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source: XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_output.cpp @ 1333

Last change on this file since 1333 was 1333, checked in by oabramkina, 6 years ago
Very minor correction of r1332.
Property copyright set to Software name : XIOS (Xml I/O Server) http://forge.ipsl.jussieu.fr/ioserver Creation date : January 2009 Licence : CeCCIL version2 see license file in root directory : Licence_CeCILL_V2-en.txt or http://www.cecill.info/licences/Licence_CeCILL_V2-en.html Holder : CEA/LSCE (Laboratoire des Sciences du CLimat et de l'Environnement) CNRS/IPSL (Institut Pierre Simon Laplace) Project Manager : Yann Meurdesoif yann.meurdesoif@cea.fr Property svn:executable set to ``*
File size: 126.8 KB

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1	#include "nc4_data_output.hpp"
2
3	#include <boost/lexical_cast.hpp>
4	#include "attribute_template.hpp"
5	#include "group_template.hpp"
6
7	#include "file.hpp"
8	#include "calendar.hpp"
9	#include "context.hpp"
10	#include "context_server.hpp"
11	#include "netCdfException.hpp"
12	#include "exception.hpp"
13	#include "timer.hpp"
14	#include "uuid.hpp"
15	namespace xios
16	{
17	/// ////////////////////// Dfinitions ////////////////////// ///
18	CNc4DataOutput::CNc4DataOutput
19	(CFile* file, const StdString & filename, bool exist)
20	: SuperClass()
21	, SuperClassWriter(filename, exist)
22	, filename(filename)
23	, file(file),hasTimeInstant(false),hasTimeCentered(false), timeCounterType(none)
24	{
25	SuperClass::type = MULTI_FILE;
26	}
27
28	CNc4DataOutput::CNc4DataOutput
29	(CFile* file, const StdString & filename, bool exist, bool useClassicFormat, bool useCFConvention,
30	MPI_Comm comm_file, bool multifile, bool isCollective, const StdString& timeCounterName)
31	: SuperClass()
32	, SuperClassWriter(filename, exist, useClassicFormat, useCFConvention, &comm_file, multifile, timeCounterName)
33	, comm_file(comm_file)
34	, filename(filename)
35	, isCollective(isCollective)
36	, file(file),hasTimeInstant(false),hasTimeCentered(false), timeCounterType(none)
37	{
38	SuperClass::type = (multifile) ? MULTI_FILE : ONE_FILE;
39	}
40
41	CNc4DataOutput::~CNc4DataOutput(void)
42	{ /* Ne rien faire de plus */ }
43
44	///--------------------------------------------------------------
45
46	const StdString & CNc4DataOutput::getFileName(void) const
47	{
48	return (this->filename);
49	}
50
51	//---------------------------------------------------------------
52
53	void CNc4DataOutput::writeDomain_(CDomain* domain)
54	{
55	domain->computeWrittenIndex();
56	domain->computeWrittenCompressedIndex(comm_file);
57
58	if (domain->type == CDomain::type_attr::unstructured)
59	{
60	if (SuperClassWriter::useCFConvention)
61	writeUnstructuredDomain(domain) ;
62	else
63	writeUnstructuredDomainUgrid(domain) ;
64	return ;
65	}
66
67	CContext* context = CContext::getCurrent() ;
68	CContextServer* server=context->server ;
69
70	if (domain->IsWritten(this->filename)) return;
71	domain->checkAttributes();
72
73	if (domain->isEmpty())
74	if (SuperClass::type==MULTI_FILE) return;
75
76	std::vector<StdString> dim0, dim1;
77	StdString domid = domain->getDomainOutputName();
78	StdString appendDomid = (singleDomain) ? "" : "_"+domid ;
79	if (isWrittenDomain(domid)) return ;
80	else setWrittenDomain(domid);
81
82	int nvertex = (domain->nvertex.isEmpty()) ? 0 : domain->nvertex;
83
84
85	StdString dimXid, dimYid ;
86
87	nc_type typePrec ;
88	if (domain->prec.isEmpty()) typePrec = NC_FLOAT ;
89	else if (domain->prec==4) typePrec = NC_FLOAT ;
90	else if (domain->prec==8) typePrec = NC_DOUBLE ;
91
92	bool isRegularDomain = (domain->type == CDomain::type_attr::rectilinear);
93	switch (domain->type)
94	{
95	case CDomain::type_attr::curvilinear :
96	dimXid = StdString("x").append(appendDomid);
97	dimYid = StdString("y").append(appendDomid);
98	break ;
99	case CDomain::type_attr::rectilinear :
100	dimXid = StdString("lon").append(appendDomid);
101	dimYid = StdString("lat").append(appendDomid);
102	break;
103	}
104
105	StdString dimVertId = StdString("nvertex").append(appendDomid);
106
107	string lonid,latid,bounds_lonid,bounds_latid ;
108	string areaId = "area" + appendDomid;
109	/*
110	StdString lonid_loc = (server->intraCommSize > 1)
111	? StdString("lon").append(appendDomid).append("_local")
112	: lonid;
113	StdString latid_loc = (server->intraCommSize > 1)
114	? StdString("lat").append(appendDomid).append("_local")
115	: latid;
116	*/
117
118	CArray<size_t, 1>& indexToWrite = domain->localIndexToWriteOnServer;
119	int nbWritten = indexToWrite.numElements();
120	CArray<double,1> writtenLat, writtenLon;
121	CArray<double,2> writtenBndsLat, writtenBndsLon;
122	CArray<double,1> writtenArea;
123
124	if (domain->hasLonLat)
125	{
126	writtenLat.resize(nbWritten);
127	writtenLon.resize(nbWritten);
128	for (int idx = 0; idx < nbWritten; ++idx)
129	{
130	writtenLat(idx) = domain->latvalue(indexToWrite(idx));
131	writtenLon(idx) = domain->lonvalue(indexToWrite(idx));
132	}
133
134
135	if (domain->hasBounds)
136	{
137	int nvertex = domain->nvertex, idx;
138	writtenBndsLat.resize(nvertex, nbWritten);
139	writtenBndsLon.resize(nvertex, nbWritten);
140	CArray<double,2>& boundslat = domain->bounds_latvalue;
141	CArray<double,2>& boundslon = domain->bounds_lonvalue;
142	for (idx = 0; idx < nbWritten; ++idx)
143	for (int nv = 0; nv < nvertex; ++nv)
144	{
145	writtenBndsLat(nv, idx) = boundslat(nv, int(indexToWrite(idx)));
146	writtenBndsLon(nv, idx) = boundslon(nv, int(indexToWrite(idx)));
147	}
148	}
149	}
150
151	if (domain->hasArea)
152	{
153	writtenArea.resize(nbWritten);
154	for (int idx = 0; idx < nbWritten; ++idx)
155	{
156	writtenArea(idx) = domain->areavalue(indexToWrite(idx));
157	}
158	}
159
160	try
161	{
162	switch (SuperClass::type)
163	{
164	case (MULTI_FILE) :
165	{
166	// if (domain->isEmpty()) return;
167
168	if (server->intraCommSize > 1)
169	{
170	// SuperClassWriter::addDimension(lonid, domain->zoom_ni.getValue());
171	// SuperClassWriter::addDimension(latid, domain->zoom_nj.getValue());
172	}
173
174	switch (domain->type)
175	{
176	case CDomain::type_attr::curvilinear :
177	dim0.push_back(dimYid); dim0.push_back(dimXid);
178	lonid = StdString("nav_lon").append(appendDomid);
179	latid = StdString("nav_lat").append(appendDomid);
180	break ;
181	case CDomain::type_attr::rectilinear :
182	lonid = StdString("lon").append(appendDomid);
183	latid = StdString("lat").append(appendDomid);
184	dim0.push_back(dimYid);
185	dim1.push_back(dimXid);
186	break;
187	}
188
189	bounds_lonid = StdString("bounds_lon").append(appendDomid);
190	bounds_latid = StdString("bounds_lat").append(appendDomid);
191
192	SuperClassWriter::addDimension(dimXid, domain->zoom_ni);
193	SuperClassWriter::addDimension(dimYid, domain->zoom_nj);
194
195	if (domain->hasBounds)
196	SuperClassWriter::addDimension(dimVertId, domain->nvertex);
197
198	if (server->intraCommSize > 1)
199	{
200	this->writeLocalAttributes(domain->zoom_ibegin,
201	domain->zoom_ni,
202	domain->zoom_jbegin,
203	domain->zoom_nj,
204	appendDomid);
205
206	if (singleDomain)
207	this->writeLocalAttributes_IOIPSL(dimXid, dimYid,
208	domain->zoom_ibegin,
209	domain->zoom_ni,
210	domain->zoom_jbegin,
211	domain->zoom_nj,
212	domain->ni_glo,domain->nj_glo,
213	server->intraCommRank,server->intraCommSize);
214	}
215
216	if (domain->hasLonLat)
217	{
218	switch (domain->type)
219	{
220	case CDomain::type_attr::curvilinear :
221	SuperClassWriter::addVariable(latid, typePrec, dim0);
222	SuperClassWriter::addVariable(lonid, typePrec, dim0);
223	break ;
224	case CDomain::type_attr::rectilinear :
225	SuperClassWriter::addVariable(latid, typePrec, dim0);
226	SuperClassWriter::addVariable(lonid, typePrec, dim1);
227	break ;
228	}
229
230	this->writeAxisAttributes(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid);
231	this->writeAxisAttributes(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid);
232
233	if (domain->hasBounds)
234	{
235	SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid);
236	SuperClassWriter::addAttribute("bounds", bounds_latid, &latid);
237
238	dim0.clear();
239	dim0.push_back(dimYid);
240	dim0.push_back(dimXid);
241	dim0.push_back(dimVertId);
242	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0);
243	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0);
244	}
245	}
246
247	dim0.clear();
248	dim0.push_back(dimYid);
249	dim0.push_back(dimXid);
250
251
252	// supress mask if (server->intraCommSize > 1)
253	// supress mask {
254	// supress mask SuperClassWriter::addVariable(maskid, NC_INT, dim0);
255	// supress mask
256	// supress mask this->writeMaskAttributes(maskid,
257	// supress mask domain->data_dim.getValue()/*,
258	// supress mask domain->data_ni.getValue(),
259	// supress mask domain->data_nj.getValue(),
260	// supress mask domain->data_ibegin.getValue(),
261	// supress mask domain->data_jbegin.getValue()*/);
262	// supress mask }
263
264	//SuperClassWriter::setDefaultValue(maskid, &dvm);
265
266	if (domain->hasArea)
267	{
268	SuperClassWriter::addVariable(areaId, typePrec, dim0);
269	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
270	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
271	}
272
273	SuperClassWriter::definition_end();
274
275	if (domain->hasLonLat)
276	{
277	switch (domain->type)
278	{
279	case CDomain::type_attr::curvilinear :
280	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0);
281	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0);
282	break;
283	case CDomain::type_attr::rectilinear :
284	CArray<double,1> lat = writtenLat(Range(fromStart,toEnd,domain->zoom_ni)) ;
285	SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0);
286	CArray<double,1> lon = writtenLon(Range(0,domain->zoom_ni-1)) ;
287	SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0);
288	break;
289	}
290
291	if (domain->hasBounds)
292	{
293	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0);
294	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0);
295	}
296	}
297
298	if (domain->hasArea)
299	{
300	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0);
301	}
302
303	SuperClassWriter::definition_start();
304
305	break;
306	}
307	case (ONE_FILE) :
308	{
309	SuperClassWriter::addDimension(dimXid, domain->global_zoom_ni);
310	SuperClassWriter::addDimension(dimYid, domain->global_zoom_nj);
311
312	if (domain->hasBounds)
313	SuperClassWriter::addDimension(dimVertId, domain->nvertex);
314
315	if (domain->hasLonLat)
316	{
317	switch (domain->type)
318	{
319	case CDomain::type_attr::curvilinear :
320	dim0.push_back(dimYid); dim0.push_back(dimXid);
321	lonid = StdString("nav_lon").append(appendDomid);
322	latid = StdString("nav_lat").append(appendDomid);
323	SuperClassWriter::addVariable(latid, typePrec, dim0);
324	SuperClassWriter::addVariable(lonid, typePrec, dim0);
325	break;
326
327	case CDomain::type_attr::rectilinear :
328	dim0.push_back(dimYid);
329	dim1.push_back(dimXid);
330	lonid = StdString("lon").append(appendDomid);
331	latid = StdString("lat").append(appendDomid);
332	SuperClassWriter::addVariable(latid, typePrec, dim0);
333	SuperClassWriter::addVariable(lonid, typePrec, dim1);
334	break;
335	}
336
337	bounds_lonid = StdString("bounds_lon").append(appendDomid);
338	bounds_latid = StdString("bounds_lat").append(appendDomid);
339
340	this->writeAxisAttributes
341	(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid);
342	this->writeAxisAttributes
343	(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid);
344
345	if (domain->hasBounds)
346	{
347	SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid);
348	SuperClassWriter::addAttribute("bounds", bounds_latid, &latid);
349
350	dim0.clear();
351	dim0.push_back(dimYid);
352	dim0.push_back(dimXid);
353	dim0.push_back(dimVertId);
354	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0);
355	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0);
356	}
357	}
358
359	if (domain->hasArea)
360	{
361	dim0.clear();
362	dim0.push_back(dimYid); dim0.push_back(dimXid);
363	SuperClassWriter::addVariable(areaId, typePrec, dim0);
364	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
365	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
366	dim0.clear();
367	}
368
369	SuperClassWriter::definition_end();
370
371	switch (domain->type)
372	{
373	case CDomain::type_attr::curvilinear :
374	{
375	std::vector<StdSize> start(2) ;
376	std::vector<StdSize> count(2) ;
377	if (domain->isEmpty())
378	{
379	start[0]=0 ; start[1]=0 ;
380	count[0]=0 ; count[1]=0 ;
381	}
382	else
383	{
384	start[1]=domain->zoom_ibegin-domain->global_zoom_ibegin;
385	start[0]=domain->zoom_jbegin-domain->global_zoom_jbegin;
386	count[1]=domain->zoom_ni ; count[0]=domain->zoom_nj ;
387	}
388
389	if (domain->hasLonLat)
390	{
391	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count);
392	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count);
393	}
394	break;
395	}
396	case CDomain::type_attr::rectilinear :
397	{
398	if (domain->hasLonLat)
399	{
400	std::vector<StdSize> start(1) ;
401	std::vector<StdSize> count(1) ;
402	if (domain->isEmpty())
403	{
404	start[0]=0 ;
405	count[0]=0 ;
406	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count);
407	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count);
408	}
409	else
410	{
411	start[0]=domain->zoom_jbegin-domain->global_zoom_jbegin;
412	count[0]=domain->zoom_nj;
413	CArray<double,1> lat = writtenLat(Range(fromStart,toEnd,domain->zoom_ni));
414	SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0,&start,&count);
415
416	start[0]=domain->zoom_ibegin-domain->global_zoom_ibegin;
417	count[0]=domain->zoom_ni;
418	CArray<double,1> lon = writtenLon(Range(0,domain->zoom_ni-1));
419	SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0,&start,&count);
420	}
421	}
422	break;
423	}
424	}
425
426	if (domain->hasBounds)
427	{
428	std::vector<StdSize> start(3);
429	std::vector<StdSize> count(3);
430	if (domain->isEmpty())
431	{
432	start[2] = start[1] = start[0] = 0;
433	count[2] = count[1] = count[0] = 0;
434	}
435	else
436	{
437	start[2] = 0;
438	start[1] = domain->zoom_ibegin - domain->global_zoom_ibegin;
439	start[0] = domain->zoom_jbegin - domain->global_zoom_jbegin;
440	count[2] = domain->nvertex;
441	count[1] = domain->zoom_ni;
442	count[0] = domain->zoom_nj;
443	}
444
445	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0, &start, &count);
446	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0, &start, &count);
447	}
448
449	if (domain->hasArea)
450	{
451	std::vector<StdSize> start(2);
452	std::vector<StdSize> count(2);
453
454	if (domain->isEmpty())
455	{
456	start[0] = 0; start[1] = 0;
457	count[0] = 0; count[1] = 0;
458	}
459	else
460	{
461	start[1] = domain->zoom_ibegin - domain->global_zoom_ibegin;
462	start[0] = domain->zoom_jbegin - domain->global_zoom_jbegin;
463	count[1] = domain->zoom_ni;
464	count[0] = domain->zoom_nj;
465	}
466
467	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0, &start, &count);
468	}
469
470	SuperClassWriter::definition_start();
471	break;
472	}
473	default :
474	ERROR("CNc4DataOutput::writeDomain(domain)",
475	<< "[ type = " << SuperClass::type << "]"
476	<< " not implemented yet !");
477	}
478	}
479	catch (CNetCdfException& e)
480	{
481	StdString msg("On writing the domain : ");
482	msg.append(domid); msg.append("\n");
483	msg.append("In the context : ");
484	msg.append(context->getId()); msg.append("\n");
485	msg.append(e.what());
486	ERROR("CNc4DataOutput::writeDomain_(CDomain* domain)", << msg);
487	}
488
489	domain->addRelFile(this->filename);
490	}
491
492	//--------------------------------------------------------------
493
494	void CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain)
495	{
496	CContext* context = CContext::getCurrent() ;
497	CContextServer* server=context->server ;
498
499	if (domain->IsWritten(this->filename)) return;
500	domain->checkAttributes();
501	if (domain->isEmpty())
502	if (SuperClass::type==MULTI_FILE) return ;
503
504	nc_type typePrec ;
505	if (domain->prec.isEmpty()) typePrec = NC_FLOAT ;
506	else if (domain->prec==4) typePrec = NC_FLOAT ;
507	else if (domain->prec==8) typePrec = NC_DOUBLE ;
508
509	std::vector<StdString> dim0;
510	StdString domid = domain->getDomainOutputName();
511	StdString domainName = domain->name;
512	domain->assignMesh(domainName, domain->nvertex);
513	domain->mesh->createMeshEpsilon(server->intraComm, domain->lonvalue, domain->latvalue, domain->bounds_lonvalue, domain->bounds_latvalue);
514
515	StdString node_x = domainName + "_node_x";
516	StdString node_y = domainName + "_node_y";
517
518	StdString edge_x = domainName + "_edge_x";
519	StdString edge_y = domainName + "_edge_y";
520	StdString edge_nodes = domainName + "_edge_nodes";
521
522	StdString face_x = domainName + "_face_x";
523	StdString face_y = domainName + "_face_y";
524	StdString face_nodes = domainName + "_face_nodes";
525	StdString face_edges = domainName + "_face_edges";
526	StdString edge_faces = domainName + "_edge_face_links";
527	StdString face_faces = domainName + "_face_links";
528
529	StdString dimNode = "n" + domainName + "_node";
530	StdString dimEdge = "n" + domainName + "_edge";
531	StdString dimFace = "n" + domainName + "_face";
532	StdString dimVertex = "n" + domainName + "_vertex";
533	StdString dimTwo = "Two";
534
535	if (!SuperClassWriter::dimExist(dimTwo)) SuperClassWriter::addDimension(dimTwo, 2);
536	if (!isWrittenDomain(domid))
537	{
538	dim0.clear();
539	SuperClassWriter::addVariable(domainName, NC_INT, dim0);
540	SuperClassWriter::addAttribute("cf_role", StdString("mesh_topology"), &domainName);
541	SuperClassWriter::addAttribute("long_name", StdString("Topology data of 2D unstructured mesh"), &domainName);
542	SuperClassWriter::addAttribute("topology_dimension", 2, &domainName);
543	SuperClassWriter::addAttribute("node_coordinates", node_x + " " + node_y, &domainName);
544	}
545
546	try
547	{
548	switch (SuperClass::type)
549	{
550	case (ONE_FILE) :
551	{
552	// Adding nodes
553	if (domain->nvertex == 1)
554	{
555	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
556	{
557	SuperClassWriter::addDimension(dimNode, domain->ni_glo);
558	dim0.clear();
559	dim0.push_back(dimNode);
560	SuperClassWriter::addVariable(node_x, typePrec, dim0);
561	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
562	SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x);
563	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
564	SuperClassWriter::addVariable(node_y, typePrec, dim0);
565	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
566	SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y);
567	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
568	}
569	} // domain->nvertex == 1
570
571	// Adding edges and nodes, if nodes have not been defined previously
572	if (domain->nvertex == 2)
573	{
574	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
575	{
576	SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo);
577	dim0.clear();
578	dim0.push_back(dimNode);
579	SuperClassWriter::addVariable(node_x, typePrec, dim0);
580	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
581	SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x);
582	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
583	SuperClassWriter::addVariable(node_y, typePrec, dim0);
584	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
585	SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y);
586	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
587	}
588	SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName);
589	SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName);
590	SuperClassWriter::addDimension(dimEdge, domain->ni_glo);
591	dim0.clear();
592	dim0.push_back(dimEdge);
593	SuperClassWriter::addVariable(edge_x, typePrec, dim0);
594	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x);
595	SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x);
596	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x);
597	SuperClassWriter::addVariable(edge_y, typePrec, dim0);
598	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y);
599	SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y);
600	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y);
601	dim0.clear();
602	dim0.push_back(dimEdge);
603	dim0.push_back(dimTwo);
604	SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0);
605	SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes);
606	SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes);
607	SuperClassWriter::addAttribute("start_index", 0, &edge_nodes);
608	} // domain->nvertex == 2
609
610	// Adding faces, edges, and nodes, if edges and nodes have not been defined previously
611	if (domain->nvertex > 2)
612	{
613	// Nodes
614	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
615	{
616	SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo);
617	dim0.clear();
618	dim0.push_back(dimNode);
619	SuperClassWriter::addVariable(node_x, typePrec, dim0);
620	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
621	SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x);
622	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
623	SuperClassWriter::addVariable(node_y, typePrec, dim0);
624	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
625	SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y);
626	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
627	}
628	if (!SuperClassWriter::varExist(edge_x) \|\| !SuperClassWriter::varExist(edge_y))
629	{
630	SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName);
631	SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName);
632	SuperClassWriter::addDimension(dimEdge, domain->mesh->nbEdgesGlo);
633	dim0.clear();
634	dim0.push_back(dimEdge);
635	SuperClassWriter::addVariable(edge_x, typePrec, dim0);
636	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x);
637	SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x);
638	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x);
639	SuperClassWriter::addVariable(edge_y, typePrec, dim0);
640	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y);
641	SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y);
642	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y);
643	dim0.clear();
644	dim0.push_back(dimEdge);
645	dim0.push_back(dimTwo);
646	SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0);
647	SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes);
648	SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes);
649	SuperClassWriter::addAttribute("start_index", 0, &edge_nodes);
650	}
651	SuperClassWriter::addAttribute("face_coordinates", face_x + " " + face_y, &domainName);
652	SuperClassWriter::addAttribute("face_node_connectivity", face_nodes, &domainName);
653	SuperClassWriter::addDimension(dimFace, domain->ni_glo);
654	SuperClassWriter::addDimension(dimVertex, domain->nvertex);
655	dim0.clear();
656	dim0.push_back(dimFace);
657	SuperClassWriter::addVariable(face_x, typePrec, dim0);
658	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &face_x);
659	SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh faces."), &face_x);
660	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &face_x);
661	SuperClassWriter::addVariable(face_y, typePrec, dim0);
662	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &face_y);
663	SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh faces."), &face_y);
664	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &face_y);
665	dim0.clear();
666	dim0.push_back(dimFace);
667	dim0.push_back(dimVertex);
668	SuperClassWriter::addVariable(face_nodes, NC_INT, dim0);
669	SuperClassWriter::addAttribute("cf_role", StdString("face_node_connectivity"), &face_nodes);
670	SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its corner nodes."), &face_nodes);
671	SuperClassWriter::addAttribute("start_index", 0, &face_nodes);
672	dim0.clear();
673	dim0.push_back(dimFace);
674	dim0.push_back(dimVertex);
675	SuperClassWriter::addVariable(face_edges, NC_INT, dim0);
676	SuperClassWriter::addAttribute("cf_role", StdString("face_edge_connectivity"), &face_edges);
677	SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its edges."), &face_edges);
678	SuperClassWriter::addAttribute("start_index", 0, &face_edges);
679	SuperClassWriter::addAttribute("_FillValue", 999999, &face_edges);
680	dim0.clear();
681	dim0.push_back(dimEdge);
682	dim0.push_back(dimTwo);
683	SuperClassWriter::addVariable(edge_faces, NC_INT, dim0);
684	SuperClassWriter::addAttribute("cf_role", StdString("edge_face connectivity"), &edge_faces);
685	SuperClassWriter::addAttribute("long_name", StdString("neighbor faces for edges"), &edge_faces);
686	SuperClassWriter::addAttribute("start_index", 0, &edge_faces);
687	SuperClassWriter::addAttribute("_FillValue", -999, &edge_faces);
688	SuperClassWriter::addAttribute("comment", StdString("missing neighbor faces are indicated using _FillValue"), &edge_faces);
689	dim0.clear();
690	dim0.push_back(dimFace);
691	dim0.push_back(dimVertex);
692	SuperClassWriter::addVariable(face_faces, NC_INT, dim0);
693	SuperClassWriter::addAttribute("cf_role", StdString("face_face connectivity"), &face_faces);
694	SuperClassWriter::addAttribute("long_name", StdString("Indicates which other faces neighbor each face"), &face_faces);
695	SuperClassWriter::addAttribute("start_index", 0, &face_faces);
696	SuperClassWriter::addAttribute("_FillValue", 999999, &face_faces);
697	SuperClassWriter::addAttribute("flag_values", -1, &face_faces);
698	SuperClassWriter::addAttribute("flag_meanings", StdString("out_of_mesh"), &face_faces);
699	} // domain->nvertex > 2
700
701	SuperClassWriter::definition_end();
702
703	std::vector<StdSize> startEdges(1) ;
704	std::vector<StdSize> countEdges(1) ;
705	std::vector<StdSize> startNodes(1) ;
706	std::vector<StdSize> countNodes(1) ;
707	std::vector<StdSize> startFaces(1) ;
708	std::vector<StdSize> countFaces(1) ;
709	std::vector<StdSize> startEdgeNodes(2) ;
710	std::vector<StdSize> countEdgeNodes(2) ;
711	std::vector<StdSize> startEdgeFaces(2) ;
712	std::vector<StdSize> countEdgeFaces(2) ;
713	std::vector<StdSize> startFaceConctv(2) ;
714	std::vector<StdSize> countFaceConctv(2) ;
715
716	if (!isWrittenDomain(domid))
717	{
718	if (domain->nvertex == 1)
719	{
720	if (domain->isEmpty())
721	{
722	startNodes[0]=0 ;
723	countNodes[0]=0 ;
724	}
725	else
726	{
727	startNodes[0] = domain->zoom_ibegin-domain->global_zoom_ibegin;
728	countNodes[0] = domain->zoom_ni ;
729	}
730
731	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes);
732	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes);
733	}
734	else if (domain->nvertex == 2)
735	{
736	if (domain->isEmpty())
737	{
738	startEdges[0]=0 ;
739	countEdges[0]=0 ;
740	startNodes[0]=0 ;
741	countNodes[0]=0 ;
742	startEdgeNodes[0]=0;
743	startEdgeNodes[1]=0;
744	countEdgeNodes[0]=0;
745	countEdgeNodes[1]=0;
746
747	}
748	else
749	{
750	startEdges[0] = domain->zoom_ibegin-domain->global_zoom_ibegin;
751	countEdges[0] = domain->zoom_ni;
752	startNodes[0] = domain->mesh->node_start;
753	countNodes[0] = domain->mesh->node_count;
754	startEdgeNodes[0] = domain->zoom_ibegin-domain->global_zoom_ibegin;
755	startEdgeNodes[1] = 0;
756	countEdgeNodes[0] = domain->zoom_ni;
757	countEdgeNodes[1] = 2;
758	}
759	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes);
760	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes);
761	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
762	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
763	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
764	}
765	else
766	{
767	if (domain->isEmpty())
768	{
769	startFaces[0] = 0 ;
770	countFaces[0] = 0 ;
771	startNodes[0] = 0;
772	countNodes[0] = 0;
773	startEdges[0] = 0;
774	countEdges[0] = 0;
775	startEdgeFaces[0] = 0;
776	startEdgeFaces[1] = 0;
777	countEdgeFaces[0] = 0;
778	countEdgeFaces[1] = 0;
779	startFaceConctv[0] = 0;
780	startFaceConctv[1] = 0;
781	countFaceConctv[0] = 0;
782	countFaceConctv[1] = 0;
783	}
784	else
785	{
786	startFaces[0] = domain->zoom_ibegin-domain->global_zoom_ibegin;
787	countFaces[0] = domain->zoom_ni ;
788	startNodes[0] = domain->mesh->node_start;
789	countNodes[0] = domain->mesh->node_count;
790	startEdges[0] = domain->mesh->edge_start;
791	countEdges[0] = domain->mesh->edge_count;
792	startEdgeNodes[0] = domain->mesh->edge_start;
793	startEdgeNodes[1] = 0;
794	countEdgeNodes[0] = domain->mesh->edge_count;
795	countEdgeNodes[1]= 2;
796	startEdgeFaces[0] = domain->mesh->edge_start;
797	startEdgeFaces[1]= 0;
798	countEdgeFaces[0] = domain->mesh->edge_count;
799	countEdgeFaces[1]= 2;
800	startFaceConctv[0] = domain->zoom_ibegin-domain->global_zoom_ibegin;
801	startFaceConctv[1] = 0;
802	countFaceConctv[0] = domain->zoom_ni;
803	countFaceConctv[1] = domain->nvertex;
804	}
805	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes);
806	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes);
807	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
808	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
809	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
810	SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0, &startFaces, &countFaces);
811	SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0, &startFaces, &countFaces);
812	SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes, isCollective, 0, &startFaceConctv, &countFaceConctv);
813	SuperClassWriter::writeData(domain->mesh->face_edges, face_edges, isCollective, 0, &startFaceConctv, &countFaceConctv);
814	SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces, isCollective, 0, &startEdgeFaces, &countEdgeFaces);
815	SuperClassWriter::writeData(domain->mesh->face_faces, face_faces, isCollective, 0, &startFaceConctv, &countFaceConctv);
816	}
817	setWrittenDomain(domid);
818	} // !isWrittenDomain
819	else
820	{
821	if (domain->nvertex == 2)
822	{
823	startEdges[0] = domain->zoom_ibegin-domain->global_zoom_ibegin;
824	countEdges[0] = domain->zoom_ni;
825	startEdgeNodes[0] = domain->zoom_ibegin-domain->global_zoom_ibegin;
826	startEdgeNodes[1] = 0;
827	countEdgeNodes[0] = domain->zoom_ni;
828	countEdgeNodes[1]= 2;
829	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
830	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
831	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
832	}
833	if (domain->nvertex > 2)
834	{
835
836	if (!domain->mesh->edgesAreWritten)
837	{
838	startEdges[0] = domain->mesh->edge_start;
839	countEdges[0] = domain->mesh->edge_count;
840	startEdgeNodes[0] = domain->mesh->edge_start;
841	startEdgeNodes[1] = 0;
842	countEdgeNodes[0] = domain->mesh->edge_count;
843	countEdgeNodes[1]= 2;
844	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
845	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
846	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
847	}
848	startFaces[0] = domain->zoom_ibegin-domain->global_zoom_ibegin;
849	countFaces[0] = domain->zoom_ni;
850	startEdgeFaces[0] = domain->mesh->edge_start;
851	startEdgeFaces[1]= 0;
852	countEdgeFaces[0] = domain->mesh->edge_count;
853	countEdgeFaces[1]= 2;
854	startFaceConctv[0] = domain->zoom_ibegin-domain->global_zoom_ibegin;
855	startFaceConctv[1] = 0;
856	countFaceConctv[0] = domain->zoom_ni;
857	countFaceConctv[1] = domain->nvertex;
858	SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0, &startFaces, &countFaces);
859	SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0, &startFaces, &countFaces);
860	SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes, isCollective, 0, &startFaceConctv, &countFaceConctv);
861	SuperClassWriter::writeData(domain->mesh->face_edges, face_edges, isCollective, 0, &startFaceConctv, &countFaceConctv);
862	SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces, isCollective, 0, &startEdgeFaces, &countEdgeFaces);
863	SuperClassWriter::writeData(domain->mesh->face_faces, face_faces, isCollective, 0, &startFaceConctv, &countFaceConctv);
864	}
865	}// isWrittenDomain
866
867	SuperClassWriter::definition_start();
868
869	break;
870	} // ONE_FILE
871
872	case (MULTI_FILE) :
873	{
874	break;
875	}
876
877	default :
878	ERROR("CNc4DataOutput::writeDomain(domain)",
879	<< "[ type = " << SuperClass::type << "]"
880	<< " not implemented yet !");
881	} // switch
882	} // try
883
884	catch (CNetCdfException& e)
885	{
886	StdString msg("On writing the domain : ");
887	msg.append(domid); msg.append("\n");
888	msg.append("In the context : ");
889	msg.append(context->getId()); msg.append("\n");
890	msg.append(e.what());
891	ERROR("CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain)", << msg);
892	}
893
894	domain->addRelFile(this->filename);
895	}
896
897	//--------------------------------------------------------------
898
899	void CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)
900	{
901	CContext* context = CContext::getCurrent() ;
902	CContextServer* server=context->server ;
903
904	if (domain->IsWritten(this->filename)) return;
905	domain->checkAttributes();
906
907	if (domain->isEmpty())
908	if (SuperClass::type==MULTI_FILE) return ;
909
910	std::vector<StdString> dim0, dim1;
911	StdString domid = domain->getDomainOutputName();
912	if (isWrittenDomain(domid)) return ;
913	else setWrittenDomain(domid);
914
915	StdString appendDomid = (singleDomain) ? "" : "_"+domid ;
916
917	StdString dimXid = StdString("cell").append(appendDomid);
918	StdString dimVertId = StdString("nvertex").append(appendDomid);
919
920	string lonid,latid,bounds_lonid,bounds_latid ;
921	string areaId = "area" + appendDomid;
922
923	nc_type typePrec ;
924	if (domain->prec.isEmpty()) typePrec = NC_FLOAT ;
925	else if (domain->prec==4) typePrec = NC_FLOAT ;
926	else if (domain->prec==8) typePrec = NC_DOUBLE ;
927
928	int nvertex = (domain->nvertex.isEmpty()) ? 0 : domain->nvertex;
929
930	CArray<size_t, 1>& indexToWrite = domain->localIndexToWriteOnServer;
931	int nbWritten = indexToWrite.numElements();
932	CArray<double,1> writtenLat, writtenLon;
933	CArray<double,2> writtenBndsLat, writtenBndsLon;
934	CArray<double,1> writtenArea;
935
936	if (domain->hasLonLat)
937	{
938	writtenLat.resize(nbWritten);
939	writtenLon.resize(nbWritten);
940	for (int idx = 0; idx < nbWritten; ++idx)
941	{
942	writtenLat(idx) = domain->latvalue(indexToWrite(idx));
943	writtenLon(idx) = domain->lonvalue(indexToWrite(idx));
944	}
945
946
947	if (domain->hasBounds)
948	{
949	int nvertex = domain->nvertex, idx;
950	writtenBndsLat.resize(nvertex, nbWritten);
951	writtenBndsLon.resize(nvertex, nbWritten);
952	CArray<double,2>& boundslat = domain->bounds_latvalue;
953	CArray<double,2>& boundslon = domain->bounds_lonvalue;
954	for (idx = 0; idx < nbWritten; ++idx)
955	for (int nv = 0; nv < nvertex; ++nv)
956	{
957	writtenBndsLat(nv, idx) = boundslat(nv, int(indexToWrite(idx)));
958	writtenBndsLon(nv, idx) = boundslon(nv, int(indexToWrite(idx)));
959	}
960	}
961	}
962
963	if (domain->hasArea)
964	{
965	writtenArea.resize(nbWritten);
966	for (int idx = 0; idx < nbWritten; ++idx)
967	{
968	writtenArea(idx) = domain->areavalue(indexToWrite(idx));
969	}
970	}
971
972	try
973	{
974	switch (SuperClass::type)
975	{
976	case (MULTI_FILE) :
977	{
978	dim0.push_back(dimXid);
979	SuperClassWriter::addDimension(dimXid, domain->zoom_ni);
980
981	lonid = StdString("lon").append(appendDomid);
982	latid = StdString("lat").append(appendDomid);
983	bounds_lonid = StdString("bounds_lon").append(appendDomid);
984	bounds_latid = StdString("bounds_lat").append(appendDomid);
985	if (domain->hasLonLat)
986	{
987	SuperClassWriter::addVariable(latid, typePrec, dim0);
988	SuperClassWriter::addVariable(lonid, typePrec, dim0);
989	this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid);
990	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid);
991	this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid);
992	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid);
993	if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex);
994	}
995	dim0.clear();
996	if (domain->hasBounds)
997	{
998	dim0.push_back(dimXid);
999	dim0.push_back(dimVertId);
1000	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0);
1001	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0);
1002	}
1003
1004	dim0.clear();
1005	dim0.push_back(dimXid);
1006	if (domain->hasArea)
1007	{
1008	SuperClassWriter::addVariable(areaId, typePrec, dim0);
1009	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
1010	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
1011	}
1012
1013	SuperClassWriter::definition_end();
1014
1015	if (domain->hasLonLat)
1016	{
1017	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0);
1018	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0);
1019	if (domain->hasBounds)
1020	{
1021	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0);
1022	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0);
1023	}
1024	}
1025
1026	if (domain->hasArea)
1027	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0);
1028
1029	SuperClassWriter::definition_start();
1030	break ;
1031	}
1032
1033	case (ONE_FILE) :
1034	{
1035	lonid = StdString("lon").append(appendDomid);
1036	latid = StdString("lat").append(appendDomid);
1037	bounds_lonid = StdString("bounds_lon").append(appendDomid);
1038	bounds_latid = StdString("bounds_lat").append(appendDomid);
1039	dim0.push_back(dimXid);
1040	SuperClassWriter::addDimension(dimXid, domain->ni_glo);
1041	if (domain->hasLonLat)
1042	{
1043	SuperClassWriter::addVariable(latid, typePrec, dim0);
1044	SuperClassWriter::addVariable(lonid, typePrec, dim0);
1045
1046	this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid);
1047	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid);
1048	this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid);
1049	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid);
1050	if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, nvertex);
1051	}
1052	dim0.clear();
1053
1054	if (domain->hasBounds)
1055	{
1056	dim0.push_back(dimXid);
1057	dim0.push_back(dimVertId);
1058	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0);
1059	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0);
1060	}
1061
1062	if (domain->hasArea)
1063	{
1064	dim0.clear();
1065	dim0.push_back(dimXid);
1066	SuperClassWriter::addVariable(areaId, typePrec, dim0);
1067	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
1068	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
1069	}
1070
1071	SuperClassWriter::definition_end();
1072
1073	std::vector<StdSize> start(1), startBounds(2) ;
1074	std::vector<StdSize> count(1), countBounds(2) ;
1075	if (domain->isEmpty())
1076	{
1077	start[0]=0 ;
1078	count[0]=0 ;
1079	startBounds[1]=0 ;
1080	countBounds[1]=nvertex ;
1081	startBounds[0]=0 ;
1082	countBounds[0]=0 ;
1083	}
1084	else
1085	{
1086	start[0]=domain->zoom_ibegin - domain->global_zoom_ibegin;
1087	count[0]=domain->zoom_ni;
1088	startBounds[0]=domain->zoom_ibegin-domain->global_zoom_ibegin;
1089	startBounds[1]=0 ;
1090	countBounds[0]=domain->zoom_ni;
1091	countBounds[1]=nvertex ;
1092	}
1093
1094	if (domain->hasLonLat)
1095	{
1096	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count);
1097	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count);
1098	if (domain->hasBounds)
1099	{
1100	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0,&startBounds,&countBounds);
1101	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0,&startBounds,&countBounds);
1102	}
1103	}
1104
1105	if (domain->hasArea)
1106	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0, &start, &count);
1107
1108	SuperClassWriter::definition_start();
1109
1110	break;
1111	}
1112	default :
1113	ERROR("CNc4DataOutput::writeDomain(domain)",
1114	<< "[ type = " << SuperClass::type << "]"
1115	<< " not implemented yet !");
1116	}
1117	}
1118	catch (CNetCdfException& e)
1119	{
1120	StdString msg("On writing the domain : ");
1121	msg.append(domid); msg.append("\n");
1122	msg.append("In the context : ");
1123	msg.append(context->getId()); msg.append("\n");
1124	msg.append(e.what());
1125	ERROR("CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)", << msg);
1126	}
1127	domain->addRelFile(this->filename);
1128	}
1129	//--------------------------------------------------------------
1130
1131	void CNc4DataOutput::writeAxis_(CAxis* axis)
1132	{
1133	if (axis->IsWritten(this->filename)) return;
1134	axis->checkAttributes();
1135
1136	axis->computeWrittenIndex();
1137	axis->computeWrittenCompressedIndex(comm_file);
1138
1139	int zoom_size = (MULTI_FILE == SuperClass::type) ? axis->zoom_n
1140	: axis->global_zoom_n;
1141
1142	int zoom_count = axis->zoom_n;
1143	int zoom_begin = axis->zoom_begin;
1144	// int zoom_begin = (MULTI_FILE == SuperClass::type) ? axis->global_zoom_begin
1145	// : axis->zoom_begin;
1146
1147	if ((0 == axis->zoom_n) && (MULTI_FILE == SuperClass::type)) return;
1148
1149	std::vector<StdString> dims;
1150	StdString axisid = axis->getAxisOutputName();
1151	if (isWrittenAxis(axisid)) return ;
1152	else setWrittenAxis(axisid);
1153
1154	nc_type typePrec ;
1155	if (axis->prec.isEmpty()) typePrec = NC_FLOAT ;
1156	else if (axis->prec==4) typePrec = NC_FLOAT ;
1157	else if (axis->prec==8) typePrec = NC_DOUBLE ;
1158
1159	if (!axis->label.isEmpty()) typePrec = NC_CHAR ;
1160	string strId="str_len" ;
1161	try
1162	{
1163	SuperClassWriter::addDimension(axisid, zoom_size);
1164	if (!axis->label.isEmpty()) SuperClassWriter::addDimension(strId, stringArrayLen);
1165	if (axis->hasValue)
1166	{
1167	dims.push_back(axisid);
1168	if (!axis->label.isEmpty()) dims.push_back(strId);
1169	SuperClassWriter::addVariable(axisid, typePrec, dims);
1170
1171	if (!axis->name.isEmpty())
1172	SuperClassWriter::addAttribute("name", axis->name.getValue(), &axisid);
1173
1174	if (!axis->standard_name.isEmpty())
1175	SuperClassWriter::addAttribute("standard_name", axis->standard_name.getValue(), &axisid);
1176
1177	if (!axis->long_name.isEmpty())
1178	SuperClassWriter::addAttribute("long_name", axis->long_name.getValue(), &axisid);
1179
1180	if (!axis->unit.isEmpty())
1181	SuperClassWriter::addAttribute("units", axis->unit.getValue(), &axisid);
1182
1183	if (!axis->positive.isEmpty())
1184	{
1185	SuperClassWriter::addAttribute("axis", string("Z"), &axisid);
1186	SuperClassWriter::addAttribute("positive",
1187	(axis->positive == CAxis::positive_attr::up) ? string("up") : string("down"),
1188	&axisid);
1189	}
1190
1191	if (!axis->formula.isEmpty())
1192	SuperClassWriter::addAttribute("formula", axis->formula.getValue(), &axisid);
1193
1194	if (!axis->formula_term.isEmpty())
1195	SuperClassWriter::addAttribute("formula_term", axis->formula_term.getValue(), &axisid);
1196
1197	StdString axisBoundsId = axisid + "_bounds";
1198	if (!axis->bounds.isEmpty() && axis->label.isEmpty())
1199	{
1200	dims.push_back("axis_nbounds");
1201	SuperClassWriter::addVariable(axisBoundsId, typePrec, dims);
1202	SuperClassWriter::addAttribute("bounds", axisBoundsId, &axisid);
1203
1204	if (!axis->standard_name.isEmpty())
1205	SuperClassWriter::addAttribute("standard_name", axis->standard_name.getValue(), &axisBoundsId);
1206
1207	if (!axis->unit.isEmpty())
1208	SuperClassWriter::addAttribute("units", axis->unit.getValue(), &axisBoundsId);
1209
1210	if (!axis->formula_bounds.isEmpty())
1211	SuperClassWriter::addAttribute("formula", axis->formula_bounds.getValue(), &axisBoundsId);
1212
1213	if (!axis->formula_term_bounds.isEmpty())
1214	SuperClassWriter::addAttribute("formula_term", axis->formula_term_bounds.getValue(), &axisBoundsId);
1215	}
1216
1217
1218	SuperClassWriter::definition_end();
1219
1220	CArray<size_t, 1>& indexToWrite = axis->localIndexToWriteOnServer;
1221	int nbWritten = indexToWrite.numElements();
1222	CArray<double,1> axis_value(indexToWrite.numElements());
1223	for (int i = 0; i < nbWritten; i++) axis_value(i) = axis->value(indexToWrite(i));
1224	CArray<double,2> axis_bounds;
1225	CArray<string,1> axis_label;
1226	if (!axis->label.isEmpty())
1227	{
1228	axis_label.resize(indexToWrite.numElements());
1229	for (int i = 0; i < nbWritten; i++) axis_label(i) = axis->label(indexToWrite(i));
1230	}
1231
1232	switch (SuperClass::type)
1233	{
1234	case MULTI_FILE:
1235	{
1236	if (axis->label.isEmpty())
1237	SuperClassWriter::writeData(axis_value, axisid, isCollective, 0);
1238
1239	if (!axis->bounds.isEmpty() && axis->label.isEmpty())
1240	{
1241	axis_bounds.resize(2, indexToWrite.numElements());
1242	for (int i = 0; i < nbWritten; ++i)
1243	{
1244	axis_bounds(0, i) = axis->bounds(0, int(indexToWrite(i)));
1245	axis_bounds(1, i) = axis->bounds(1, int(indexToWrite(i)));
1246	}
1247
1248	SuperClassWriter::writeData(axis_bounds, axisBoundsId, isCollective, 0);
1249	}
1250
1251	// Need to check after
1252	if (!axis->label.isEmpty())
1253	SuperClassWriter::writeData(axis_label, axisid, isCollective, 0);
1254
1255	SuperClassWriter::definition_start();
1256	break;
1257	}
1258	case ONE_FILE:
1259	{
1260	std::vector<StdSize> start(1), startBounds(2) ;
1261	std::vector<StdSize> count(1), countBounds(2) ;
1262	start[0] = startBounds[0] = zoom_begin - axis->global_zoom_begin;
1263	count[0] = countBounds[0] = zoom_count; // zoom_size
1264	startBounds[1] = 0;
1265	countBounds[1] = 2;
1266
1267	if (axis->label.isEmpty())
1268	SuperClassWriter::writeData(axis_value, axisid, isCollective, 0, &start, &count);
1269
1270	if (!axis->bounds.isEmpty() && axis->label.isEmpty())
1271	{
1272	axis_bounds.resize(2, indexToWrite.numElements());
1273	for (int i = 0; i < nbWritten; ++i)
1274	{
1275	axis_bounds(0, i) = axis->bounds(0, int(indexToWrite(i)));
1276	axis_bounds(1, i) = axis->bounds(1, int(indexToWrite(i)));
1277	}
1278	SuperClassWriter::writeData(axis_bounds, axisBoundsId, isCollective, 0, &startBounds, &countBounds);
1279	}
1280
1281	// Need to check after
1282	if (!axis->label.isEmpty())
1283	{
1284	std::vector<StdSize> startLabel(2), countLabel(2);
1285	startLabel[0] = start[0]; startLabel[1] = 0;
1286	countLabel[0] = count[0]; countLabel[1] = stringArrayLen;
1287	SuperClassWriter::writeData(axis_label, axisid, isCollective, 0, &startLabel, &countLabel);
1288	}
1289
1290	SuperClassWriter::definition_start();
1291
1292	break;
1293	}
1294	default :
1295	ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)",
1296	<< "[ type = " << SuperClass::type << "]"
1297	<< " not implemented yet !");
1298	}
1299	}
1300	}
1301	catch (CNetCdfException& e)
1302	{
1303	StdString msg("On writing the axis : ");
1304	msg.append(axisid); msg.append("\n");
1305	msg.append("In the context : ");
1306	CContext* context = CContext::getCurrent() ;
1307	msg.append(context->getId()); msg.append("\n");
1308	msg.append(e.what());
1309	ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)", << msg);
1310	}
1311	axis->addRelFile(this->filename);
1312	}
1313
1314	void CNc4DataOutput::writeScalar_(CScalar* scalar)
1315	{
1316	if (scalar->IsWritten(this->filename)) return;
1317	scalar->checkAttributes();
1318	int scalarSize = 1;
1319
1320	StdString scalaId = scalar->getScalarOutputName();
1321	if (isWrittenAxis(scalaId)) return ;
1322	else setWrittenAxis(scalaId);
1323
1324	nc_type typePrec ;
1325	if (scalar->prec.isEmpty()) typePrec = NC_FLOAT ;
1326	else if (scalar->prec==4) typePrec = NC_FLOAT ;
1327	else if (scalar->prec==8) typePrec = NC_DOUBLE ;
1328
1329
1330	try
1331	{
1332	if (!scalar->value.isEmpty())
1333	{
1334	// dims.push_back(scalaId);
1335	std::vector<StdString> dims;
1336	SuperClassWriter::addVariable(scalaId, typePrec, dims);
1337
1338	if (!scalar->name.isEmpty())
1339	SuperClassWriter::addAttribute("name", scalar->name.getValue(), &scalaId);
1340
1341	if (!scalar->standard_name.isEmpty())
1342	SuperClassWriter::addAttribute("standard_name", scalar->standard_name.getValue(), &scalaId);
1343
1344	if (!scalar->long_name.isEmpty())
1345	SuperClassWriter::addAttribute("long_name", scalar->long_name.getValue(), &scalaId);
1346
1347	if (!scalar->unit.isEmpty())
1348	SuperClassWriter::addAttribute("units", scalar->unit.getValue(), &scalaId);
1349
1350	SuperClassWriter::definition_end();
1351
1352	switch (SuperClass::type)
1353	{
1354	case MULTI_FILE:
1355	{
1356	CArray<double,1> scalarValue(scalarSize);
1357	scalarValue(0) = scalar->value;
1358	SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0);
1359	SuperClassWriter::definition_start();
1360
1361	break;
1362	}
1363	case ONE_FILE:
1364	{
1365	CArray<double,1> scalarValue(scalarSize);
1366	scalarValue(0) = scalar->value;
1367
1368	std::vector<StdSize> start(1);
1369	std::vector<StdSize> count(1);
1370	start[0] = 0;
1371	count[0] = 1;
1372	SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0, &start, &count);
1373	SuperClassWriter::definition_start();
1374
1375	break;
1376	}
1377	default :
1378	ERROR("CNc4DataOutput::writeAxis_(CAxis* scalar)",
1379	<< "[ type = " << SuperClass::type << "]"
1380	<< " not implemented yet !");
1381	}
1382	}
1383	}
1384	catch (CNetCdfException& e)
1385	{
1386	StdString msg("On writing the scalar : ");
1387	msg.append(scalaId); msg.append("\n");
1388	msg.append("In the context : ");
1389	CContext* context = CContext::getCurrent() ;
1390	msg.append(context->getId()); msg.append("\n");
1391	msg.append(e.what());
1392	ERROR("CNc4DataOutput::writeScalar_(CScalar* scalar)", << msg);
1393	}
1394	scalar->addRelFile(this->filename);
1395	}
1396
1397	//--------------------------------------------------------------
1398
1399	void CNc4DataOutput::writeGridCompressed_(CGrid* grid)
1400	{
1401	if (grid->isScalarGrid() \|\| grid->isWrittenCompressed(this->filename)) return;
1402
1403	try
1404	{
1405	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
1406	std::vector<StdString> domainList = grid->getDomainList();
1407	std::vector<StdString> axisList = grid->getAxisList();
1408	std::vector<StdString> scalarList = grid->getScalarList();
1409	int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0;
1410
1411	std::vector<StdString> dims;
1412
1413	if (grid->isCompressible())
1414	{
1415	StdString varId = grid->getId() + "_points";
1416
1417	int nbIndexes = (SuperClass::type == MULTI_FILE) ? grid->getNumberWrittenIndexes() : grid->getTotalNumberWrittenIndexes();
1418	SuperClassWriter::addDimension(varId, nbIndexes);
1419
1420	dims.push_back(varId);
1421	SuperClassWriter::addVariable(varId, NC_INT, dims);
1422
1423	StdOStringStream compress;
1424	for (int i = numElement - 1; i >= 0; --i)
1425	{
1426	if (2 == axisDomainOrder(i))
1427	{
1428	CDomain* domain = CDomain::get(domainList[domainList.size() - idxDomain - 1]);
1429	StdString domId = domain->getDomainOutputName();
1430	StdString appendDomId = singleDomain ? "" : "_" + domId;
1431
1432	switch (domain->type)
1433	{
1434	case CDomain::type_attr::curvilinear:
1435	compress << "y" << appendDomId << " x" << appendDomId;
1436	break;
1437	case CDomain::type_attr::rectilinear:
1438	compress << "lat" << appendDomId << " lon" << appendDomId;
1439	break;
1440	case CDomain::type_attr::unstructured:
1441	compress << "cell" << appendDomId;
1442	break;
1443	}
1444	++idxDomain;
1445	}
1446	else if (1 == axisDomainOrder(i))
1447	{
1448	CAxis* axis = CAxis::get(axisList[axisList.size() - idxAxis - 1]);
1449	compress << axis->getAxisOutputName();
1450	++idxAxis;
1451	}
1452	else
1453	{
1454	CScalar* scalar = CScalar::get(scalarList[scalarList.size() - idxScalar - 1]);
1455	compress << scalar->getScalarOutputName();
1456	++idxScalar;
1457	}
1458
1459	if (i != 0) compress << ' ';
1460	}
1461	SuperClassWriter::addAttribute("compress", compress.str(), &varId);
1462
1463	CArray<int, 1> indexes(grid->getNumberWrittenIndexes());
1464	indexes = grid->localIndexToWriteOnServer;
1465
1466	switch (SuperClass::type)
1467	{
1468	case (MULTI_FILE):
1469	{
1470	SuperClassWriter::writeData(indexes, varId, isCollective, 0);
1471	break;
1472	}
1473	case (ONE_FILE):
1474	{
1475	if (grid->doGridHaveDataDistributed())
1476	grid->getDistributionServer()->computeGlobalIndex(indexes);
1477
1478	std::vector<StdSize> start, count;
1479	start.push_back(grid->getOffsetWrittenIndexes());
1480	count.push_back(grid->getNumberWrittenIndexes());
1481
1482	SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count);
1483	break;
1484	}
1485	}
1486	}
1487	else
1488	{
1489	for (int i = 0; i < numElement; ++i)
1490	{
1491	StdString varId, compress;
1492	CArray<int, 1> indexes;
1493	bool isDistributed;
1494	StdSize nbIndexes, totalNbIndexes, offset;
1495	int firstGlobalIndex;
1496
1497	if (2 == axisDomainOrder(i))
1498	{
1499	CDomain* domain = CDomain::get(domainList[idxDomain]);
1500	StdString domId = domain->getDomainOutputName();
1501
1502	if (!domain->isCompressible()
1503	\|\| domain->type == CDomain::type_attr::unstructured
1504	\|\| domain->isWrittenCompressed(this->filename)
1505	\|\| isWrittenCompressedDomain(domId))
1506	continue;
1507
1508	StdString appendDomId = singleDomain ? "" : "_" + domId;
1509
1510	varId = domId + "_points";
1511	switch (domain->type)
1512	{
1513	case CDomain::type_attr::curvilinear:
1514	compress = "y" + appendDomId + " x" + appendDomId;
1515	break;
1516	case CDomain::type_attr::rectilinear:
1517	compress = "lat" + appendDomId + " lon" + appendDomId;
1518	break;
1519	}
1520
1521	// indexes.resize(domain->compressedIndexToWriteOnServer[comm_file].numElements());
1522	// indexes = domain->compressedIndexToWriteOnServer[com_file];
1523	indexes.resize(domain->getCompressedIndexToWriteOnServer(comm_file).numElements());
1524	indexes = domain->getCompressedIndexToWriteOnServer(comm_file);
1525
1526	isDistributed = domain->isDistributed();
1527	nbIndexes = domain->getNumberWrittenIndexes(comm_file);
1528	totalNbIndexes = domain->getTotalNumberWrittenIndexes(comm_file);
1529	offset = domain->getOffsetWrittenIndexes(comm_file);
1530	firstGlobalIndex = domain->ibegin + domain->jbegin * domain->ni_glo;
1531
1532	domain->addRelFileCompressed(this->filename);
1533	setWrittenCompressedDomain(domId);
1534	++idxDomain;
1535	}
1536	else if (1 == axisDomainOrder(i))
1537	{
1538	CAxis* axis = CAxis::get(axisList[idxAxis]);
1539	StdString axisId = axis->getAxisOutputName();
1540
1541	if (!axis->isCompressible()
1542	\|\| axis->isWrittenCompressed(this->filename)
1543	\|\| isWrittenCompressedAxis(axisId))
1544	continue;
1545
1546	varId = axisId + "_points";
1547	compress = axisId;
1548
1549	// indexes.resize(axis->compressedIndexToWriteOnServer.numElements());
1550	// indexes = axis->compressedIndexToWriteOnServer;
1551
1552	indexes.resize(axis->getCompressedIndexToWriteOnServer(comm_file).numElements());
1553	indexes = axis->getCompressedIndexToWriteOnServer(comm_file);
1554
1555	isDistributed = axis->isDistributed();
1556	nbIndexes = axis->getNumberWrittenIndexes(comm_file);
1557	totalNbIndexes = axis->getTotalNumberWrittenIndexes(comm_file);
1558	offset = axis->getOffsetWrittenIndexes(comm_file);
1559	firstGlobalIndex = axis->begin;
1560
1561	axis->addRelFileCompressed(this->filename);
1562	setWrittenCompressedAxis(axisId);
1563	++idxAxis;
1564	}
1565	else
1566	{
1567	}
1568
1569	if (!varId.empty())
1570	{
1571	SuperClassWriter::addDimension(varId, (SuperClass::type == MULTI_FILE) ? nbIndexes : totalNbIndexes);
1572
1573	dims.clear();
1574	dims.push_back(varId);
1575	SuperClassWriter::addVariable(varId, NC_INT, dims);
1576
1577	SuperClassWriter::addAttribute("compress", compress, &varId);
1578
1579	switch (SuperClass::type)
1580	{
1581	case (MULTI_FILE):
1582	{
1583	indexes -= firstGlobalIndex;
1584	SuperClassWriter::writeData(indexes, varId, isCollective, 0);
1585	break;
1586	}
1587	case (ONE_FILE):
1588	{
1589	std::vector<StdSize> start, count;
1590	start.push_back(offset);
1591	count.push_back(nbIndexes);
1592
1593	SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count);
1594	break;
1595	}
1596	}
1597	}
1598	}
1599	}
1600
1601	grid->addRelFileCompressed(this->filename);
1602	}
1603	catch (CNetCdfException& e)
1604	{
1605	StdString msg("On writing compressed grid : ");
1606	msg.append(grid->getId()); msg.append("\n");
1607	msg.append("In the context : ");
1608	CContext* context = CContext::getCurrent();
1609	msg.append(context->getId()); msg.append("\n");
1610	msg.append(e.what());
1611	ERROR("CNc4DataOutput::writeGridCompressed_(CGrid* grid)", << msg);
1612	}
1613	}
1614
1615	//--------------------------------------------------------------
1616
1617	void CNc4DataOutput::writeTimeDimension_(void)
1618	{
1619	try
1620	{
1621	SuperClassWriter::addDimension(getTimeCounterName());
1622	}
1623	catch (CNetCdfException& e)
1624	{
1625	StdString msg("On writing time dimension : time_couter\n");
1626	msg.append("In the context : ");
1627	CContext* context = CContext::getCurrent() ;
1628	msg.append(context->getId()); msg.append("\n");
1629	msg.append(e.what());
1630	ERROR("CNc4DataOutput::writeTimeDimension_(void)", << msg);
1631	}
1632	}
1633
1634	//--------------------------------------------------------------
1635
1636	void CNc4DataOutput::writeField_(CField* field)
1637	{
1638	CContext* context = CContext::getCurrent() ;
1639	CContextServer* server=context->server ;
1640
1641	std::vector<StdString> dims, coodinates;
1642	CGrid* grid = field->grid;
1643	if (!grid->doGridHaveDataToWrite())
1644	if (SuperClass::type==MULTI_FILE) return ;
1645
1646	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
1647	int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0;
1648	std::vector<StdString> domainList = grid->getDomainList();
1649	std::vector<StdString> axisList = grid->getAxisList();
1650	std::vector<StdString> scalarList = grid->getScalarList();
1651
1652	StdString timeid = getTimeCounterName();
1653	StdString dimXid,dimYid;
1654	std::deque<StdString> dimIdList, dimCoordList;
1655	bool hasArea = false;
1656	StdString cellMeasures = "area:";
1657	bool compressedOutput = !field->indexed_output.isEmpty() && field->indexed_output;
1658
1659	for (int i = 0; i < numElement; ++i)
1660	{
1661	if (2 == axisDomainOrder(i))
1662	{
1663	CDomain* domain = CDomain::get(domainList[idxDomain]);
1664	StdString domId = domain->getDomainOutputName();
1665	StdString appendDomId = singleDomain ? "" : "_" + domId ;
1666
1667	if (compressedOutput && domain->isCompressible() && domain->type != CDomain::type_attr::unstructured)
1668	{
1669	dimIdList.push_back(domId + "_points");
1670	field->setUseCompressedOutput();
1671	}
1672
1673	switch (domain->type)
1674	{
1675	case CDomain::type_attr::curvilinear:
1676	if (!compressedOutput \|\| !domain->isCompressible())
1677	{
1678	dimXid = StdString("x").append(appendDomId);
1679	dimIdList.push_back(dimXid);
1680	dimYid = StdString("y").append(appendDomId);
1681	dimIdList.push_back(dimYid);
1682	}
1683	dimCoordList.push_back(StdString("nav_lon").append(appendDomId));
1684	dimCoordList.push_back(StdString("nav_lat").append(appendDomId));
1685	break ;
1686	case CDomain::type_attr::rectilinear:
1687	if (!compressedOutput \|\| !domain->isCompressible())
1688	{
1689	dimXid = StdString("lon").append(appendDomId);
1690	dimIdList.push_back(dimXid);
1691	dimYid = StdString("lat").append(appendDomId);
1692	dimIdList.push_back(dimYid);
1693	}
1694	break ;
1695	case CDomain::type_attr::unstructured:
1696	{
1697	if (SuperClassWriter::useCFConvention)
1698	{
1699	dimXid = StdString("cell").append(appendDomId);
1700	dimIdList.push_back(dimXid);
1701	dimCoordList.push_back(StdString("lon").append(appendDomId));
1702	dimCoordList.push_back(StdString("lat").append(appendDomId));
1703	}
1704	else
1705	{
1706	StdString domainName = domain->name;
1707	if (domain->nvertex == 1)
1708	{
1709	dimXid = "n" + domainName + "_node";
1710	dimIdList.push_back(dimXid);
1711	dimCoordList.push_back(StdString(domainName + "_node_x"));
1712	dimCoordList.push_back(StdString(domainName + "_node_y"));
1713	}
1714	else if (domain->nvertex == 2)
1715	{
1716	dimXid = "n" + domainName + "_edge";
1717	dimIdList.push_back(dimXid);
1718	dimCoordList.push_back(StdString(domainName + "_edge_x"));
1719	dimCoordList.push_back(StdString(domainName + "_edge_y"));
1720	}
1721	else
1722	{
1723	dimXid = "n" + domainName + "_face";
1724	dimIdList.push_back(dimXid);
1725	dimCoordList.push_back(StdString(domainName + "_face_x"));
1726	dimCoordList.push_back(StdString(domainName + "_face_y"));
1727	}
1728	} // ugrid convention
1729	} // case unstructured domain
1730	}
1731
1732	if (domain->hasArea)
1733	{
1734	hasArea = true;
1735	cellMeasures += " area" + appendDomId;
1736	}
1737	++idxDomain;
1738	}
1739	else if (1 == axisDomainOrder(i))
1740	{
1741	CAxis* axis = CAxis::get(axisList[idxAxis]);
1742	StdString axisId = axis->getAxisOutputName();
1743
1744	if (compressedOutput && axis->isCompressible())
1745	{
1746	dimIdList.push_back(axisId + "_points");
1747	field->setUseCompressedOutput();
1748	}
1749	else
1750	dimIdList.push_back(axisId);
1751
1752	dimCoordList.push_back(axisId);
1753	++idxAxis;
1754	}
1755	else // scalar
1756	{
1757	/* Do nothing here */
1758	}
1759	}
1760
1761	StdString fieldid = field->getFieldOutputName();
1762
1763	nc_type type ;
1764	if (field->prec.isEmpty()) type = NC_FLOAT ;
1765	else
1766	{
1767	if (field->prec==2) type = NC_SHORT ;
1768	else if (field->prec==4) type = NC_FLOAT ;
1769	else if (field->prec==8) type = NC_DOUBLE ;
1770	}
1771
1772	bool wtime = !(!field->operation.isEmpty() && field->getOperationTimeType() == func::CFunctor::once);
1773
1774	if (wtime)
1775	{
1776	if (field->hasTimeInstant && hasTimeInstant) coodinates.push_back(string("time_instant"));
1777	else if (field->hasTimeCentered && hasTimeCentered) coodinates.push_back(string("time_centered"));
1778	dims.push_back(timeid);
1779	}
1780
1781	if (compressedOutput && grid->isCompressible())
1782	{
1783	dims.push_back(grid->getId() + "_points");
1784	field->setUseCompressedOutput();
1785	}
1786	else
1787	{
1788	while (!dimIdList.empty())
1789	{
1790	dims.push_back(dimIdList.back());
1791	dimIdList.pop_back();
1792	}
1793	}
1794
1795	while (!dimCoordList.empty())
1796	{
1797	coodinates.push_back(dimCoordList.back());
1798	dimCoordList.pop_back();
1799	}
1800
1801	try
1802	{
1803	SuperClassWriter::addVariable(fieldid, type, dims);
1804
1805	if (!field->standard_name.isEmpty())
1806	SuperClassWriter::addAttribute
1807	("standard_name", field->standard_name.getValue(), &fieldid);
1808
1809	if (!field->long_name.isEmpty())
1810	SuperClassWriter::addAttribute
1811	("long_name", field->long_name.getValue(), &fieldid);
1812
1813	if (!field->unit.isEmpty())
1814	SuperClassWriter::addAttribute
1815	("units", field->unit.getValue(), &fieldid);
1816
1817	// Ugrid field attributes "mesh" and "location"
1818	if (!SuperClassWriter::useCFConvention)
1819	{
1820	if (!domainList.empty())
1821	{
1822	CDomain* domain = CDomain::get(domainList[0]); // Suppose that we have only domain
1823	StdString mesh = domain->name;
1824	SuperClassWriter::addAttribute("mesh", mesh, &fieldid);
1825	StdString location;
1826	if (domain->nvertex == 1)
1827	location = "node";
1828	else if (domain->nvertex == 2)
1829	location = "edge";
1830	else if (domain->nvertex > 2)
1831	location = "face";
1832	SuperClassWriter::addAttribute("location", location, &fieldid);
1833	}
1834
1835	}
1836
1837	if (!field->valid_min.isEmpty())
1838	SuperClassWriter::addAttribute
1839	("valid_min", field->valid_min.getValue(), &fieldid);
1840
1841	if (!field->valid_max.isEmpty())
1842	SuperClassWriter::addAttribute
1843	("valid_max", field->valid_max.getValue(), &fieldid);
1844
1845	if (!field->scale_factor.isEmpty())
1846	SuperClassWriter::addAttribute
1847	("scale_factor", field->scale_factor.getValue(), &fieldid);
1848
1849	if (!field->add_offset.isEmpty())
1850	SuperClassWriter::addAttribute
1851	("add_offset", field->add_offset.getValue(), &fieldid);
1852
1853	SuperClassWriter::addAttribute
1854	("online_operation", field->operation.getValue(), &fieldid);
1855
1856	// write child variables as attributes
1857
1858
1859	bool alreadyAddCellMethod = false;
1860	StdString cellMethodsPrefix(""), cellMethodsSuffix("");
1861	if (!field->cell_methods.isEmpty())
1862	{
1863	StdString cellMethodString = field->cell_methods;
1864	if (field->cell_methods_mode.isEmpty() \|\|
1865	(CField::cell_methods_mode_attr::overwrite == field->cell_methods_mode))
1866	{
1867	SuperClassWriter::addAttribute("cell_methods", cellMethodString, &fieldid);
1868	alreadyAddCellMethod = true;
1869	}
1870	else
1871	{
1872	switch (field->cell_methods_mode)
1873	{
1874	case (CField::cell_methods_mode_attr::prefix):
1875	cellMethodsPrefix = cellMethodString;
1876	cellMethodsPrefix += " ";
1877	break;
1878	case (CField::cell_methods_mode_attr::suffix):
1879	cellMethodsSuffix = " ";
1880	cellMethodsSuffix += cellMethodString;
1881	break;
1882	case (CField::cell_methods_mode_attr::none):
1883	break;
1884	default:
1885	break;
1886	}
1887	}
1888	}
1889
1890
1891	if (wtime)
1892	{
1893	CDuration freqOp = field->freq_op.getValue();
1894	freqOp.solveTimeStep(*context->calendar);
1895	StdString freqOpStr = freqOp.toStringUDUnits();
1896	SuperClassWriter::addAttribute("interval_operation", freqOpStr, &fieldid);
1897
1898	CDuration freqOut = field->getRelFile()->output_freq.getValue();
1899	freqOut.solveTimeStep(*context->calendar);
1900	SuperClassWriter::addAttribute("interval_write", freqOut.toStringUDUnits(), &fieldid);
1901
1902	StdString cellMethods(cellMethodsPrefix + "time: ");
1903	if (field->operation.getValue() == "instant") cellMethods += "point";
1904	else if (field->operation.getValue() == "average") cellMethods += "mean";
1905	else if (field->operation.getValue() == "accumulate") cellMethods += "sum";
1906	else cellMethods += field->operation;
1907	if (freqOp.resolve(context->calendar) != freqOut.resolve(context->calendar))
1908	cellMethods += " (interval: " + freqOpStr + ")";
1909	cellMethods += cellMethodsSuffix;
1910	if (!alreadyAddCellMethod)
1911	SuperClassWriter::addAttribute("cell_methods", cellMethods, &fieldid);
1912	}
1913
1914	if (hasArea)
1915	SuperClassWriter::addAttribute("cell_measures", cellMeasures, &fieldid);
1916
1917	if (!field->default_value.isEmpty())
1918	{
1919	double default_value = field->default_value.getValue();
1920	float fdefault_value = (float)default_value;
1921	if (type == NC_DOUBLE)
1922	SuperClassWriter::setDefaultValue(fieldid, &default_value);
1923	else
1924	SuperClassWriter::setDefaultValue(fieldid, &fdefault_value);
1925	}
1926	else
1927	SuperClassWriter::setDefaultValue(fieldid, (double*)NULL);
1928
1929	if (field->compression_level.isEmpty())
1930	field->compression_level = field->file->compression_level.isEmpty() ? 0 : field->file->compression_level;
1931	SuperClassWriter::setCompressionLevel(fieldid, field->compression_level);
1932
1933	{ // Ecriture des coordonnes
1934
1935	StdString coordstr; //boost::algorithm::join(coodinates, " ")
1936	std::vector<StdString>::iterator
1937	itc = coodinates.begin(), endc = coodinates.end();
1938
1939	for (; itc!= endc; itc++)
1940	{
1941	StdString & coord = *itc;
1942	if (itc+1 != endc)
1943	coordstr.append(coord).append(" ");
1944	else coordstr.append(coord);
1945	}
1946
1947	SuperClassWriter::addAttribute("coordinates", coordstr, &fieldid);
1948
1949	}
1950
1951	vector<CVariable*> listVars = field->getAllVariables() ;
1952	for (vector<CVariable>::iterator it = listVars.begin() ;it != listVars.end(); it++) writeAttribute_(it, fieldid) ;
1953
1954	}
1955	catch (CNetCdfException& e)
1956	{
1957	StdString msg("On writing field : ");
1958	msg.append(fieldid); msg.append("\n");
1959	msg.append("In the context : ");
1960	msg.append(context->getId()); msg.append("\n");
1961	msg.append(e.what());
1962	ERROR("CNc4DataOutput::writeField_(CField* field)", << msg);
1963	}
1964	} // writeField_()
1965
1966	//--------------------------------------------------------------
1967
1968	void CNc4DataOutput::writeFile_ (CFile* file)
1969	{
1970	StdString filename = file->getFileOutputName();
1971	StdString description = (!file->description.isEmpty())
1972	? file->description.getValue()
1973	: StdString("Created by xios");
1974
1975	singleDomain = (file->nbDomains == 1);
1976
1977	StdString conv_str ;
1978	if (file->convention_str.isEmpty())
1979	{
1980	if (SuperClassWriter::useCFConvention) conv_str="CF-1.6" ;
1981	else conv_str="UGRID" ;
1982	}
1983	else conv_str=file->convention_str ;
1984
1985	try
1986	{
1987	if (!appendMode) this->writeFileAttributes(filename, description,
1988	conv_str,
1989	StdString("An IPSL model"),
1990	this->getTimeStamp());
1991
1992	if (!appendMode)
1993	SuperClassWriter::addDimension("axis_nbounds", 2);
1994	}
1995	catch (CNetCdfException& e)
1996	{
1997	StdString msg("On writing file : ");
1998	msg.append(filename); msg.append("\n");
1999	msg.append("In the context : ");
2000	CContext* context = CContext::getCurrent() ;
2001	msg.append(context->getId()); msg.append("\n");
2002	msg.append(e.what());
2003	ERROR("CNc4DataOutput::writeFile_ (CFile* file)", << msg);
2004	}
2005	}
2006
2007	void CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)
2008	{
2009	StdString name = var->getVariableOutputName();
2010
2011	try
2012	{
2013	if (var->type.getValue() == CVariable::type_attr::t_int \|\| var->type.getValue() == CVariable::type_attr::t_int32)
2014	addAttribute(name, var->getData<int>(), &fieldId);
2015	else if (var->type.getValue() == CVariable::type_attr::t_int16)
2016	addAttribute(name, var->getData<short int>(), &fieldId);
2017	else if (var->type.getValue() == CVariable::type_attr::t_float)
2018	addAttribute(name, var->getData<float>(), &fieldId);
2019	else if (var->type.getValue() == CVariable::type_attr::t_double)
2020	addAttribute(name, var->getData<double>(), &fieldId);
2021	else if (var->type.getValue() == CVariable::type_attr::t_string)
2022	addAttribute(name, var->getData<string>(), &fieldId);
2023	else
2024	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)",
2025	<< "Unsupported variable of type " << var->type.getStringValue());
2026	}
2027	catch (CNetCdfException& e)
2028	{
2029	StdString msg("On writing attributes of variable with name : ");
2030	msg.append(name); msg.append("in the field "); msg.append(fieldId); msg.append("\n");
2031	msg.append("In the context : ");
2032	CContext* context = CContext::getCurrent() ;
2033	msg.append(context->getId()); msg.append("\n");
2034	msg.append(e.what());
2035	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", << msg);
2036	}
2037	}
2038
2039	void CNc4DataOutput::writeAttribute_ (CVariable* var)
2040	{
2041	StdString name = var->getVariableOutputName();
2042
2043	try
2044	{
2045	if (var->type.getValue() == CVariable::type_attr::t_int \|\| var->type.getValue() == CVariable::type_attr::t_int32)
2046	addAttribute(name, var->getData<int>());
2047	else if (var->type.getValue() == CVariable::type_attr::t_int16)
2048	addAttribute(name, var->getData<short int>());
2049	else if (var->type.getValue() == CVariable::type_attr::t_float)
2050	addAttribute(name, var->getData<float>());
2051	else if (var->type.getValue() == CVariable::type_attr::t_double)
2052	addAttribute(name, var->getData<double>());
2053	else if (var->type.getValue() == CVariable::type_attr::t_string)
2054	addAttribute(name, var->getData<string>());
2055	else
2056	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)",
2057	<< "Unsupported variable of type " << var->type.getStringValue());
2058	}
2059	catch (CNetCdfException& e)
2060	{
2061	StdString msg("On writing attributes of variable with name : ");
2062	msg.append(name); msg.append("\n");
2063	msg.append("In the context : ");
2064	CContext* context = CContext::getCurrent() ;
2065	msg.append(context->getId()); msg.append("\n");
2066	msg.append(e.what());
2067	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", << msg);
2068	}
2069	}
2070
2071	void CNc4DataOutput::syncFile_ (void)
2072	{
2073	try
2074	{
2075	SuperClassWriter::sync() ;
2076	}
2077	catch (CNetCdfException& e)
2078	{
2079	StdString msg("On synchronizing the write among processes");
2080	msg.append("In the context : ");
2081	CContext* context = CContext::getCurrent() ;
2082	msg.append(context->getId()); msg.append("\n");
2083	msg.append(e.what());
2084	ERROR("CNc4DataOutput::syncFile_ (void)", << msg);
2085	}
2086	}
2087
2088	void CNc4DataOutput::closeFile_ (void)
2089	{
2090	try
2091	{
2092	SuperClassWriter::close() ;
2093	}
2094	catch (CNetCdfException& e)
2095	{
2096	StdString msg("On closing file");
2097	msg.append("In the context : ");
2098	CContext* context = CContext::getCurrent() ;
2099	msg.append(context->getId()); msg.append("\n");
2100	msg.append(e.what());
2101	ERROR("CNc4DataOutput::syncFile_ (void)", << msg);
2102	}
2103
2104	}
2105
2106	//---------------------------------------------------------------
2107
2108	StdString CNc4DataOutput::getTimeStamp(void) const
2109	{
2110	const int buffer_size = 100;
2111	time_t rawtime;
2112	struct tm * timeinfo = NULL;
2113	char buffer [buffer_size];
2114	StdString formatStr;
2115	if (file->time_stamp_format.isEmpty()) formatStr="%Y-%b-%d %H:%M:%S %Z" ;
2116	else formatStr=file->time_stamp_format;
2117
2118	// time ( &rawtime );
2119	// timeinfo = localtime ( &rawtime );
2120	time ( &rawtime );
2121	timeinfo = gmtime ( &rawtime );
2122	strftime (buffer, buffer_size, formatStr.c_str(), timeinfo);
2123
2124	return (StdString(buffer));
2125	}
2126
2127	//---------------------------------------------------------------
2128
2129	void CNc4DataOutput::writeFieldData_ (CField* field)
2130	{
2131	CContext* context = CContext::getCurrent();
2132	CContextServer* server = context->server;
2133	CGrid* grid = field->grid;
2134
2135	if (field->getNStep()<1)
2136	{
2137	return;
2138	}
2139
2140	if (!grid->doGridHaveDataToWrite())
2141	if (SuperClass::type == MULTI_FILE \|\| !isCollective)
2142	{
2143	return;
2144	}
2145
2146	StdString fieldid = field->getFieldOutputName();
2147
2148	StdOStringStream oss;
2149	string timeAxisId;
2150	if (field->hasTimeInstant) timeAxisId = "time_instant";
2151	else if (field->hasTimeCentered) timeAxisId = "time_centered";
2152
2153	StdString timeBoundId = getTimeCounterName() + "_bounds";
2154
2155	StdString timeAxisBoundId;
2156	if (field->hasTimeInstant) timeAxisBoundId = "time_instant_bounds";
2157	else if (field->hasTimeCentered) timeAxisBoundId = "time_centered_bounds";
2158
2159	if (!field->wasWritten())
2160	{
2161	if (appendMode && field->file->record_offset.isEmpty() &&
2162	field->getOperationTimeType() != func::CFunctor::once)
2163	{
2164	double factorUnit;
2165	if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days)
2166	factorUnit=context->getCalendar()->getDayLengthInSeconds() ;
2167	else factorUnit=1 ;
2168	field->resetNStep(getRecordFromTime(field->last_Write_srv,factorUnit) + 1);
2169	}
2170
2171	field->setWritten();
2172	}
2173
2174
2175	CArray<double,1> time_data(1);
2176	CArray<double,1> time_data_bound(2);
2177	CArray<double,1> time_counter(1);
2178	CArray<double,1> time_counter_bound(2);
2179
2180	bool wtime = (field->getOperationTimeType() != func::CFunctor::once);
2181	bool wtimeCounter =false ;
2182	bool wtimeData =false ;
2183
2184
2185	if (wtime)
2186	{
2187	Time lastWrite = field->last_Write_srv;
2188	Time lastLastWrite = field->lastlast_Write_srv;
2189
2190
2191	if (field->hasTimeInstant)
2192	{
2193	time_data(0) = time_data_bound(1) = lastWrite;
2194	time_data_bound(0) = time_data_bound(1) = lastWrite;
2195	if (timeCounterType==instant)
2196	{
2197	time_counter(0) = time_data(0);
2198	time_counter_bound(0) = time_data_bound(0);
2199	time_counter_bound(1) = time_data_bound(1);
2200	wtimeCounter=true ;
2201	}
2202	if (hasTimeInstant) wtimeData=true ;
2203	}
2204	else if (field->hasTimeCentered)
2205	{
2206	time_data(0) = (lastWrite + lastLastWrite) / 2;
2207	time_data_bound(0) = lastLastWrite;
2208	time_data_bound(1) = lastWrite;
2209	if (timeCounterType==centered)
2210	{
2211	time_counter(0) = time_data(0) ;
2212	time_counter_bound(0) = time_data_bound(0) ;
2213	time_counter_bound(1) = time_data_bound(1) ;
2214	wtimeCounter=true ;
2215	}
2216	if (hasTimeCentered) wtimeData=true ;
2217	}
2218
2219	if (timeCounterType==record)
2220	{
2221	time_counter(0) = field->getNStep() - 1;
2222	time_counter_bound(0) = time_counter_bound(1) = field->getNStep() - 1;
2223	wtimeCounter=true ;
2224	}
2225
2226	if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days)
2227	{
2228	double secByDay=context->getCalendar()->getDayLengthInSeconds() ;
2229	time_data/=secByDay;
2230	time_data_bound/=secByDay;
2231	time_counter/=secByDay;
2232	time_counter_bound/=secByDay;
2233	}
2234	}
2235
2236	bool isRoot = (server->intraCommRank == 0);
2237
2238	if (!field->scale_factor.isEmpty() \|\| !field->add_offset.isEmpty())
2239	{
2240	double scaleFactor = 1.0;
2241	double addOffset = 0.0;
2242	if (!field->scale_factor.isEmpty()) scaleFactor = field->scale_factor;
2243	if (!field->add_offset.isEmpty()) addOffset = field->add_offset;
2244	field->scaleFactorAddOffset(scaleFactor, addOffset);
2245	}
2246
2247	try
2248	{
2249	size_t writtenSize;
2250	if (field->getUseCompressedOutput())
2251	writtenSize = grid->getNumberWrittenIndexes();
2252	else
2253	writtenSize = grid->getWrittenDataSize();
2254
2255	CArray<double,1> fieldData(writtenSize);
2256	if (!field->default_value.isEmpty()) fieldData = field->default_value;
2257
2258	if (field->getUseCompressedOutput())
2259	field->outputCompressedField(fieldData);
2260	else
2261	field->outputField(fieldData);
2262
2263	if (!field->prec.isEmpty() && field->prec == 2) fieldData = round(fieldData);
2264
2265	switch (SuperClass::type)
2266	{
2267	case (MULTI_FILE) :
2268	{
2269	CTimer::get("Files : writing data").resume();
2270	SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1);
2271	CTimer::get("Files : writing data").suspend();
2272	if (wtime)
2273	{
2274	CTimer::get("Files : writing time axis").resume();
2275	if ( wtimeData)
2276	{
2277	// SuperClassWriter::writeData(time_data, timeAxisId, isCollective, field->getNStep() - 1);
2278	// SuperClassWriter::writeData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1);
2279	SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot);
2280	SuperClassWriter::writeTimeAxisDataBounds(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot);
2281	}
2282	if (wtimeCounter)
2283	{
2284	// SuperClassWriter::writeData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1);
2285	// if (timeCounterType!=record) SuperClassWriter::writeData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1);
2286	SuperClassWriter::writeTimeAxisData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1,isRoot);
2287	if (timeCounterType!=record) SuperClassWriter::writeTimeAxisDataBounds(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot);
2288	}
2289	CTimer::get("Files : writing time axis").suspend();
2290	}
2291	break;
2292	}
2293	case (ONE_FILE) :
2294	{
2295	const std::vector<int>& nZoomBeginGlobal = grid->getDistributionServer()->getZoomBeginGlobal();
2296	const std::vector<int>& nZoomBeginServer = grid->getDistributionServer()->getZoomBeginServer();
2297	const std::vector<int>& nZoomSizeServer = grid->getDistributionServer()->getZoomSizeServer();
2298
2299	std::vector<StdSize> start, count;
2300
2301	if (field->getUseCompressedOutput())
2302	{
2303	if (grid->isCompressible())
2304	{
2305	start.push_back(grid->getOffsetWrittenIndexes());
2306	count.push_back(grid->getNumberWrittenIndexes());
2307	}
2308	else
2309	{
2310	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
2311	std::vector<StdString> domainList = grid->getDomainList();
2312	std::vector<StdString> axisList = grid->getAxisList();
2313	int numElement = axisDomainOrder.numElements();
2314	int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1;
2315	int idx = nZoomBeginGlobal.size() - 1;
2316
2317	start.reserve(nZoomBeginGlobal.size());
2318	count.reserve(nZoomBeginGlobal.size());
2319
2320
2321	for (int i = numElement - 1; i >= 0; --i)
2322	{
2323	if (2 == axisDomainOrder(i))
2324	{
2325	CDomain* domain = CDomain::get(domainList[idxDomain]);
2326
2327	if (domain->isCompressible())
2328	{
2329	start.push_back(domain->getOffsetWrittenIndexes(comm_file));
2330	count.push_back(domain->getNumberWrittenIndexes(comm_file));
2331	idx -= 2;
2332	}
2333	else
2334	{
2335	if ((domain->type) != CDomain::type_attr::unstructured)
2336	{
2337	start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2338	count.push_back(nZoomSizeServer[idx]);
2339	}
2340	--idx;
2341	start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2342	count.push_back(nZoomSizeServer[idx]);
2343	--idx;
2344	}
2345	--idxDomain;
2346	}
2347	else if (1 == axisDomainOrder(i))
2348	{
2349	CAxis* axis = CAxis::get(axisList[idxAxis]);
2350
2351	if (axis->isCompressible())
2352	{
2353	start.push_back(axis->getOffsetWrittenIndexes(comm_file));
2354	count.push_back(axis->getNumberWrittenIndexes(comm_file));
2355	}
2356	else
2357	{
2358	start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2359	count.push_back(nZoomSizeServer[idx]);
2360	}
2361
2362	--idxAxis;
2363	--idx;
2364	}
2365	}
2366	}
2367	}
2368	else
2369	{
2370	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
2371	std::vector<StdString> domainList = grid->getDomainList();
2372	std::vector<StdString> axisList = grid->getAxisList();
2373	int numElement = axisDomainOrder.numElements();
2374	int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1;
2375	int idx = domainList.size() * 2 + axisList.size() - 1;// nZoomBeginGlobal.size() - 1;
2376
2377	start.reserve(nZoomBeginGlobal.size());
2378	count.reserve(nZoomBeginGlobal.size());
2379
2380	for (int i = numElement - 1; i >= 0; --i)
2381	{
2382	if (2 == axisDomainOrder(i))
2383	{
2384	CDomain* domain = CDomain::get(domainList[idxDomain]);
2385	if ((domain->type) != CDomain::type_attr::unstructured)
2386	{
2387	start.push_back(domain->zoom_jbegin - domain->global_zoom_jbegin);
2388	count.push_back(domain->zoom_nj);
2389	}
2390	--idx ;
2391
2392	start.push_back(domain->zoom_ibegin - domain->global_zoom_ibegin);
2393	count.push_back(domain->zoom_ni);
2394	--idx ;
2395	--idxDomain;
2396	}
2397	else if (1 == axisDomainOrder(i))
2398	{
2399	CAxis* axis = CAxis::get(axisList[idxAxis]);
2400	start.push_back(axis->zoom_begin - axis->global_zoom_begin);
2401	count.push_back(axis->zoom_n);
2402	--idx;
2403	--idxAxis;
2404	}
2405	else
2406	{
2407	if (1 == axisDomainOrder.numElements())
2408	{
2409	start.push_back(0);
2410	count.push_back(1);
2411	}
2412	--idx;
2413	}
2414	}
2415	}
2416
2417
2418	CTimer::get("Files : writing data").resume();
2419	SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1, &start, &count);
2420	CTimer::get("Files : writing data").suspend();
2421
2422	if (wtime)
2423	{
2424	CTimer::get("Files : writing time axis").resume();
2425	if ( wtimeData)
2426	{
2427	// SuperClassWriter::writeData(time_data, timeAxisId, isCollective, field->getNStep() - 1);
2428	// SuperClassWriter::writeData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1);
2429	SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot);
2430	SuperClassWriter::writeTimeAxisDataBounds(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot);
2431	}
2432	if (wtimeCounter)
2433	{
2434	// SuperClassWriter::writeData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1);
2435	// if (timeCounterType!=record) SuperClassWriter::writeData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1);
2436	SuperClassWriter::writeTimeAxisData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1,isRoot);
2437	if (timeCounterType!=record) SuperClassWriter::writeTimeAxisDataBounds(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot);
2438
2439	}
2440	CTimer::get("Files : writing time axis").suspend();
2441	}
2442
2443	break;
2444	}
2445	}
2446	}
2447	catch (CNetCdfException& e)
2448	{
2449	StdString msg("On writing field data: ");
2450	msg.append(fieldid); msg.append("\n");
2451	msg.append("In the context : ");
2452	msg.append(context->getId()); msg.append("\n");
2453	msg.append(e.what());
2454	ERROR("CNc4DataOutput::writeFieldData_ (CField* field)", << msg);
2455	}
2456	}
2457
2458	//---------------------------------------------------------------
2459
2460	void CNc4DataOutput::writeTimeAxis_
2461	(CField* field,
2462	const boost::shared_ptr<CCalendar> cal)
2463	{
2464	StdOStringStream oss;
2465	bool createInstantAxis=false ;
2466	bool createCenteredAxis=false ;
2467	bool createTimeCounterAxis=false ;
2468
2469	if (field->getOperationTimeType() == func::CFunctor::once) return ;
2470
2471
2472	StdString axisId ;
2473	StdString axisBoundId;
2474	StdString timeid(getTimeCounterName());
2475	StdString timeBoundId("axis_nbounds");
2476
2477	StdString strTimeUnits ;
2478	if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days) strTimeUnits="days since " ;
2479	else strTimeUnits="seconds since " ;
2480
2481	if (field->getOperationTimeType() == func::CFunctor::instant) field->hasTimeInstant = true;
2482	if (field->getOperationTimeType() == func::CFunctor::centered) field->hasTimeCentered = true;
2483
2484
2485	if (field->file->time_counter.isEmpty())
2486	{
2487	if (timeCounterType==none) createTimeCounterAxis=true ;
2488	if (field->hasTimeCentered)
2489	{
2490	timeCounterType=centered ;
2491	if (!hasTimeCentered) createCenteredAxis=true ;
2492	}
2493	if (field->hasTimeInstant)
2494	{
2495	if (timeCounterType==none) timeCounterType=instant ;
2496	if (!hasTimeInstant) createInstantAxis=true ;
2497	}
2498	}
2499	else if (field->file->time_counter==CFile::time_counter_attr::instant)
2500	{
2501	if (field->hasTimeCentered)
2502	{
2503	if (!hasTimeCentered) createCenteredAxis=true ;
2504	}
2505	if (field->hasTimeInstant)
2506	{
2507	if (timeCounterType==none) createTimeCounterAxis=true ;
2508	timeCounterType=instant ;
2509	if (!hasTimeInstant) createInstantAxis=true ;
2510	}
2511	}
2512	else if (field->file->time_counter==CFile::time_counter_attr::centered)
2513	{
2514	if (field->hasTimeCentered)
2515	{
2516	if (timeCounterType==none) createTimeCounterAxis=true ;
2517	timeCounterType=centered ;
2518	if (!hasTimeCentered) createCenteredAxis=true ;
2519	}
2520	if (field->hasTimeInstant)
2521	{
2522	if (!hasTimeInstant) createInstantAxis=true ;
2523	}
2524	}
2525	else if (field->file->time_counter==CFile::time_counter_attr::instant_exclusive)
2526	{
2527	if (field->hasTimeCentered)
2528	{
2529	if (!hasTimeCentered) createCenteredAxis=true ;
2530	}
2531	if (field->hasTimeInstant)
2532	{
2533	if (timeCounterType==none) createTimeCounterAxis=true ;
2534	timeCounterType=instant ;
2535	}
2536	}
2537	else if (field->file->time_counter==CFile::time_counter_attr::centered_exclusive)
2538	{
2539	if (field->hasTimeCentered)
2540	{
2541	if (timeCounterType==none) createTimeCounterAxis=true ;
2542	timeCounterType=centered ;
2543	}
2544	if (field->hasTimeInstant)
2545	{
2546	if (!hasTimeInstant) createInstantAxis=true ;
2547	}
2548	}
2549	else if (field->file->time_counter==CFile::time_counter_attr::exclusive)
2550	{
2551	if (field->hasTimeCentered)
2552	{
2553	if (timeCounterType==none) createTimeCounterAxis=true ;
2554	if (timeCounterType==instant) createInstantAxis=true ;
2555	timeCounterType=centered ;
2556	}
2557	if (field->hasTimeInstant)
2558	{
2559	if (timeCounterType==none)
2560	{
2561	createTimeCounterAxis=true ;
2562	timeCounterType=instant ;
2563	}
2564	if (timeCounterType==centered)
2565	{
2566	if (!hasTimeInstant) createInstantAxis=true ;
2567	}
2568	}
2569	}
2570	else if (field->file->time_counter==CFile::time_counter_attr::none)
2571	{
2572	if (field->hasTimeCentered)
2573	{
2574	if (!hasTimeCentered) createCenteredAxis=true ;
2575	}
2576	if (field->hasTimeInstant)
2577	{
2578	if (!hasTimeInstant) createInstantAxis=true ;
2579	}
2580	}
2581	else if (field->file->time_counter==CFile::time_counter_attr::record)
2582	{
2583	if (timeCounterType==none) createTimeCounterAxis=true ;
2584	timeCounterType=record ;
2585	if (field->hasTimeCentered)
2586	{
2587	if (!hasTimeCentered) createCenteredAxis=true ;
2588	}
2589	if (field->hasTimeInstant)
2590	{
2591	if (!hasTimeInstant) createInstantAxis=true ;
2592	}
2593	}
2594
2595	if (createInstantAxis)
2596	{
2597	axisId="time_instant" ;
2598	axisBoundId="time_instant_bounds";
2599	hasTimeInstant=true ;
2600	}
2601
2602	if (createCenteredAxis)
2603	{
2604	axisId="time_centered" ;
2605	axisBoundId="time_centered_bounds";
2606	hasTimeCentered=true ;
2607	}
2608
2609
2610	try
2611	{
2612	std::vector<StdString> dims;
2613
2614	if (createInstantAxis \|\| createCenteredAxis)
2615	{
2616	// Adding time_instant or time_centered
2617	dims.push_back(timeid);
2618	if (!SuperClassWriter::varExist(axisId))
2619	{
2620	SuperClassWriter::addVariable(axisId, NC_DOUBLE, dims);
2621
2622	CDate timeOrigin=cal->getTimeOrigin() ;
2623	StdOStringStream oss2;
2624	StdString strInitdate=oss2.str() ;
2625	StdString strTimeOrigin=timeOrigin.toString() ;
2626	this->writeTimeAxisAttributes(axisId, cal->getType(),strTimeUnits+strTimeOrigin,
2627	strTimeOrigin, axisBoundId);
2628	}
2629
2630	// Adding time_instant_bounds or time_centered_bounds variables
2631	if (!SuperClassWriter::varExist(axisBoundId))
2632	{
2633	dims.clear() ;
2634	dims.push_back(timeid);
2635	dims.push_back(timeBoundId);
2636	SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims);
2637	}
2638	}
2639
2640	if (createTimeCounterAxis)
2641	{
2642	// Adding time_counter
2643	axisId = getTimeCounterName();
2644	axisBoundId = getTimeCounterName() + "_bounds";
2645	dims.clear();
2646	dims.push_back(timeid);
2647	if (!SuperClassWriter::varExist(axisId))
2648	{
2649	SuperClassWriter::addVariable(axisId, NC_DOUBLE, dims);
2650	SuperClassWriter::addAttribute("axis", string("T"), &axisId);
2651
2652	if (field->file->time_counter.isEmpty() \|\|
2653	(field->file->time_counter != CFile::time_counter_attr::record))
2654	{
2655	CDate timeOrigin = cal->getTimeOrigin();
2656	StdString strTimeOrigin = timeOrigin.toString();
2657
2658	this->writeTimeAxisAttributes(axisId, cal->getType(),
2659	strTimeUnits+strTimeOrigin,
2660	strTimeOrigin, axisBoundId);
2661	}
2662	}
2663
2664	// Adding time_counter_bound dimension
2665	if (field->file->time_counter.isEmpty() \|\| (field->file->time_counter != CFile::time_counter_attr::record))
2666	{
2667	if (!SuperClassWriter::varExist(axisBoundId))
2668	{
2669	dims.clear();
2670	dims.push_back(timeid);
2671	dims.push_back(timeBoundId);
2672	SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims);
2673	}
2674	}
2675	}
2676	}
2677	catch (CNetCdfException& e)
2678	{
2679	StdString msg("On writing time axis data: ");
2680	msg.append("In the context : ");
2681	CContext* context = CContext::getCurrent() ;
2682	msg.append(context->getId()); msg.append("\n");
2683	msg.append(e.what());
2684	ERROR("CNc4DataOutput::writeTimeAxis_ (CField* field, \
2685	const boost::shared_ptr<CCalendar> cal)", << msg);
2686	}
2687	}
2688
2689	//---------------------------------------------------------------
2690
2691	void CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name,
2692	const StdString & calendar,
2693	const StdString & units,
2694	const StdString & time_origin,
2695	const StdString & time_bounds,
2696	const StdString & standard_name,
2697	const StdString & long_name)
2698	{
2699	try
2700	{
2701	SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name);
2702	SuperClassWriter::addAttribute("long_name", long_name , &axis_name);
2703	SuperClassWriter::addAttribute("calendar", calendar , &axis_name);
2704	SuperClassWriter::addAttribute("units", units , &axis_name);
2705	SuperClassWriter::addAttribute("time_origin", time_origin , &axis_name);
2706	SuperClassWriter::addAttribute("bounds", time_bounds , &axis_name);
2707	}
2708	catch (CNetCdfException& e)
2709	{
2710	StdString msg("On writing time axis Attribute: ");
2711	msg.append("In the context : ");
2712	CContext* context = CContext::getCurrent() ;
2713	msg.append(context->getId()); msg.append("\n");
2714	msg.append(e.what());
2715	ERROR("CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, \
2716	const StdString & calendar,\
2717	const StdString & units, \
2718	const StdString & time_origin, \
2719	const StdString & time_bounds, \
2720	const StdString & standard_name, \
2721	const StdString & long_name)", << msg);
2722	}
2723	}
2724
2725	//---------------------------------------------------------------
2726
2727	void CNc4DataOutput::writeAxisAttributes(const StdString & axis_name,
2728	const StdString & axis,
2729	const StdString & standard_name,
2730	const StdString & long_name,
2731	const StdString & units,
2732	const StdString & nav_model)
2733	{
2734	try
2735	{
2736	if (!axis.empty())
2737	SuperClassWriter::addAttribute("axis" , axis , &axis_name);
2738
2739	SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name);
2740	SuperClassWriter::addAttribute("long_name" , long_name , &axis_name);
2741	SuperClassWriter::addAttribute("units" , units , &axis_name);
2742	// SuperClassWriter::addAttribute("nav_model" , nav_model , &axis_name);
2743	}
2744	catch (CNetCdfException& e)
2745	{
2746	StdString msg("On writing Axis Attribute: ");
2747	msg.append("In the context : ");
2748	CContext* context = CContext::getCurrent() ;
2749	msg.append(context->getId()); msg.append("\n");
2750	msg.append(e.what());
2751	ERROR("CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, \
2752	const StdString & axis, \
2753	const StdString & standard_name, \
2754	const StdString & long_name, \
2755	const StdString & units, \
2756	const StdString & nav_model)", << msg);
2757	}
2758	}
2759
2760	//---------------------------------------------------------------
2761
2762	void CNc4DataOutput::writeLocalAttributes
2763	(int ibegin, int ni, int jbegin, int nj, StdString domid)
2764	{
2765	try
2766	{
2767	SuperClassWriter::addAttribute(StdString("ibegin").append(domid), ibegin);
2768	SuperClassWriter::addAttribute(StdString("ni" ).append(domid), ni);
2769	SuperClassWriter::addAttribute(StdString("jbegin").append(domid), jbegin);
2770	SuperClassWriter::addAttribute(StdString("nj" ).append(domid), nj);
2771	}
2772	catch (CNetCdfException& e)
2773	{
2774	StdString msg("On writing Local Attributes: ");
2775	msg.append("In the context : ");
2776	CContext* context = CContext::getCurrent() ;
2777	msg.append(context->getId()); msg.append("\n");
2778	msg.append(e.what());
2779	ERROR("CNc4DataOutput::writeLocalAttributes \
2780	(int ibegin, int ni, int jbegin, int nj, StdString domid)", << msg);
2781	}
2782
2783	}
2784
2785	void CNc4DataOutput::writeLocalAttributes_IOIPSL(const StdString& dimXid, const StdString& dimYid,
2786	int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)
2787	{
2788	CArray<int,1> array(2) ;
2789
2790	try
2791	{
2792	SuperClassWriter::addAttribute("DOMAIN_number_total",size ) ;
2793	SuperClassWriter::addAttribute("DOMAIN_number", rank) ;
2794	array = SuperClassWriter::getDimension(dimXid) + 1, SuperClassWriter::getDimension(dimYid) + 1;
2795	SuperClassWriter::addAttribute("DOMAIN_dimensions_ids",array) ;
2796	array=ni_glo,nj_glo ;
2797	SuperClassWriter::addAttribute("DOMAIN_size_global", array) ;
2798	array=ni,nj ;
2799	SuperClassWriter::addAttribute("DOMAIN_size_local", array) ;
2800	array=ibegin+1,jbegin+1 ;
2801	SuperClassWriter::addAttribute("DOMAIN_position_first", array) ;
2802	array=ibegin+ni-1+1,jbegin+nj-1+1 ;
2803	SuperClassWriter::addAttribute("DOMAIN_position_last",array) ;
2804	array=0,0 ;
2805	SuperClassWriter::addAttribute("DOMAIN_halo_size_start", array) ;
2806	SuperClassWriter::addAttribute("DOMAIN_halo_size_end", array);
2807	SuperClassWriter::addAttribute("DOMAIN_type",string("box")) ;
2808	/*
2809	SuperClassWriter::addAttribute("DOMAIN_DIM_N001",string("x")) ;
2810	SuperClassWriter::addAttribute("DOMAIN_DIM_N002",string("y")) ;
2811	SuperClassWriter::addAttribute("DOMAIN_DIM_N003",string("axis_A")) ;
2812	SuperClassWriter::addAttribute("DOMAIN_DIM_N004",string("time_counter")) ;
2813	*/
2814	}
2815	catch (CNetCdfException& e)
2816	{
2817	StdString msg("On writing Local Attributes IOIPSL \n");
2818	msg.append("In the context : ");
2819	CContext* context = CContext::getCurrent() ;
2820	msg.append(context->getId()); msg.append("\n");
2821	msg.append(e.what());
2822	ERROR("CNc4DataOutput::writeLocalAttributes_IOIPSL \
2823	(int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)", << msg);
2824	}
2825	}
2826	//---------------------------------------------------------------
2827
2828	void CNc4DataOutput:: writeFileAttributes(const StdString & name,
2829	const StdString & description,
2830	const StdString & conventions,
2831	const StdString & production,
2832	const StdString & timeStamp)
2833	{
2834	try
2835	{
2836	SuperClassWriter::addAttribute("name" , name);
2837	SuperClassWriter::addAttribute("description", description);
2838	SuperClassWriter::addAttribute("title" , description);
2839	SuperClassWriter::addAttribute("Conventions", conventions);
2840	// SuperClassWriter::addAttribute("production" , production);
2841
2842	StdString timeStampStr ;
2843	if (file->time_stamp_name.isEmpty()) timeStampStr="timeStamp" ;
2844	else timeStampStr=file->time_stamp_name ;
2845	SuperClassWriter::addAttribute(timeStampStr, timeStamp);
2846
2847	StdString uuidName ;
2848	if (file->uuid_name.isEmpty()) uuidName="uuid" ;
2849	else uuidName=file->uuid_name ;
2850
2851	if (file->uuid_format.isEmpty()) SuperClassWriter::addAttribute(uuidName, getUuidStr());
2852	else SuperClassWriter::addAttribute(uuidName, getUuidStr(file->uuid_format));
2853
2854	}
2855	catch (CNetCdfException& e)
2856	{
2857	StdString msg("On writing File Attributes \n ");
2858	msg.append("In the context : ");
2859	CContext* context = CContext::getCurrent() ;
2860	msg.append(context->getId()); msg.append("\n");
2861	msg.append(e.what());
2862	ERROR("CNc4DataOutput:: writeFileAttributes(const StdString & name, \
2863	const StdString & description, \
2864	const StdString & conventions, \
2865	const StdString & production, \
2866	const StdString & timeStamp)", << msg);
2867	}
2868	}
2869
2870	//---------------------------------------------------------------
2871
2872	void CNc4DataOutput::writeMaskAttributes(const StdString & mask_name,
2873	int data_dim,
2874	int data_ni,
2875	int data_nj,
2876	int data_ibegin,
2877	int data_jbegin)
2878	{
2879	try
2880	{
2881	SuperClassWriter::addAttribute("data_dim" , data_dim , &mask_name);
2882	SuperClassWriter::addAttribute("data_ni" , data_ni , &mask_name);
2883	SuperClassWriter::addAttribute("data_nj" , data_nj , &mask_name);
2884	SuperClassWriter::addAttribute("data_ibegin", data_ibegin, &mask_name);
2885	SuperClassWriter::addAttribute("data_jbegin", data_jbegin, &mask_name);
2886	}
2887	catch (CNetCdfException& e)
2888	{
2889	StdString msg("On writing Mask Attributes \n ");
2890	msg.append("In the context : ");
2891	CContext* context = CContext::getCurrent() ;
2892	msg.append(context->getId()); msg.append("\n");
2893	msg.append(e.what());
2894	ERROR("CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, \
2895	int data_dim, \
2896	int data_ni, \
2897	int data_nj, \
2898	int data_ibegin, \
2899	int data_jbegin)", << msg);
2900	}
2901	}
2902
2903	///--------------------------------------------------------------
2904
2905	StdSize CNc4DataOutput::getRecordFromTime(Time time, double factorUnit)
2906	{
2907	std::map<Time, StdSize>::const_iterator it = timeToRecordCache.find(time);
2908	if (it == timeToRecordCache.end())
2909	{
2910	StdString timeAxisBoundsId(getTimeCounterName() + "_bounds");
2911	if (!SuperClassWriter::varExist(timeAxisBoundsId)) timeAxisBoundsId = "time_centered_bounds";
2912	if (!SuperClassWriter::varExist(timeAxisBoundsId)) timeAxisBoundsId = "time_instant_bounds";
2913
2914	CArray<double,2> timeAxisBounds;
2915	std::vector<StdSize> dimSize(SuperClassWriter::getDimensions(timeAxisBoundsId)) ;
2916
2917	StdSize record = 0;
2918	double dtime(time);
2919	for (int n = dimSize[0] - 1; n >= 0; n--)
2920	{
2921	SuperClassWriter::getTimeAxisBounds(timeAxisBounds, timeAxisBoundsId, isCollective, n);
2922	timeAxisBounds*=factorUnit ;
2923	if (timeAxisBounds(1, 0) < dtime)
2924	{
2925	record = n + 1;
2926	break;
2927	}
2928	}
2929	it = timeToRecordCache.insert(std::make_pair(time, record)).first;
2930	}
2931	return it->second;
2932	}
2933
2934	///--------------------------------------------------------------
2935
2936	bool CNc4DataOutput::isWrittenDomain(const std::string& domainName) const
2937	{
2938	return (this->writtenDomains.find(domainName) != this->writtenDomains.end());
2939	}
2940
2941	bool CNc4DataOutput::isWrittenCompressedDomain(const std::string& domainName) const
2942	{
2943	return (this->writtenCompressedDomains.find(domainName) != this->writtenCompressedDomains.end());
2944	}
2945
2946	bool CNc4DataOutput::isWrittenAxis(const std::string& axisName) const
2947	{
2948	return (this->writtenAxis.find(axisName) != this->writtenAxis.end());
2949	}
2950
2951	bool CNc4DataOutput::isWrittenCompressedAxis(const std::string& axisName) const
2952	{
2953	return (this->writtenCompressedAxis.find(axisName) != this->writtenCompressedAxis.end());
2954	}
2955
2956	bool CNc4DataOutput::isWrittenScalar(const std::string& scalarName) const
2957	{
2958	return (this->writtenScalar.find(scalarName) != this->writtenScalar.end());
2959	}
2960
2961	void CNc4DataOutput::setWrittenDomain(const std::string& domainName)
2962	{
2963	this->writtenDomains.insert(domainName);
2964	}
2965
2966	void CNc4DataOutput::setWrittenCompressedDomain(const std::string& domainName)
2967	{
2968	this->writtenCompressedDomains.insert(domainName);
2969	}
2970
2971	void CNc4DataOutput::setWrittenAxis(const std::string& axisName)
2972	{
2973	this->writtenAxis.insert(axisName);
2974	}
2975
2976	void CNc4DataOutput::setWrittenCompressedAxis(const std::string& axisName)
2977	{
2978	this->writtenCompressedAxis.insert(axisName);
2979	}
2980
2981	void CNc4DataOutput::setWrittenScalar(const std::string& scalarName)
2982	{
2983	this->writtenScalar.insert(scalarName);
2984	}
2985	} // namespace xios

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