Changes between Version 7 and Version 8 of Doc/Models/NEMO


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Timestamp:
10/10/19 14:59:24 (5 years ago)
Author:
cetlod
Comment:

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  • Doc/Models/NEMO

    v7 v8  
    1515# opa9.card # 
    1616 
    17  
    1817## Model version  ## 
    1918 
    20 The choice of forcings used for the simulations depends on the model version. The available forcings correspond to NEMO versions  v3_2,  v3_3,  v3_4. 
     19The choice of forcings used for the simulations depends on the model version. The available forcings correspond to NEMO versions  for now is v3.6_stable 
    2120 
    22 {{{ 
    23 OPA_version=v3.6_stable 
    24 R_FORCING=${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version} 
     21 * OPA_version=v3.6_stable  is the version where to find all the data needed to perform de csimulatin 
     22 * mesh_mask=n to output the grid ( named mesh_mask.nc) 
     23 * OutputLevel=10  ( the level of the output you : 10 == full  ; 1 ==  less ) 
    2524 
    2625}}} 
    … …  
    4443{{{ 
    4544 
    46 [InitialStateFiles] 
    47 List=   (${SUBMIT_DIR}/PARAM/EMPave_old.dat, EMPave_old.dat) 
    48  
    49  
    50 [BoundaryFiles] 
    51 List=   (${opa9_UserChoices_R_FORCING}/u_10.15JUNE2009_fill.nc            , u_10.nc), \ 
    52         (${opa9_UserChoices_R_FORCING}/v_10.15JUNE2009_fill.nc            , v_10.nc), \ 
    53         (${opa9_UserChoices_R_FORCING}/t_10.15JUNE2009_fill.nc            , t_10.nc), \ 
    54         (${opa9_UserChoices_R_FORCING}/q_10.15JUNE2009_fill.nc            , q_10.nc), \ 
    55         (${opa9_UserChoices_R_FORCING}/ncar_rad.15JUNE2009_fill.nc        , radsw.nc), \ 
    56         (${opa9_UserChoices_R_FORCING}/ncar_rad.15JUNE2009_fill.nc        , radlw.nc), \ 
    57         (${opa9_UserChoices_R_FORCING}/ncar_precip.15JUNE2009_fill.nc     , precip.nc), \ 
    58         (${opa9_UserChoices_R_FORCING}/ncar_precip.15JUNE2009_fill.nc     , snow.nc), \ 
    59         (${opa9_UserChoices_R_FORCING}/weights_coreII_2_eorca1_bilinear.nc, weights_bilinear.nc), \ 
    60         (${opa9_UserChoices_R_FORCING}/weights_coreII_2_eorca1_bicubic.nc , weights_bicubic.nc) 
     45forcing=core 
     46R_FORCING=${R_IN}/OCE/NEMO/FORCINGS/COREII 
     47ListForcing=(u_10_CORE2_fill v_10_CORE2_fill t_10_CORE2_fill q_10_CORE2_fill ncar_rad_CORE2_fill ncar_precip_CORE2_fill) 
     48YearForcingInit=1948 
     49YearForcingEnd=2009 
    6150 
    6251}}} 
     52 
    6353 
    6454## Initial states and boundary conditions ## 
    … …  
    6656The initial states and the boundary conditions are listed in the ''' Boundary Files ''' section   [[BR]] 
    6757All those files are described on the official NEMO website: http://www.nemo-ocean.eu/Using-NEMO/Configurations/ORCA2_LIM, section ''' Configuration Inputs '''  
     58 
    6859{{{ 
    6960 
    70 ListNonDel= (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/ahmcoef.nc, .), \ 
    71             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/bathy_meter.nc, .), \ 
    72             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/coordinates.nc, . ), \ 
    73             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/conservative_temperature_WOA13_decav_Reg1L75_clim.nc, .), \ 
    74             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/absolute_salinity_WOA13_decav_Reg1L75_clim.nc, .), \ 
    75             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/sali_ref_clim_monthly.nc, .), \ 
    76             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/sss_absolute_salinity_WOA13_decav_Reg1L75_clim.nc, .), \ 
    77             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Goutorbe_ghflux.nc, .),\ 
    78             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/runoff-icb_DaiTrenberth_Depoorter_eORCA1_JD.nc, .),\ 
    79             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/subbasins.nc, .),\ 
    80             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/merged_ESACCI_BIOMER4V1R1_CHL_REG05.nc, .),\ 
    81             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/mixing_power_bot.nc, .),\ 
    82             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/mixing_power_pyc.nc, .),\ 
    83             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/mixing_power_cri.nc, .),\ 
    84             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/decay_scale_bot.nc, .),\ 
    85             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/decay_scale_cri.nc, .),\ 
    86             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/weights_WOA13d1_2_eorca1_bilinear.nc, .), \ 
    87             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/weights_3D_WOA13d1_2_eorca1_bilinear.nc, .), \ 
    88             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/weights_reg05_2_eorca1_bilinear.nc, .), \ 
    89             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/weights_Goutorbe1_2_eorca1_bilinear.nc, .) 
     61ListNonDel= (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/ahmcoef.nc, .), \ 
     62            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/bathy_meter.nc, .), \ 
     63            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/coordinates.nc, . ), \ 
     64            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/coordinates_xios.nc                , .  ), \ 
     65            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/maskMFO_opa.nc, .  ), \ 
     66            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/conservative_temperature_WOA13_decav_Reg1L75_clim.nc, .), \ 
     67            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/absolute_salinity_WOA13_decav_Reg1L75_clim.nc, .), \ 
     68            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/sali_ref_clim_monthly.nc, .), \ 
     69            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/sss_absolute_PHC2_salx_2004_08_03_clim-eORCA1.nc, sss_absolute_salinity.nc), \ 
     70            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Goutorbe_ghflux.nc, .),\ 
     71            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/subbasins_v10.nc                        , subbasins.nc    ), \ 
     72            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/merged_ESACCI_BIOMER4V1R1_CHL_REG05.nc, .),\ 
     73            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/mixing_power_bot.nc, .),\ 
     74            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/mixing_power_pyc.nc, .),\ 
     75            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/mixing_power_cri.nc, .),\ 
     76            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/decay_scale_bot.nc, .),\ 
     77            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/decay_scale_cri.nc, .),\ 
     78            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/weights_WOA13d1_2_eorca1_bilinear.nc, .), \ 
     79            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/weights_3D_WOA13d1_2_eorca1_bilinear.nc, .), \ 
     80            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/weights_reg05_2_eorca1_bilinear.nc, .), \ 
     81            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/weights_Goutorbe1_2_eorca1_bilinear.nc, .) 
    9082 
    9183}}} 
    … …  
    9789 * The initial states of a few passive tracers come from monthly (NO3, PO4, O2, Si) and annual (DIC, Alkalinity) climatologies or from simulation outputs (Iron, DOC). The other PISCES tracers are initialized by constant values in the model. 
    9890 * the files containing the external nutrient uptake are also listed below: 
    99     * dust_INCA_eORCA_R1.nc             : annual climatology of the nutrient uptake by dust 
     91    * DUST_INCA_LOI6012-histAER_1M_${year}.nc             : interannaul file of the nutrient uptake by dust derived from the INCA model 
    10092    * pmarge_etopo_eORCA_R1.nc       : annual climatology of iron uptake by sediments 
    10193    * river_global_news_eORCA_R1.nc  : annual climatology of nutrient uptake by rivers 
    102     * ndeposition_Duce_eORCA_R1.nc : annual climatology of nitrogen deposit 
     94    * Ndep_input4MIPs_surfaceFluxes_CMIP_NCAR-CCMI-2-0_gn_${year}01-${year}12-clim.nc : interannual files of nitrogen deposit derived for the input4MIPS database 
    10395    * Solubility_T62_Mahowald_eORCA_R1.nc : solubility of iron 
    10496 
    10597{{{ 
    10698 
     99 
    107100[BoundaryFiles] 
    108 List=   () 
    109 ListNonDel= (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/DIC_GLODAP_annual_eORCA_R1.nc, .       ), \ 
    110             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Alkalini_GLODAP_annual_eORCA_R1.nc, . ) \ 
    111             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/O2_WOA2009_monthly_eORCA_R1.nc, . ), \ 
    112             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/PO4_WOA2009_monthly_eORCA_R1.nc, .), \ 
    113             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Si_WOA2009_monthly_eORCA_R1.nc, .), \ 
    114             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/DOC_PISCES_monthly_eORCA_R1.nc, .), \ 
    115             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Fer_PISCES_monthly_eORCA_R1.nc, .), \ 
    116             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/NO3_WOA2009_monthly_eORCA_R1.nc, .), \ 
    117             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/dust_INCA_eORCA_R1.nc, .), \ 
    118             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/pmarge_etopo_eORCA_R1.nc, .), \ 
    119             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/river_global_news_eORCA_R1.nc, .), \ 
    120             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/ndeposition_Duce_eORCA_R1.nc, . ), \ 
    121             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/par_fraction_gewex_clim90s00s_eORCA_R1.nc, .), \ 
    122             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Solubility_T62_Mahowald_eORCA_R1.nc, .) 
     101List=       (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Dust_inca_LOI/DUST_INCA_LOI6012-histAER_1M_${year}.nc, dust.orca.nc       ), \ 
     102            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Ndep_input4MIPs/Ndep_input4MIPs_surfaceFluxes_CMIP_NCAR-CCMI-2-0_gn_${year}01-${year}12-clim.nc , ndeposition.orca.nc ) 
    123103 
     104 
     105ListNonDel= (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/TDIC_GLODAPv2.1_annual_r360x180xl75.nc, data_DIC_nomask.nc ), \ 
     106            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/TALK_GLODAPv2.1_annual_r360x180xl75.nc, data_ALK_nomask.nc ), \ 
     107            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/O2_WOA2009_monthly_r360x180xl75.nc    , data_OXY_nomask.nc ), \ 
     108            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/PO4_WOA2009_monthly_r360x180xl75.nc   , data_PO4_nomask.nc ), \ 
     109            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Si_WOA2009_monthly_r360x180xl75.nc    , data_SIL_nomask.nc ), \ 
     110            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/DOC_PISCES_monthly_r360x180xl75.nc    , data_DOC_nomask.nc ), \ 
     111            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Fer_PISCES_monthly_r360x180xl75.nc    , data_FER_nomask.nc ), \ 
     112            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/NO3_WOA2009_monthly_r360x180xl75.nc   , data_NO3_nomask.nc ), \ 
     113            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/weights_3D_r360x180_eorca1_bilinear.nc, weights_3D_r360x180_bilin.nc ), \ 
     114            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Dust_inca_LOI/weights_LMD144142_eORCA1_bilinear.nc , weights_lmd144142_bilin.nc ), \ 
     115            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/pmarge_etopo_eORCA_R1.nc              , bathy.orca.nc      ), \ 
     116            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/river_global_news_eORCA_R1.nc         , river.orca.nc      ), \ 
     117            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Ndep_input4MIPs/weights_CMIP_NCAR-CCMI_eORCA1_bilinear.nc, weights_2d_bilin.nc), \ 
     118            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/par_fraction_gewex_clim90s00s_eORCA_R1.nc, par.orca.nc        ), \ 
     119            (${R_IN}/OCE/NEMO/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Solubility_T62_Mahowald_eORCA_R1.nc      , solubility.orca.nc ) 
    124120}}} 
    125121