Changes between Version 12 and Version 13 of IPSLCM6/MOSAIX

Timestamp:

12/12/18 16:57:22 (5 years ago)

Author:

omamce

Comment:

--

IPSLCM6/MOSAIX

@@ -1 @@
-=== MOSAIX ===
+= MOSAIX =
+[[PageOutline]]
 
 MOSAIX is a small set of fortran routines, bash scripts, python scripts and xml files allowing to generate coupling weights for IPSL Earth System Model. It is under development, and presently not used by the production runs. It aims to replace the old MOSAIC software. It uses XIOS as a library to compute weights. In the present state, it can handle ORCA, LMDZ lon/lat and DYNAMICO grids.
@@ -30 +31 @@
 
 == Requirements ==
+* Fortran compiler, C++ compiler, MPI.
 * A working [[http://forge.ipsl.jussieu.fr/ioserver|XIOS]] library. Revision 1615 is known to work.
 * fcm version 1.2
 * NetCDF fortran librairies. See [[http://forge.ipsl.jussieu.fr/ioserver|XIOS]] for a suitable version.
-* Python, version>3.6 with [[http://unidata.github.io/netcdf4-python/|netCDF4]] and [[http://www.numpy.org|numpy]] modules. Python version>2.7 mights work, but has not been tested recently.
+* Python, version>=3.6 with [[http://unidata.github.io/netcdf4-python/|netCDF4]] and [[http://www.numpy.org|numpy]] modules. Python version>=2.7 mights work, but has not been tested recently.
+* Bash version>=4.
 * [[http://nco.sourceforge.net|NCO]]. Version 4.6.0 is known to work.
 
@@ -43 +46 @@
 * Weight files {{{rmp_*}}}. Should have a rather explicit name.
 * Diagnostic file used for debug {{{dia_*.nc}}} for each rmp file, except for runoff and calving. Debug information are directly in weight files in this last case.
-* Grid description file for OASIS-MCT {{{grids.nc}}}, {{{areas.nc}}} and {{{masks.nc}}}
+* Grid description file for OASIS-MCT {{{grids.nc}}}, {{{areas.nc}}} and {{{masks.nc}}}.
 * A file containing the fraction of ocean in each atmosphere grid box. For instance {{{ICO40_grid_maskFrom_eORCA1.2.nc}}}.
-* A README file. Include a checksum for each generated files.
+* A README file. Includes a checksum for each generated files.
 
 == Scripts and codes ==
@@ -55 +58 @@
 * '''update_xml.py'''. Python script used to perform on the fly editing of xml files. Used by {{{CreateWeights.bash}}}. more information with {{{python update_xml.py -h}}}.
 
-* '''iodef_atm_to_oce.xml''' and '''iodef_oce_to_atm.xml'''.  xml files read by {{{interpol.f90}}}. This file are edited by {{{update_xml.py}}}.
+* '''iodef_atm_to_oce.xml''' and '''iodef_oce_to_atm.xml'''.  xml files read by {{{interpol.f90}}}. These files are edited by {{{update_xml.py}}}.
 
 * '''MOSAIX/src/MOSAIX/interpol.f90'''. Fortran source using the XIOS library. 
@@ -93 +96 @@
 * ''oorc''. ORCA grid at ''T'' point. Masked on land, duplicated (from periodicity) point masked, with area equal 1.
 
-== Generating initial grid file ==
+== Generating input grid files ==
 
 ''' Generating icosahedral grid in double precision using XIOS:'''
@@ -101 +104 @@
  * File {{{context_lmdz.xml}}} :
 
-{{{
+{{{#!xml
 .....
  <domain_definition> 
@@ -107 +110 @@
      <domain id="dom_glo_p8"  domain_ref="dom_glo"  prec="8" / <
      <domain id="greordered"  domain_ref="dom_glo">
-     <reorder_domain invert_lat="true" shift_lon_fraction="0 
+     <reorder_domain invert_lat="true" shift_lon_fraction="0"
     </domain> 
  </domain_definition>
@@ -130 +133 @@
 
 
-{{{
+{{{#!xml
 <field_definition level="1" prec="4" operation="average" freq_op="1ts" enabled=".true." default_value="9.96921e+36" domain_ref="dom_glo">
     <field_group id="fields_2D_p8" grid_ref="grid_glo_p8" prec="8"> 
@@ -147 +150 @@
  * File file_def_histmth_lmdz.xml: (this can also be written in file_def_histday_lmdz.xml)
 
-{{{
+{{{#!xml
 <file_definition> 
     <file_group id="defile"> 
@@ -158 +161 @@
                  
           <field_group grid_ref="grid_glo_p8" ts_enabled="true" freq_op="1d" >  
-              <field field_ref="fract_oce_plus_sic_p8"    level="1" > fract_oce + fract_sic </field>   
-              <field field_ref="mask_oce_plus_sic_p8"    level="1" > ((fract_oce + fract_sic) &gt; 0) ? 1 : 0 </field> 
+              <field field_ref="fract_oce_plus_sic_p8" level="1" > fract_oce + fract_sic </field>   
+              <field field_ref="mask_oce_plus_sic_p8" level="1" > ((fract_oce + fract_sic) &gt; 0) ? 1 : 0 </field> 
           </field_group> 
         </file>