wiki:incadev/IPSLCM6-AER

Version 141 (modified by ramiro, 4 years ago) (diff)

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INCA AER LR


IPSLCM6-AER

0. Previous Steps

  1. (Apr. 2019) Review of simulations and AerChemMIP procedure => documented on a wiki at inca1
  2. (July-Sep.2019) PING FILES: Done with Python Software (by Ramiro Checa-Garcia, code at OBELIX computer). The ping files are used to translate the default netcdf files of IPSL model into the variables required by AerChemMIP:
    1. Extract from original spreadsheets of AerChemMIP variable requests Tables with variables of AerChemMIP dreq files
    2. From those variables: the software created the LMDz, INCA, NEMO and ORCHIDEE ping files: IPSLCM6-AER and IPSLCM5A2CHT1
    3. The LMDz and INCA files were peer-reviewed by Yves and Didier
  3. (Oct-Nov.2019]) EQUILIBRATION-TUNNING of IPSLCM6-AER => Changed cloud parameters to have nettop consistent with IPSLCM6 (without interactive aerosols).

1. Which simulations

Full set of simulations to be run

NameSim-NameTierMin. ConfigPeriodKindNotes Link Parent Sim.Uploaded
piClim-control LOI61-LR-AER-piclim-Control-vF 1 Atm+Aer 30 years Fixed SST ERF PI sst, ice climatology, PI aer Official Description
piClim-aer LOI61-LR-AER-piclim-AER-vF 2 Atm+Aer 30 years Fixed SST ERF PI sst, ice climatology, PD aer Official Description
NameSim-NameTierMin. ConfigPeriodKindNotes Link Parent Sim.Uploaded
piClim-2xDust LOI61-LR-AER-piclim-2xDUST-v2 2 Atm+Aer 30 years Fixed SST ERF PI-sst, PI forcing, 2x dust emission Official Description
piClim-2xSS LOI61-LR-AER-piclim-2xSS-v2 2 Atm+Aer 30 years Fixed SST ERF PI-sst, PI forcing, 2x ss emission Official Description
NameSim-NameTierMin. ConfigPeriodKindNotes Link Parent Sim.Uploaded
piClim-2xDMS 3 Atm+Aer 30 years Fixed SST ERF PI-sst, PI forcing, 2x DMS emission Official Description
piClim-BC LOI61-LR-AER-piClim-BC-vF 2 Atm+Aer 30 years Fixed SST ERF PI-sst, PI forcing, 2014 BC emission Official Description
piClim-SO2 LOI61-LR-AER-piClim-SO2-vF 3 Atm+Aer 30 years Fixed SST ERF PI-sst, PI forcing, 2014 SO2 emission Official Description
piClim-OC LOI61-LR-AER-piClim-OC-vF 3 Atm+Aer 30 years Fixed SST ERF PI-sst, PI forcing, 2014 OC emission Official Description
piClim-NH3 LOI61-LR-AER-piClim-NH3-vF 3 Atm+Aer 30 years Fixed SST ERF PI-sst, PI forcing, 2014 NH3 emission Official Description
piClim-NOx 3 Atm+Aer 30 years Fixed SST ERF PI-sst, PI forcing, 2014 NOx emission Official Description
piClim-NTCF 1 Atm+Aer 30 years Fixed SST ERF PI-sst, PI forcing, 2014 NTCF emission Official Description
NameSim-NameTierMin. ConfigPeriodKindNotes Link Parent Sim.Uploaded
ssp370sst 1 Atm+Aer+Ocean 40+46 years SSTs prescribed from ssp370 Forcings from SSP370. Already prepated at IRENE Official Description
ssp370sst-lowAER 1 Atm+Aer+Ocean 40+46 years SSTs prescribed from ssp370 Forcings from SSP370. Prepare low-aerosols Official Description
ssp370sst-lowBC 1 Atm+Aer+Ocean 40+46 years SSTs prescribed from ssp370 Forcings from SSP370. Prepare low-bc Official Description

Notes:

  • piClim-NOx discarted as is more focused on interactive chemistry.
  • piClim-NTCF discarted as it is similar to piClim-aer with prescribed ozone fields.

2. Ping files

INFO

  • send email to Arnaud (2020/04/30)
  • Arnaud answer
    Hi Anne and Ramiro,
    I have generated xmls files for piClim-control experiment (30 years from 1850 to 1879) because they are different from piControl experiment.
    Could you test them on 1year simulation (before launching 30 years) ? Let me know if it is ok for you. Once you will have confirmed it is ok,
    I will generate xmls files for other experiments.
    Cheers,
    Arnaud
    

    Ramiro (It has been run a test for 1 year for pi-control-AER (with ocean coupled) and the piClim-Control with forced ocean SST and ICE).

Path is : IGCM/CMIP6/IPSLCM6.1.11-LR/IPSL-CM6A-LR-INCA/piClim-control


Simulation bug with this error

 A grid must be defined for field 'CMIP6_rlutcsaf'

--> to do : understand this problem and correct it. (on next monday)
20200504 : correction done, the lmdz ping files was not the good one. New revision 5077. Now the simulation run for 1 day, I will test a longer run (1 year) to check post-treatment

3. Input files for forced model

SST/ICE

 Il me semble que pour être cohérent avec la non-réalisation d'un DECK, il doit prendre les SST du piControl officiel.
 Que dit le protocole pour ces simulations à SST fixées ? SST observées ou SST du piControl ?

translation

to be coherent with the fact we not rerun a deck, we need to use SST from the offical picontrol simulation.
Before to made this choice we need to check the protocol for fixed sst ? observed or picontrol sst ? 


Ramiro
TODO: verify protocol to know if we use sst from obsevation or from picontrol run
  • The protocol indicates that: Fixed SST ERF simulation. Use pre-industrial climatological average SST and sea-ice distributions.
  • The official paper describing AerChemMIP indicates:

The control simulation for these experiments will use 1850concentrations of WMGHGs and emissions of NTCFs, run for 30 years in atmosphere-only mode with SSTs and sea ice prescribed as a (monthly varying) climatology taken from 30 years of the pre-industrial control (experiment piClim-control; see Table 6) following the Radiative Forcing Model Intercomparison Project (RFMIP) specification (Pincus et al., 2016).

We have then to use the piClim-control

Anne
TODO: ask Arnaud path for the official ipslcm6 picontrol simulation. --> path send by email 20200504
2020504 : Arnaud

J'ai fait les xmls pour 30 ans de 1850 à 1879 mais vous pouvez prendre une autre periode de 30 ans que celle-là si vous le souhaitez...à la fois par rapport au protocole demandé mais peut etre aussi par rapport à la periode de 30 ans du picontrol de laquelle vous voulez extraire les sst de forcage (peut etre que certains 30 ans sont "mieux" que d'autres"...)...

Translation :

I did xmls files for 30 years from 1850 to 1879, but you can use an other 30 years periods than this one if the protocol ask it, or if you prefer an other period from the picontrol simulation

LIMIT.nc

We will run a leap simulation, with 365 and 366 years. To switch between one limit file to another we use SmoothFile part

# For leap years, copy ELC-144x142x79-leap_clim_limit.nc over ELC-144x142x79_clim_limit.nc file
# As ELC-144x142x79-leap_clim_limit.nc is also copied at each (re)submission, for 1850-1851 copy again ELC-144x142x79_clim_limit.nc
# Copy ELC-144x142x79_clim_limit.nc again for year 1900, which is Not bissextile (it does not divide by 400)
# Submit Job with PeriodNb=2 to reach 1852, the first bissextile year ; than change PeriodNb=16 (multiple of 4) for next resubmissions
[SmoothFiles]
List=   (${R_IN}/ATM/LIMIT/CMIP6/CM61-LR-pi-03/interpol/ELC-144x142x79-leap_clim_limit.nc, limit.nc,  3:4:)
#        (${R_IN}/ATM/LIMIT/CMIP6/CM61-LR-pi-03/interpol/ELC-144x142x79_clim_limit.nc, limit.nc,  1:1:2),\
#        (${R_IN}/ATM/LIMIT/CMIP6/CM61-LR-pi-03/interpol/ELC-144x142x79_clim_limit.nc, limit.nc,  51:1:51),\
#        (${R_IN}/ATM/LIMIT/CMIP6/CM61-LR-pi-03/interpol/ELC-144x142x79_clim_limit.nc, limit.nc,  161:1:162)

See section 2.2.4 here

  • 20200505 : Anne launch a simulation to test it.

AER pi/pd

pi / pd
Ramiro do you have files for these two inputs files ?

The links I have added to the table indicates the input needed by each simulation. piClim-control and piClim-aer. For piClim-control we need 1850 forcings, for piClim-aer the forcings are the same but aerosols emissions and their precursors should be for 2014. Below it is explained in detail.

4. Experiment directory

Add a new experiment directory for forced model : first commit

4.1 Questions to solve

  • which ModelName in config.card ?
  • which TagName in config.card ?

--> the answer to the ping files give some clues. We need to take same parameter than for coupled model
2020/05/01 : make modification in experiment directory and change name of this directory to be coherent with the type of experiment : piclim-control instead of picontrol see here

IMPORTANT
Do we have to follow any rule for ModelName and TagName in the config.card ?? --> YES it's depends of CMIP6 protocole and xml files path

5a. Before launch a simulation

  • official ipsl check https://forge.ipsl.jussieu.fr/igcmg/wiki/IPSLCM6/IPSL-CM6A-LR#Checklist
  • add od550 variables in lmdz output : modify the output level for od550 variables in file modeles/LMDZ/DefLists/file_def_histmth_lmdz.xml Below the changes for od550 -> where XXXX is from ASBCM, ASPOMM ... to CINO3M.
    -                <field field_ref="od550_XXXX" level="7" />
    +                <field field_ref="od550_XXXX" level="1" />
    

5b. After launch a simulation

  1. Run 2 years and use check_CMIP6.sh script
  2. Send results to Anne and Arnaud (this step has the approval for several piClim-control -> ping files are working fine)
  3. After approval register the simulation at List simulations
  4. The run the full simulation (check about the Smooth files setting)
  5. Run the check_CMIP6.sh script for full simulation
  6. Run the batch_prePARE_CMIP6.sh for full simulation
  7. Report the results of the scripts => show at tables of Checks at Section 7
  8. Update the document List simulations

6. History

Date Person Action Changes Topic
2019/04/30 Ramiro Docs and internal web AerChemMIP Tables simulations to run AerChemMIP-Process
2019/07/15 Ramiro Code Python to create ping files Revised and documented ping AER and CHEM
2019/09/15 Didier Peer-Review, check correct ping files Mostly CHEM on NHMC and AER ping files
2019/10/15 Ramiro Tunning and equilibration of model Changed cloud parameters EQUILIBRATION
2020/04/30 Anne Feedback email about ping files ping files
2020/05/01 Ramiro Test of 1 year config. coupled
2020/05/01 Anne New experiment directory Added LMDZORINCA EXPERIMENT
2020/05/01 Anne Solved inca ping file issue ping files
2020/05/01 Anne Added inca dr2xml ping files
2020/05/01 Anne Investigated about config.card config.card
2020/05/01 Ramiro Check protocol about SST-PI We have use picontrol (>=30yr) ping files
2020/05/03 Ramiro Update wiki with official links documentation
2020/05/04 Anne Solved issue CMIP6_rlutcsaf ping files
2020/05/04 Arnaud Email about xml files 1850-1879 Possible to extend them ping files
2020/05/04 Ramiro 1850-1879 fits the requirements No extend needed ping files
2020/05/05 Ramiro Added all needed forcing files Added to wiki documentation
2020/05/05 Ramiro Checked limit.nc from piContorl It is compatible with AerChem? limit.nc
2020/05/05 Ramiro Change at dustsource.f90 Added scaling factor file x2DUST exp
2020/05/05 Ramiro Prepated 4 experiments of piClim control, aer, 2xDUST, 2xS RUNS
2020/05/05 Ramiro Added table with document piClim control, aer, 2xDUST, 2xS DOCUMENTATION
2020/05/05 Anne Solved issue with leap years New scheme in lmdz.card limit.nc Calendar
2020/05/05 Anne Simulation to test patch limit.nc Calendar
2020/05/05 Ramiro Run tests 4 experiments piClim control, aer, 2xDUST, 2xS RUNNING-TEST
2020/05/07 Anne Checked LMDZ def_histmth_lmdz file_def_histmth_lmdz XML files LMDZ
2020/05/07 Ramiro Added file_def_histmth_lmdz.xml 20200507 Anne and others more XML files LMDZ
2020/05/07 Ramiro Recompiled to have AMD-ROME IRENE
2020/05/07 Ramiro Tested 2xDUST and 2xSS emissions Approx factor 2x RUNNING-TEST
2020/05/07 Ramiro Run 4 experiments piClim control, aer, 2xDUST, 2xS RUNNING
2020/05/11 Ramiro STOP 4 experiments piClim control, aer, 2xDUST, 2xS STOPPED
2020/05/13 Anne Commit new code for DUST EXp 2xDUST SVN [925] [5093]
2020/05/13 Anne remove Emi_No from output files  All experiments SVN [926]
2020/05/26 Ramiro prepared files piClim-BC piClim-OC piClim-BC, piClim-OC forcing files. Script
2020/05/28 Ramiro Launch set of simulations piClim- 2xdust,2xss,aer RUNNING
2020/06/03 Ramiro Update list of simulations piClim- 2xdust,2xss,aer DOCUMENTATION
2020/06/03 Ramiro Added section 5b of this wiki info todo after lauch sim. DOCUMENTATION
2020/06/04 Ramiro Prepared piClim-NH3 and piClim-SO2 piClim-NH3, piClim-SO2 forcing files. Script
2020/06/04 Ramiro Run 2years of piClim-NH3, piClim-SO2 piClim-NH3, piClim-SO2 RUNNING
2020/06/05 Ramiro Run 30 yr runs piClim-{NO3,SO2,OC,BC} RUNNING
2020/06/05 Ramiro STOP runs to discuss test of OA piClim-{NO3,SO2,OC,BC} Tests
2020/06/05 Ramiro Runs tests of piClim-OC Saving MSA and/or Emi_alt Checks
2020/06/06 Ramiro Added BLOCK ISSUE in red BLOCK ISSUE DOCUMENTATION
2020/06/07 Ramiro 1 year check for piClim-AER TEST-SIMULATION CHECKS
2020/06/10 Ramiro Added changes to INCA to solve problem emioa, emibc INCA source code code change
2020/06/10 Ramiro Run 1 month to check save of Emi_alt and Emi_alt_su INCA source code TEST
2020/06/10 Ramiro 1 year to full check patch to emioa and emibc INCA source code TEST
2020/06/28 Ramiro Added double check with AeroCOM 1850 and 2014 TEST-SIMULATION CHECKS
2020/06/28 Ramiro Commented the blocking issue WIKI DOCUMENTATION


7. IPSLCM6-AER (CHECK of simulations)

Quality-Control The scripts used for checks are also here to ensure reproducibility: check-30yr step and prePARE step

CHECKS of v2 simulations

This set of simulations is tested and runs are right but the emioa and emibc are both not correctly saved

Name Sim-Name Check Files global values (vs AeroCOM) 30 yr Check-Files PrePARE output Comment
piClim-control LOI61-LR-AER-piclim-Control-v2 Emi-Dep Not to upload
piClim-aer LOI61-LR-AER-piclim-AER-v2 Emi-Dep Not to upload
piClim-2xDust LOI61-LR-AER-piclim-2xDUST-v2 Emi-Dep check-30yr prePARE Replace emioa and emibc by LOI61-LR-AER-piClim-NH3-vF
piClim-2xSS LOI61-LR-AER-piclim-2xSS-v2 Emi-Dep check-30yr prePARE Replace emioa and emibc by LOI61-LR-AER-piClim-NH3-vF
CHECKS of vF simulations

This set of simulation is tested and with emioa and emibc correctly saved

Name Sim-Name Check Files global values (vs AeroCOM) 30 yr Check-Files PrePARE output Comment
piClim-BC LOI61-LR-AER-piClim-BC-vF Emi-Dep check-30yr prePARE Ready for submission
piClim-SO2 LOI61-LR-AER-piClim-SO2-vF Emi-Dep check-30yr prePARE Ready for submission
piClim-OC LOI61-LR-AER-piClim-OC-vF Emi-Dep check-30yr prePARE Ready for submission
piClim-NH3 LOI61-LR-AER-piClim-NH3-vF Emi-Dep check-30yr prePARE Ready for submission
piClim-control LOI61-LR-AER-piClim-Control-vF Emi-Dep check-30yr prePARE Ready for submission
piClim-aer LOI61-LR-AER-piClim-AER-vF Emi-Dep check-30yr prePARE Ready for submission
piClim-2xDMS LOI61-LR-AER-piClim-2xDMS-vF 2 years ok Running

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