[591] | 1 | #ifndef __XIOS_CGrid__ |
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| 2 | #define __XIOS_CGrid__ |
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[219] | 3 | |
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[591] | 4 | /// XIOS headers /// |
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| 5 | #include "xios_spl.hpp" |
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[219] | 6 | #include "group_factory.hpp" |
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| 7 | |
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| 8 | #include "declare_group.hpp" |
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| 9 | #include "domain.hpp" |
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| 10 | #include "axis.hpp" |
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[887] | 11 | #include "scalar.hpp" |
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[369] | 12 | #include "array_new.hpp" |
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| 13 | #include "attribute_array.hpp" |
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[552] | 14 | #include "distribution_server.hpp" |
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[553] | 15 | #include "client_server_mapping.hpp" |
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[567] | 16 | #include "utils.hpp" |
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[619] | 17 | #include "transformation_enum.hpp" |
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[219] | 18 | |
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[335] | 19 | namespace xios { |
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[509] | 20 | |
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[219] | 21 | /// ////////////////////// Déclarations ////////////////////// /// |
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| 22 | |
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| 23 | class CGridGroup; |
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| 24 | class CGridAttributes; |
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[540] | 25 | class CDomainGroup; |
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| 26 | class CAxisGroup; |
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[887] | 27 | class CScalarGroup; |
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[219] | 28 | class CGrid; |
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[551] | 29 | class CDistributionClient; |
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[552] | 30 | class CDistributionServer; |
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[553] | 31 | class CServerDistributionDescription; |
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| 32 | class CClientServerMapping; |
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[620] | 33 | class CGridTransformation; |
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[219] | 34 | |
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| 35 | ///-------------------------------------------------------------- |
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| 36 | |
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| 37 | // Declare/Define CGridAttribute |
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| 38 | BEGIN_DECLARE_ATTRIBUTE_MAP(CGrid) |
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| 39 | # include "grid_attribute.conf" |
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| 40 | END_DECLARE_ATTRIBUTE_MAP(CGrid) |
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| 41 | |
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| 42 | ///-------------------------------------------------------------- |
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| 43 | |
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| 44 | class CGrid |
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| 45 | : public CObjectTemplate<CGrid> |
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| 46 | , public CGridAttributes |
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| 47 | { |
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| 48 | /// typedef /// |
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| 49 | typedef CObjectTemplate<CGrid> SuperClass; |
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| 50 | typedef CGridAttributes SuperClassAttribute; |
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| 51 | |
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[676] | 52 | public: |
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[219] | 53 | |
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| 54 | typedef CGridAttributes RelAttributes; |
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| 55 | typedef CGridGroup RelGroup; |
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| 56 | |
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[300] | 57 | enum EEventId |
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| 58 | { |
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[887] | 59 | EVENT_ID_INDEX, EVENT_ID_ADD_DOMAIN, EVENT_ID_ADD_AXIS, EVENT_ID_ADD_SCALAR |
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[650] | 60 | }; |
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[509] | 61 | |
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[219] | 62 | /// Constructeurs /// |
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| 63 | CGrid(void); |
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[650] | 64 | explicit CGrid(const StdString& id); |
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| 65 | CGrid(const CGrid& grid); // Not implemented yet. |
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| 66 | CGrid(const CGrid* const grid); // Not implemented yet. |
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[219] | 67 | |
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| 68 | /// Traitements /// |
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[509] | 69 | // void solveReference(void); |
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[219] | 70 | |
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[676] | 71 | void checkEligibilityForCompressedOutput(); |
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| 72 | |
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[509] | 73 | void solveDomainAxisRef(bool areAttributesChecked); |
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| 74 | |
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| 75 | void checkMaskIndex(bool doCalculateIndex); |
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| 76 | |
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[650] | 77 | // virtual void toBinary (StdOStream& os) const; |
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| 78 | // virtual void fromBinary(StdIStream& is); |
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[219] | 79 | |
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[676] | 80 | void addRelFileCompressed(const StdString& filename); |
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| 81 | |
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[219] | 82 | /// Tests /// |
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[676] | 83 | bool isCompressible(void) const; |
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| 84 | bool isWrittenCompressed(const StdString& filename) const; |
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[219] | 85 | |
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[676] | 86 | public: |
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[219] | 87 | |
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| 88 | /// Accesseurs /// |
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[1158] | 89 | StdSize getDimension(void); |
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[509] | 90 | |
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[286] | 91 | StdSize getDataSize(void) const; |
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[219] | 92 | |
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[1144] | 93 | /// Entrées-sorties de champs |
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[369] | 94 | template <int n> |
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[593] | 95 | void inputField(const CArray<double,n>& field, CArray<double,1>& stored) const; |
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| 96 | template <int n> |
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[1250] | 97 | void outputField(const CArray<double,1>& stored, CArray<double,n>& field) const; |
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| 98 | template <int n> |
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| 99 | void uncompressField(const CArray<double,n>& data, CArray<double,1>& outData) const; |
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[509] | 100 | |
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[650] | 101 | virtual void parse(xml::CXMLNode& node); |
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[540] | 102 | |
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[219] | 103 | /// Destructeur /// |
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| 104 | virtual ~CGrid(void); |
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| 105 | |
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[676] | 106 | public: |
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[219] | 107 | |
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| 108 | /// Accesseurs statiques /// |
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| 109 | static StdString GetName(void); |
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| 110 | static StdString GetDefName(void); |
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[509] | 111 | |
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[219] | 112 | static ENodeType GetType(void); |
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| 113 | |
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| 114 | /// Instanciateurs Statiques /// |
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[347] | 115 | static CGrid* createGrid(CDomain* domain); |
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| 116 | static CGrid* createGrid(CDomain* domain, CAxis* axis); |
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[745] | 117 | static CGrid* createGrid(const std::vector<CDomain*>& domains, const std::vector<CAxis*>& axis, |
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[887] | 118 | const CArray<int,1>& axisDomainOrder = CArray<int,1>()); |
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[745] | 119 | static CGrid* createGrid(StdString id, const std::vector<CDomain*>& domains, const std::vector<CAxis*>& axis, |
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[887] | 120 | const std::vector<CScalar*>& scalars, const CArray<int,1>& axisDomainOrder = CArray<int,1>()); |
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| 121 | static CGrid* createGrid(const std::vector<CDomain*>& domains, const std::vector<CAxis*>& axis, |
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| 122 | const std::vector<CScalar*>& scalars, const CArray<int,1>& axisDomainOrder); |
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[745] | 123 | static StdString generateId(const std::vector<CDomain*>& domains, const std::vector<CAxis*>& axis, |
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[887] | 124 | const std::vector<CScalar*>& scalars, const CArray<int,1>& axisDomainOrder = CArray<int,1>()); |
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[823] | 125 | static StdString generateId(const CGrid* gridSrc, const CGrid* gridDest); |
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| 126 | static CGrid* cloneGrid(const StdString& idNewGrid, CGrid* gridSrc); |
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[219] | 127 | |
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[1144] | 128 | public: |
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[219] | 129 | void computeIndexServer(void); |
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| 130 | void computeIndex(void); |
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[586] | 131 | void computeIndexScalarGrid(); |
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[1129] | 132 | void computeWrittenIndex(); |
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[219] | 133 | |
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[509] | 134 | void solveDomainRef(bool checkAtt); |
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| 135 | void solveAxisRef(bool checkAtt); |
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[887] | 136 | void solveScalarRef(bool checkAtt); |
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[540] | 137 | void solveDomainAxisRefInheritance(bool apply = true); |
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[619] | 138 | void solveTransformations(); |
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[775] | 139 | void solveDomainAxisBaseRef(); |
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[509] | 140 | |
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[835] | 141 | CDomain* addDomain(const std::string& id=StdString()); |
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| 142 | CAxis* addAxis(const std::string& id=StdString()); |
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[887] | 143 | CScalar* addScalar(const std::string& id=StdString()); |
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[540] | 144 | void sendAddDomain(const std::string& id=""); |
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| 145 | void sendAddAxis(const std::string& id=""); |
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[887] | 146 | void sendAddScalar(const std::string& id=""); |
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[540] | 147 | void sendAllDomains(); |
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| 148 | void sendAllAxis(); |
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[887] | 149 | void sendAllScalars(); |
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[540] | 150 | |
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[650] | 151 | static void recvAddDomain(CEventServer& event); |
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| 152 | void recvAddDomain(CBufferIn& buffer); |
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| 153 | static void recvAddAxis(CEventServer& event); |
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| 154 | void recvAddAxis(CBufferIn& buffer); |
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[887] | 155 | static void recvAddScalar(CEventServer& event); |
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| 156 | void recvAddScalar(CBufferIn& buffer); |
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[540] | 157 | |
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[650] | 158 | static bool dispatchEvent(CEventServer& event); |
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| 159 | static void recvIndex(CEventServer& event); |
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| 160 | void recvIndex(vector<int> ranks, vector<CBufferIn*> buffers); |
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| 161 | void sendIndex(void); |
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[586] | 162 | void sendIndexScalarGrid(); |
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[509] | 163 | |
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| 164 | void computeDomConServer(); |
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| 165 | std::map<int, int> getDomConServerSide(); |
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[1236] | 166 | std::map<int, StdSize> getAttributesBufferSize(CContextClient* client); |
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| 167 | std::map<int, StdSize> getDataBufferSize(CContextClient* client, const std::string& id = ""); |
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[540] | 168 | std::vector<StdString> getDomainList(); |
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| 169 | std::vector<StdString> getAxisList(); |
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[887] | 170 | std::vector<StdString> getScalarList(); |
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[540] | 171 | std::vector<CDomain*> getDomains(); |
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| 172 | std::vector<CAxis*> getAxis(); |
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[887] | 173 | std::vector<CScalar*> getScalars(); |
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[943] | 174 | CDomain* getDomain(int domainIndex); |
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| 175 | CAxis* getAxis(int axisIndex); |
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| 176 | CScalar* getScalar(int scalarIndex); |
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[551] | 177 | std::vector<int> getAxisOrder(); |
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[567] | 178 | std::vector<int> getGlobalDimension(); |
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[1236] | 179 | bool isScalarGrid() const; |
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[540] | 180 | |
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[567] | 181 | bool doGridHaveDataToWrite(); |
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[1235] | 182 | bool doGridHaveDataDistributed(CContextClient* client = 0); |
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[567] | 183 | size_t getWrittenDataSize() const; |
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[676] | 184 | int getNumberWrittenIndexes() const; |
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| 185 | int getTotalNumberWrittenIndexes() const; |
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| 186 | int getOffsetWrittenIndexes() const; |
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[567] | 187 | |
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[834] | 188 | CDistributionServer* getDistributionServer(); |
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| 189 | CDistributionClient* getDistributionClient(); |
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[620] | 190 | CGridTransformation* getTransformations(); |
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[567] | 191 | |
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[632] | 192 | void transformGrid(CGrid* transformGridSrc); |
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[775] | 193 | void completeGrid(CGrid* transformGridSrc = 0); |
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[687] | 194 | void doAutoDistribution(CGrid* transformGridSrc); |
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[619] | 195 | bool isTransformed(); |
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| 196 | void setTransformed(); |
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[890] | 197 | bool isGenerated(); |
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| 198 | void setGenerated(); |
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[823] | 199 | void addTransGridSource(CGrid* gridSrc); |
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| 200 | std::map<CGrid*, std::pair<bool,StdString> >& getTransGridSource(); |
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[824] | 201 | bool hasTransform(); |
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[1215] | 202 | size_t getGlobalWrittenSize(void) ; |
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[1236] | 203 | |
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[219] | 204 | public: |
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[650] | 205 | CArray<int, 1> storeIndex_client; |
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[509] | 206 | |
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[1263] | 207 | /** Map containing indexes that will be sent in sendIndex(). */ |
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[1243] | 208 | std::map<CContextClient*, map<int, CArray<int, 1> > > storeIndex_toSrv; |
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| 209 | |
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[1263] | 210 | /** Map storing the number of senders. Key = size of receiver's intracomm */ |
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| 211 | std::map<int, std::map<int,int> > nbSenders; |
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| 212 | |
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| 213 | std::map<CContextClient*, std::map<int,int> > nbReadSenders; |
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| 214 | |
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[1236] | 215 | map<int, CArray<int, 1> > storeIndex_fromSrv; // Support, for now, reading with level-1 server |
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[1243] | 216 | |
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| 217 | |
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[1129] | 218 | map<int, CArray<size_t, 1> > outIndexFromClient, compressedOutIndexFromClient, outGlobalIndexFromClient; |
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| 219 | |
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| 220 | // A client receives global index from other clients (via recvIndex) |
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| 221 | // then does mapping these index into local index of STORE_CLIENTINDEX |
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| 222 | // In this way, store_clientIndex can be used as an input of a source filter |
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| 223 | // Maybe we need a flag to determine whether a client wants to write. TODO |
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| 224 | map<int, CArray<size_t, 1> > outLocalIndexStoreOnClient; |
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| 225 | |
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[1243] | 226 | /** Indexes calculated based on server distribution (serverDistribution_). They are used for writing data into a file. */ |
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| 227 | CArray<size_t,1> localIndexToWriteOnServer; |
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[1129] | 228 | |
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[1243] | 229 | /** Indexes calculated based on client distribution (clientDistribution_). They are not used at all. |
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| 230 | They should be the same as localIndexToWriteOnServer and potentially can be used as an additional check.*/ |
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| 231 | CArray<size_t,1> localIndexToWriteOnClient; |
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| 232 | |
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[1025] | 233 | CArray<size_t,1> indexFromClients; |
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[650] | 234 | void checkMask(void); |
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[821] | 235 | void createMask(void); |
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[1129] | 236 | void modifyMask(const CArray<int,1>& indexToModify, bool valueToModify = false); |
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| 237 | void modifyMaskSize(const std::vector<int>& newDimensionSize, bool newValue = false); |
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[509] | 238 | |
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[742] | 239 | void computeGridGlobalDimension(const std::vector<CDomain*>& domains, |
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| 240 | const std::vector<CAxis*>& axis, |
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[887] | 241 | const std::vector<CScalar*>& scalars, |
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| 242 | const CArray<int,1>& axisDomainOrder); |
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[742] | 243 | |
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[540] | 244 | private: |
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[567] | 245 | template<int N> |
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| 246 | void checkGridMask(CArray<bool,N>& gridMask, |
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[664] | 247 | const std::vector<CArray<bool,1>* >& domainMasks, |
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[567] | 248 | const std::vector<CArray<bool,1>* >& axisMasks, |
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[887] | 249 | const CArray<int,1>& axisDomainOrder, |
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[821] | 250 | bool createMask = false); |
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[623] | 251 | template<int N> |
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[1129] | 252 | void modifyGridMask(CArray<bool,N>& gridMask, const CArray<int,1>& indexToModify, bool valueToModify); |
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[623] | 253 | |
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[1129] | 254 | template<int N> |
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| 255 | void modifyGridMaskSize(CArray<bool,N>& gridMask, const std::vector<int>& eachDimSize, bool newValue); |
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| 256 | |
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[1144] | 257 | void storeField_arr(const double* const data, CArray<double, 1>& stored) const; |
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| 258 | void restoreField_arr(const CArray<double, 1>& stored, double* const data) const; |
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[1250] | 259 | void uncompressField_arr(const double* const data, CArray<double, 1>& outData) const; |
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[1144] | 260 | |
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[540] | 261 | void setVirtualDomainGroup(CDomainGroup* newVDomainGroup); |
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| 262 | void setVirtualAxisGroup(CAxisGroup* newVAxisGroup); |
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[887] | 263 | void setVirtualScalarGroup(CScalarGroup* newVScalarGroup); |
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[567] | 264 | |
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[887] | 265 | void setDomainList(const std::vector<CDomain*> domains = std::vector<CDomain*>()); |
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[540] | 266 | void setAxisList(const std::vector<CAxis*> axis = std::vector<CAxis*>()); |
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[887] | 267 | void setScalarList(const std::vector<CScalar*> scalars = std::vector<CScalar*>()); |
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[540] | 268 | |
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[887] | 269 | CDomainGroup* getVirtualDomainGroup() const; |
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[540] | 270 | CAxisGroup* getVirtualAxisGroup() const; |
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[887] | 271 | CScalarGroup* getVirtualScalarGroup() const; |
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[619] | 272 | |
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[657] | 273 | void checkAttributesAfterTransformation(); |
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[619] | 274 | void setTransformationAlgorithms(); |
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[865] | 275 | void computeIndexByElement(const std::vector<boost::unordered_map<size_t,std::vector<int> > >& indexServerOnElement, |
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[1263] | 276 | const CContextClient* client, |
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[865] | 277 | CClientServerMapping::GlobalIndexMap& globalIndexOnServer); |
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[1158] | 278 | int computeGridGlobalDimension(std::vector<int>& globalDim, |
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| 279 | const std::vector<CDomain*> domains, |
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| 280 | const std::vector<CAxis*> axis, |
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| 281 | const std::vector<CScalar*> scalars, |
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| 282 | const CArray<int,1>& axisDomainOrder); |
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| 283 | int getDistributedDimension(); |
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[619] | 284 | |
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[1025] | 285 | void computeClientIndex(); |
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| 286 | void computeConnectedClients(); |
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[1202] | 287 | void computeClientIndexScalarGrid(); |
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| 288 | void computeConnectedClientsScalarGrid(); |
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[1025] | 289 | |
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[540] | 290 | private: |
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[1236] | 291 | bool isChecked; |
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| 292 | bool isDomainAxisChecked; |
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| 293 | bool isIndexSent; |
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| 294 | |
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[540] | 295 | CDomainGroup* vDomainGroup_; |
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| 296 | CAxisGroup* vAxisGroup_; |
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[887] | 297 | CScalarGroup* vScalarGroup_; |
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| 298 | std::vector<std::string> axisList_, domList_, scalarList_; |
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| 299 | bool isAxisListSet, isDomListSet, isScalarListSet; |
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[567] | 300 | |
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[1243] | 301 | /** Distribution calculated in computeClientIndex() based on the knowledge of the entire grid */ |
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[551] | 302 | CDistributionClient* clientDistribution_; |
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[1243] | 303 | |
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| 304 | /** Distribution calculated upon receiving indexes */ |
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[552] | 305 | CDistributionServer* serverDistribution_; |
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[1243] | 306 | |
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[568] | 307 | CClientServerMapping* clientServerMap_; |
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[567] | 308 | size_t writtenDataSize_; |
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[676] | 309 | int numberWrittenIndexes_, totalNumberWrittenIndexes_, offsetWrittenIndexes_; |
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[1243] | 310 | |
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[1263] | 311 | /** Map storing local ranks of connected receivers. Key = size of receiver's intracomm */ |
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| 312 | std::map<int, std::vector<int> > connectedServerRank_; |
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[1243] | 313 | |
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[1263] | 314 | /** Map storing the size of data to be send. Key = size of receiver's intracomm */ |
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| 315 | std::map<int, std::map<int,size_t> > connectedDataSize_; |
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[1243] | 316 | |
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[1165] | 317 | bool isDataDistributed_; |
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[676] | 318 | //! True if and only if the data defined on the grid can be outputted in a compressed way |
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| 319 | bool isCompressible_; |
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| 320 | std::set<std::string> relFilesCompressed; |
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[619] | 321 | |
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[1129] | 322 | bool isTransformed_, isGenerated_; |
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| 323 | bool computedWrittenIndex_; |
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[620] | 324 | std::vector<int> axisPositionInGrid_; |
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| 325 | CGridTransformation* transformations_; |
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[1158] | 326 | bool hasDomainAxisBaseRef_; |
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[823] | 327 | std::map<CGrid*, std::pair<bool,StdString> > gridSrc_; |
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[824] | 328 | bool hasTransform_; |
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[1243] | 329 | |
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[1263] | 330 | /** Map storing global indexes of server-like (band-wise) distribution for sending to receivers. |
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| 331 | * Key = size of receiver's intracomm. |
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| 332 | */ |
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| 333 | // std::map<CContextClient*, CClientServerMapping::GlobalIndexMap> globalIndexOnServer_; |
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| 334 | std::map<int, CClientServerMapping::GlobalIndexMap> globalIndexOnServer_; |
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[1243] | 335 | |
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[1263] | 336 | |
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[1243] | 337 | /** List order of axis and domain in a grid, if there is a domain, it will take value 1 (true), axis 0 (false) */ |
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[887] | 338 | std::vector<int> order_; |
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[1243] | 339 | |
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[219] | 340 | }; // class CGrid |
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| 341 | |
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| 342 | ///-------------------------------------------------------------- |
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| 343 | |
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[369] | 344 | template <int n> |
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[567] | 345 | void CGrid::inputField(const CArray<double,n>& field, CArray<double,1>& stored) const |
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[219] | 346 | { |
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[369] | 347 | if (this->getDataSize() != field.numElements()) |
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| 348 | ERROR("void CGrid::inputField(const CArray<double,n>& field, CArray<double,1>& stored) const", |
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[680] | 349 | << "[ Awaiting data of size = " << this->getDataSize() << ", " |
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[421] | 350 | << "Received data size = " << field.numElements() << " ] " |
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[955] | 351 | << "The data array does not have the right size! " |
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| 352 | << "Grid = " << this->GetName()) |
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[650] | 353 | this->storeField_arr(field.dataFirst(), stored); |
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[219] | 354 | } |
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| 355 | |
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[593] | 356 | template <int n> |
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| 357 | void CGrid::outputField(const CArray<double,1>& stored, CArray<double,n>& field) const |
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| 358 | { |
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| 359 | if (this->getDataSize() != field.numElements()) |
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| 360 | ERROR("void CGrid::outputField(const CArray<double,1>& stored, CArray<double,n>& field) const", |
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| 361 | << "[ Size of the data = " << this->getDataSize() << ", " |
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| 362 | << "Output data size = " << field.numElements() << " ] " |
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[955] | 363 | << "The ouput array does not have the right size! " |
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| 364 | << "Grid = " << this->GetName()) |
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[593] | 365 | this->restoreField_arr(stored, field.dataFirst()); |
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| 366 | } |
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| 367 | |
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[1250] | 368 | /*! |
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| 369 | This function removes the effect of mask on received data on the server. |
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| 370 | This function only serve for the checking purpose. TODO: Something must be done to seperate mask and data_index from each other in received data |
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| 371 | \data data received data with masking effect on the server |
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| 372 | \outData data without masking effect |
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| 373 | */ |
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| 374 | template <int N> |
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| 375 | void CGrid::uncompressField(const CArray<double,N>& data, CArray<double,1>& outData) const |
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| 376 | { |
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| 377 | uncompressField_arr(data.dataFirst(), outData); |
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| 378 | } |
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| 379 | |
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[567] | 380 | template<int N> |
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| 381 | void CGrid::checkGridMask(CArray<bool,N>& gridMask, |
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[664] | 382 | const std::vector<CArray<bool,1>* >& domainMasks, |
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[567] | 383 | const std::vector<CArray<bool,1>* >& axisMasks, |
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[887] | 384 | const CArray<int,1>& axisDomainOrder, |
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[821] | 385 | bool createMask) |
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[567] | 386 | { |
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| 387 | int idx = 0; |
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| 388 | int numElement = axisDomainOrder.numElements(); |
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[650] | 389 | int dim = domainMasks.size() * 2 + axisMasks.size(); |
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[664] | 390 | std::vector<CDomain*> domainP = this->getDomains(); |
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[567] | 391 | |
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| 392 | std::vector<int> idxLoop(dim,0), indexMap(numElement), eachDimSize(dim); |
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| 393 | std::vector<int> currentIndex(dim); |
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| 394 | int idxDomain = 0, idxAxis = 0; |
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| 395 | for (int i = 0; i < numElement; ++i) |
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| 396 | { |
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| 397 | indexMap[i] = idx; |
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[887] | 398 | if (2 == axisDomainOrder(i)) { |
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[664] | 399 | eachDimSize[indexMap[i]] = domainP[idxDomain]->ni; |
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| 400 | eachDimSize[indexMap[i]+1] = domainP[idxDomain]->nj; |
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[567] | 401 | idx += 2; ++idxDomain; |
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| 402 | } |
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[887] | 403 | else if (1 == axisDomainOrder(i)) { |
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[567] | 404 | eachDimSize[indexMap[i]] = axisMasks[idxAxis]->numElements(); |
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| 405 | ++idx; ++idxAxis; |
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| 406 | } |
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[976] | 407 | else {}; |
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[567] | 408 | } |
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| 409 | |
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[821] | 410 | if (!gridMask.isEmpty() && !createMask) |
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[567] | 411 | { |
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| 412 | for (int i = 0; i < dim; ++i) |
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| 413 | { |
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| 414 | if (gridMask.extent(i) != eachDimSize[i]) |
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[680] | 415 | ERROR("CGrid::checkMask(void)", |
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| 416 | << "The mask has one dimension whose size is different from the one of the local grid." << std::endl |
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| 417 | << "Local size of dimension " << i << " is " << eachDimSize[i] << "." << std::endl |
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[955] | 418 | << "Mask size for dimension " << i << " is " << gridMask.extent(i) << "." << std::endl |
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| 419 | << "Grid = " << this->GetName()) |
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[567] | 420 | } |
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| 421 | } |
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| 422 | else { |
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| 423 | CArrayBoolTraits<CArray<bool,N> >::resizeArray(gridMask,eachDimSize); |
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| 424 | gridMask = true; |
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| 425 | } |
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| 426 | |
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| 427 | int ssize = gridMask.numElements(); |
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| 428 | idx = 0; |
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| 429 | while (idx < ssize) |
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| 430 | { |
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| 431 | for (int i = 0; i < dim-1; ++i) |
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| 432 | { |
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| 433 | if (idxLoop[i] == eachDimSize[i]) |
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| 434 | { |
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| 435 | idxLoop[i] = 0; |
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| 436 | ++idxLoop[i+1]; |
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| 437 | } |
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| 438 | } |
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| 439 | |
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| 440 | // Find out outer index |
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| 441 | idxDomain = idxAxis = 0; |
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| 442 | bool maskValue = true; |
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| 443 | for (int i = 0; i < numElement; ++i) |
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| 444 | { |
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[887] | 445 | if (2 == axisDomainOrder(i)) |
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[567] | 446 | { |
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[664] | 447 | maskValue = maskValue && (*domainMasks[idxDomain])(idxLoop[indexMap[i]] + idxLoop[indexMap[i]+1] * eachDimSize[indexMap[i]]); |
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[567] | 448 | ++idxDomain; |
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| 449 | } |
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[887] | 450 | else if (1 == axisDomainOrder(i)) |
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[567] | 451 | { |
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| 452 | maskValue = maskValue && (*axisMasks[idxAxis])(idxLoop[indexMap[i]]); |
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| 453 | ++idxAxis; |
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| 454 | } |
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| 455 | } |
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| 456 | |
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| 457 | int maskIndex = idxLoop[0]; |
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| 458 | int mulDim = 1; |
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| 459 | for (int k = 1; k < dim; ++k) |
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| 460 | { |
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| 461 | mulDim *= eachDimSize[k-1]; |
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| 462 | maskIndex += idxLoop[k]*mulDim; |
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| 463 | } |
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[623] | 464 | *(gridMask.dataFirst()+maskIndex) &= maskValue; |
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[567] | 465 | |
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| 466 | ++idxLoop[0]; |
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| 467 | ++idx; |
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| 468 | } |
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| 469 | |
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| 470 | } |
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| 471 | |
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[1129] | 472 | template<int N> |
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| 473 | void CGrid::modifyGridMaskSize(CArray<bool,N>& gridMask, |
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| 474 | const std::vector<int>& eachDimSize, |
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| 475 | bool newValue) |
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| 476 | { |
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| 477 | if (N != eachDimSize.size()) |
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| 478 | { |
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| 479 | // ERROR("CGrid::modifyGridMaskSize(CArray<bool,N>& gridMask, |
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| 480 | // const std::vector<int>& eachDimSize, |
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| 481 | // bool newValue)", |
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| 482 | // << "Dimension size of the mask is different from input dimension size." << std::endl |
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| 483 | // << "Mask dimension is " << N << "." << std::endl |
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| 484 | // << "Input dimension is " << eachDimSize.size() << "." << std::endl |
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| 485 | // << "Grid = " << this->GetName()) |
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| 486 | } |
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| 487 | CArrayBoolTraits<CArray<bool,N> >::resizeArray(gridMask,eachDimSize); |
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| 488 | gridMask = newValue; |
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| 489 | } |
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| 490 | |
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| 491 | |
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[623] | 492 | /*! |
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| 493 | Modify the current mask of grid, the local index to be modified will take value false |
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| 494 | \param [in/out] gridMask current mask of grid |
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| 495 | \param [in] indexToModify local index to modify |
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| 496 | */ |
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| 497 | template<int N> |
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[1129] | 498 | void CGrid::modifyGridMask(CArray<bool,N>& gridMask, const CArray<int,1>& indexToModify, bool valueToModify) |
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| 499 | { |
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[623] | 500 | int num = indexToModify.numElements(); |
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| 501 | for (int idx = 0; idx < num; ++idx) |
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| 502 | { |
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| 503 | *(gridMask.dataFirst()+indexToModify(idx)) = valueToModify; |
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| 504 | } |
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| 505 | } |
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[219] | 506 | ///-------------------------------------------------------------- |
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| 507 | |
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| 508 | // Declare/Define CGridGroup and CGridDefinition |
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| 509 | DECLARE_GROUP(CGrid); |
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| 510 | |
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| 511 | ///-------------------------------------------------------------- |
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| 512 | |
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[335] | 513 | } // namespace xios |
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[219] | 514 | |
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[591] | 515 | #endif // __XIOS_CGrid__ |
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