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source: XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_output.cpp @ 1279

Last change on this file since 1279 was 1266, checked in by ymipsl, 7 years ago

Add new axis attribute : formula, formula_term, formula_bounds, formula_term_bounds (string). It will be written as metadata in netcdf file.

YM

Property copyright set to
Software name : XIOS (Xml I/O Server)
http://forge.ipsl.jussieu.fr/ioserver
Creation date : January 2009
Licence : CeCCIL version2
see license file in root directory : Licence_CeCILL_V2-en.txt
or http://www.cecill.info/licences/Licence_CeCILL_V2-en.html
Holder : CEA/LSCE (Laboratoire des Sciences du CLimat et de l'Environnement)
CNRS/IPSL (Institut Pierre Simon Laplace)
Project Manager : Yann Meurdesoif
yann.meurdesoif@cea.fr
Property svn:executable set to *

File size: 126.1 KB

Line
1	#include "nc4_data_output.hpp"
2
3	#include <boost/lexical_cast.hpp>
4	#include "attribute_template.hpp"
5	#include "group_template.hpp"
6
7	#include "file.hpp"
8	#include "calendar.hpp"
9	#include "context.hpp"
10	#include "context_server.hpp"
11	#include "netCdfException.hpp"
12	#include "exception.hpp"
13	#include "timer.hpp"
14	#include "uuid.hpp"
15	namespace xios
16	{
17	/// ////////////////////// Dfinitions ////////////////////// ///
18	CNc4DataOutput::CNc4DataOutput
19	(CFile* file, const StdString & filename, bool exist)
20	: SuperClass()
21	, SuperClassWriter(filename, exist)
22	, filename(filename)
23	, file(file),hasTimeInstant(false),hasTimeCentered(false), timeCounterType(none)
24	{
25	SuperClass::type = MULTI_FILE;
26	}
27
28	CNc4DataOutput::CNc4DataOutput
29	(CFile* file, const StdString & filename, bool exist, bool useClassicFormat, bool useCFConvention,
30	MPI_Comm comm_file, bool multifile, bool isCollective, const StdString& timeCounterName)
31	: SuperClass()
32	, SuperClassWriter(filename, exist, useClassicFormat, useCFConvention, &comm_file, multifile, timeCounterName)
33	, comm_file(comm_file)
34	, filename(filename)
35	, isCollective(isCollective)
36	, file(file),hasTimeInstant(false),hasTimeCentered(false), timeCounterType(none)
37	{
38	SuperClass::type = (multifile) ? MULTI_FILE : ONE_FILE;
39	}
40
41	CNc4DataOutput::~CNc4DataOutput(void)
42	{ /* Ne rien faire de plus */ }
43
44	///--------------------------------------------------------------
45
46	const StdString & CNc4DataOutput::getFileName(void) const
47	{
48	return (this->filename);
49	}
50
51	//---------------------------------------------------------------
52
53	void CNc4DataOutput::writeDomain_(CDomain* domain)
54	{
55	domain->computeWrittenIndex();
56	domain->computeWrittenCompressedIndex(comm_file);
57
58	if (domain->type == CDomain::type_attr::unstructured)
59	{
60	if (SuperClassWriter::useCFConvention)
61	writeUnstructuredDomain(domain) ;
62	else
63	writeUnstructuredDomainUgrid(domain) ;
64	return ;
65	}
66
67	CContext* context = CContext::getCurrent() ;
68	CContextServer* server=context->server ;
69
70	if (domain->IsWritten(this->filename)) return;
71	domain->checkAttributes();
72
73	if (domain->isEmpty())
74	if (SuperClass::type==MULTI_FILE) return;
75
76	std::vector<StdString> dim0, dim1;
77	StdString domid = domain->getDomainOutputName();
78	StdString appendDomid = (singleDomain) ? "" : "_"+domid ;
79	if (isWrittenDomain(domid)) return ;
80	else setWrittenDomain(domid);
81
82	int nvertex = (domain->nvertex.isEmpty()) ? 0 : domain->nvertex;
83
84
85	StdString dimXid, dimYid ;
86
87	nc_type typePrec ;
88	if (domain->prec.isEmpty()) typePrec = NC_FLOAT ;
89	else if (domain->prec==4) typePrec = NC_FLOAT ;
90	else if (domain->prec==8) typePrec = NC_DOUBLE ;
91
92	bool isRegularDomain = (domain->type == CDomain::type_attr::rectilinear);
93	switch (domain->type)
94	{
95	case CDomain::type_attr::curvilinear :
96	dimXid = StdString("x").append(appendDomid);
97	dimYid = StdString("y").append(appendDomid);
98	break ;
99	case CDomain::type_attr::rectilinear :
100	dimXid = StdString("lon").append(appendDomid);
101	dimYid = StdString("lat").append(appendDomid);
102	break;
103	}
104
105	StdString dimVertId = StdString("nvertex").append(appendDomid);
106
107	string lonid,latid,bounds_lonid,bounds_latid ;
108	string areaId = "area" + appendDomid;
109	/*
110	StdString lonid_loc = (server->intraCommSize > 1)
111	? StdString("lon").append(appendDomid).append("_local")
112	: lonid;
113	StdString latid_loc = (server->intraCommSize > 1)
114	? StdString("lat").append(appendDomid).append("_local")
115	: latid;
116	*/
117
118	CArray<size_t, 1>& indexToWrite = domain->localIndexToWriteOnServer;
119	int nbWritten = indexToWrite.numElements();
120	CArray<double,1> writtenLat, writtenLon;
121	CArray<double,2> writtenBndsLat, writtenBndsLon;
122	CArray<double,1> writtenArea;
123
124	if (domain->hasLonLat)
125	{
126	writtenLat.resize(nbWritten);
127	writtenLon.resize(nbWritten);
128	for (int idx = 0; idx < nbWritten; ++idx)
129	{
130	writtenLat(idx) = domain->latvalue(indexToWrite(idx));
131	writtenLon(idx) = domain->lonvalue(indexToWrite(idx));
132	}
133
134
135	if (domain->hasBounds)
136	{
137	int nvertex = domain->nvertex, idx;
138	writtenBndsLat.resize(nvertex, nbWritten);
139	writtenBndsLon.resize(nvertex, nbWritten);
140	CArray<double,2>& boundslat = domain->bounds_latvalue;
141	CArray<double,2>& boundslon = domain->bounds_lonvalue;
142	for (idx = 0; idx < nbWritten; ++idx)
143	for (int nv = 0; nv < nvertex; ++nv)
144	{
145	writtenBndsLat(nv, idx) = boundslat(nv, int(indexToWrite(idx)));
146	writtenBndsLon(nv, idx) = boundslon(nv, int(indexToWrite(idx)));
147	}
148	}
149	}
150
151	if (domain->hasArea)
152	{
153	writtenArea.resize(nbWritten);
154	for (int idx = 0; idx < nbWritten; ++idx)
155	{
156	writtenArea(idx) = domain->areavalue(indexToWrite(idx));
157	}
158	}
159
160	try
161	{
162	switch (SuperClass::type)
163	{
164	case (MULTI_FILE) :
165	{
166	// if (domain->isEmpty()) return;
167
168	if (server->intraCommSize > 1)
169	{
170	// SuperClassWriter::addDimension(lonid, domain->zoom_ni.getValue());
171	// SuperClassWriter::addDimension(latid, domain->zoom_nj.getValue());
172	}
173
174	switch (domain->type)
175	{
176	case CDomain::type_attr::curvilinear :
177	dim0.push_back(dimYid); dim0.push_back(dimXid);
178	lonid = StdString("nav_lon").append(appendDomid);
179	latid = StdString("nav_lat").append(appendDomid);
180	break ;
181	case CDomain::type_attr::rectilinear :
182	lonid = StdString("lon").append(appendDomid);
183	latid = StdString("lat").append(appendDomid);
184	dim0.push_back(dimYid);
185	dim1.push_back(dimXid);
186	break;
187	}
188
189	bounds_lonid = StdString("bounds_lon").append(appendDomid);
190	bounds_latid = StdString("bounds_lat").append(appendDomid);
191
192	SuperClassWriter::addDimension(dimXid, domain->zoom_ni);
193	SuperClassWriter::addDimension(dimYid, domain->zoom_nj);
194
195	if (domain->hasBounds)
196	SuperClassWriter::addDimension(dimVertId, domain->nvertex);
197
198	if (server->intraCommSize > 1)
199	{
200	this->writeLocalAttributes(domain->zoom_ibegin,
201	domain->zoom_ni,
202	domain->zoom_jbegin,
203	domain->zoom_nj,
204	appendDomid);
205
206	if (singleDomain)
207	this->writeLocalAttributes_IOIPSL(dimXid, dimYid,
208	domain->zoom_ibegin,
209	domain->zoom_ni,
210	domain->zoom_jbegin,
211	domain->zoom_nj,
212	domain->ni_glo,domain->nj_glo,
213	server->intraCommRank,server->intraCommSize);
214	}
215
216	if (domain->hasLonLat)
217	{
218	switch (domain->type)
219	{
220	case CDomain::type_attr::curvilinear :
221	SuperClassWriter::addVariable(latid, typePrec, dim0);
222	SuperClassWriter::addVariable(lonid, typePrec, dim0);
223	break ;
224	case CDomain::type_attr::rectilinear :
225	SuperClassWriter::addVariable(latid, typePrec, dim0);
226	SuperClassWriter::addVariable(lonid, typePrec, dim1);
227	break ;
228	}
229
230	this->writeAxisAttributes(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid);
231	this->writeAxisAttributes(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid);
232
233	if (domain->hasBounds)
234	{
235	SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid);
236	SuperClassWriter::addAttribute("bounds", bounds_latid, &latid);
237
238	dim0.clear();
239	dim0.push_back(dimYid);
240	dim0.push_back(dimXid);
241	dim0.push_back(dimVertId);
242	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0);
243	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0);
244	}
245	}
246
247	dim0.clear();
248	dim0.push_back(dimYid);
249	dim0.push_back(dimXid);
250
251
252	// supress mask if (server->intraCommSize > 1)
253	// supress mask {
254	// supress mask SuperClassWriter::addVariable(maskid, NC_INT, dim0);
255	// supress mask
256	// supress mask this->writeMaskAttributes(maskid,
257	// supress mask domain->data_dim.getValue()/*,
258	// supress mask domain->data_ni.getValue(),
259	// supress mask domain->data_nj.getValue(),
260	// supress mask domain->data_ibegin.getValue(),
261	// supress mask domain->data_jbegin.getValue()*/);
262	// supress mask }
263
264	//SuperClassWriter::setDefaultValue(maskid, &dvm);
265
266	if (domain->hasArea)
267	{
268	SuperClassWriter::addVariable(areaId, typePrec, dim0);
269	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
270	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
271	}
272
273	SuperClassWriter::definition_end();
274
275	if (domain->hasLonLat)
276	{
277	switch (domain->type)
278	{
279	case CDomain::type_attr::curvilinear :
280	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0);
281	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0);
282	break;
283	case CDomain::type_attr::rectilinear :
284	CArray<double,1> lat = writtenLat(Range(fromStart,toEnd,domain->zoom_ni)) ;
285	SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0);
286	CArray<double,1> lon = writtenLon(Range(0,domain->zoom_ni-1)) ;
287	SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0);
288	break;
289	}
290
291	if (domain->hasBounds)
292	{
293	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0);
294	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0);
295	}
296	}
297
298	if (domain->hasArea)
299	{
300	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0);
301	}
302
303	SuperClassWriter::definition_start();
304
305	break;
306	}
307	case (ONE_FILE) :
308	{
309	SuperClassWriter::addDimension(dimXid, domain->global_zoom_ni);
310	SuperClassWriter::addDimension(dimYid, domain->global_zoom_nj);
311
312	if (domain->hasBounds)
313	SuperClassWriter::addDimension(dimVertId, domain->nvertex);
314
315	if (domain->hasLonLat)
316	{
317	switch (domain->type)
318	{
319	case CDomain::type_attr::curvilinear :
320	dim0.push_back(dimYid); dim0.push_back(dimXid);
321	lonid = StdString("nav_lon").append(appendDomid);
322	latid = StdString("nav_lat").append(appendDomid);
323	SuperClassWriter::addVariable(latid, typePrec, dim0);
324	SuperClassWriter::addVariable(lonid, typePrec, dim0);
325	break;
326
327	case CDomain::type_attr::rectilinear :
328	dim0.push_back(dimYid);
329	dim1.push_back(dimXid);
330	lonid = StdString("lon").append(appendDomid);
331	latid = StdString("lat").append(appendDomid);
332	SuperClassWriter::addVariable(latid, typePrec, dim0);
333	SuperClassWriter::addVariable(lonid, typePrec, dim1);
334	break;
335	}
336
337	bounds_lonid = StdString("bounds_lon").append(appendDomid);
338	bounds_latid = StdString("bounds_lat").append(appendDomid);
339
340	this->writeAxisAttributes
341	(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid);
342	this->writeAxisAttributes
343	(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid);
344
345	if (domain->hasBounds)
346	{
347	SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid);
348	SuperClassWriter::addAttribute("bounds", bounds_latid, &latid);
349
350	dim0.clear();
351	dim0.push_back(dimYid);
352	dim0.push_back(dimXid);
353	dim0.push_back(dimVertId);
354	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0);
355	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0);
356	}
357	}
358
359	if (domain->hasArea)
360	{
361	dim0.clear();
362	dim0.push_back(dimYid); dim0.push_back(dimXid);
363	SuperClassWriter::addVariable(areaId, typePrec, dim0);
364	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
365	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
366	dim0.clear();
367	}
368
369	SuperClassWriter::definition_end();
370
371	switch (domain->type)
372	{
373	case CDomain::type_attr::curvilinear :
374	{
375	std::vector<StdSize> start(2) ;
376	std::vector<StdSize> count(2) ;
377	if (domain->isEmpty())
378	{
379	start[0]=0 ; start[1]=0 ;
380	count[0]=0 ; count[1]=0 ;
381	}
382	else
383	{
384	start[1]=domain->zoom_ibegin-domain->global_zoom_ibegin;
385	start[0]=domain->zoom_jbegin-domain->global_zoom_jbegin;
386	count[1]=domain->zoom_ni ; count[0]=domain->zoom_nj ;
387	}
388
389	if (domain->hasLonLat)
390	{
391	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count);
392	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count);
393	}
394	break;
395	}
396	case CDomain::type_attr::rectilinear :
397	{
398	if (domain->hasLonLat)
399	{
400	std::vector<StdSize> start(1) ;
401	std::vector<StdSize> count(1) ;
402	if (domain->isEmpty())
403	{
404	start[0]=0 ;
405	count[0]=0 ;
406	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count);
407	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count);
408	}
409	else
410	{
411	start[0]=domain->zoom_jbegin-domain->global_zoom_jbegin;
412	count[0]=domain->zoom_nj;
413	CArray<double,1> lat = writtenLat(Range(fromStart,toEnd,domain->zoom_ni));
414	SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0,&start,&count);
415
416	start[0]=domain->zoom_ibegin-domain->global_zoom_ibegin;
417	count[0]=domain->zoom_ni;
418	CArray<double,1> lon = writtenLon(Range(0,domain->zoom_ni-1));
419	SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0,&start,&count);
420	}
421	}
422	break;
423	}
424	}
425
426	if (domain->hasBounds)
427	{
428	std::vector<StdSize> start(3);
429	std::vector<StdSize> count(3);
430	if (domain->isEmpty())
431	{
432	start[2] = start[1] = start[0] = 0;
433	count[2] = count[1] = count[0] = 0;
434	}
435	else
436	{
437	start[2] = 0;
438	start[1] = domain->zoom_ibegin - domain->global_zoom_ibegin;
439	start[0] = domain->zoom_jbegin - domain->global_zoom_jbegin;
440	count[2] = domain->nvertex;
441	count[1] = domain->zoom_ni;
442	count[0] = domain->zoom_nj;
443	}
444
445	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0, &start, &count);
446	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0, &start, &count);
447	}
448
449	if (domain->hasArea)
450	{
451	std::vector<StdSize> start(2);
452	std::vector<StdSize> count(2);
453
454	if (domain->isEmpty())
455	{
456	start[0] = 0; start[1] = 0;
457	count[0] = 0; count[1] = 0;
458	}
459	else
460	{
461	start[1] = domain->zoom_ibegin - domain->global_zoom_ibegin;
462	start[0] = domain->zoom_jbegin - domain->global_zoom_jbegin;
463	count[1] = domain->zoom_ni;
464	count[0] = domain->zoom_nj;
465	}
466
467	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0, &start, &count);
468	}
469
470	SuperClassWriter::definition_start();
471	break;
472	}
473	default :
474	ERROR("CNc4DataOutput::writeDomain(domain)",
475	<< "[ type = " << SuperClass::type << "]"
476	<< " not implemented yet !");
477	}
478	}
479	catch (CNetCdfException& e)
480	{
481	StdString msg("On writing the domain : ");
482	msg.append(domid); msg.append("\n");
483	msg.append("In the context : ");
484	msg.append(context->getId()); msg.append("\n");
485	msg.append(e.what());
486	ERROR("CNc4DataOutput::writeDomain_(CDomain* domain)", << msg);
487	}
488
489	domain->addRelFile(this->filename);
490	}
491
492	//--------------------------------------------------------------
493
494	void CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain)
495	{
496	CContext* context = CContext::getCurrent() ;
497	CContextServer* server=context->server ;
498
499	if (domain->IsWritten(this->filename)) return;
500	domain->checkAttributes();
501	if (domain->isEmpty())
502	if (SuperClass::type==MULTI_FILE) return ;
503
504	nc_type typePrec ;
505	if (domain->prec.isEmpty()) typePrec = NC_FLOAT ;
506	else if (domain->prec==4) typePrec = NC_FLOAT ;
507	else if (domain->prec==8) typePrec = NC_DOUBLE ;
508
509	std::vector<StdString> dim0;
510	StdString domid = domain->getDomainOutputName();
511	StdString domainName = domain->name;
512	domain->assignMesh(domainName, domain->nvertex);
513	domain->mesh->createMeshEpsilon(server->intraComm, domain->lonvalue, domain->latvalue, domain->bounds_lonvalue, domain->bounds_latvalue);
514
515	StdString node_x = domainName + "_node_x";
516	StdString node_y = domainName + "_node_y";
517
518	StdString edge_x = domainName + "_edge_x";
519	StdString edge_y = domainName + "_edge_y";
520	StdString edge_nodes = domainName + "_edge_nodes";
521
522	StdString face_x = domainName + "_face_x";
523	StdString face_y = domainName + "_face_y";
524	StdString face_nodes = domainName + "_face_nodes";
525	StdString face_edges = domainName + "_face_edges";
526	StdString edge_faces = domainName + "_edge_face_links";
527	StdString face_faces = domainName + "_face_links";
528
529	StdString dimNode = "n" + domainName + "_node";
530	StdString dimEdge = "n" + domainName + "_edge";
531	StdString dimFace = "n" + domainName + "_face";
532	StdString dimVertex = "n" + domainName + "_vertex";
533	StdString dimTwo = "Two";
534
535	if (!SuperClassWriter::dimExist(dimTwo)) SuperClassWriter::addDimension(dimTwo, 2);
536	if (!isWrittenDomain(domid))
537	{
538	dim0.clear();
539	SuperClassWriter::addVariable(domainName, NC_INT, dim0);
540	SuperClassWriter::addAttribute("cf_role", StdString("mesh_topology"), &domainName);
541	SuperClassWriter::addAttribute("long_name", StdString("Topology data of 2D unstructured mesh"), &domainName);
542	SuperClassWriter::addAttribute("topology_dimension", 2, &domainName);
543	SuperClassWriter::addAttribute("node_coordinates", node_x + " " + node_y, &domainName);
544	}
545
546	try
547	{
548	switch (SuperClass::type)
549	{
550	case (ONE_FILE) :
551	{
552	// Adding nodes
553	if (domain->nvertex == 1)
554	{
555	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
556	{
557	SuperClassWriter::addDimension(dimNode, domain->ni_glo);
558	dim0.clear();
559	dim0.push_back(dimNode);
560	SuperClassWriter::addVariable(node_x, typePrec, dim0);
561	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
562	SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x);
563	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
564	SuperClassWriter::addVariable(node_y, typePrec, dim0);
565	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
566	SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y);
567	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
568	}
569	} // domain->nvertex == 1
570
571	// Adding edges and nodes, if nodes have not been defined previously
572	if (domain->nvertex == 2)
573	{
574	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
575	{
576	SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo);
577	dim0.clear();
578	dim0.push_back(dimNode);
579	SuperClassWriter::addVariable(node_x, typePrec, dim0);
580	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
581	SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x);
582	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
583	SuperClassWriter::addVariable(node_y, typePrec, dim0);
584	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
585	SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y);
586	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
587	}
588	SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName);
589	SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName);
590	SuperClassWriter::addDimension(dimEdge, domain->ni_glo);
591	dim0.clear();
592	dim0.push_back(dimEdge);
593	SuperClassWriter::addVariable(edge_x, typePrec, dim0);
594	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x);
595	SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x);
596	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x);
597	SuperClassWriter::addVariable(edge_y, typePrec, dim0);
598	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y);
599	SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y);
600	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y);
601	dim0.clear();
602	dim0.push_back(dimEdge);
603	dim0.push_back(dimTwo);
604	SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0);
605	SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes);
606	SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes);
607	SuperClassWriter::addAttribute("start_index", 0, &edge_nodes);
608	} // domain->nvertex == 2
609
610	// Adding faces, edges, and nodes, if edges and nodes have not been defined previously
611	if (domain->nvertex > 2)
612	{
613	// Nodes
614	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
615	{
616	SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo);
617	dim0.clear();
618	dim0.push_back(dimNode);
619	SuperClassWriter::addVariable(node_x, typePrec, dim0);
620	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
621	SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x);
622	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
623	SuperClassWriter::addVariable(node_y, typePrec, dim0);
624	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
625	SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y);
626	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
627	}
628	if (!SuperClassWriter::varExist(edge_x) \|\| !SuperClassWriter::varExist(edge_y))
629	{
630	SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName);
631	SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName);
632	SuperClassWriter::addDimension(dimEdge, domain->mesh->nbEdgesGlo);
633	dim0.clear();
634	dim0.push_back(dimEdge);
635	SuperClassWriter::addVariable(edge_x, typePrec, dim0);
636	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x);
637	SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x);
638	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x);
639	SuperClassWriter::addVariable(edge_y, typePrec, dim0);
640	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y);
641	SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y);
642	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y);
643	dim0.clear();
644	dim0.push_back(dimEdge);
645	dim0.push_back(dimTwo);
646	SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0);
647	SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes);
648	SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes);
649	SuperClassWriter::addAttribute("start_index", 0, &edge_nodes);
650	}
651	SuperClassWriter::addAttribute("face_coordinates", face_x + " " + face_y, &domainName);
652	SuperClassWriter::addAttribute("face_node_connectivity", face_nodes, &domainName);
653	SuperClassWriter::addDimension(dimFace, domain->ni_glo);
654	SuperClassWriter::addDimension(dimVertex, domain->nvertex);
655	dim0.clear();
656	dim0.push_back(dimFace);
657	SuperClassWriter::addVariable(face_x, typePrec, dim0);
658	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &face_x);
659	SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh faces."), &face_x);
660	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &face_x);
661	SuperClassWriter::addVariable(face_y, typePrec, dim0);
662	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &face_y);
663	SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh faces."), &face_y);
664	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &face_y);
665	dim0.clear();
666	dim0.push_back(dimFace);
667	dim0.push_back(dimVertex);
668	SuperClassWriter::addVariable(face_nodes, NC_INT, dim0);
669	SuperClassWriter::addAttribute("cf_role", StdString("face_node_connectivity"), &face_nodes);
670	SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its corner nodes."), &face_nodes);
671	SuperClassWriter::addAttribute("start_index", 0, &face_nodes);
672	dim0.clear();
673	dim0.push_back(dimFace);
674	dim0.push_back(dimVertex);
675	SuperClassWriter::addVariable(face_edges, NC_INT, dim0);
676	SuperClassWriter::addAttribute("cf_role", StdString("face_edge_connectivity"), &face_edges);
677	SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its edges."), &face_edges);
678	SuperClassWriter::addAttribute("start_index", 0, &face_edges);
679	SuperClassWriter::addAttribute("_FillValue", 999999, &face_edges);
680	dim0.clear();
681	dim0.push_back(dimEdge);
682	dim0.push_back(dimTwo);
683	SuperClassWriter::addVariable(edge_faces, NC_INT, dim0);
684	SuperClassWriter::addAttribute("cf_role", StdString("edge_face connectivity"), &edge_faces);
685	SuperClassWriter::addAttribute("long_name", StdString("neighbor faces for edges"), &edge_faces);
686	SuperClassWriter::addAttribute("start_index", 0, &edge_faces);
687	SuperClassWriter::addAttribute("_FillValue", -999, &edge_faces);
688	SuperClassWriter::addAttribute("comment", StdString("missing neighbor faces are indicated using _FillValue"), &edge_faces);
689	dim0.clear();
690	dim0.push_back(dimFace);
691	dim0.push_back(dimVertex);
692	SuperClassWriter::addVariable(face_faces, NC_INT, dim0);
693	SuperClassWriter::addAttribute("cf_role", StdString("face_face connectivity"), &face_faces);
694	SuperClassWriter::addAttribute("long_name", StdString("Indicates which other faces neighbor each face"), &face_faces);
695	SuperClassWriter::addAttribute("start_index", 0, &face_faces);
696	SuperClassWriter::addAttribute("_FillValue", 999999, &face_faces);
697	SuperClassWriter::addAttribute("flag_values", -1, &face_faces);
698	SuperClassWriter::addAttribute("flag_meanings", StdString("out_of_mesh"), &face_faces);
699	} // domain->nvertex > 2
700
701	SuperClassWriter::definition_end();
702
703	std::vector<StdSize> startEdges(1) ;
704	std::vector<StdSize> countEdges(1) ;
705	std::vector<StdSize> startNodes(1) ;
706	std::vector<StdSize> countNodes(1) ;
707	std::vector<StdSize> startFaces(1) ;
708	std::vector<StdSize> countFaces(1) ;
709	std::vector<StdSize> startEdgeNodes(2) ;
710	std::vector<StdSize> countEdgeNodes(2) ;
711	std::vector<StdSize> startEdgeFaces(2) ;
712	std::vector<StdSize> countEdgeFaces(2) ;
713	std::vector<StdSize> startFaceConctv(2) ;
714	std::vector<StdSize> countFaceConctv(2) ;
715
716	if (!isWrittenDomain(domid))
717	{
718	if (domain->nvertex == 1)
719	{
720	if (domain->isEmpty())
721	{
722	startNodes[0]=0 ;
723	countNodes[0]=0 ;
724	}
725	else
726	{
727	startNodes[0] = domain->zoom_ibegin-domain->global_zoom_ibegin;
728	countNodes[0] = domain->zoom_ni ;
729	}
730
731	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes);
732	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes);
733	}
734	else if (domain->nvertex == 2)
735	{
736	if (domain->isEmpty())
737	{
738	startEdges[0]=0 ;
739	countEdges[0]=0 ;
740	startNodes[0]=0 ;
741	countNodes[0]=0 ;
742	startEdgeNodes[0]=0;
743	startEdgeNodes[1]=0;
744	countEdgeNodes[0]=0;
745	countEdgeNodes[1]=0;
746
747	}
748	else
749	{
750	startEdges[0] = domain->zoom_ibegin-domain->global_zoom_ibegin;
751	countEdges[0] = domain->zoom_ni;
752	startNodes[0] = domain->mesh->node_start;
753	countNodes[0] = domain->mesh->node_count;
754	startEdgeNodes[0] = domain->zoom_ibegin-domain->global_zoom_ibegin;
755	startEdgeNodes[1] = 0;
756	countEdgeNodes[0] = domain->zoom_ni;
757	countEdgeNodes[1] = 2;
758	}
759	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes);
760	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes);
761	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
762	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
763	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
764	}
765	else
766	{
767	if (domain->isEmpty())
768	{
769	startFaces[0] = 0 ;
770	countFaces[0] = 0 ;
771	startNodes[0] = 0;
772	countNodes[0] = 0;
773	startEdges[0] = 0;
774	countEdges[0] = 0;
775	startEdgeFaces[0] = 0;
776	startEdgeFaces[1] = 0;
777	countEdgeFaces[0] = 0;
778	countEdgeFaces[1] = 0;
779	startFaceConctv[0] = 0;
780	startFaceConctv[1] = 0;
781	countFaceConctv[0] = 0;
782	countFaceConctv[1] = 0;
783	}
784	else
785	{
786	startFaces[0] = domain->zoom_ibegin-domain->global_zoom_ibegin;
787	countFaces[0] = domain->zoom_ni ;
788	startNodes[0] = domain->mesh->node_start;
789	countNodes[0] = domain->mesh->node_count;
790	startEdges[0] = domain->mesh->edge_start;
791	countEdges[0] = domain->mesh->edge_count;
792	startEdgeNodes[0] = domain->mesh->edge_start;
793	startEdgeNodes[1] = 0;
794	countEdgeNodes[0] = domain->mesh->edge_count;
795	countEdgeNodes[1]= 2;
796	startEdgeFaces[0] = domain->mesh->edge_start;
797	startEdgeFaces[1]= 0;
798	countEdgeFaces[0] = domain->mesh->edge_count;
799	countEdgeFaces[1]= 2;
800	startFaceConctv[0] = domain->zoom_ibegin-domain->global_zoom_ibegin;
801	startFaceConctv[1] = 0;
802	countFaceConctv[0] = domain->zoom_ni;
803	countFaceConctv[1] = domain->nvertex;
804	}
805	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes);
806	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes);
807	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
808	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
809	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
810	SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0, &startFaces, &countFaces);
811	SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0, &startFaces, &countFaces);
812	SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes, isCollective, 0, &startFaceConctv, &countFaceConctv);
813	SuperClassWriter::writeData(domain->mesh->face_edges, face_edges, isCollective, 0, &startFaceConctv, &countFaceConctv);
814	SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces, isCollective, 0, &startEdgeFaces, &countEdgeFaces);
815	SuperClassWriter::writeData(domain->mesh->face_faces, face_faces, isCollective, 0, &startFaceConctv, &countFaceConctv);
816	}
817	setWrittenDomain(domid);
818	} // !isWrittenDomain
819	else
820	{
821	if (domain->nvertex == 2)
822	{
823	startEdges[0] = domain->zoom_ibegin-domain->global_zoom_ibegin;
824	countEdges[0] = domain->zoom_ni;
825	startEdgeNodes[0] = domain->zoom_ibegin-domain->global_zoom_ibegin;
826	startEdgeNodes[1] = 0;
827	countEdgeNodes[0] = domain->zoom_ni;
828	countEdgeNodes[1]= 2;
829	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
830	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
831	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
832	}
833	if (domain->nvertex > 2)
834	{
835
836	if (!domain->mesh->edgesAreWritten)
837	{
838	startEdges[0] = domain->mesh->edge_start;
839	countEdges[0] = domain->mesh->edge_count;
840	startEdgeNodes[0] = domain->mesh->edge_start;
841	startEdgeNodes[1] = 0;
842	countEdgeNodes[0] = domain->mesh->edge_count;
843	countEdgeNodes[1]= 2;
844	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
845	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
846	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
847	}
848	startFaces[0] = domain->zoom_ibegin-domain->global_zoom_ibegin;
849	countFaces[0] = domain->zoom_ni;
850	startEdgeFaces[0] = domain->mesh->edge_start;
851	startEdgeFaces[1]= 0;
852	countEdgeFaces[0] = domain->mesh->edge_count;
853	countEdgeFaces[1]= 2;
854	startFaceConctv[0] = domain->zoom_ibegin-domain->global_zoom_ibegin;
855	startFaceConctv[1] = 0;
856	countFaceConctv[0] = domain->zoom_ni;
857	countFaceConctv[1] = domain->nvertex;
858	SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0, &startFaces, &countFaces);
859	SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0, &startFaces, &countFaces);
860	SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes, isCollective, 0, &startFaceConctv, &countFaceConctv);
861	SuperClassWriter::writeData(domain->mesh->face_edges, face_edges, isCollective, 0, &startFaceConctv, &countFaceConctv);
862	SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces, isCollective, 0, &startEdgeFaces, &countEdgeFaces);
863	SuperClassWriter::writeData(domain->mesh->face_faces, face_faces, isCollective, 0, &startFaceConctv, &countFaceConctv);
864	}
865	}// isWrittenDomain
866
867	SuperClassWriter::definition_start();
868
869	break;
870	} // ONE_FILE
871
872	case (MULTI_FILE) :
873	{
874	break;
875	}
876
877	default :
878	ERROR("CNc4DataOutput::writeDomain(domain)",
879	<< "[ type = " << SuperClass::type << "]"
880	<< " not implemented yet !");
881	} // switch
882	} // try
883
884	catch (CNetCdfException& e)
885	{
886	StdString msg("On writing the domain : ");
887	msg.append(domid); msg.append("\n");
888	msg.append("In the context : ");
889	msg.append(context->getId()); msg.append("\n");
890	msg.append(e.what());
891	ERROR("CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain)", << msg);
892	}
893
894	domain->addRelFile(this->filename);
895	}
896
897	//--------------------------------------------------------------
898
899	void CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)
900	{
901	CContext* context = CContext::getCurrent() ;
902	CContextServer* server=context->server ;
903
904	if (domain->IsWritten(this->filename)) return;
905	domain->checkAttributes();
906
907	if (domain->isEmpty())
908	if (SuperClass::type==MULTI_FILE) return ;
909
910	std::vector<StdString> dim0, dim1;
911	StdString domid = domain->getDomainOutputName();
912	if (isWrittenDomain(domid)) return ;
913	else setWrittenDomain(domid);
914
915	StdString appendDomid = (singleDomain) ? "" : "_"+domid ;
916
917	StdString dimXid = StdString("cell").append(appendDomid);
918	StdString dimVertId = StdString("nvertex").append(appendDomid);
919
920	string lonid,latid,bounds_lonid,bounds_latid ;
921	string areaId = "area" + appendDomid;
922
923	nc_type typePrec ;
924	if (domain->prec.isEmpty()) typePrec = NC_FLOAT ;
925	else if (domain->prec==4) typePrec = NC_FLOAT ;
926	else if (domain->prec==8) typePrec = NC_DOUBLE ;
927
928	int nvertex = (domain->nvertex.isEmpty()) ? 0 : domain->nvertex;
929
930	CArray<size_t, 1>& indexToWrite = domain->localIndexToWriteOnServer;
931	int nbWritten = indexToWrite.numElements();
932	CArray<double,1> writtenLat, writtenLon;
933	CArray<double,2> writtenBndsLat, writtenBndsLon;
934	CArray<double,1> writtenArea;
935
936	if (domain->hasLonLat)
937	{
938	writtenLat.resize(nbWritten);
939	writtenLon.resize(nbWritten);
940	for (int idx = 0; idx < nbWritten; ++idx)
941	{
942	writtenLat(idx) = domain->latvalue(indexToWrite(idx));
943	writtenLon(idx) = domain->lonvalue(indexToWrite(idx));
944	}
945
946
947	if (domain->hasBounds)
948	{
949	int nvertex = domain->nvertex, idx;
950	writtenBndsLat.resize(nvertex, nbWritten);
951	writtenBndsLon.resize(nvertex, nbWritten);
952	CArray<double,2>& boundslat = domain->bounds_latvalue;
953	CArray<double,2>& boundslon = domain->bounds_lonvalue;
954	for (idx = 0; idx < nbWritten; ++idx)
955	for (int nv = 0; nv < nvertex; ++nv)
956	{
957	writtenBndsLat(nv, idx) = boundslat(nv, int(indexToWrite(idx)));
958	writtenBndsLon(nv, idx) = boundslon(nv, int(indexToWrite(idx)));
959	}
960	}
961	}
962
963	if (domain->hasArea)
964	{
965	writtenArea.resize(nbWritten);
966	for (int idx = 0; idx < nbWritten; ++idx)
967	{
968	writtenArea(idx) = domain->areavalue(indexToWrite(idx));
969	}
970	}
971
972	try
973	{
974	switch (SuperClass::type)
975	{
976	case (MULTI_FILE) :
977	{
978	dim0.push_back(dimXid);
979	SuperClassWriter::addDimension(dimXid, domain->zoom_ni);
980
981	lonid = StdString("lon").append(appendDomid);
982	latid = StdString("lat").append(appendDomid);
983	bounds_lonid = StdString("bounds_lon").append(appendDomid);
984	bounds_latid = StdString("bounds_lat").append(appendDomid);
985	if (domain->hasLonLat)
986	{
987	SuperClassWriter::addVariable(latid, typePrec, dim0);
988	SuperClassWriter::addVariable(lonid, typePrec, dim0);
989	this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid);
990	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid);
991	this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid);
992	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid);
993	if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex);
994	}
995	dim0.clear();
996	if (domain->hasBounds)
997	{
998	dim0.push_back(dimXid);
999	dim0.push_back(dimVertId);
1000	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0);
1001	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0);
1002	}
1003
1004	dim0.clear();
1005	dim0.push_back(dimXid);
1006	if (domain->hasArea)
1007	{
1008	SuperClassWriter::addVariable(areaId, typePrec, dim0);
1009	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
1010	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
1011	}
1012
1013	SuperClassWriter::definition_end();
1014
1015	if (domain->hasLonLat)
1016	{
1017	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0);
1018	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0);
1019	if (domain->hasBounds)
1020	{
1021	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0);
1022	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0);
1023	}
1024	}
1025
1026	if (domain->hasArea)
1027	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0);
1028
1029	SuperClassWriter::definition_start();
1030	break ;
1031	}
1032
1033	case (ONE_FILE) :
1034	{
1035	lonid = StdString("lon").append(appendDomid);
1036	latid = StdString("lat").append(appendDomid);
1037	bounds_lonid = StdString("bounds_lon").append(appendDomid);
1038	bounds_latid = StdString("bounds_lat").append(appendDomid);
1039	dim0.push_back(dimXid);
1040	SuperClassWriter::addDimension(dimXid, domain->ni_glo);
1041	if (domain->hasLonLat)
1042	{
1043	SuperClassWriter::addVariable(latid, typePrec, dim0);
1044	SuperClassWriter::addVariable(lonid, typePrec, dim0);
1045
1046	this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid);
1047	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid);
1048	this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid);
1049	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid);
1050	if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, nvertex);
1051	}
1052	dim0.clear();
1053
1054	if (domain->hasBounds)
1055	{
1056	dim0.push_back(dimXid);
1057	dim0.push_back(dimVertId);
1058	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0);
1059	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0);
1060	}
1061
1062	if (domain->hasArea)
1063	{
1064	dim0.clear();
1065	dim0.push_back(dimXid);
1066	SuperClassWriter::addVariable(areaId, typePrec, dim0);
1067	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
1068	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
1069	}
1070
1071	SuperClassWriter::definition_end();
1072
1073	std::vector<StdSize> start(1), startBounds(2) ;
1074	std::vector<StdSize> count(1), countBounds(2) ;
1075	if (domain->isEmpty())
1076	{
1077	start[0]=0 ;
1078	count[0]=0 ;
1079	startBounds[1]=0 ;
1080	countBounds[1]=nvertex ;
1081	startBounds[0]=0 ;
1082	countBounds[0]=0 ;
1083	}
1084	else
1085	{
1086	start[0]=domain->zoom_ibegin - domain->global_zoom_ibegin;
1087	count[0]=domain->zoom_ni;
1088	startBounds[0]=domain->zoom_ibegin-domain->global_zoom_ibegin;
1089	startBounds[1]=0 ;
1090	countBounds[0]=domain->zoom_ni;
1091	countBounds[1]=nvertex ;
1092	}
1093
1094	if (domain->hasLonLat)
1095	{
1096	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count);
1097	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count);
1098	if (domain->hasBounds)
1099	{
1100	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0,&startBounds,&countBounds);
1101	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0,&startBounds,&countBounds);
1102	}
1103	}
1104
1105	if (domain->hasArea)
1106	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0, &start, &count);
1107
1108	SuperClassWriter::definition_start();
1109
1110	break;
1111	}
1112	default :
1113	ERROR("CNc4DataOutput::writeDomain(domain)",
1114	<< "[ type = " << SuperClass::type << "]"
1115	<< " not implemented yet !");
1116	}
1117	}
1118	catch (CNetCdfException& e)
1119	{
1120	StdString msg("On writing the domain : ");
1121	msg.append(domid); msg.append("\n");
1122	msg.append("In the context : ");
1123	msg.append(context->getId()); msg.append("\n");
1124	msg.append(e.what());
1125	ERROR("CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)", << msg);
1126	}
1127	domain->addRelFile(this->filename);
1128	}
1129	//--------------------------------------------------------------
1130
1131	void CNc4DataOutput::writeAxis_(CAxis* axis)
1132	{
1133	if (axis->IsWritten(this->filename)) return;
1134	axis->checkAttributes();
1135
1136	axis->computeWrittenIndex();
1137	axis->computeWrittenCompressedIndex(comm_file);
1138
1139	int zoom_size = (MULTI_FILE == SuperClass::type) ? axis->zoom_n
1140	: axis->global_zoom_n;
1141
1142	int zoom_count = axis->zoom_n;
1143	int zoom_begin = axis->zoom_begin;
1144	// int zoom_begin = (MULTI_FILE == SuperClass::type) ? axis->global_zoom_begin
1145	// : axis->zoom_begin;
1146
1147	if ((0 == axis->zoom_n) && (MULTI_FILE == SuperClass::type)) return;
1148
1149	std::vector<StdString> dims;
1150	StdString axisid = axis->getAxisOutputName();
1151	if (isWrittenAxis(axisid)) return ;
1152	else setWrittenAxis(axisid);
1153
1154	nc_type typePrec ;
1155	if (axis->prec.isEmpty()) typePrec = NC_FLOAT ;
1156	else if (axis->prec==4) typePrec = NC_FLOAT ;
1157	else if (axis->prec==8) typePrec = NC_DOUBLE ;
1158
1159	if (!axis->label.isEmpty()) typePrec = NC_CHAR ;
1160	string strId="str_len" ;
1161	try
1162	{
1163	SuperClassWriter::addDimension(axisid, zoom_size);
1164	if (!axis->label.isEmpty()) SuperClassWriter::addDimension(strId, stringArrayLen);
1165	if (axis->hasValue)
1166	{
1167	dims.push_back(axisid);
1168	if (!axis->label.isEmpty()) dims.push_back(strId);
1169	SuperClassWriter::addVariable(axisid, typePrec, dims);
1170
1171	if (!axis->name.isEmpty())
1172	SuperClassWriter::addAttribute("name", axis->name.getValue(), &axisid);
1173
1174	if (!axis->standard_name.isEmpty())
1175	SuperClassWriter::addAttribute("standard_name", axis->standard_name.getValue(), &axisid);
1176
1177	if (!axis->long_name.isEmpty())
1178	SuperClassWriter::addAttribute("long_name", axis->long_name.getValue(), &axisid);
1179
1180	if (!axis->unit.isEmpty())
1181	SuperClassWriter::addAttribute("units", axis->unit.getValue(), &axisid);
1182
1183	if (!axis->positive.isEmpty())
1184	{
1185	SuperClassWriter::addAttribute("axis", string("Z"), &axisid);
1186	SuperClassWriter::addAttribute("positive",
1187	(axis->positive == CAxis::positive_attr::up) ? string("up") : string("down"),
1188	&axisid);
1189	}
1190
1191	if (!axis->formula.isEmpty())
1192	SuperClassWriter::addAttribute("formula", axis->formula.getValue(), &axisid);
1193
1194	if (!axis->formula_term.isEmpty())
1195	SuperClassWriter::addAttribute("formula_term", axis->formula_term.getValue(), &axisid);
1196
1197	StdString axisBoundsId = axisid + "_bounds";
1198	if (!axis->bounds.isEmpty() && axis->label.isEmpty())
1199	{
1200	dims.push_back("axis_nbounds");
1201	SuperClassWriter::addVariable(axisBoundsId, typePrec, dims);
1202	SuperClassWriter::addAttribute("bounds", axisBoundsId, &axisid);
1203	if (!axis->formula_bounds.isEmpty())
1204	SuperClassWriter::addAttribute("formula", axis->formula_bounds.getValue(), &axisid);
1205
1206	if (!axis->formula_term_bounds.isEmpty())
1207	SuperClassWriter::addAttribute("formula_term", axis->formula_bounds.getValue(), &axisid);
1208	}
1209
1210
1211	SuperClassWriter::definition_end();
1212
1213	CArray<size_t, 1>& indexToWrite = axis->localIndexToWriteOnServer;
1214	int nbWritten = indexToWrite.numElements();
1215	CArray<double,1> axis_value(indexToWrite.numElements());
1216	for (int i = 0; i < nbWritten; i++) axis_value(i) = axis->value(indexToWrite(i));
1217	CArray<double,2> axis_bounds;
1218	CArray<string,1> axis_label;
1219	if (!axis->label.isEmpty())
1220	{
1221	axis_label.resize(indexToWrite.numElements());
1222	for (int i = 0; i < nbWritten; i++) axis_label(i) = axis->label(indexToWrite(i));
1223	}
1224
1225	switch (SuperClass::type)
1226	{
1227	case MULTI_FILE:
1228	{
1229	if (axis->label.isEmpty())
1230	SuperClassWriter::writeData(axis_value, axisid, isCollective, 0);
1231
1232	if (!axis->bounds.isEmpty() && axis->label.isEmpty())
1233	SuperClassWriter::writeData(axis->bounds, axisBoundsId, isCollective, 0);
1234
1235	// Need to check after
1236	if (!axis->label.isEmpty())
1237	SuperClassWriter::writeData(axis_label, axisid, isCollective, 0);
1238
1239	SuperClassWriter::definition_start();
1240	break;
1241	}
1242	case ONE_FILE:
1243	{
1244	std::vector<StdSize> start(1), startBounds(2) ;
1245	std::vector<StdSize> count(1), countBounds(2) ;
1246	start[0] = startBounds[0] = zoom_begin - axis->global_zoom_begin;
1247	count[0] = countBounds[0] = zoom_count; // zoom_size
1248	startBounds[1] = 0;
1249	countBounds[1] = 2;
1250
1251	if (axis->label.isEmpty())
1252	SuperClassWriter::writeData(axis_value, axisid, isCollective, 0, &start, &count);
1253
1254	if (!axis->bounds.isEmpty() && axis->label.isEmpty())
1255	{
1256	axis_bounds.resize(2, indexToWrite.numElements());
1257	for (int i = 0; i < nbWritten; ++i)
1258	{
1259	axis_bounds(0, i) = axis->bounds(0, int(indexToWrite(i)));
1260	axis_bounds(1, i) = axis->bounds(1, int(indexToWrite(i)));
1261	}
1262	SuperClassWriter::writeData(axis->bounds, axisBoundsId, isCollective, 0, &startBounds, &countBounds);
1263	}
1264
1265	// Need to check after
1266	if (!axis->label.isEmpty())
1267	{
1268	std::vector<StdSize> startLabel(2), countLabel(2);
1269	startLabel[0] = start[0]; startLabel[1] = 0;
1270	countLabel[0] = count[0]; countLabel[1] = stringArrayLen;
1271	SuperClassWriter::writeData(axis_label, axisid, isCollective, 0, &startLabel, &countLabel);
1272	}
1273
1274	SuperClassWriter::definition_start();
1275
1276	break;
1277	}
1278	default :
1279	ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)",
1280	<< "[ type = " << SuperClass::type << "]"
1281	<< " not implemented yet !");
1282	}
1283	}
1284	}
1285	catch (CNetCdfException& e)
1286	{
1287	StdString msg("On writing the axis : ");
1288	msg.append(axisid); msg.append("\n");
1289	msg.append("In the context : ");
1290	CContext* context = CContext::getCurrent() ;
1291	msg.append(context->getId()); msg.append("\n");
1292	msg.append(e.what());
1293	ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)", << msg);
1294	}
1295	axis->addRelFile(this->filename);
1296	}
1297
1298	void CNc4DataOutput::writeScalar_(CScalar* scalar)
1299	{
1300	if (scalar->IsWritten(this->filename)) return;
1301	scalar->checkAttributes();
1302	int scalarSize = 1;
1303
1304	StdString scalaId = scalar->getScalarOutputName();
1305	if (isWrittenAxis(scalaId)) return ;
1306	else setWrittenAxis(scalaId);
1307
1308	nc_type typePrec ;
1309	if (scalar->prec.isEmpty()) typePrec = NC_FLOAT ;
1310	else if (scalar->prec==4) typePrec = NC_FLOAT ;
1311	else if (scalar->prec==8) typePrec = NC_DOUBLE ;
1312
1313
1314	try
1315	{
1316	if (!scalar->value.isEmpty())
1317	{
1318	// dims.push_back(scalaId);
1319	std::vector<StdString> dims;
1320	SuperClassWriter::addVariable(scalaId, typePrec, dims);
1321
1322	if (!scalar->name.isEmpty())
1323	SuperClassWriter::addAttribute("name", scalar->name.getValue(), &scalaId);
1324
1325	if (!scalar->standard_name.isEmpty())
1326	SuperClassWriter::addAttribute("standard_name", scalar->standard_name.getValue(), &scalaId);
1327
1328	if (!scalar->long_name.isEmpty())
1329	SuperClassWriter::addAttribute("long_name", scalar->long_name.getValue(), &scalaId);
1330
1331	if (!scalar->unit.isEmpty())
1332	SuperClassWriter::addAttribute("units", scalar->unit.getValue(), &scalaId);
1333
1334	SuperClassWriter::definition_end();
1335
1336	switch (SuperClass::type)
1337	{
1338	case MULTI_FILE:
1339	{
1340	CArray<double,1> scalarValue(scalarSize);
1341	scalarValue(0) = scalar->value;
1342	SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0);
1343	SuperClassWriter::definition_start();
1344
1345	break;
1346	}
1347	case ONE_FILE:
1348	{
1349	CArray<double,1> scalarValue(scalarSize);
1350	scalarValue(0) = scalar->value;
1351
1352	std::vector<StdSize> start(1);
1353	std::vector<StdSize> count(1);
1354	start[0] = 0;
1355	count[0] = 1;
1356	SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0, &start, &count);
1357	SuperClassWriter::definition_start();
1358
1359	break;
1360	}
1361	default :
1362	ERROR("CNc4DataOutput::writeAxis_(CAxis* scalar)",
1363	<< "[ type = " << SuperClass::type << "]"
1364	<< " not implemented yet !");
1365	}
1366	}
1367	}
1368	catch (CNetCdfException& e)
1369	{
1370	StdString msg("On writing the scalar : ");
1371	msg.append(scalaId); msg.append("\n");
1372	msg.append("In the context : ");
1373	CContext* context = CContext::getCurrent() ;
1374	msg.append(context->getId()); msg.append("\n");
1375	msg.append(e.what());
1376	ERROR("CNc4DataOutput::writeScalar_(CScalar* scalar)", << msg);
1377	}
1378	scalar->addRelFile(this->filename);
1379	}
1380
1381	//--------------------------------------------------------------
1382
1383	void CNc4DataOutput::writeGridCompressed_(CGrid* grid)
1384	{
1385	if (grid->isScalarGrid() \|\| grid->isWrittenCompressed(this->filename)) return;
1386
1387	try
1388	{
1389	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
1390	std::vector<StdString> domainList = grid->getDomainList();
1391	std::vector<StdString> axisList = grid->getAxisList();
1392	std::vector<StdString> scalarList = grid->getScalarList();
1393	int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0;
1394
1395	std::vector<StdString> dims;
1396
1397	if (grid->isCompressible())
1398	{
1399	StdString varId = grid->getId() + "_points";
1400
1401	int nbIndexes = (SuperClass::type == MULTI_FILE) ? grid->getNumberWrittenIndexes() : grid->getTotalNumberWrittenIndexes();
1402	SuperClassWriter::addDimension(varId, nbIndexes);
1403
1404	dims.push_back(varId);
1405	SuperClassWriter::addVariable(varId, NC_INT, dims);
1406
1407	StdOStringStream compress;
1408	for (int i = numElement - 1; i >= 0; --i)
1409	{
1410	if (2 == axisDomainOrder(i))
1411	{
1412	CDomain* domain = CDomain::get(domainList[domainList.size() - idxDomain - 1]);
1413	StdString domId = domain->getDomainOutputName();
1414	StdString appendDomId = singleDomain ? "" : "_" + domId;
1415
1416	switch (domain->type)
1417	{
1418	case CDomain::type_attr::curvilinear:
1419	compress << "y" << appendDomId << " x" << appendDomId;
1420	break;
1421	case CDomain::type_attr::rectilinear:
1422	compress << "lat" << appendDomId << " lon" << appendDomId;
1423	break;
1424	case CDomain::type_attr::unstructured:
1425	compress << "cell" << appendDomId;
1426	break;
1427	}
1428	++idxDomain;
1429	}
1430	else if (1 == axisDomainOrder(i))
1431	{
1432	CAxis* axis = CAxis::get(axisList[axisList.size() - idxAxis - 1]);
1433	compress << axis->getAxisOutputName();
1434	++idxAxis;
1435	}
1436	else
1437	{
1438	CScalar* scalar = CScalar::get(scalarList[scalarList.size() - idxScalar - 1]);
1439	compress << scalar->getScalarOutputName();
1440	++idxScalar;
1441	}
1442
1443	if (i != 0) compress << ' ';
1444	}
1445	SuperClassWriter::addAttribute("compress", compress.str(), &varId);
1446
1447	CArray<int, 1> indexes(grid->getNumberWrittenIndexes());
1448	indexes = grid->localIndexToWriteOnServer;
1449
1450	switch (SuperClass::type)
1451	{
1452	case (MULTI_FILE):
1453	{
1454	SuperClassWriter::writeData(indexes, varId, isCollective, 0);
1455	break;
1456	}
1457	case (ONE_FILE):
1458	{
1459	if (grid->doGridHaveDataDistributed())
1460	grid->getDistributionServer()->computeGlobalIndex(indexes);
1461
1462	std::vector<StdSize> start, count;
1463	start.push_back(grid->getOffsetWrittenIndexes());
1464	count.push_back(grid->getNumberWrittenIndexes());
1465
1466	SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count);
1467	break;
1468	}
1469	}
1470	}
1471	else
1472	{
1473	for (int i = 0; i < numElement; ++i)
1474	{
1475	StdString varId, compress;
1476	CArray<int, 1> indexes;
1477	bool isDistributed;
1478	StdSize nbIndexes, totalNbIndexes, offset;
1479	int firstGlobalIndex;
1480
1481	if (2 == axisDomainOrder(i))
1482	{
1483	CDomain* domain = CDomain::get(domainList[idxDomain]);
1484	StdString domId = domain->getDomainOutputName();
1485
1486	if (!domain->isCompressible()
1487	\|\| domain->type == CDomain::type_attr::unstructured
1488	\|\| domain->isWrittenCompressed(this->filename)
1489	\|\| isWrittenCompressedDomain(domId))
1490	continue;
1491
1492	StdString appendDomId = singleDomain ? "" : "_" + domId;
1493
1494	varId = domId + "_points";
1495	switch (domain->type)
1496	{
1497	case CDomain::type_attr::curvilinear:
1498	compress = "y" + appendDomId + " x" + appendDomId;
1499	break;
1500	case CDomain::type_attr::rectilinear:
1501	compress = "lat" + appendDomId + " lon" + appendDomId;
1502	break;
1503	}
1504
1505	// indexes.resize(domain->compressedIndexToWriteOnServer[comm_file].numElements());
1506	// indexes = domain->compressedIndexToWriteOnServer[com_file];
1507	indexes.resize(domain->getCompressedIndexToWriteOnServer(comm_file).numElements());
1508	indexes = domain->getCompressedIndexToWriteOnServer(comm_file);
1509
1510	isDistributed = domain->isDistributed();
1511	nbIndexes = domain->getNumberWrittenIndexes(comm_file);
1512	totalNbIndexes = domain->getTotalNumberWrittenIndexes(comm_file);
1513	offset = domain->getOffsetWrittenIndexes(comm_file);
1514	firstGlobalIndex = domain->ibegin + domain->jbegin * domain->ni_glo;
1515
1516	domain->addRelFileCompressed(this->filename);
1517	setWrittenCompressedDomain(domId);
1518	++idxDomain;
1519	}
1520	else if (1 == axisDomainOrder(i))
1521	{
1522	CAxis* axis = CAxis::get(axisList[idxAxis]);
1523	StdString axisId = axis->getAxisOutputName();
1524
1525	if (!axis->isCompressible()
1526	\|\| axis->isWrittenCompressed(this->filename)
1527	\|\| isWrittenCompressedAxis(axisId))
1528	continue;
1529
1530	varId = axisId + "_points";
1531	compress = axisId;
1532
1533	// indexes.resize(axis->compressedIndexToWriteOnServer.numElements());
1534	// indexes = axis->compressedIndexToWriteOnServer;
1535
1536	indexes.resize(axis->getCompressedIndexToWriteOnServer(comm_file).numElements());
1537	indexes = axis->getCompressedIndexToWriteOnServer(comm_file);
1538
1539	isDistributed = axis->isDistributed();
1540	nbIndexes = axis->getNumberWrittenIndexes(comm_file);
1541	totalNbIndexes = axis->getTotalNumberWrittenIndexes(comm_file);
1542	offset = axis->getOffsetWrittenIndexes(comm_file);
1543	firstGlobalIndex = axis->begin;
1544
1545	axis->addRelFileCompressed(this->filename);
1546	setWrittenCompressedAxis(axisId);
1547	++idxAxis;
1548	}
1549	else
1550	{
1551	}
1552
1553	if (!varId.empty())
1554	{
1555	SuperClassWriter::addDimension(varId, (SuperClass::type == MULTI_FILE) ? nbIndexes : totalNbIndexes);
1556
1557	dims.clear();
1558	dims.push_back(varId);
1559	SuperClassWriter::addVariable(varId, NC_INT, dims);
1560
1561	SuperClassWriter::addAttribute("compress", compress, &varId);
1562
1563	switch (SuperClass::type)
1564	{
1565	case (MULTI_FILE):
1566	{
1567	indexes -= firstGlobalIndex;
1568	SuperClassWriter::writeData(indexes, varId, isCollective, 0);
1569	break;
1570	}
1571	case (ONE_FILE):
1572	{
1573	std::vector<StdSize> start, count;
1574	start.push_back(offset);
1575	count.push_back(nbIndexes);
1576
1577	SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count);
1578	break;
1579	}
1580	}
1581	}
1582	}
1583	}
1584
1585	grid->addRelFileCompressed(this->filename);
1586	}
1587	catch (CNetCdfException& e)
1588	{
1589	StdString msg("On writing compressed grid : ");
1590	msg.append(grid->getId()); msg.append("\n");
1591	msg.append("In the context : ");
1592	CContext* context = CContext::getCurrent();
1593	msg.append(context->getId()); msg.append("\n");
1594	msg.append(e.what());
1595	ERROR("CNc4DataOutput::writeGridCompressed_(CGrid* grid)", << msg);
1596	}
1597	}
1598
1599	//--------------------------------------------------------------
1600
1601	void CNc4DataOutput::writeTimeDimension_(void)
1602	{
1603	try
1604	{
1605	SuperClassWriter::addDimension(getTimeCounterName());
1606	}
1607	catch (CNetCdfException& e)
1608	{
1609	StdString msg("On writing time dimension : time_couter\n");
1610	msg.append("In the context : ");
1611	CContext* context = CContext::getCurrent() ;
1612	msg.append(context->getId()); msg.append("\n");
1613	msg.append(e.what());
1614	ERROR("CNc4DataOutput::writeTimeDimension_(void)", << msg);
1615	}
1616	}
1617
1618	//--------------------------------------------------------------
1619
1620	void CNc4DataOutput::writeField_(CField* field)
1621	{
1622	CContext* context = CContext::getCurrent() ;
1623	CContextServer* server=context->server ;
1624
1625	std::vector<StdString> dims, coodinates;
1626	CGrid* grid = field->grid;
1627	if (!grid->doGridHaveDataToWrite())
1628	if (SuperClass::type==MULTI_FILE) return ;
1629
1630	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
1631	int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0;
1632	std::vector<StdString> domainList = grid->getDomainList();
1633	std::vector<StdString> axisList = grid->getAxisList();
1634	std::vector<StdString> scalarList = grid->getScalarList();
1635
1636	StdString timeid = getTimeCounterName();
1637	StdString dimXid,dimYid;
1638	std::deque<StdString> dimIdList, dimCoordList;
1639	bool hasArea = false;
1640	StdString cellMeasures = "area:";
1641	bool compressedOutput = !field->indexed_output.isEmpty() && field->indexed_output;
1642
1643	for (int i = 0; i < numElement; ++i)
1644	{
1645	if (2 == axisDomainOrder(i))
1646	{
1647	CDomain* domain = CDomain::get(domainList[idxDomain]);
1648	StdString domId = domain->getDomainOutputName();
1649	StdString appendDomId = singleDomain ? "" : "_" + domId ;
1650
1651	if (compressedOutput && domain->isCompressible() && domain->type != CDomain::type_attr::unstructured)
1652	{
1653	dimIdList.push_back(domId + "_points");
1654	field->setUseCompressedOutput();
1655	}
1656
1657	switch (domain->type)
1658	{
1659	case CDomain::type_attr::curvilinear:
1660	if (!compressedOutput \|\| !domain->isCompressible())
1661	{
1662	dimXid = StdString("x").append(appendDomId);
1663	dimIdList.push_back(dimXid);
1664	dimYid = StdString("y").append(appendDomId);
1665	dimIdList.push_back(dimYid);
1666	}
1667	dimCoordList.push_back(StdString("nav_lon").append(appendDomId));
1668	dimCoordList.push_back(StdString("nav_lat").append(appendDomId));
1669	break ;
1670	case CDomain::type_attr::rectilinear:
1671	if (!compressedOutput \|\| !domain->isCompressible())
1672	{
1673	dimXid = StdString("lon").append(appendDomId);
1674	dimIdList.push_back(dimXid);
1675	dimYid = StdString("lat").append(appendDomId);
1676	dimIdList.push_back(dimYid);
1677	}
1678	break ;
1679	case CDomain::type_attr::unstructured:
1680	{
1681	if (SuperClassWriter::useCFConvention)
1682	{
1683	dimXid = StdString("cell").append(appendDomId);
1684	dimIdList.push_back(dimXid);
1685	dimCoordList.push_back(StdString("lon").append(appendDomId));
1686	dimCoordList.push_back(StdString("lat").append(appendDomId));
1687	}
1688	else
1689	{
1690	StdString domainName = domain->name;
1691	if (domain->nvertex == 1)
1692	{
1693	dimXid = "n" + domainName + "_node";
1694	dimIdList.push_back(dimXid);
1695	dimCoordList.push_back(StdString(domainName + "_node_x"));
1696	dimCoordList.push_back(StdString(domainName + "_node_y"));
1697	}
1698	else if (domain->nvertex == 2)
1699	{
1700	dimXid = "n" + domainName + "_edge";
1701	dimIdList.push_back(dimXid);
1702	dimCoordList.push_back(StdString(domainName + "_edge_x"));
1703	dimCoordList.push_back(StdString(domainName + "_edge_y"));
1704	}
1705	else
1706	{
1707	dimXid = "n" + domainName + "_face";
1708	dimIdList.push_back(dimXid);
1709	dimCoordList.push_back(StdString(domainName + "_face_x"));
1710	dimCoordList.push_back(StdString(domainName + "_face_y"));
1711	}
1712	} // ugrid convention
1713	} // case unstructured domain
1714	}
1715
1716	if (domain->hasArea)
1717	{
1718	hasArea = true;
1719	cellMeasures += " area" + appendDomId;
1720	}
1721	++idxDomain;
1722	}
1723	else if (1 == axisDomainOrder(i))
1724	{
1725	CAxis* axis = CAxis::get(axisList[idxAxis]);
1726	StdString axisId = axis->getAxisOutputName();
1727
1728	if (compressedOutput && axis->isCompressible())
1729	{
1730	dimIdList.push_back(axisId + "_points");
1731	field->setUseCompressedOutput();
1732	}
1733	else
1734	dimIdList.push_back(axisId);
1735
1736	dimCoordList.push_back(axisId);
1737	++idxAxis;
1738	}
1739	else // scalar
1740	{
1741	/* Do nothing here */
1742	}
1743	}
1744
1745	StdString fieldid = field->getFieldOutputName();
1746
1747	nc_type type ;
1748	if (field->prec.isEmpty()) type = NC_FLOAT ;
1749	else
1750	{
1751	if (field->prec==2) type = NC_SHORT ;
1752	else if (field->prec==4) type = NC_FLOAT ;
1753	else if (field->prec==8) type = NC_DOUBLE ;
1754	}
1755
1756	bool wtime = !(!field->operation.isEmpty() && field->getOperationTimeType() == func::CFunctor::once);
1757
1758	if (wtime)
1759	{
1760	if (field->hasTimeInstant && hasTimeInstant) coodinates.push_back(string("time_instant"));
1761	else if (field->hasTimeCentered && hasTimeCentered) coodinates.push_back(string("time_centered"));
1762	dims.push_back(timeid);
1763	}
1764
1765	if (compressedOutput && grid->isCompressible())
1766	{
1767	dims.push_back(grid->getId() + "_points");
1768	field->setUseCompressedOutput();
1769	}
1770	else
1771	{
1772	while (!dimIdList.empty())
1773	{
1774	dims.push_back(dimIdList.back());
1775	dimIdList.pop_back();
1776	}
1777	}
1778
1779	while (!dimCoordList.empty())
1780	{
1781	coodinates.push_back(dimCoordList.back());
1782	dimCoordList.pop_back();
1783	}
1784
1785	try
1786	{
1787	SuperClassWriter::addVariable(fieldid, type, dims);
1788
1789	if (!field->standard_name.isEmpty())
1790	SuperClassWriter::addAttribute
1791	("standard_name", field->standard_name.getValue(), &fieldid);
1792
1793	if (!field->long_name.isEmpty())
1794	SuperClassWriter::addAttribute
1795	("long_name", field->long_name.getValue(), &fieldid);
1796
1797	if (!field->unit.isEmpty())
1798	SuperClassWriter::addAttribute
1799	("units", field->unit.getValue(), &fieldid);
1800
1801	// Ugrid field attributes "mesh" and "location"
1802	if (!SuperClassWriter::useCFConvention)
1803	{
1804	if (!domainList.empty())
1805	{
1806	CDomain* domain = CDomain::get(domainList[0]); // Suppose that we have only domain
1807	StdString mesh = domain->name;
1808	SuperClassWriter::addAttribute("mesh", mesh, &fieldid);
1809	StdString location;
1810	if (domain->nvertex == 1)
1811	location = "node";
1812	else if (domain->nvertex == 2)
1813	location = "edge";
1814	else if (domain->nvertex > 2)
1815	location = "face";
1816	SuperClassWriter::addAttribute("location", location, &fieldid);
1817	}
1818
1819	}
1820
1821	if (!field->valid_min.isEmpty())
1822	SuperClassWriter::addAttribute
1823	("valid_min", field->valid_min.getValue(), &fieldid);
1824
1825	if (!field->valid_max.isEmpty())
1826	SuperClassWriter::addAttribute
1827	("valid_max", field->valid_max.getValue(), &fieldid);
1828
1829	if (!field->scale_factor.isEmpty())
1830	SuperClassWriter::addAttribute
1831	("scale_factor", field->scale_factor.getValue(), &fieldid);
1832
1833	if (!field->add_offset.isEmpty())
1834	SuperClassWriter::addAttribute
1835	("add_offset", field->add_offset.getValue(), &fieldid);
1836
1837	SuperClassWriter::addAttribute
1838	("online_operation", field->operation.getValue(), &fieldid);
1839
1840	// write child variables as attributes
1841
1842
1843	bool alreadyAddCellMethod = false;
1844	StdString cellMethodsPrefix(""), cellMethodsSuffix("");
1845	if (!field->cell_methods.isEmpty())
1846	{
1847	StdString cellMethodString = field->cell_methods;
1848	if (field->cell_methods_mode.isEmpty() \|\|
1849	(CField::cell_methods_mode_attr::overwrite == field->cell_methods_mode))
1850	{
1851	SuperClassWriter::addAttribute("cell_methods", cellMethodString, &fieldid);
1852	alreadyAddCellMethod = true;
1853	}
1854	else
1855	{
1856	switch (field->cell_methods_mode)
1857	{
1858	case (CField::cell_methods_mode_attr::prefix):
1859	cellMethodsPrefix = cellMethodString;
1860	cellMethodsPrefix += " ";
1861	break;
1862	case (CField::cell_methods_mode_attr::suffix):
1863	cellMethodsSuffix = " ";
1864	cellMethodsSuffix += cellMethodString;
1865	break;
1866	case (CField::cell_methods_mode_attr::none):
1867	break;
1868	default:
1869	break;
1870	}
1871	}
1872	}
1873
1874
1875	if (wtime)
1876	{
1877	CDuration freqOp = field->freq_op.getValue();
1878	freqOp.solveTimeStep(*context->calendar);
1879	StdString freqOpStr = freqOp.toStringUDUnits();
1880	SuperClassWriter::addAttribute("interval_operation", freqOpStr, &fieldid);
1881
1882	CDuration freqOut = field->getRelFile()->output_freq.getValue();
1883	freqOut.solveTimeStep(*context->calendar);
1884	SuperClassWriter::addAttribute("interval_write", freqOut.toStringUDUnits(), &fieldid);
1885
1886	StdString cellMethods(cellMethodsPrefix + "time: ");
1887	if (field->operation.getValue() == "instant") cellMethods += "point";
1888	else if (field->operation.getValue() == "average") cellMethods += "mean";
1889	else if (field->operation.getValue() == "accumulate") cellMethods += "sum";
1890	else cellMethods += field->operation;
1891	if (freqOp.resolve(context->calendar) != freqOut.resolve(context->calendar))
1892	cellMethods += " (interval: " + freqOpStr + ")";
1893	cellMethods += cellMethodsSuffix;
1894	if (!alreadyAddCellMethod)
1895	SuperClassWriter::addAttribute("cell_methods", cellMethods, &fieldid);
1896	}
1897
1898	if (hasArea)
1899	SuperClassWriter::addAttribute("cell_measures", cellMeasures, &fieldid);
1900
1901	if (!field->default_value.isEmpty())
1902	{
1903	double default_value = field->default_value.getValue();
1904	float fdefault_value = (float)default_value;
1905	if (type == NC_DOUBLE)
1906	SuperClassWriter::setDefaultValue(fieldid, &default_value);
1907	else
1908	SuperClassWriter::setDefaultValue(fieldid, &fdefault_value);
1909	}
1910	else
1911	SuperClassWriter::setDefaultValue(fieldid, (double*)NULL);
1912
1913	if (field->compression_level.isEmpty())
1914	field->compression_level = field->file->compression_level.isEmpty() ? 0 : field->file->compression_level;
1915	SuperClassWriter::setCompressionLevel(fieldid, field->compression_level);
1916
1917	{ // Ecriture des coordonnes
1918
1919	StdString coordstr; //boost::algorithm::join(coodinates, " ")
1920	std::vector<StdString>::iterator
1921	itc = coodinates.begin(), endc = coodinates.end();
1922
1923	for (; itc!= endc; itc++)
1924	{
1925	StdString & coord = *itc;
1926	if (itc+1 != endc)
1927	coordstr.append(coord).append(" ");
1928	else coordstr.append(coord);
1929	}
1930
1931	SuperClassWriter::addAttribute("coordinates", coordstr, &fieldid);
1932
1933	}
1934
1935	vector<CVariable*> listVars = field->getAllVariables() ;
1936	for (vector<CVariable>::iterator it = listVars.begin() ;it != listVars.end(); it++) writeAttribute_(it, fieldid) ;
1937
1938	}
1939	catch (CNetCdfException& e)
1940	{
1941	StdString msg("On writing field : ");
1942	msg.append(fieldid); msg.append("\n");
1943	msg.append("In the context : ");
1944	msg.append(context->getId()); msg.append("\n");
1945	msg.append(e.what());
1946	ERROR("CNc4DataOutput::writeField_(CField* field)", << msg);
1947	}
1948	} // writeField_()
1949
1950	//--------------------------------------------------------------
1951
1952	void CNc4DataOutput::writeFile_ (CFile* file)
1953	{
1954	StdString filename = file->getFileOutputName();
1955	StdString description = (!file->description.isEmpty())
1956	? file->description.getValue()
1957	: StdString("Created by xios");
1958
1959	singleDomain = (file->nbDomains == 1);
1960
1961	StdString conv_str ;
1962	if (file->convention_str.isEmpty())
1963	{
1964	if (SuperClassWriter::useCFConvention) conv_str="CF-1.6" ;
1965	else conv_str="UGRID" ;
1966	}
1967	else conv_str=file->convention_str ;
1968
1969	try
1970	{
1971	this->writeFileAttributes(filename, description,
1972	conv_str,
1973	StdString("An IPSL model"),
1974	this->getTimeStamp());
1975
1976	if (!appendMode)
1977	SuperClassWriter::addDimension("axis_nbounds", 2);
1978	}
1979	catch (CNetCdfException& e)
1980	{
1981	StdString msg("On writing file : ");
1982	msg.append(filename); msg.append("\n");
1983	msg.append("In the context : ");
1984	CContext* context = CContext::getCurrent() ;
1985	msg.append(context->getId()); msg.append("\n");
1986	msg.append(e.what());
1987	ERROR("CNc4DataOutput::writeFile_ (CFile* file)", << msg);
1988	}
1989	}
1990
1991	void CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)
1992	{
1993	StdString name = var->getVariableOutputName();
1994
1995	try
1996	{
1997	if (var->type.getValue() == CVariable::type_attr::t_int \|\| var->type.getValue() == CVariable::type_attr::t_int32)
1998	addAttribute(name, var->getData<int>(), &fieldId);
1999	else if (var->type.getValue() == CVariable::type_attr::t_int16)
2000	addAttribute(name, var->getData<short int>(), &fieldId);
2001	else if (var->type.getValue() == CVariable::type_attr::t_float)
2002	addAttribute(name, var->getData<float>(), &fieldId);
2003	else if (var->type.getValue() == CVariable::type_attr::t_double)
2004	addAttribute(name, var->getData<double>(), &fieldId);
2005	else if (var->type.getValue() == CVariable::type_attr::t_string)
2006	addAttribute(name, var->getData<string>(), &fieldId);
2007	else
2008	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)",
2009	<< "Unsupported variable of type " << var->type.getStringValue());
2010	}
2011	catch (CNetCdfException& e)
2012	{
2013	StdString msg("On writing attributes of variable with name : ");
2014	msg.append(name); msg.append("in the field "); msg.append(fieldId); msg.append("\n");
2015	msg.append("In the context : ");
2016	CContext* context = CContext::getCurrent() ;
2017	msg.append(context->getId()); msg.append("\n");
2018	msg.append(e.what());
2019	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", << msg);
2020	}
2021	}
2022
2023	void CNc4DataOutput::writeAttribute_ (CVariable* var)
2024	{
2025	StdString name = var->getVariableOutputName();
2026
2027	try
2028	{
2029	if (var->type.getValue() == CVariable::type_attr::t_int \|\| var->type.getValue() == CVariable::type_attr::t_int32)
2030	addAttribute(name, var->getData<int>());
2031	else if (var->type.getValue() == CVariable::type_attr::t_int16)
2032	addAttribute(name, var->getData<short int>());
2033	else if (var->type.getValue() == CVariable::type_attr::t_float)
2034	addAttribute(name, var->getData<float>());
2035	else if (var->type.getValue() == CVariable::type_attr::t_double)
2036	addAttribute(name, var->getData<double>());
2037	else if (var->type.getValue() == CVariable::type_attr::t_string)
2038	addAttribute(name, var->getData<string>());
2039	else
2040	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)",
2041	<< "Unsupported variable of type " << var->type.getStringValue());
2042	}
2043	catch (CNetCdfException& e)
2044	{
2045	StdString msg("On writing attributes of variable with name : ");
2046	msg.append(name); msg.append("\n");
2047	msg.append("In the context : ");
2048	CContext* context = CContext::getCurrent() ;
2049	msg.append(context->getId()); msg.append("\n");
2050	msg.append(e.what());
2051	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", << msg);
2052	}
2053	}
2054
2055	void CNc4DataOutput::syncFile_ (void)
2056	{
2057	try
2058	{
2059	SuperClassWriter::sync() ;
2060	}
2061	catch (CNetCdfException& e)
2062	{
2063	StdString msg("On synchronizing the write among processes");
2064	msg.append("In the context : ");
2065	CContext* context = CContext::getCurrent() ;
2066	msg.append(context->getId()); msg.append("\n");
2067	msg.append(e.what());
2068	ERROR("CNc4DataOutput::syncFile_ (void)", << msg);
2069	}
2070	}
2071
2072	void CNc4DataOutput::closeFile_ (void)
2073	{
2074	try
2075	{
2076	SuperClassWriter::close() ;
2077	}
2078	catch (CNetCdfException& e)
2079	{
2080	StdString msg("On closing file");
2081	msg.append("In the context : ");
2082	CContext* context = CContext::getCurrent() ;
2083	msg.append(context->getId()); msg.append("\n");
2084	msg.append(e.what());
2085	ERROR("CNc4DataOutput::syncFile_ (void)", << msg);
2086	}
2087
2088	}
2089
2090	//---------------------------------------------------------------
2091
2092	StdString CNc4DataOutput::getTimeStamp(void) const
2093	{
2094	const int buffer_size = 100;
2095	time_t rawtime;
2096	struct tm * timeinfo = NULL;
2097	char buffer [buffer_size];
2098	StdString formatStr;
2099	if (file->time_stamp_format.isEmpty()) formatStr="%Y-%b-%d %H:%M:%S %Z" ;
2100	else formatStr=file->time_stamp_format;
2101
2102	// time ( &rawtime );
2103	// timeinfo = localtime ( &rawtime );
2104	time ( &rawtime );
2105	timeinfo = gmtime ( &rawtime );
2106	strftime (buffer, buffer_size, formatStr.c_str(), timeinfo);
2107
2108	return (StdString(buffer));
2109	}
2110
2111	//---------------------------------------------------------------
2112
2113	void CNc4DataOutput::writeFieldData_ (CField* field)
2114	{
2115	CContext* context = CContext::getCurrent();
2116	CContextServer* server = context->server;
2117	CGrid* grid = field->grid;
2118
2119	if (field->getNStep()<1)
2120	{
2121	return;
2122	}
2123
2124	if (!grid->doGridHaveDataToWrite())
2125	if (SuperClass::type == MULTI_FILE \|\| !isCollective)
2126	{
2127	return;
2128	}
2129
2130	StdString fieldid = field->getFieldOutputName();
2131
2132	StdOStringStream oss;
2133	string timeAxisId;
2134	if (field->hasTimeInstant) timeAxisId = "time_instant";
2135	else if (field->hasTimeCentered) timeAxisId = "time_centered";
2136
2137	StdString timeBoundId = getTimeCounterName() + "_bounds";
2138
2139	StdString timeAxisBoundId;
2140	if (field->hasTimeInstant) timeAxisBoundId = "time_instant_bounds";
2141	else if (field->hasTimeCentered) timeAxisBoundId = "time_centered_bounds";
2142
2143	if (!field->wasWritten())
2144	{
2145	if (appendMode && field->file->record_offset.isEmpty() &&
2146	field->getOperationTimeType() != func::CFunctor::once)
2147	{
2148	double factorUnit;
2149	if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days)
2150	factorUnit=context->getCalendar()->getDayLengthInSeconds() ;
2151	else factorUnit=1 ;
2152	field->resetNStep(getRecordFromTime(field->last_Write_srv,factorUnit) + 1);
2153	}
2154
2155	field->setWritten();
2156	}
2157
2158
2159	CArray<double,1> time_data(1);
2160	CArray<double,1> time_data_bound(2);
2161	CArray<double,1> time_counter(1);
2162	CArray<double,1> time_counter_bound(2);
2163
2164	bool wtime = (field->getOperationTimeType() != func::CFunctor::once);
2165	bool wtimeCounter =false ;
2166	bool wtimeData =false ;
2167
2168
2169	if (wtime)
2170	{
2171	Time lastWrite = field->last_Write_srv;
2172	Time lastLastWrite = field->lastlast_Write_srv;
2173
2174
2175	if (field->hasTimeInstant)
2176	{
2177	time_data(0) = time_data_bound(1) = lastWrite;
2178	time_data_bound(0) = time_data_bound(1) = lastWrite;
2179	if (timeCounterType==instant)
2180	{
2181	time_counter(0) = time_data(0);
2182	time_counter_bound(0) = time_data_bound(0);
2183	time_counter_bound(1) = time_data_bound(1);
2184	wtimeCounter=true ;
2185	}
2186	if (hasTimeInstant) wtimeData=true ;
2187	}
2188	else if (field->hasTimeCentered)
2189	{
2190	time_data(0) = (lastWrite + lastLastWrite) / 2;
2191	time_data_bound(0) = lastLastWrite;
2192	time_data_bound(1) = lastWrite;
2193	if (timeCounterType==centered)
2194	{
2195	time_counter(0) = time_data(0) ;
2196	time_counter_bound(0) = time_data_bound(0) ;
2197	time_counter_bound(1) = time_data_bound(1) ;
2198	wtimeCounter=true ;
2199	}
2200	if (hasTimeCentered) wtimeData=true ;
2201	}
2202
2203	if (timeCounterType==record)
2204	{
2205	time_counter(0) = field->getNStep() - 1;
2206	time_counter_bound(0) = time_counter_bound(1) = field->getNStep() - 1;
2207	wtimeCounter=true ;
2208	}
2209
2210	if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days)
2211	{
2212	double secByDay=context->getCalendar()->getDayLengthInSeconds() ;
2213	time_data/=secByDay;
2214	time_data_bound/=secByDay;
2215	time_counter/=secByDay;
2216	time_counter_bound/=secByDay;
2217	}
2218	}
2219
2220	bool isRoot = (server->intraCommRank == 0);
2221
2222	if (!field->scale_factor.isEmpty() \|\| !field->add_offset.isEmpty())
2223	{
2224	double scaleFactor = 1.0;
2225	double addOffset = 0.0;
2226	if (!field->scale_factor.isEmpty()) scaleFactor = field->scale_factor;
2227	if (!field->add_offset.isEmpty()) addOffset = field->add_offset;
2228	field->scaleFactorAddOffset(scaleFactor, addOffset);
2229	}
2230
2231	try
2232	{
2233	size_t writtenSize;
2234	if (field->getUseCompressedOutput())
2235	writtenSize = grid->getNumberWrittenIndexes();
2236	else
2237	writtenSize = grid->getWrittenDataSize();
2238
2239	CArray<double,1> fieldData(writtenSize);
2240	if (!field->default_value.isEmpty()) fieldData = field->default_value;
2241
2242	if (field->getUseCompressedOutput())
2243	field->outputCompressedField(fieldData);
2244	else
2245	field->outputField(fieldData);
2246
2247	if (!field->prec.isEmpty() && field->prec == 2) fieldData = round(fieldData);
2248
2249	switch (SuperClass::type)
2250	{
2251	case (MULTI_FILE) :
2252	{
2253	CTimer::get("Files : writing data").resume();
2254	SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1);
2255	CTimer::get("Files : writing data").suspend();
2256	if (wtime)
2257	{
2258	CTimer::get("Files : writing time axis").resume();
2259	if ( wtimeData)
2260	{
2261	// SuperClassWriter::writeData(time_data, timeAxisId, isCollective, field->getNStep() - 1);
2262	// SuperClassWriter::writeData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1);
2263	SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot);
2264	SuperClassWriter::writeTimeAxisDataBounds(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot);
2265	}
2266	if (wtimeCounter)
2267	{
2268	// SuperClassWriter::writeData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1);
2269	// if (timeCounterType!=record) SuperClassWriter::writeData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1);
2270	SuperClassWriter::writeTimeAxisData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1,isRoot);
2271	if (timeCounterType!=record) SuperClassWriter::writeTimeAxisDataBounds(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot);
2272	}
2273	CTimer::get("Files : writing time axis").suspend();
2274	}
2275	break;
2276	}
2277	case (ONE_FILE) :
2278	{
2279	const std::vector<int>& nZoomBeginGlobal = grid->getDistributionServer()->getZoomBeginGlobal();
2280	const std::vector<int>& nZoomBeginServer = grid->getDistributionServer()->getZoomBeginServer();
2281	const std::vector<int>& nZoomSizeServer = grid->getDistributionServer()->getZoomSizeServer();
2282
2283	std::vector<StdSize> start, count;
2284
2285	if (field->getUseCompressedOutput())
2286	{
2287	if (grid->isCompressible())
2288	{
2289	start.push_back(grid->getOffsetWrittenIndexes());
2290	count.push_back(grid->getNumberWrittenIndexes());
2291	}
2292	else
2293	{
2294	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
2295	std::vector<StdString> domainList = grid->getDomainList();
2296	std::vector<StdString> axisList = grid->getAxisList();
2297	int numElement = axisDomainOrder.numElements();
2298	int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1;
2299	int idx = nZoomBeginGlobal.size() - 1;
2300
2301	start.reserve(nZoomBeginGlobal.size());
2302	count.reserve(nZoomBeginGlobal.size());
2303
2304
2305	for (int i = numElement - 1; i >= 0; --i)
2306	{
2307	if (2 == axisDomainOrder(i))
2308	{
2309	CDomain* domain = CDomain::get(domainList[idxDomain]);
2310
2311	if (domain->isCompressible())
2312	{
2313	start.push_back(domain->getOffsetWrittenIndexes(comm_file));
2314	count.push_back(domain->getNumberWrittenIndexes(comm_file));
2315	idx -= 2;
2316	}
2317	else
2318	{
2319	if ((domain->type) != CDomain::type_attr::unstructured)
2320	{
2321	start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2322	count.push_back(nZoomSizeServer[idx]);
2323	}
2324	--idx;
2325	start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2326	count.push_back(nZoomSizeServer[idx]);
2327	--idx;
2328	}
2329	--idxDomain;
2330	}
2331	else if (1 == axisDomainOrder(i))
2332	{
2333	CAxis* axis = CAxis::get(axisList[idxAxis]);
2334
2335	if (axis->isCompressible())
2336	{
2337	start.push_back(axis->getOffsetWrittenIndexes(comm_file));
2338	count.push_back(axis->getNumberWrittenIndexes(comm_file));
2339	}
2340	else
2341	{
2342	start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2343	count.push_back(nZoomSizeServer[idx]);
2344	}
2345
2346	--idxAxis;
2347	--idx;
2348	}
2349	}
2350	}
2351	}
2352	else
2353	{
2354	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
2355	std::vector<StdString> domainList = grid->getDomainList();
2356	std::vector<StdString> axisList = grid->getAxisList();
2357	int numElement = axisDomainOrder.numElements();
2358	int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1;
2359	int idx = domainList.size() * 2 + axisList.size() - 1;// nZoomBeginGlobal.size() - 1;
2360
2361	start.reserve(nZoomBeginGlobal.size());
2362	count.reserve(nZoomBeginGlobal.size());
2363
2364	for (int i = numElement - 1; i >= 0; --i)
2365	{
2366	if (2 == axisDomainOrder(i))
2367	{
2368	CDomain* domain = CDomain::get(domainList[idxDomain]);
2369	if ((domain->type) != CDomain::type_attr::unstructured)
2370	{
2371	start.push_back(domain->zoom_jbegin - domain->global_zoom_jbegin);
2372	count.push_back(domain->zoom_nj);
2373	}
2374	--idx ;
2375
2376	start.push_back(domain->zoom_ibegin - domain->global_zoom_ibegin);
2377	count.push_back(domain->zoom_ni);
2378	--idx ;
2379	--idxDomain;
2380	}
2381	else if (1 == axisDomainOrder(i))
2382	{
2383	CAxis* axis = CAxis::get(axisList[idxAxis]);
2384	start.push_back(axis->zoom_begin - axis->global_zoom_begin);
2385	count.push_back(axis->zoom_n);
2386	--idx;
2387	--idxAxis;
2388	}
2389	else
2390	{
2391	if (1 == axisDomainOrder.numElements())
2392	{
2393	start.push_back(0);
2394	count.push_back(1);
2395	}
2396	--idx;
2397	}
2398	}
2399	}
2400
2401
2402	CTimer::get("Files : writing data").resume();
2403	SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1, &start, &count);
2404	CTimer::get("Files : writing data").suspend();
2405
2406	if (wtime)
2407	{
2408	CTimer::get("Files : writing time axis").resume();
2409	if ( wtimeData)
2410	{
2411	// SuperClassWriter::writeData(time_data, timeAxisId, isCollective, field->getNStep() - 1);
2412	// SuperClassWriter::writeData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1);
2413	SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot);
2414	SuperClassWriter::writeTimeAxisDataBounds(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot);
2415	}
2416	if (wtimeCounter)
2417	{
2418	// SuperClassWriter::writeData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1);
2419	// if (timeCounterType!=record) SuperClassWriter::writeData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1);
2420	SuperClassWriter::writeTimeAxisData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1,isRoot);
2421	if (timeCounterType!=record) SuperClassWriter::writeTimeAxisDataBounds(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot);
2422
2423	}
2424	CTimer::get("Files : writing time axis").suspend();
2425	}
2426
2427	break;
2428	}
2429	}
2430	}
2431	catch (CNetCdfException& e)
2432	{
2433	StdString msg("On writing field data: ");
2434	msg.append(fieldid); msg.append("\n");
2435	msg.append("In the context : ");
2436	msg.append(context->getId()); msg.append("\n");
2437	msg.append(e.what());
2438	ERROR("CNc4DataOutput::writeFieldData_ (CField* field)", << msg);
2439	}
2440	}
2441
2442	//---------------------------------------------------------------
2443
2444	void CNc4DataOutput::writeTimeAxis_
2445	(CField* field,
2446	const boost::shared_ptr<CCalendar> cal)
2447	{
2448	StdOStringStream oss;
2449	bool createInstantAxis=false ;
2450	bool createCenteredAxis=false ;
2451	bool createTimeCounterAxis=false ;
2452
2453	if (field->getOperationTimeType() == func::CFunctor::once) return ;
2454
2455
2456	StdString axisId ;
2457	StdString axisBoundId;
2458	StdString timeid(getTimeCounterName());
2459	StdString timeBoundId("axis_nbounds");
2460
2461	StdString strTimeUnits ;
2462	if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days) strTimeUnits="days since " ;
2463	else strTimeUnits="seconds since " ;
2464
2465	if (field->getOperationTimeType() == func::CFunctor::instant) field->hasTimeInstant = true;
2466	if (field->getOperationTimeType() == func::CFunctor::centered) field->hasTimeCentered = true;
2467
2468
2469	if (field->file->time_counter.isEmpty())
2470	{
2471	if (timeCounterType==none) createTimeCounterAxis=true ;
2472	if (field->hasTimeCentered)
2473	{
2474	timeCounterType=centered ;
2475	if (!hasTimeCentered) createCenteredAxis=true ;
2476	}
2477	if (field->hasTimeInstant)
2478	{
2479	if (timeCounterType==none) timeCounterType=instant ;
2480	if (!hasTimeInstant) createInstantAxis=true ;
2481	}
2482	}
2483	else if (field->file->time_counter==CFile::time_counter_attr::instant)
2484	{
2485	if (field->hasTimeCentered)
2486	{
2487	if (!hasTimeCentered) createCenteredAxis=true ;
2488	}
2489	if (field->hasTimeInstant)
2490	{
2491	if (timeCounterType==none) createTimeCounterAxis=true ;
2492	timeCounterType=instant ;
2493	if (!hasTimeInstant) createInstantAxis=true ;
2494	}
2495	}
2496	else if (field->file->time_counter==CFile::time_counter_attr::centered)
2497	{
2498	if (field->hasTimeCentered)
2499	{
2500	if (timeCounterType==none) createTimeCounterAxis=true ;
2501	timeCounterType=centered ;
2502	if (!hasTimeCentered) createCenteredAxis=true ;
2503	}
2504	if (field->hasTimeInstant)
2505	{
2506	if (!hasTimeInstant) createInstantAxis=true ;
2507	}
2508	}
2509	else if (field->file->time_counter==CFile::time_counter_attr::instant_exclusive)
2510	{
2511	if (field->hasTimeCentered)
2512	{
2513	if (!hasTimeCentered) createCenteredAxis=true ;
2514	}
2515	if (field->hasTimeInstant)
2516	{
2517	if (timeCounterType==none) createTimeCounterAxis=true ;
2518	timeCounterType=instant ;
2519	}
2520	}
2521	else if (field->file->time_counter==CFile::time_counter_attr::centered_exclusive)
2522	{
2523	if (field->hasTimeCentered)
2524	{
2525	if (timeCounterType==none) createTimeCounterAxis=true ;
2526	timeCounterType=centered ;
2527	}
2528	if (field->hasTimeInstant)
2529	{
2530	if (!hasTimeInstant) createInstantAxis=true ;
2531	}
2532	}
2533	else if (field->file->time_counter==CFile::time_counter_attr::exclusive)
2534	{
2535	if (field->hasTimeCentered)
2536	{
2537	if (timeCounterType==none) createTimeCounterAxis=true ;
2538	if (timeCounterType==instant) createInstantAxis=true ;
2539	timeCounterType=centered ;
2540	}
2541	if (field->hasTimeInstant)
2542	{
2543	if (timeCounterType==none)
2544	{
2545	createTimeCounterAxis=true ;
2546	timeCounterType=instant ;
2547	}
2548	if (timeCounterType==centered)
2549	{
2550	if (!hasTimeInstant) createInstantAxis=true ;
2551	}
2552	}
2553	}
2554	else if (field->file->time_counter==CFile::time_counter_attr::none)
2555	{
2556	if (field->hasTimeCentered)
2557	{
2558	if (!hasTimeCentered) createCenteredAxis=true ;
2559	}
2560	if (field->hasTimeInstant)
2561	{
2562	if (!hasTimeInstant) createInstantAxis=true ;
2563	}
2564	}
2565	else if (field->file->time_counter==CFile::time_counter_attr::record)
2566	{
2567	if (timeCounterType==none) createTimeCounterAxis=true ;
2568	timeCounterType=record ;
2569	if (field->hasTimeCentered)
2570	{
2571	if (!hasTimeCentered) createCenteredAxis=true ;
2572	}
2573	if (field->hasTimeInstant)
2574	{
2575	if (!hasTimeInstant) createInstantAxis=true ;
2576	}
2577	}
2578
2579	if (createInstantAxis)
2580	{
2581	axisId="time_instant" ;
2582	axisBoundId="time_instant_bounds";
2583	hasTimeInstant=true ;
2584	}
2585
2586	if (createCenteredAxis)
2587	{
2588	axisId="time_centered" ;
2589	axisBoundId="time_centered_bounds";
2590	hasTimeCentered=true ;
2591	}
2592
2593
2594	try
2595	{
2596	std::vector<StdString> dims;
2597
2598	if (createInstantAxis \|\| createCenteredAxis)
2599	{
2600	// Adding time_instant or time_centered
2601	dims.push_back(timeid);
2602	if (!SuperClassWriter::varExist(axisId))
2603	{
2604	SuperClassWriter::addVariable(axisId, NC_DOUBLE, dims);
2605
2606	CDate timeOrigin=cal->getTimeOrigin() ;
2607	StdOStringStream oss2;
2608	StdString strInitdate=oss2.str() ;
2609	StdString strTimeOrigin=timeOrigin.toString() ;
2610	this->writeTimeAxisAttributes(axisId, cal->getType(),strTimeUnits+strTimeOrigin,
2611	strTimeOrigin, axisBoundId);
2612	}
2613
2614	// Adding time_instant_bounds or time_centered_bounds variables
2615	if (!SuperClassWriter::varExist(axisBoundId))
2616	{
2617	dims.clear() ;
2618	dims.push_back(timeid);
2619	dims.push_back(timeBoundId);
2620	SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims);
2621	}
2622	}
2623
2624	if (createTimeCounterAxis)
2625	{
2626	// Adding time_counter
2627	axisId = getTimeCounterName();
2628	axisBoundId = getTimeCounterName() + "_bounds";
2629	dims.clear();
2630	dims.push_back(timeid);
2631	if (!SuperClassWriter::varExist(axisId))
2632	{
2633	SuperClassWriter::addVariable(axisId, NC_DOUBLE, dims);
2634	SuperClassWriter::addAttribute("axis", string("T"), &axisId);
2635
2636	if (field->file->time_counter.isEmpty() \|\|
2637	(field->file->time_counter != CFile::time_counter_attr::record))
2638	{
2639	CDate timeOrigin = cal->getTimeOrigin();
2640	StdString strTimeOrigin = timeOrigin.toString();
2641
2642	this->writeTimeAxisAttributes(axisId, cal->getType(),
2643	strTimeUnits+strTimeOrigin,
2644	strTimeOrigin, axisBoundId);
2645	}
2646	}
2647
2648	// Adding time_counter_bound dimension
2649	if (field->file->time_counter.isEmpty() \|\| (field->file->time_counter != CFile::time_counter_attr::record))
2650	{
2651	if (!SuperClassWriter::varExist(axisBoundId))
2652	{
2653	dims.clear();
2654	dims.push_back(timeid);
2655	dims.push_back(timeBoundId);
2656	SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims);
2657	}
2658	}
2659	}
2660	}
2661	catch (CNetCdfException& e)
2662	{
2663	StdString msg("On writing time axis data: ");
2664	msg.append("In the context : ");
2665	CContext* context = CContext::getCurrent() ;
2666	msg.append(context->getId()); msg.append("\n");
2667	msg.append(e.what());
2668	ERROR("CNc4DataOutput::writeTimeAxis_ (CField* field, \
2669	const boost::shared_ptr<CCalendar> cal)", << msg);
2670	}
2671	}
2672
2673	//---------------------------------------------------------------
2674
2675	void CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name,
2676	const StdString & calendar,
2677	const StdString & units,
2678	const StdString & time_origin,
2679	const StdString & time_bounds,
2680	const StdString & standard_name,
2681	const StdString & long_name)
2682	{
2683	try
2684	{
2685	SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name);
2686	SuperClassWriter::addAttribute("long_name", long_name , &axis_name);
2687	SuperClassWriter::addAttribute("calendar", calendar , &axis_name);
2688	SuperClassWriter::addAttribute("units", units , &axis_name);
2689	SuperClassWriter::addAttribute("time_origin", time_origin , &axis_name);
2690	SuperClassWriter::addAttribute("bounds", time_bounds , &axis_name);
2691	}
2692	catch (CNetCdfException& e)
2693	{
2694	StdString msg("On writing time axis Attribute: ");
2695	msg.append("In the context : ");
2696	CContext* context = CContext::getCurrent() ;
2697	msg.append(context->getId()); msg.append("\n");
2698	msg.append(e.what());
2699	ERROR("CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, \
2700	const StdString & calendar,\
2701	const StdString & units, \
2702	const StdString & time_origin, \
2703	const StdString & time_bounds, \
2704	const StdString & standard_name, \
2705	const StdString & long_name)", << msg);
2706	}
2707	}
2708
2709	//---------------------------------------------------------------
2710
2711	void CNc4DataOutput::writeAxisAttributes(const StdString & axis_name,
2712	const StdString & axis,
2713	const StdString & standard_name,
2714	const StdString & long_name,
2715	const StdString & units,
2716	const StdString & nav_model)
2717	{
2718	try
2719	{
2720	if (!axis.empty())
2721	SuperClassWriter::addAttribute("axis" , axis , &axis_name);
2722
2723	SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name);
2724	SuperClassWriter::addAttribute("long_name" , long_name , &axis_name);
2725	SuperClassWriter::addAttribute("units" , units , &axis_name);
2726	// SuperClassWriter::addAttribute("nav_model" , nav_model , &axis_name);
2727	}
2728	catch (CNetCdfException& e)
2729	{
2730	StdString msg("On writing Axis Attribute: ");
2731	msg.append("In the context : ");
2732	CContext* context = CContext::getCurrent() ;
2733	msg.append(context->getId()); msg.append("\n");
2734	msg.append(e.what());
2735	ERROR("CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, \
2736	const StdString & axis, \
2737	const StdString & standard_name, \
2738	const StdString & long_name, \
2739	const StdString & units, \
2740	const StdString & nav_model)", << msg);
2741	}
2742	}
2743
2744	//---------------------------------------------------------------
2745
2746	void CNc4DataOutput::writeLocalAttributes
2747	(int ibegin, int ni, int jbegin, int nj, StdString domid)
2748	{
2749	try
2750	{
2751	SuperClassWriter::addAttribute(StdString("ibegin").append(domid), ibegin);
2752	SuperClassWriter::addAttribute(StdString("ni" ).append(domid), ni);
2753	SuperClassWriter::addAttribute(StdString("jbegin").append(domid), jbegin);
2754	SuperClassWriter::addAttribute(StdString("nj" ).append(domid), nj);
2755	}
2756	catch (CNetCdfException& e)
2757	{
2758	StdString msg("On writing Local Attributes: ");
2759	msg.append("In the context : ");
2760	CContext* context = CContext::getCurrent() ;
2761	msg.append(context->getId()); msg.append("\n");
2762	msg.append(e.what());
2763	ERROR("CNc4DataOutput::writeLocalAttributes \
2764	(int ibegin, int ni, int jbegin, int nj, StdString domid)", << msg);
2765	}
2766
2767	}
2768
2769	void CNc4DataOutput::writeLocalAttributes_IOIPSL(const StdString& dimXid, const StdString& dimYid,
2770	int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)
2771	{
2772	CArray<int,1> array(2) ;
2773
2774	try
2775	{
2776	SuperClassWriter::addAttribute("DOMAIN_number_total",size ) ;
2777	SuperClassWriter::addAttribute("DOMAIN_number", rank) ;
2778	array = SuperClassWriter::getDimension(dimXid) + 1, SuperClassWriter::getDimension(dimYid) + 1;
2779	SuperClassWriter::addAttribute("DOMAIN_dimensions_ids",array) ;
2780	array=ni_glo,nj_glo ;
2781	SuperClassWriter::addAttribute("DOMAIN_size_global", array) ;
2782	array=ni,nj ;
2783	SuperClassWriter::addAttribute("DOMAIN_size_local", array) ;
2784	array=ibegin+1,jbegin+1 ;
2785	SuperClassWriter::addAttribute("DOMAIN_position_first", array) ;
2786	array=ibegin+ni-1+1,jbegin+nj-1+1 ;
2787	SuperClassWriter::addAttribute("DOMAIN_position_last",array) ;
2788	array=0,0 ;
2789	SuperClassWriter::addAttribute("DOMAIN_halo_size_start", array) ;
2790	SuperClassWriter::addAttribute("DOMAIN_halo_size_end", array);
2791	SuperClassWriter::addAttribute("DOMAIN_type",string("box")) ;
2792	/*
2793	SuperClassWriter::addAttribute("DOMAIN_DIM_N001",string("x")) ;
2794	SuperClassWriter::addAttribute("DOMAIN_DIM_N002",string("y")) ;
2795	SuperClassWriter::addAttribute("DOMAIN_DIM_N003",string("axis_A")) ;
2796	SuperClassWriter::addAttribute("DOMAIN_DIM_N004",string("time_counter")) ;
2797	*/
2798	}
2799	catch (CNetCdfException& e)
2800	{
2801	StdString msg("On writing Local Attributes IOIPSL \n");
2802	msg.append("In the context : ");
2803	CContext* context = CContext::getCurrent() ;
2804	msg.append(context->getId()); msg.append("\n");
2805	msg.append(e.what());
2806	ERROR("CNc4DataOutput::writeLocalAttributes_IOIPSL \
2807	(int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)", << msg);
2808	}
2809	}
2810	//---------------------------------------------------------------
2811
2812	void CNc4DataOutput:: writeFileAttributes(const StdString & name,
2813	const StdString & description,
2814	const StdString & conventions,
2815	const StdString & production,
2816	const StdString & timeStamp)
2817	{
2818	try
2819	{
2820	SuperClassWriter::addAttribute("name" , name);
2821	SuperClassWriter::addAttribute("description", description);
2822	SuperClassWriter::addAttribute("title" , description);
2823	SuperClassWriter::addAttribute("Conventions", conventions);
2824	// SuperClassWriter::addAttribute("production" , production);
2825
2826	StdString timeStampStr ;
2827	if (file->time_stamp_name.isEmpty()) timeStampStr="timeStamp" ;
2828	else timeStampStr=file->time_stamp_name ;
2829	SuperClassWriter::addAttribute(timeStampStr, timeStamp);
2830
2831	StdString uuidName ;
2832	if (file->uuid_name.isEmpty()) uuidName="uuid" ;
2833	else uuidName=file->uuid_name ;
2834
2835	if (file->uuid_format.isEmpty()) SuperClassWriter::addAttribute(uuidName, getUuidStr());
2836	else SuperClassWriter::addAttribute(uuidName, getUuidStr(file->uuid_format));
2837
2838	}
2839	catch (CNetCdfException& e)
2840	{
2841	StdString msg("On writing File Attributes \n ");
2842	msg.append("In the context : ");
2843	CContext* context = CContext::getCurrent() ;
2844	msg.append(context->getId()); msg.append("\n");
2845	msg.append(e.what());
2846	ERROR("CNc4DataOutput:: writeFileAttributes(const StdString & name, \
2847	const StdString & description, \
2848	const StdString & conventions, \
2849	const StdString & production, \
2850	const StdString & timeStamp)", << msg);
2851	}
2852	}
2853
2854	//---------------------------------------------------------------
2855
2856	void CNc4DataOutput::writeMaskAttributes(const StdString & mask_name,
2857	int data_dim,
2858	int data_ni,
2859	int data_nj,
2860	int data_ibegin,
2861	int data_jbegin)
2862	{
2863	try
2864	{
2865	SuperClassWriter::addAttribute("data_dim" , data_dim , &mask_name);
2866	SuperClassWriter::addAttribute("data_ni" , data_ni , &mask_name);
2867	SuperClassWriter::addAttribute("data_nj" , data_nj , &mask_name);
2868	SuperClassWriter::addAttribute("data_ibegin", data_ibegin, &mask_name);
2869	SuperClassWriter::addAttribute("data_jbegin", data_jbegin, &mask_name);
2870	}
2871	catch (CNetCdfException& e)
2872	{
2873	StdString msg("On writing Mask Attributes \n ");
2874	msg.append("In the context : ");
2875	CContext* context = CContext::getCurrent() ;
2876	msg.append(context->getId()); msg.append("\n");
2877	msg.append(e.what());
2878	ERROR("CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, \
2879	int data_dim, \
2880	int data_ni, \
2881	int data_nj, \
2882	int data_ibegin, \
2883	int data_jbegin)", << msg);
2884	}
2885	}
2886
2887	///--------------------------------------------------------------
2888
2889	StdSize CNc4DataOutput::getRecordFromTime(Time time, double factorUnit)
2890	{
2891	std::map<Time, StdSize>::const_iterator it = timeToRecordCache.find(time);
2892	if (it == timeToRecordCache.end())
2893	{
2894	StdString timeAxisBoundsId(getTimeCounterName() + "_bounds");
2895	if (!SuperClassWriter::varExist(timeAxisBoundsId)) timeAxisBoundsId = "time_centered_bounds";
2896	if (!SuperClassWriter::varExist(timeAxisBoundsId)) timeAxisBoundsId = "time_instant_bounds";
2897
2898	CArray<double,2> timeAxisBounds;
2899	std::vector<StdSize> dimSize(SuperClassWriter::getDimensions(timeAxisBoundsId)) ;
2900
2901	StdSize record = 0;
2902	double dtime(time);
2903	for (int n = dimSize[0] - 1; n >= 0; n--)
2904	{
2905	SuperClassWriter::getTimeAxisBounds(timeAxisBounds, timeAxisBoundsId, isCollective, n);
2906	timeAxisBounds*=factorUnit ;
2907	if (timeAxisBounds(1, 0) < dtime)
2908	{
2909	record = n + 1;
2910	break;
2911	}
2912	}
2913	it = timeToRecordCache.insert(std::make_pair(time, record)).first;
2914	}
2915	return it->second;
2916	}
2917
2918	///--------------------------------------------------------------
2919
2920	bool CNc4DataOutput::isWrittenDomain(const std::string& domainName) const
2921	{
2922	return (this->writtenDomains.find(domainName) != this->writtenDomains.end());
2923	}
2924
2925	bool CNc4DataOutput::isWrittenCompressedDomain(const std::string& domainName) const
2926	{
2927	return (this->writtenCompressedDomains.find(domainName) != this->writtenCompressedDomains.end());
2928	}
2929
2930	bool CNc4DataOutput::isWrittenAxis(const std::string& axisName) const
2931	{
2932	return (this->writtenAxis.find(axisName) != this->writtenAxis.end());
2933	}
2934
2935	bool CNc4DataOutput::isWrittenCompressedAxis(const std::string& axisName) const
2936	{
2937	return (this->writtenCompressedAxis.find(axisName) != this->writtenCompressedAxis.end());
2938	}
2939
2940	bool CNc4DataOutput::isWrittenScalar(const std::string& scalarName) const
2941	{
2942	return (this->writtenScalar.find(scalarName) != this->writtenScalar.end());
2943	}
2944
2945	void CNc4DataOutput::setWrittenDomain(const std::string& domainName)
2946	{
2947	this->writtenDomains.insert(domainName);
2948	}
2949
2950	void CNc4DataOutput::setWrittenCompressedDomain(const std::string& domainName)
2951	{
2952	this->writtenCompressedDomains.insert(domainName);
2953	}
2954
2955	void CNc4DataOutput::setWrittenAxis(const std::string& axisName)
2956	{
2957	this->writtenAxis.insert(axisName);
2958	}
2959
2960	void CNc4DataOutput::setWrittenCompressedAxis(const std::string& axisName)
2961	{
2962	this->writtenCompressedAxis.insert(axisName);
2963	}
2964
2965	void CNc4DataOutput::setWrittenScalar(const std::string& scalarName)
2966	{
2967	this->writtenScalar.insert(scalarName);
2968	}
2969	} // namespace xios

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