidee+pisces) : (no mask + not output of sflx) -> correspond to values of table 2 thompson part 1. 
    230  
    231 ||  ||||||     -   Output INCASFLX    -    ||||||     -  Notebook computing   -   || 
    232 || (Mt/yr) ||   Ocean  ||   Land   || Ratio O/L ||   Ocean  ||   Land   || Ratio O/L || 
    233 ||**Transcom**  ||  6.634174 || 16.61481 ||  0.399293   || 4.23125 || 10.59692 || 0.399291    ||  
    234  
    235  
    236  
    237 Transcom is not a pre-industrial inventory, it's actual. So, it's better to work with piscidee inventory. 
    238  
    239  
    240 __//**To DO**//__ 
    241 * Modify Bouwman run to take only 'oce' and 'soil' variables -> relaunch notebook to compare if it's better, 
    242 * Continue modification in INCA's code. 
    243  
    244 === On Friday, 13th May === 
    245  
    246 Informal with Didier. 
    247  
    248 Preparation to change INCA's code in Irene. 
    249  
    250 * Modify inca.card to take new NAT files and BBG from ciclad. 
    251 * Modify mksflx_p2p.F90 to put flx_n2o_ant to zero and add aflux terms. 
    252 * Modify sflx_inti.F90 to take into account BBG emissions. 
    253 * Modify set_ub_vals.F90 to rescale N,,2,,O flux (with parallel part and constant N,,2,,O flux at 285 ppb) 
    254  
    255 Launch different runs in order to check each step. 
    256  
    257 __//**Next**//__ 
    258 * Change ANT in ciclad, 
    259 * Put flx_n2o_ant to 0, 
    260 * Erase the rescaling, 
    261 * Add N2O loss as an output... 
    262  
    263 === On Wednesday, 4th May ===  
    264  
    265 In person with Juliette and Marion. 
    266  
    267 * Presentation of the Wiki page. 
    268 * Presentation of the two notebooks. 
    269 * Discussion on the different conceptions used in ocean and land communities (different grids, different units in the flux (mol/m2/s vs kg/m2/s)...). 
    270  
    271 On Analyse_3_sflx_NAT_dyn.ipynb, discussions on visualization with scale, calculation of the full emission on earth per year or per month. 
    272  
    273 __//**To DO**//__ 
    274 * Make an analysis per month, per hemisphere, in order to get the total flux emissions for each inventory. 
    275 * Take information on where the inventories come from (especially Bouwman and Transcom). 
    276 * Draw tables which resume datas used, total emissions, models used in files... 
    277 * Compare native grid and regular grid for pisces. 
    278 * Compare values of each file used with outputs of INCASFLX. 
    279 * Compare total emissions on ocean and land with literature (ciais, ippc) and Bouwman and Trancsom inventories. 
    280  
    281 === On Wednesday, 20th April ===  
    282  
    283 In person with Nicolas. 
    284  
    285 Discussion on: 
    286  
    287 * New page on Wiki/igcmg (this one !) 
    288 * Explanation of the created notebooks (Data_viewer and Analyse_3_sflx_NAT_dyn) 
    289   * Data_viewer : interactive ok but add choices/texts... 
    290   * Analyse_3_sflx_NAT_dyn : change the seasonal analysis made. 
    291 * Test with Nicolas' network to know about access to my notebooks. 
    292 * Speak about dods/orchidee to avoid downloading images on wiki. 
    293  
    294 Now, focus on N2O with long living time, but after, we can test on other compounds. 
    295  
    296 __//**To DO**//__ 
    297 * Change colorbar with mean+/-std, add some texts on Notebooks and add units on charts 
    298 * Erase rescaling in Bouwman to have a better comparison 
    299 * Analyse the 3 datasets in a different way : global tables with sum per year, per region, per type (ocean/land) (watch out units) 
    300 * Give "procedure" and access to notebooks to all 
    301 * Compare with Auburn data (and Tian 2020) 
    302 * Look at Mendeley (or Zottero) for bibliography 
    303  
    304 Nicolas: Paths to have regional masks (from Transcom) 
    305  
    306  
    307  
    308 === On Wednesday, 6th April ===  
    309  
    310 In Visio with Nicolas, Juliette, Didier, Marion. 
    311  
    312 Mainly, this meeting was to talk a bit more about the project and the work I(=Karine) can make before the training session (April 14th & 15th). 
    313  
    314 Discussion on: 
    315 * the first result made with INCAFLX and 3 different inventories, 
    316 * the planning we can set up (which kind of simulation...) 
    317 * the impact of N2O on chemistry (if everything is coupled),  
    318 * the certainty (or uncertainty) of inventories used (to determine an appropriate scaling),  
    319 * the work of Pierre for aquatic emissions (importance of river emissions), 
    320  
    321 //Planning :// Run simulation without chemistry and no rescaling, first for pre-industrial, then until now to see/understand the correction we can make on both period (a different correction for each period). 
    322  
    323 => This have to be detailed and confirmed 
    324  
    325 Maybe run only 10 years to know where are sinks, determine some lifetime/seasonal cycle in order to calculate the scaling we may use. 
    326  
    327 Suggestions to work with the GES branch for the code (branch for coupled model with CO,,2,, , CH,,4,, and N,,2,,O) 
    328  
    329 **Meeting every 2 weeks same day, same time (ie, Wednesday at 10:00)** 
    330  
    331  
    332 __//**To DO**//__ 
    333 * Ask for writing a Wiki page on IGCMG  
    334 * Log on JupyterHub 
    335 * Make an "experiment plan" for future simulations 
    336 * Analyse the results that I've already (seasonal analyses, comparison between inventories with Bouwman as a reference, recap origin/grid resolution...) 
    337 * Show the aquatic variable of Bouwman (and maybe some others) 
    338  
    339 Didier : emissions file for pre-industrial fires to be send to Karine 
    340  
    341 == Bibliography == 
    342