[219] | 1 | #include "nc4_data_input.hpp" |
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| 2 | |
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[599] | 3 | #include "context.hpp" |
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| 4 | #include "context_server.hpp" |
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[775] | 5 | #include "context_client.hpp" |
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| 6 | #include "domain.hpp" |
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| 7 | #include "axis.hpp" |
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[967] | 8 | #include "scalar.hpp" |
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[599] | 9 | |
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[335] | 10 | namespace xios |
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[219] | 11 | { |
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[802] | 12 | CNc4DataInput::CNc4DataInput(const StdString& filename, MPI_Comm comm_file, bool multifile, bool isCollective /*= true*/, const StdString& timeCounterName /*= "time_counter"*/) |
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[599] | 13 | : SuperClass() |
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[802] | 14 | , SuperClassWriter(filename, &comm_file, multifile, timeCounterName) |
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[599] | 15 | , comm_file(comm_file) |
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| 16 | , filename(filename) |
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| 17 | , isCollective(isCollective) |
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[775] | 18 | , readMetaDataDomains_(), readValueDomains_() |
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| 19 | , readMetaDataAxis_(), readValueAxis_() |
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[967] | 20 | , readMetaDataScalar_(), readValueScalar_() |
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[599] | 21 | { |
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| 22 | SuperClass::type = multifile ? MULTI_FILE : ONE_FILE; |
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| 23 | } |
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[219] | 24 | |
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[599] | 25 | CNc4DataInput::~CNc4DataInput(void) |
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| 26 | { /* Nothing more to do */ } |
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[219] | 27 | |
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[599] | 28 | StdSize CNc4DataInput::getFieldNbRecords_(CField* field) |
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| 29 | { |
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[770] | 30 | StdString fieldId = field->getFieldOutputName(); |
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[599] | 31 | |
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| 32 | if (SuperClassWriter::isTemporal(fieldId)) |
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| 33 | { |
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[811] | 34 | // return SuperClassWriter::getDimensions(&fieldId)[SuperClassWriter::getUnlimitedDimensionName()]; |
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| 35 | return SuperClassWriter::getDimensions(&fieldId)[SuperClassWriter::getTimeCounterName()]; |
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[599] | 36 | } |
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| 37 | |
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| 38 | return 1; |
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| 39 | } |
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| 40 | |
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| 41 | void CNc4DataInput::readFieldData_(CField* field) |
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| 42 | { |
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| 43 | CContext* context = CContext::getCurrent(); |
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| 44 | CContextServer* server = context->server; |
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| 45 | |
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| 46 | CGrid* grid = field->grid; |
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| 47 | |
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| 48 | if (!grid->doGridHaveDataToWrite()) |
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| 49 | if (SuperClass::type==MULTI_FILE || !isCollective) return; |
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| 50 | |
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[770] | 51 | StdString fieldId = field->getFieldOutputName(); |
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[599] | 52 | |
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| 53 | CArray<double,1> fieldData(grid->getWrittenDataSize()); |
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| 54 | if (!field->default_value.isEmpty()) fieldData = field->default_value; |
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| 55 | |
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| 56 | switch (SuperClass::type) |
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| 57 | { |
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| 58 | case MULTI_FILE: |
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[850] | 59 | SuperClassWriter::getData(fieldData, fieldId, isCollective, (field->getNStep() - 1)%field->nstepMax ); |
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[599] | 60 | break; |
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| 61 | case ONE_FILE: |
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| 62 | { |
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[765] | 63 | /* |
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[599] | 64 | std::vector<int> nZoomBeginGlobal = grid->getDistributionServer()->getZoomBeginGlobal(); |
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| 65 | std::vector<int> nZoomBeginServer = grid->getDistributionServer()->getZoomBeginServer(); |
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| 66 | std::vector<int> nZoomSizeServer = grid->getDistributionServer()->getZoomSizeServer(); |
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| 67 | |
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| 68 | int ssize = nZoomBeginGlobal.size(); |
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| 69 | |
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| 70 | std::vector<StdSize> start(ssize); |
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| 71 | std::vector<StdSize> count(ssize); |
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| 72 | |
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| 73 | for (int i = 0; i < ssize; ++i) |
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| 74 | { |
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| 75 | start[i] = nZoomBeginServer[ssize - i - 1] - nZoomBeginGlobal[ssize - i - 1]; |
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| 76 | count[i] = nZoomSizeServer[ssize - i - 1]; |
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| 77 | } |
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[765] | 78 | */ |
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[599] | 79 | |
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[765] | 80 | std::vector<int> nZoomBeginGlobal = grid->getDistributionServer()->getZoomBeginGlobal(); |
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| 81 | std::vector<int> nZoomBeginServer = grid->getDistributionServer()->getZoomBeginServer(); |
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| 82 | std::vector<int> nZoomSizeServer = grid->getDistributionServer()->getZoomSizeServer(); |
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| 83 | |
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| 84 | std::vector<StdSize> start, count; |
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| 85 | |
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[887] | 86 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
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[765] | 87 | std::vector<StdString> domainList = grid->getDomainList(); |
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| 88 | std::vector<StdString> axisList = grid->getAxisList(); |
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| 89 | int numElement = axisDomainOrder.numElements(); |
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| 90 | int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
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| 91 | int idx = nZoomBeginGlobal.size() - 1; |
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| 92 | |
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| 93 | start.reserve(nZoomBeginGlobal.size()); |
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| 94 | count.reserve(nZoomBeginGlobal.size()); |
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| 95 | |
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| 96 | for (int i = numElement - 1; i >= 0; --i) |
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| 97 | { |
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[887] | 98 | if (2 == axisDomainOrder(i)) |
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[765] | 99 | { |
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| 100 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
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| 101 | if ((domain->type) != CDomain::type_attr::unstructured) |
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| 102 | { |
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| 103 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
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| 104 | count.push_back(nZoomSizeServer[idx]); |
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| 105 | } |
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| 106 | --idx ; |
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| 107 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
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| 108 | count.push_back(nZoomSizeServer[idx]); |
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| 109 | --idx ; |
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| 110 | --idxDomain; |
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| 111 | } |
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[887] | 112 | else if (1 == axisDomainOrder(i)) |
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[765] | 113 | { |
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| 114 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
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| 115 | count.push_back(nZoomSizeServer[idx]); |
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| 116 | --idx; |
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[967] | 117 | } |
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| 118 | else |
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| 119 | { |
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| 120 | if (1 == axisDomainOrder.numElements()) |
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| 121 | { |
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| 122 | start.push_back(0); |
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| 123 | count.push_back(1); |
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| 124 | } |
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| 125 | --idx; |
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| 126 | } |
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[765] | 127 | } |
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[777] | 128 | |
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[850] | 129 | SuperClassWriter::getData(fieldData, fieldId, isCollective, (field->getNStep() - 1)%field->nstepMax, &start, &count); |
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[599] | 130 | break; |
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| 131 | } |
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| 132 | } |
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| 133 | |
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| 134 | field->inputField(fieldData); |
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| 135 | |
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| 136 | if (!field->scale_factor.isEmpty() || !field->add_offset.isEmpty()) |
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| 137 | { |
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| 138 | double scaleFactor = 1.0, addOffset = 0.0; |
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| 139 | if (!field->scale_factor.isEmpty()) scaleFactor = field->scale_factor; |
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| 140 | if (!field->add_offset.isEmpty()) addOffset = field->add_offset; |
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| 141 | field->invertScaleFactorAddOffset(scaleFactor, addOffset); |
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| 142 | } |
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| 143 | } |
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| 144 | |
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[775] | 145 | void CNc4DataInput::readFieldAttributes_(CField* field, bool readAttributeValues) |
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| 146 | { |
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[777] | 147 | StdString fieldId = field->getFieldOutputName(); |
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[775] | 148 | |
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| 149 | CGrid* grid = field->grid; |
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| 150 | |
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| 151 | std::vector<CDomain*> domainP = grid->getDomains(); |
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| 152 | std::vector<CAxis*> axisP = grid->getAxis(); |
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[967] | 153 | std::vector<CScalar*> scalarP = grid->getScalars(); |
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[775] | 154 | int gridDim = domainP.size() * 2 + axisP.size(); |
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| 155 | |
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[967] | 156 | // Nothing to do with scalar without timestep |
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| 157 | if ((0 == gridDim) && (!SuperClassWriter::isTemporal(fieldId))) |
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| 158 | return; |
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| 159 | |
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[775] | 160 | // Verify the compatibility of dimension of declared grid and real grid in file |
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| 161 | int realGridDim = 1; |
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[783] | 162 | bool isUnstructuredGrid = SuperClassWriter::isUnstructured(fieldId); |
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[775] | 163 | std::map<StdString, StdSize> dimSizeMap = SuperClassWriter::getDimensions(&fieldId); |
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[807] | 164 | std::list<StdString> dimList = SuperClassWriter::getDimensionsList(&fieldId); |
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[825] | 165 | |
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[775] | 166 | realGridDim = SuperClassWriter::isTemporal(fieldId) ? dimSizeMap.size() - 1 : dimSizeMap.size(); |
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[783] | 167 | if (isUnstructuredGrid) ++realGridDim; |
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[775] | 168 | |
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| 169 | if (gridDim != realGridDim) |
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| 170 | ERROR("CNc4DataInput::readFieldAttributes_(CField* field, bool readAttributeValues)", |
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| 171 | << "Field '" << fieldId << "' has incorrect dimension " << std::endl |
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| 172 | << "Verify dimension of grid defined by 'grid_ref' or 'domain_ref'/'axis_ref' and dimension of grid in read file."); |
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| 173 | |
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| 174 | // Remove unlimited dimension from the map, we dont need it anymore |
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[825] | 175 | if (SuperClassWriter::isTemporal(fieldId)) |
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[807] | 176 | { |
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| 177 | dimSizeMap.erase(SuperClassWriter::getUnlimitedDimensionName()); |
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| 178 | dimList.pop_front() ; // assume time dimension is first |
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| 179 | } |
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[825] | 180 | |
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[783] | 181 | std::list<std::pair<StdString, StdSize> > listDimSize; |
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[807] | 182 | /* |
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[783] | 183 | for (std::map<StdString, StdSize>::const_iterator itMap = dimSizeMap.begin(); itMap != dimSizeMap.end(); ++itMap) |
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| 184 | listDimSize.push_front(*itMap); |
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[807] | 185 | */ |
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[1434] | 186 | |
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[1479] | 187 | // if (!SuperClassWriter::isRectilinear(fieldId)) |
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| 188 | if (true) |
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[1430] | 189 | { |
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[1434] | 190 | for (std::list<StdString>::const_iterator it = dimList.begin(); it != dimList.end(); ++it) |
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[1430] | 191 | listDimSize.push_front(*dimSizeMap.find(*it)); |
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| 192 | } |
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[1434] | 193 | else |
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| 194 | { |
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| 195 | std::list<StdString> coords = SuperClassWriter::getCoordinatesIdList(fieldId); |
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| 196 | std::list<StdString>::const_iterator itCoord = coords.begin(); |
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| 197 | for (; itCoord != coords.end(); itCoord++) |
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| 198 | { |
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| 199 | const StdString& coord = *itCoord; |
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| 200 | if (SuperClassWriter::hasVariable(coord) && !SuperClassWriter::isTemporal(coord)) |
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| 201 | { |
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| 202 | std::map<StdString, StdSize> dimsTmp = SuperClassWriter::getDimensions(&coord); |
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| 203 | StdString dimNameTmp = dimsTmp.begin()->first; |
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| 204 | StdSize dimSizeTmp = dimsTmp.begin()->second; |
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| 205 | listDimSize.push_front(make_pair(coord, dimSizeTmp)); |
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| 206 | dimSizeMap.erase(dimNameTmp); |
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| 207 | dimList.remove(dimNameTmp); |
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| 208 | } |
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| 209 | } |
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| 210 | for (std::list<StdString>::const_iterator it = dimList.begin(); it != dimList.end(); ++it) |
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| 211 | listDimSize.push_front(*dimSizeMap.find(*it)); |
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| 212 | } |
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[1430] | 213 | |
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[775] | 214 | // Now process domain and axis |
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[887] | 215 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
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[967] | 216 | int numElement = domainP.size() + axisP.size() + scalarP.size(); |
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[775] | 217 | int elementPosition = 0; |
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[967] | 218 | int idxDomain = 0, idxAxis = 0, idxScalar = 0; |
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[775] | 219 | |
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| 220 | std::pair<std::set<StdString>::iterator,bool> it; |
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| 221 | for (int i = 0; i < numElement; ++i) |
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| 222 | { |
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[887] | 223 | if(2 == axisDomainOrder(i)) |
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[775] | 224 | { |
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| 225 | if (readAttributeValues) |
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| 226 | { |
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| 227 | it = readValueDomains_.insert(domainP[idxDomain]->getId()); |
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[783] | 228 | if (it.second) readDomainAttributeValueFromFile(domainP[idxDomain], listDimSize, elementPosition, fieldId); |
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[775] | 229 | } |
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| 230 | else |
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| 231 | { |
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| 232 | it = readMetaDataDomains_.insert(domainP[idxDomain]->getId()); |
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[783] | 233 | if (it.second) readDomainAttributesFromFile(domainP[idxDomain], listDimSize, elementPosition, fieldId); |
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[775] | 234 | } |
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| 235 | ++idxDomain; |
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[783] | 236 | if (isUnstructuredGrid) ++elementPosition; |
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| 237 | else elementPosition += 2; |
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[775] | 238 | } |
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[887] | 239 | else if (1 == axisDomainOrder(i)) |
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[775] | 240 | { |
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| 241 | if (readAttributeValues) |
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| 242 | { |
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| 243 | it = readValueAxis_.insert(axisP[idxAxis]->getId()); |
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[783] | 244 | if (it.second) readAxisAttributeValueFromFile(axisP[idxAxis], listDimSize, elementPosition, fieldId); |
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[775] | 245 | } |
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| 246 | else |
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| 247 | { |
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| 248 | it = readMetaDataAxis_.insert(axisP[idxAxis]->getId()); |
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[783] | 249 | if (it.second) readAxisAttributesFromFile(axisP[idxAxis], listDimSize, elementPosition, fieldId); |
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[775] | 250 | } |
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| 251 | ++idxAxis; |
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| 252 | ++elementPosition; |
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| 253 | } |
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[967] | 254 | else |
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| 255 | { |
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| 256 | if (readAttributeValues) |
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| 257 | { |
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| 258 | it = readValueScalar_.insert(scalarP[idxScalar]->getId()); |
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| 259 | if (it.second) readScalarAttributeValueFromFile(scalarP[idxScalar], listDimSize, elementPosition, fieldId); |
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| 260 | } |
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| 261 | else |
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| 262 | { |
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| 263 | it = readMetaDataScalar_.insert(scalarP[idxScalar]->getId()); |
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| 264 | if (it.second) readScalarAttributesFromFile(scalarP[idxScalar], listDimSize, elementPosition, fieldId); |
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| 265 | } |
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| 266 | ++idxScalar; |
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| 267 | ++elementPosition; |
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| 268 | } |
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[775] | 269 | } |
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| 270 | } |
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| 271 | |
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| 272 | /*! |
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| 273 | Read attributes of a domain from a file |
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| 274 | \param [in] domain domain whose attributes are read from the file |
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| 275 | \param [in] dimSizeMap Dimensions and and their corresponding names and size read from file |
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| 276 | \param [in] emelentPosition position of domain in grid |
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[782] | 277 | \param [in] fieldId id (or name) associated with the grid |
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[775] | 278 | */ |
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[783] | 279 | void CNc4DataInput::readDomainAttributeValueFromFile(CDomain* domain, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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[775] | 280 | int elementPosition, const StdString& fieldId) |
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| 281 | { |
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| 282 | // There are some optional attributes of a domain to retrieve from file // + lon lat? |
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[783] | 283 | std::list<std::pair<StdString, StdSize> >::const_iterator itMapNi = dimSizeMap.begin(), itMapNj, |
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| 284 | iteMap = dimSizeMap.end(); |
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[775] | 285 | |
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[783] | 286 | for (int i = 0; i < elementPosition; ++i, ++itMapNi) {} |
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| 287 | itMapNj = itMapNi; ++itMapNj; |
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[775] | 288 | |
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[1158] | 289 | if ((CDomain::type_attr::rectilinear == domain->type)) |
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[775] | 290 | { |
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[1419] | 291 | // Ok, try to read some attributes such as longitude and latitude |
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[825] | 292 | bool hasLat = SuperClassWriter::hasVariable(itMapNj->first); |
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| 293 | if (hasLat) |
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| 294 | { |
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| 295 | domain->latvalue_rectilinear_read_from_file.resize(itMapNj->second); |
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| 296 | std::vector<StdSize> nBeginLat(1, 0), nSizeLat(1, itMapNj->second); |
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| 297 | readFieldVariableValue(domain->latvalue_rectilinear_read_from_file, itMapNj->first, nBeginLat, nSizeLat, true); |
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| 298 | } |
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[775] | 299 | |
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[825] | 300 | bool hasLon = SuperClassWriter::hasVariable(itMapNi->first); |
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| 301 | if (hasLon) |
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| 302 | { |
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| 303 | domain->lonvalue_rectilinear_read_from_file.resize(itMapNi->second); |
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| 304 | std::vector<StdSize> nBeginLon(1, 0), nSizeLon(1, itMapNi->second); |
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| 305 | readFieldVariableValue(domain->lonvalue_rectilinear_read_from_file, itMapNi->first, nBeginLon, nSizeLon, true); |
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[1158] | 306 | } |
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[775] | 307 | } |
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[1158] | 308 | else if ((CDomain::type_attr::curvilinear == domain->type)) |
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[783] | 309 | { |
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[1428] | 310 | // Make sure that if there is no local domain defined on a process, the process still reads just one value. |
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| 311 | int ni, nj, ibegin, jbegin; |
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| 312 | if (domain->ni == 0) |
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| 313 | { |
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| 314 | ni = 1; |
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| 315 | ibegin = 0; |
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| 316 | } |
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| 317 | else |
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| 318 | { |
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| 319 | ni = domain->ni; |
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| 320 | ibegin = domain->ibegin; |
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| 321 | } |
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| 322 | if (domain->nj == 0) |
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| 323 | { |
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| 324 | nj = 1; |
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| 325 | jbegin = 0; |
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| 326 | } |
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| 327 | else |
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| 328 | { |
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| 329 | nj = domain->nj; |
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| 330 | jbegin = domain->jbegin; |
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| 331 | } |
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| 332 | |
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[785] | 333 | std::vector<StdSize> nBeginLatLon(2), nSizeLatLon(2); |
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[1428] | 334 | nBeginLatLon[0] = jbegin; nBeginLatLon[1] = ibegin; |
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| 335 | nSizeLatLon[0] = nj; nSizeLatLon[1] = ni; |
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[783] | 336 | |
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| 337 | StdString latName = this->getLatCoordName(fieldId); |
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[1158] | 338 | if (SuperClassWriter::hasVariable(latName)) |
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[825] | 339 | { |
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[1428] | 340 | domain->latvalue_curvilinear_read_from_file.resize(ni, nj); |
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[1158] | 341 | readFieldVariableValue(domain->latvalue_curvilinear_read_from_file, latName, nBeginLatLon, nSizeLatLon); |
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[825] | 342 | } |
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[783] | 343 | StdString lonName = this->getLonCoordName(fieldId); |
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[1158] | 344 | if (SuperClassWriter::hasVariable(lonName)) |
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[825] | 345 | { |
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[1428] | 346 | domain->lonvalue_curvilinear_read_from_file.resize(ni, nj); |
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[1158] | 347 | readFieldVariableValue(domain->lonvalue_curvilinear_read_from_file, lonName, nBeginLatLon, nSizeLatLon); |
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[825] | 348 | } |
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[783] | 349 | |
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| 350 | StdString boundsLatName = this->getBoundsId(latName); |
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| 351 | StdString boundsLonName = this->getBoundsId(lonName); |
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| 352 | |
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[1447] | 353 | int nbVertex = 4; //this->getNbVertex(fieldId); |
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[1158] | 354 | if (!domain->nvertex.isEmpty() && (domain->nvertex != nbVertex)) |
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| 355 | { |
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| 356 | ERROR("void CNc4DataInput::readDomainAttributeValueFromFile(...)", |
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| 357 | << "The domain " << domain->getDomainOutputName() |
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| 358 | << " has nvertex read from file " << this->filename << " and nvertex provided from model" |
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| 359 | << " are not coherent. They should be the same." << std::endl |
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| 360 | << " nvertex read from file: "<< nbVertex |
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| 361 | << " nvertex from model: "<< domain->nvertex << std::endl); |
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| 362 | } |
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| 363 | |
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| 364 | if (SuperClassWriter::hasVariable(boundsLatName) || SuperClassWriter::hasVariable(boundsLonName)) |
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[825] | 365 | domain->nvertex.setValue(nbVertex); |
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[1201] | 366 | |
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[785] | 367 | std::vector<StdSize> nBeginBndsLatLon(3), nSizeBndsLatLon(3); |
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[1428] | 368 | nBeginBndsLatLon[0] = jbegin; nSizeBndsLatLon[0] = nj; |
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| 369 | nBeginBndsLatLon[1] = ibegin; nSizeBndsLatLon[1] = ni; |
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[785] | 370 | nBeginBndsLatLon[2] = 0; nSizeBndsLatLon[2] = nbVertex; |
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[783] | 371 | |
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[1158] | 372 | if (SuperClassWriter::hasVariable(boundsLatName)) |
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[825] | 373 | { |
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[1428] | 374 | domain->bounds_latvalue_curvilinear_read_from_file.resize(nbVertex, ni, nj); |
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[1158] | 375 | readFieldVariableValue(domain->bounds_latvalue_curvilinear_read_from_file, boundsLatName, nBeginBndsLatLon, nSizeBndsLatLon); |
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[825] | 376 | |
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| 377 | } |
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[1158] | 378 | if (SuperClassWriter::hasVariable(boundsLonName)) |
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[825] | 379 | { |
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[1428] | 380 | domain->bounds_lonvalue_curvilinear_read_from_file.resize(nbVertex, ni, nj); |
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[1158] | 381 | readFieldVariableValue(domain->bounds_lonvalue_curvilinear_read_from_file, boundsLonName, nBeginBndsLatLon, nSizeBndsLatLon); |
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| 382 | } |
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[783] | 383 | } |
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[825] | 384 | else if ((CDomain::type_attr::unstructured == domain->type))// || (this->isUnstructured(fieldId))) |
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[775] | 385 | { |
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[1428] | 386 | // Make sure that if there is no local domain defined on a process, the process still reads just one value. |
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| 387 | int ni, ibegin; |
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| 388 | if (domain->ni == 0) |
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| 389 | { |
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| 390 | ni = 1; |
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| 391 | ibegin = 0; |
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| 392 | } |
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| 393 | else |
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| 394 | { |
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| 395 | ni = domain->ni; |
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| 396 | ibegin = domain->ibegin; |
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| 397 | } |
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| 398 | |
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[785] | 399 | std::vector<StdSize> nBeginLatLon(1,0), nSizeLatLon(1,0); |
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[1428] | 400 | nBeginLatLon[0] = ibegin; |
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| 401 | nSizeLatLon[0] = ni; |
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[785] | 402 | |
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[782] | 403 | StdString latName = this->getLatCoordName(fieldId); |
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[1158] | 404 | if (SuperClassWriter::hasVariable(latName)) |
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[825] | 405 | { |
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[1428] | 406 | domain->latvalue_unstructured_read_from_file.resize(ni); |
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[1158] | 407 | readFieldVariableValue(domain->latvalue_unstructured_read_from_file, latName, nBeginLatLon, nSizeLatLon); |
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[825] | 408 | } |
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[785] | 409 | |
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[782] | 410 | StdString lonName = this->getLonCoordName(fieldId); |
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[825] | 411 | if (SuperClassWriter::hasVariable(lonName)) //(0 != lonName.compare("")) |
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| 412 | { |
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[1428] | 413 | domain->lonvalue_unstructured_read_from_file.resize(ni); |
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[1158] | 414 | readFieldVariableValue(domain->lonvalue_unstructured_read_from_file, lonName, nBeginLatLon, nSizeLatLon); |
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[825] | 415 | } |
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[782] | 416 | |
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| 417 | StdString boundsLatName = this->getBoundsId(latName); |
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| 418 | StdString boundsLonName = this->getBoundsId(lonName); |
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| 419 | |
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[783] | 420 | int nbVertex = this->getNbVertex(fieldId); |
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[1158] | 421 | if (!domain->nvertex.isEmpty() && (domain->nvertex != nbVertex)) |
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| 422 | { |
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| 423 | ERROR("void CNc4DataInput::readDomainAttributeValueFromFile(...)", |
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| 424 | << "The domain " << domain->getDomainOutputName() |
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| 425 | << " has nvertex read from file " << this->filename << " and nvertex provided from model" |
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| 426 | << " are not coherent. They should be the same." << std::endl |
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| 427 | << " nvertex read from file: "<< nbVertex |
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| 428 | << " nvertex from model: "<< domain->nvertex << std::endl); |
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| 429 | } |
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| 430 | |
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| 431 | if (SuperClassWriter::hasVariable(boundsLatName) || SuperClassWriter::hasVariable(boundsLonName)) |
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[825] | 432 | domain->nvertex.setValue(nbVertex); |
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| 433 | |
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[785] | 434 | std::vector<StdSize> nBeginBndsLatLon(2), nSizeBndsLatLon(2); |
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[1428] | 435 | nBeginBndsLatLon[0] = ibegin; nSizeBndsLatLon[0] = ni; |
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[1413] | 436 | nBeginBndsLatLon[1] = 0; nSizeBndsLatLon[1] = nbVertex; |
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[782] | 437 | |
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[1413] | 438 | if (SuperClassWriter::hasVariable(boundsLatName)) |
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[825] | 439 | { |
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[1158] | 440 | domain->bounds_latvalue_unstructured_read_from_file.resize(nSizeBndsLatLon[1], nSizeBndsLatLon[0]); |
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| 441 | readFieldVariableValue(domain->bounds_latvalue_unstructured_read_from_file, boundsLatName, nBeginBndsLatLon, nSizeBndsLatLon); |
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[825] | 442 | } |
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[785] | 443 | |
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[1158] | 444 | if (SuperClassWriter::hasVariable(boundsLonName)) |
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[825] | 445 | { |
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[1158] | 446 | domain->bounds_lonvalue_unstructured_read_from_file.resize(nSizeBndsLatLon[1], nSizeBndsLatLon[0]); |
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| 447 | readFieldVariableValue(domain->bounds_lonvalue_unstructured_read_from_file, boundsLonName, nBeginBndsLatLon, nSizeBndsLatLon); |
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| 448 | } |
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[775] | 449 | } |
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[1158] | 450 | domain->fillInLonLat(); |
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[775] | 451 | } |
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| 452 | |
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| 453 | /*! |
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[782] | 454 | Read attribute value of a domain from a file |
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[775] | 455 | \param [in] domain domain whose attributes are read from the file |
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| 456 | \param [in] dimSizeMap Dimensions and and their corresponding names and size read from file |
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| 457 | \param [in] emelentPosition position of domain in grid |
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[782] | 458 | \param [in] fieldId id (or name) associated with the grid |
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[775] | 459 | */ |
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[783] | 460 | void CNc4DataInput::readDomainAttributesFromFile(CDomain* domain, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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[775] | 461 | int elementPosition, const StdString& fieldId) |
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| 462 | { |
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| 463 | // There are some mandatory attributes of a domain to retrieve from file |
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| 464 | // + ni_glo, nj_glo |
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[783] | 465 | std::list<std::pair<StdString, StdSize> >::const_iterator itMapNi = dimSizeMap.begin(), itMapNj, |
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| 466 | iteMap = dimSizeMap.end(); |
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| 467 | for (int i = 0; i < elementPosition; ++i, ++itMapNi) {} |
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| 468 | itMapNj = itMapNi; ++itMapNj; |
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[775] | 469 | |
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[1479] | 470 | if (CDomain::type_attr::rectilinear == domain->type || CDomain::type_attr::curvilinear == domain->type || |
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| 471 | this->isRectilinear(fieldId) || this->isCurvilinear(fieldId)) |
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[775] | 472 | { |
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[1158] | 473 | if (!domain->nj_glo.isEmpty() && (domain->nj_glo != itMapNj->second)) |
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| 474 | { |
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| 475 | ERROR("void CNc4DataInput::readDomainAttributesFromFile(...)", |
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| 476 | << "The domain " << domain->getDomainOutputName() |
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| 477 | << " has nj_glo read from file " << this->filename << " and nj_glo provided from model" |
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| 478 | << " are not coherent. They should be the same." << std::endl |
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| 479 | << " nj_glo read from file: "<< itMapNj->second |
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| 480 | << " nj_glo from model: "<< domain->nj_glo << std::endl); |
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| 481 | } |
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[775] | 482 | domain->nj_glo.setValue(itMapNj->second); |
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[1158] | 483 | |
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| 484 | if (!domain->ni_glo.isEmpty() && (domain->ni_glo != itMapNi->second)) |
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| 485 | { |
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| 486 | ERROR("void CNc4DataInput::readDomainAttributesFromFile(...)", |
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| 487 | << "The domain " << domain->getDomainOutputName() |
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| 488 | << " has ni_glo read from file " << this->filename << " and ni_glo provided from model" |
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| 489 | << " are not coherent. They should be the same." << std::endl |
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| 490 | << " ni_glo read from file: "<< itMapNi->second |
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| 491 | << " ni_glo from model: "<< domain->ni_glo << std::endl); |
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| 492 | } |
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[783] | 493 | domain->ni_glo.setValue(itMapNi->second); |
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[775] | 494 | } |
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[1479] | 495 | else if (CDomain::type_attr::unstructured == domain->type|| this->isUnstructured(fieldId)) |
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[775] | 496 | { |
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[783] | 497 | domain->nj_glo.setValue(1); |
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[1158] | 498 | |
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| 499 | if (!domain->ni_glo.isEmpty() && (domain->ni_glo != itMapNi->second)) |
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| 500 | { |
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| 501 | ERROR("void CNc4DataInput::readDomainAttributesFromFile(...)", |
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| 502 | << "The domain " << domain->getDomainOutputName() |
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| 503 | << " has ni_glo read from file " << this->filename << " and ni_glo provided from model" |
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| 504 | << " are not coherent. They should be the same." << std::endl |
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| 505 | << " ni_glo read from file: "<< itMapNi->second |
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| 506 | << " ni_glo from model: "<< domain->ni_glo << std::endl); |
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| 507 | } |
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[783] | 508 | domain->ni_glo.setValue(itMapNi->second); |
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[775] | 509 | } |
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| 510 | } |
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| 511 | |
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| 512 | /*! |
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| 513 | Read attributes of an axis from a file |
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| 514 | \param [in] axis axis whose attributes are read from the file |
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| 515 | \param [in] dimSizeMap Dimensions and and their corresponding names and size read from file |
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| 516 | \param [in] emelentPosition position of axis in grid |
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[782] | 517 | \param [in] fieldId id (or name) associated with the grid |
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[775] | 518 | */ |
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[783] | 519 | void CNc4DataInput::readAxisAttributesFromFile(CAxis* axis, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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[775] | 520 | int elementPosition, const StdString& fieldId) |
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| 521 | { |
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[783] | 522 | std::list<std::pair<StdString, StdSize> >::const_iterator itMapN = dimSizeMap.begin(), |
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| 523 | iteMap = dimSizeMap.end(); |
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[775] | 524 | for (int i = 0; i < elementPosition; ++i, ++itMapN) {} |
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[1158] | 525 | |
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| 526 | if (!axis->n_glo.isEmpty() && (axis->n_glo != itMapN->second)) |
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| 527 | { |
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| 528 | ERROR("void CNc4DataInput::readAxisAttributesFromFile(...)", |
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| 529 | << "The axis " << axis->getAxisOutputName() |
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| 530 | << " has n_glo read from file " << this->filename << " and n_glo provided from model" |
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| 531 | << " are not coherent. They should be the same." << std::endl |
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| 532 | << " n_glo read from file: "<< itMapN->second |
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| 533 | << " n_glo from model: "<< axis->n_glo << std::endl); |
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| 534 | } |
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[775] | 535 | axis->n_glo.setValue(itMapN->second); |
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| 536 | } |
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| 537 | |
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| 538 | /*! |
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[782] | 539 | Read attribute value of an axis from a file |
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[775] | 540 | \param [in] axis axis whose attributes are read from the file |
---|
| 541 | \param [in] dimSizeMap Dimensions and and their corresponding names and size read from file |
---|
| 542 | \param [in] emelentPosition position of axis in grid |
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[782] | 543 | \param [in] fieldId id (or name) associated with the grid |
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[775] | 544 | */ |
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[783] | 545 | void CNc4DataInput::readAxisAttributeValueFromFile(CAxis* axis, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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[775] | 546 | int elementPosition, const StdString& fieldId) |
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| 547 | { |
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[783] | 548 | std::list<std::pair<StdString, StdSize> >::const_iterator itMapN = dimSizeMap.begin(), |
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| 549 | iteMap = dimSizeMap.end(); |
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[775] | 550 | for (int i = 0; i < elementPosition; ++i, ++itMapN) {} |
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| 551 | |
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| 552 | { // Read axis value |
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[1310] | 553 | bool hasValue = SuperClassWriter::hasVariable(itMapN->first); |
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| 554 | if (hasValue) |
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| 555 | { |
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| 556 | std::vector<StdSize> nBegin(1, 0), nSize(1, itMapN->second); |
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| 557 | CArray<double,1> readAxisValue(itMapN->second); |
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| 558 | readFieldVariableValue(readAxisValue, itMapN->first, nBegin, nSize, true); |
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| 559 | int begin = 0, n = itMapN->second; |
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| 560 | if (!axis->begin.isEmpty()) begin = axis->begin.getValue(); |
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| 561 | if (!axis->n.isEmpty()) n = axis->n.getValue(); |
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| 562 | axis->value.resize(n); |
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| 563 | for (int i = 0; i < n; ++i) axis->value(i) = readAxisValue(begin + i); |
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| 564 | } |
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[775] | 565 | } |
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| 566 | } |
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| 567 | |
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[967] | 568 | /*! |
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| 569 | Read attributes of a scalar from a file |
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| 570 | \param [in] scalar scalar whose attributes are read from the file |
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| 571 | \param [in] dimSizeMap Dimensions and and their corresponding names and size read from file |
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| 572 | \param [in] emelentPosition position of scalar in grid |
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| 573 | \param [in] fieldId id (or name) associated with the grid |
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| 574 | */ |
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| 575 | void CNc4DataInput::readScalarAttributesFromFile(CScalar* scalar, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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| 576 | int elementPosition, const StdString& fieldId) |
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| 577 | { |
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[1158] | 578 | /*Nothing to do */ |
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[967] | 579 | } |
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| 580 | |
---|
| 581 | /*! |
---|
| 582 | Read attribute value of an axis from a file |
---|
| 583 | \param [in] axis axis whose attributes are read from the file |
---|
| 584 | \param [in] dimSizeMap Dimensions and and their corresponding names and size read from file |
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| 585 | \param [in] emelentPosition position of axis in grid |
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| 586 | \param [in] fieldId id (or name) associated with the grid |
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| 587 | */ |
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| 588 | void CNc4DataInput::readScalarAttributeValueFromFile(CScalar* scalar, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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| 589 | int elementPosition, const StdString& fieldId) |
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| 590 | { |
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[1158] | 591 | /*Nothing to do */ |
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[967] | 592 | } |
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| 593 | |
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[599] | 594 | void CNc4DataInput::closeFile_(void) |
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| 595 | { |
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| 596 | SuperClassWriter::close(); |
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| 597 | } |
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[335] | 598 | } // namespace xios |
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