[219] | 1 | #include "nc4_data_input.hpp" |
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| 2 | |
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[599] | 3 | #include "context.hpp" |
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| 4 | #include "context_server.hpp" |
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[775] | 5 | #include "context_client.hpp" |
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| 6 | #include "domain.hpp" |
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| 7 | #include "axis.hpp" |
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[967] | 8 | #include "scalar.hpp" |
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[599] | 9 | |
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[335] | 10 | namespace xios |
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[219] | 11 | { |
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[1328] | 12 | CNc4DataInput::CNc4DataInput(const StdString& filename, ep_lib::MPI_Comm comm_file, bool multifile, bool isCollective /*= true*/, const StdString& timeCounterName /*= "time_counter"*/) |
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[599] | 13 | : SuperClass() |
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[802] | 14 | , SuperClassWriter(filename, &comm_file, multifile, timeCounterName) |
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[599] | 15 | , comm_file(comm_file) |
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| 16 | , filename(filename) |
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| 17 | , isCollective(isCollective) |
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[775] | 18 | , readMetaDataDomains_(), readValueDomains_() |
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| 19 | , readMetaDataAxis_(), readValueAxis_() |
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[967] | 20 | , readMetaDataScalar_(), readValueScalar_() |
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[599] | 21 | { |
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| 22 | SuperClass::type = multifile ? MULTI_FILE : ONE_FILE; |
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| 23 | } |
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[219] | 24 | |
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[599] | 25 | CNc4DataInput::~CNc4DataInput(void) |
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| 26 | { /* Nothing more to do */ } |
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[219] | 27 | |
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[599] | 28 | StdSize CNc4DataInput::getFieldNbRecords_(CField* field) |
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| 29 | { |
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[770] | 30 | StdString fieldId = field->getFieldOutputName(); |
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[599] | 31 | |
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| 32 | if (SuperClassWriter::isTemporal(fieldId)) |
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| 33 | { |
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[811] | 34 | // return SuperClassWriter::getDimensions(&fieldId)[SuperClassWriter::getUnlimitedDimensionName()]; |
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| 35 | return SuperClassWriter::getDimensions(&fieldId)[SuperClassWriter::getTimeCounterName()]; |
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[599] | 36 | } |
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| 37 | |
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| 38 | return 1; |
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| 39 | } |
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| 40 | |
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| 41 | void CNc4DataInput::readFieldData_(CField* field) |
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| 42 | { |
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| 43 | CContext* context = CContext::getCurrent(); |
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| 44 | CContextServer* server = context->server; |
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| 45 | |
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| 46 | CGrid* grid = field->grid; |
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| 47 | |
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| 48 | if (!grid->doGridHaveDataToWrite()) |
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| 49 | if (SuperClass::type==MULTI_FILE || !isCollective) return; |
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| 50 | |
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[770] | 51 | StdString fieldId = field->getFieldOutputName(); |
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[599] | 52 | |
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| 53 | CArray<double,1> fieldData(grid->getWrittenDataSize()); |
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| 54 | if (!field->default_value.isEmpty()) fieldData = field->default_value; |
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[1338] | 55 | #ifdef _usingEP |
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| 56 | SuperClass::type = ONE_FILE; |
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| 57 | printf("SuperClass::type = %d\n", SuperClass::type); |
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| 58 | #endif |
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| 59 | |
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[599] | 60 | switch (SuperClass::type) |
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| 61 | { |
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| 62 | case MULTI_FILE: |
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[850] | 63 | SuperClassWriter::getData(fieldData, fieldId, isCollective, (field->getNStep() - 1)%field->nstepMax ); |
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[599] | 64 | break; |
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| 65 | case ONE_FILE: |
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| 66 | { |
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[765] | 67 | /* |
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[599] | 68 | std::vector<int> nZoomBeginGlobal = grid->getDistributionServer()->getZoomBeginGlobal(); |
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| 69 | std::vector<int> nZoomBeginServer = grid->getDistributionServer()->getZoomBeginServer(); |
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| 70 | std::vector<int> nZoomSizeServer = grid->getDistributionServer()->getZoomSizeServer(); |
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| 71 | |
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| 72 | int ssize = nZoomBeginGlobal.size(); |
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| 73 | |
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| 74 | std::vector<StdSize> start(ssize); |
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| 75 | std::vector<StdSize> count(ssize); |
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| 76 | |
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| 77 | for (int i = 0; i < ssize; ++i) |
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| 78 | { |
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| 79 | start[i] = nZoomBeginServer[ssize - i - 1] - nZoomBeginGlobal[ssize - i - 1]; |
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| 80 | count[i] = nZoomSizeServer[ssize - i - 1]; |
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| 81 | } |
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[765] | 82 | */ |
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[599] | 83 | |
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[765] | 84 | std::vector<int> nZoomBeginGlobal = grid->getDistributionServer()->getZoomBeginGlobal(); |
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| 85 | std::vector<int> nZoomBeginServer = grid->getDistributionServer()->getZoomBeginServer(); |
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| 86 | std::vector<int> nZoomSizeServer = grid->getDistributionServer()->getZoomSizeServer(); |
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| 87 | |
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| 88 | std::vector<StdSize> start, count; |
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| 89 | |
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[887] | 90 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
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[765] | 91 | std::vector<StdString> domainList = grid->getDomainList(); |
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| 92 | std::vector<StdString> axisList = grid->getAxisList(); |
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| 93 | int numElement = axisDomainOrder.numElements(); |
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| 94 | int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
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| 95 | int idx = nZoomBeginGlobal.size() - 1; |
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| 96 | |
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| 97 | start.reserve(nZoomBeginGlobal.size()); |
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| 98 | count.reserve(nZoomBeginGlobal.size()); |
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| 99 | |
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| 100 | for (int i = numElement - 1; i >= 0; --i) |
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| 101 | { |
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[887] | 102 | if (2 == axisDomainOrder(i)) |
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[765] | 103 | { |
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| 104 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
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| 105 | if ((domain->type) != CDomain::type_attr::unstructured) |
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| 106 | { |
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| 107 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
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| 108 | count.push_back(nZoomSizeServer[idx]); |
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| 109 | } |
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| 110 | --idx ; |
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| 111 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
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| 112 | count.push_back(nZoomSizeServer[idx]); |
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| 113 | --idx ; |
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| 114 | --idxDomain; |
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| 115 | } |
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[887] | 116 | else if (1 == axisDomainOrder(i)) |
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[765] | 117 | { |
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| 118 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
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| 119 | count.push_back(nZoomSizeServer[idx]); |
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| 120 | --idx; |
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[967] | 121 | } |
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| 122 | else |
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| 123 | { |
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| 124 | if (1 == axisDomainOrder.numElements()) |
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| 125 | { |
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| 126 | start.push_back(0); |
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| 127 | count.push_back(1); |
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| 128 | } |
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| 129 | --idx; |
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| 130 | } |
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[765] | 131 | } |
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[777] | 132 | |
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[850] | 133 | SuperClassWriter::getData(fieldData, fieldId, isCollective, (field->getNStep() - 1)%field->nstepMax, &start, &count); |
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[599] | 134 | break; |
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| 135 | } |
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| 136 | } |
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| 137 | |
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| 138 | field->inputField(fieldData); |
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| 139 | |
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| 140 | if (!field->scale_factor.isEmpty() || !field->add_offset.isEmpty()) |
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| 141 | { |
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| 142 | double scaleFactor = 1.0, addOffset = 0.0; |
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| 143 | if (!field->scale_factor.isEmpty()) scaleFactor = field->scale_factor; |
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| 144 | if (!field->add_offset.isEmpty()) addOffset = field->add_offset; |
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| 145 | field->invertScaleFactorAddOffset(scaleFactor, addOffset); |
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| 146 | } |
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| 147 | } |
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| 148 | |
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[775] | 149 | void CNc4DataInput::readFieldAttributes_(CField* field, bool readAttributeValues) |
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| 150 | { |
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[777] | 151 | StdString fieldId = field->getFieldOutputName(); |
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[775] | 152 | |
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| 153 | CGrid* grid = field->grid; |
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| 154 | |
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| 155 | std::vector<CDomain*> domainP = grid->getDomains(); |
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| 156 | std::vector<CAxis*> axisP = grid->getAxis(); |
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[967] | 157 | std::vector<CScalar*> scalarP = grid->getScalars(); |
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[775] | 158 | int gridDim = domainP.size() * 2 + axisP.size(); |
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| 159 | |
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[967] | 160 | // Nothing to do with scalar without timestep |
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| 161 | if ((0 == gridDim) && (!SuperClassWriter::isTemporal(fieldId))) |
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| 162 | return; |
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| 163 | |
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[775] | 164 | // Verify the compatibility of dimension of declared grid and real grid in file |
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| 165 | int realGridDim = 1; |
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[783] | 166 | bool isUnstructuredGrid = SuperClassWriter::isUnstructured(fieldId); |
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[775] | 167 | std::map<StdString, StdSize> dimSizeMap = SuperClassWriter::getDimensions(&fieldId); |
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[807] | 168 | std::list<StdString> dimList = SuperClassWriter::getDimensionsList(&fieldId); |
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[825] | 169 | |
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[775] | 170 | realGridDim = SuperClassWriter::isTemporal(fieldId) ? dimSizeMap.size() - 1 : dimSizeMap.size(); |
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[783] | 171 | if (isUnstructuredGrid) ++realGridDim; |
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[775] | 172 | |
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| 173 | if (gridDim != realGridDim) |
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| 174 | ERROR("CNc4DataInput::readFieldAttributes_(CField* field, bool readAttributeValues)", |
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| 175 | << "Field '" << fieldId << "' has incorrect dimension " << std::endl |
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| 176 | << "Verify dimension of grid defined by 'grid_ref' or 'domain_ref'/'axis_ref' and dimension of grid in read file."); |
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| 177 | |
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| 178 | // Remove unlimited dimension from the map, we dont need it anymore |
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[825] | 179 | if (SuperClassWriter::isTemporal(fieldId)) |
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[807] | 180 | { |
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| 181 | dimSizeMap.erase(SuperClassWriter::getUnlimitedDimensionName()); |
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| 182 | dimList.pop_front() ; // assume time dimension is first |
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| 183 | } |
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[825] | 184 | |
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[783] | 185 | std::list<std::pair<StdString, StdSize> > listDimSize; |
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[807] | 186 | /* |
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[783] | 187 | for (std::map<StdString, StdSize>::const_iterator itMap = dimSizeMap.begin(); itMap != dimSizeMap.end(); ++itMap) |
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| 188 | listDimSize.push_front(*itMap); |
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[807] | 189 | */ |
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[775] | 190 | |
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[1482] | 191 | //if (!SuperClassWriter::isRectilinear(fieldId)) |
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| 192 | if (true) |
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[1460] | 193 | { |
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| 194 | for (std::list<StdString>::const_iterator it = dimList.begin(); it != dimList.end(); ++it) |
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| 195 | listDimSize.push_front(*dimSizeMap.find(*it)); |
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| 196 | } |
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| 197 | else |
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| 198 | { |
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| 199 | std::list<StdString> coords = SuperClassWriter::getCoordinatesIdList(fieldId); |
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| 200 | std::list<StdString>::const_iterator itCoord = coords.begin(); |
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| 201 | for (; itCoord != coords.end(); itCoord++) |
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| 202 | { |
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| 203 | const StdString& coord = *itCoord; |
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| 204 | if (SuperClassWriter::hasVariable(coord) && !SuperClassWriter::isTemporal(coord)) |
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| 205 | { |
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| 206 | std::map<StdString, StdSize> dimsTmp = SuperClassWriter::getDimensions(&coord); |
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| 207 | StdString dimNameTmp = dimsTmp.begin()->first; |
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| 208 | StdSize dimSizeTmp = dimsTmp.begin()->second; |
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| 209 | listDimSize.push_front(make_pair(coord, dimSizeTmp)); |
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| 210 | dimSizeMap.erase(dimNameTmp); |
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| 211 | dimList.remove(dimNameTmp); |
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| 212 | } |
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| 213 | } |
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| 214 | for (std::list<StdString>::const_iterator it = dimList.begin(); it != dimList.end(); ++it) |
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| 215 | listDimSize.push_front(*dimSizeMap.find(*it)); |
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| 216 | } |
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| 217 | |
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[775] | 218 | // Now process domain and axis |
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[887] | 219 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
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[967] | 220 | int numElement = domainP.size() + axisP.size() + scalarP.size(); |
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[775] | 221 | int elementPosition = 0; |
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[967] | 222 | int idxDomain = 0, idxAxis = 0, idxScalar = 0; |
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[775] | 223 | |
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| 224 | std::pair<std::set<StdString>::iterator,bool> it; |
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| 225 | for (int i = 0; i < numElement; ++i) |
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| 226 | { |
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[887] | 227 | if(2 == axisDomainOrder(i)) |
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[775] | 228 | { |
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| 229 | if (readAttributeValues) |
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| 230 | { |
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| 231 | it = readValueDomains_.insert(domainP[idxDomain]->getId()); |
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[783] | 232 | if (it.second) readDomainAttributeValueFromFile(domainP[idxDomain], listDimSize, elementPosition, fieldId); |
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[775] | 233 | } |
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| 234 | else |
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| 235 | { |
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| 236 | it = readMetaDataDomains_.insert(domainP[idxDomain]->getId()); |
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[783] | 237 | if (it.second) readDomainAttributesFromFile(domainP[idxDomain], listDimSize, elementPosition, fieldId); |
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[775] | 238 | } |
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| 239 | ++idxDomain; |
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[783] | 240 | if (isUnstructuredGrid) ++elementPosition; |
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| 241 | else elementPosition += 2; |
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[775] | 242 | } |
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[887] | 243 | else if (1 == axisDomainOrder(i)) |
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[775] | 244 | { |
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| 245 | if (readAttributeValues) |
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| 246 | { |
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| 247 | it = readValueAxis_.insert(axisP[idxAxis]->getId()); |
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[783] | 248 | if (it.second) readAxisAttributeValueFromFile(axisP[idxAxis], listDimSize, elementPosition, fieldId); |
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[775] | 249 | } |
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| 250 | else |
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| 251 | { |
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| 252 | it = readMetaDataAxis_.insert(axisP[idxAxis]->getId()); |
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[783] | 253 | if (it.second) readAxisAttributesFromFile(axisP[idxAxis], listDimSize, elementPosition, fieldId); |
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[775] | 254 | } |
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| 255 | ++idxAxis; |
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| 256 | ++elementPosition; |
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| 257 | } |
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[967] | 258 | else |
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| 259 | { |
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| 260 | if (readAttributeValues) |
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| 261 | { |
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| 262 | it = readValueScalar_.insert(scalarP[idxScalar]->getId()); |
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| 263 | if (it.second) readScalarAttributeValueFromFile(scalarP[idxScalar], listDimSize, elementPosition, fieldId); |
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| 264 | } |
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| 265 | else |
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| 266 | { |
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| 267 | it = readMetaDataScalar_.insert(scalarP[idxScalar]->getId()); |
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| 268 | if (it.second) readScalarAttributesFromFile(scalarP[idxScalar], listDimSize, elementPosition, fieldId); |
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| 269 | } |
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| 270 | ++idxScalar; |
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| 271 | ++elementPosition; |
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| 272 | } |
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[775] | 273 | } |
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| 274 | } |
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| 275 | |
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| 276 | /*! |
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| 277 | Read attributes of a domain from a file |
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| 278 | \param [in] domain domain whose attributes are read from the file |
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| 279 | \param [in] dimSizeMap Dimensions and and their corresponding names and size read from file |
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| 280 | \param [in] emelentPosition position of domain in grid |
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[782] | 281 | \param [in] fieldId id (or name) associated with the grid |
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[775] | 282 | */ |
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[783] | 283 | void CNc4DataInput::readDomainAttributeValueFromFile(CDomain* domain, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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[775] | 284 | int elementPosition, const StdString& fieldId) |
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| 285 | { |
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| 286 | // There are some optional attributes of a domain to retrieve from file // + lon lat? |
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[783] | 287 | std::list<std::pair<StdString, StdSize> >::const_iterator itMapNi = dimSizeMap.begin(), itMapNj, |
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| 288 | iteMap = dimSizeMap.end(); |
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[775] | 289 | |
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[783] | 290 | for (int i = 0; i < elementPosition; ++i, ++itMapNi) {} |
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| 291 | itMapNj = itMapNi; ++itMapNj; |
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[775] | 292 | |
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[1064] | 293 | if ((CDomain::type_attr::rectilinear == domain->type)) |
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[775] | 294 | { |
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[1460] | 295 | // Ok, try to read some attributes such as longitude and latitude |
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[825] | 296 | bool hasLat = SuperClassWriter::hasVariable(itMapNj->first); |
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| 297 | if (hasLat) |
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| 298 | { |
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| 299 | domain->latvalue_rectilinear_read_from_file.resize(itMapNj->second); |
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| 300 | std::vector<StdSize> nBeginLat(1, 0), nSizeLat(1, itMapNj->second); |
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| 301 | readFieldVariableValue(domain->latvalue_rectilinear_read_from_file, itMapNj->first, nBeginLat, nSizeLat, true); |
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| 302 | } |
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[775] | 303 | |
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[825] | 304 | bool hasLon = SuperClassWriter::hasVariable(itMapNi->first); |
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| 305 | if (hasLon) |
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| 306 | { |
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| 307 | domain->lonvalue_rectilinear_read_from_file.resize(itMapNi->second); |
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| 308 | std::vector<StdSize> nBeginLon(1, 0), nSizeLon(1, itMapNi->second); |
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| 309 | readFieldVariableValue(domain->lonvalue_rectilinear_read_from_file, itMapNi->first, nBeginLon, nSizeLon, true); |
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[1064] | 310 | } |
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[775] | 311 | } |
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[1064] | 312 | else if ((CDomain::type_attr::curvilinear == domain->type)) |
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[783] | 313 | { |
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[1460] | 314 | // Make sure that if there is no local domain defined on a process, the process still reads just one value. |
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| 315 | int ni, nj, ibegin, jbegin; |
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| 316 | if (domain->ni == 0) |
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| 317 | { |
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| 318 | ni = 1; |
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| 319 | ibegin = 0; |
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| 320 | } |
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| 321 | else |
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| 322 | { |
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| 323 | ni = domain->ni; |
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| 324 | ibegin = domain->ibegin; |
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| 325 | } |
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| 326 | if (domain->nj == 0) |
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| 327 | { |
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| 328 | nj = 1; |
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| 329 | jbegin = 0; |
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| 330 | } |
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| 331 | else |
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| 332 | { |
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| 333 | nj = domain->nj; |
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| 334 | jbegin = domain->jbegin; |
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| 335 | } |
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| 336 | |
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[785] | 337 | std::vector<StdSize> nBeginLatLon(2), nSizeLatLon(2); |
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[1460] | 338 | nBeginLatLon[0] = jbegin; nBeginLatLon[1] = ibegin; |
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| 339 | nSizeLatLon[0] = nj; nSizeLatLon[1] = ni; |
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[783] | 340 | |
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| 341 | StdString latName = this->getLatCoordName(fieldId); |
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[1064] | 342 | if (SuperClassWriter::hasVariable(latName)) |
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[825] | 343 | { |
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[1460] | 344 | domain->latvalue_curvilinear_read_from_file.resize(ni, nj); |
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[1064] | 345 | readFieldVariableValue(domain->latvalue_curvilinear_read_from_file, latName, nBeginLatLon, nSizeLatLon); |
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[825] | 346 | } |
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[783] | 347 | StdString lonName = this->getLonCoordName(fieldId); |
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[1064] | 348 | if (SuperClassWriter::hasVariable(lonName)) |
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[825] | 349 | { |
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[1460] | 350 | domain->lonvalue_curvilinear_read_from_file.resize(ni, nj); |
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[1064] | 351 | readFieldVariableValue(domain->lonvalue_curvilinear_read_from_file, lonName, nBeginLatLon, nSizeLatLon); |
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[825] | 352 | } |
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[783] | 353 | |
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| 354 | StdString boundsLatName = this->getBoundsId(latName); |
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| 355 | StdString boundsLonName = this->getBoundsId(lonName); |
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| 356 | |
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[1460] | 357 | int nbVertex = 4; //this->getNbVertex(fieldId); |
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[1064] | 358 | if (!domain->nvertex.isEmpty() && (domain->nvertex != nbVertex)) |
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| 359 | { |
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| 360 | ERROR("void CNc4DataInput::readDomainAttributeValueFromFile(...)", |
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| 361 | << "The domain " << domain->getDomainOutputName() |
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| 362 | << " has nvertex read from file " << this->filename << " and nvertex provided from model" |
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| 363 | << " are not coherent. They should be the same." << std::endl |
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| 364 | << " nvertex read from file: "<< nbVertex |
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| 365 | << " nvertex from model: "<< domain->nvertex << std::endl); |
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| 366 | } |
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| 367 | |
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| 368 | if (SuperClassWriter::hasVariable(boundsLatName) || SuperClassWriter::hasVariable(boundsLonName)) |
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[825] | 369 | domain->nvertex.setValue(nbVertex); |
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[1064] | 370 | |
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[785] | 371 | std::vector<StdSize> nBeginBndsLatLon(3), nSizeBndsLatLon(3); |
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[1460] | 372 | nBeginBndsLatLon[0] = jbegin; nSizeBndsLatLon[0] = nj; |
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| 373 | nBeginBndsLatLon[1] = ibegin; nSizeBndsLatLon[1] = ni; |
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[785] | 374 | nBeginBndsLatLon[2] = 0; nSizeBndsLatLon[2] = nbVertex; |
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[783] | 375 | |
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[1064] | 376 | if (SuperClassWriter::hasVariable(boundsLatName)) |
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[825] | 377 | { |
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[1460] | 378 | domain->bounds_latvalue_curvilinear_read_from_file.resize(nbVertex, ni, nj); |
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[1064] | 379 | readFieldVariableValue(domain->bounds_latvalue_curvilinear_read_from_file, boundsLatName, nBeginBndsLatLon, nSizeBndsLatLon); |
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[825] | 380 | |
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| 381 | } |
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[1064] | 382 | if (SuperClassWriter::hasVariable(boundsLonName)) |
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[825] | 383 | { |
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[1460] | 384 | domain->bounds_lonvalue_curvilinear_read_from_file.resize(nbVertex, ni, nj); |
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[1064] | 385 | readFieldVariableValue(domain->bounds_lonvalue_curvilinear_read_from_file, boundsLonName, nBeginBndsLatLon, nSizeBndsLatLon); |
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| 386 | } |
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[783] | 387 | } |
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[825] | 388 | else if ((CDomain::type_attr::unstructured == domain->type))// || (this->isUnstructured(fieldId))) |
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[775] | 389 | { |
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[1460] | 390 | // Make sure that if there is no local domain defined on a process, the process still reads just one value. |
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| 391 | int ni, ibegin; |
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| 392 | if (domain->ni == 0) |
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| 393 | { |
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| 394 | ni = 1; |
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| 395 | ibegin = 0; |
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| 396 | } |
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| 397 | else |
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| 398 | { |
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| 399 | ni = domain->ni; |
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| 400 | ibegin = domain->ibegin; |
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| 401 | } |
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| 402 | |
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[785] | 403 | std::vector<StdSize> nBeginLatLon(1,0), nSizeLatLon(1,0); |
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[1460] | 404 | nBeginLatLon[0] = ibegin; |
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| 405 | nSizeLatLon[0] = ni; |
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[785] | 406 | |
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[782] | 407 | StdString latName = this->getLatCoordName(fieldId); |
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[1064] | 408 | if (SuperClassWriter::hasVariable(latName)) |
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[825] | 409 | { |
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[1460] | 410 | domain->latvalue_unstructured_read_from_file.resize(ni); |
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[1064] | 411 | readFieldVariableValue(domain->latvalue_unstructured_read_from_file, latName, nBeginLatLon, nSizeLatLon); |
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[825] | 412 | } |
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[785] | 413 | |
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[782] | 414 | StdString lonName = this->getLonCoordName(fieldId); |
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[825] | 415 | if (SuperClassWriter::hasVariable(lonName)) //(0 != lonName.compare("")) |
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| 416 | { |
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[1460] | 417 | domain->lonvalue_unstructured_read_from_file.resize(ni); |
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[1064] | 418 | readFieldVariableValue(domain->lonvalue_unstructured_read_from_file, lonName, nBeginLatLon, nSizeLatLon); |
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[825] | 419 | } |
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[782] | 420 | |
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| 421 | StdString boundsLatName = this->getBoundsId(latName); |
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| 422 | StdString boundsLonName = this->getBoundsId(lonName); |
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| 423 | |
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[783] | 424 | int nbVertex = this->getNbVertex(fieldId); |
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[1064] | 425 | if (!domain->nvertex.isEmpty() && (domain->nvertex != nbVertex)) |
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| 426 | { |
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| 427 | ERROR("void CNc4DataInput::readDomainAttributeValueFromFile(...)", |
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| 428 | << "The domain " << domain->getDomainOutputName() |
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| 429 | << " has nvertex read from file " << this->filename << " and nvertex provided from model" |
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| 430 | << " are not coherent. They should be the same." << std::endl |
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| 431 | << " nvertex read from file: "<< nbVertex |
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| 432 | << " nvertex from model: "<< domain->nvertex << std::endl); |
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| 433 | } |
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| 434 | |
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| 435 | if (SuperClassWriter::hasVariable(boundsLatName) || SuperClassWriter::hasVariable(boundsLonName)) |
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[825] | 436 | domain->nvertex.setValue(nbVertex); |
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| 437 | |
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[785] | 438 | std::vector<StdSize> nBeginBndsLatLon(2), nSizeBndsLatLon(2); |
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[1460] | 439 | nBeginBndsLatLon[0] = ibegin; nSizeBndsLatLon[0] = ni; |
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[785] | 440 | nBeginBndsLatLon[1] = 0; nSizeBndsLatLon[1] = nbVertex; |
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[782] | 441 | |
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[1064] | 442 | if (SuperClassWriter::hasVariable(boundsLatName)) |
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[825] | 443 | { |
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[1064] | 444 | domain->bounds_latvalue_unstructured_read_from_file.resize(nSizeBndsLatLon[1], nSizeBndsLatLon[0]); |
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| 445 | readFieldVariableValue(domain->bounds_latvalue_unstructured_read_from_file, boundsLatName, nBeginBndsLatLon, nSizeBndsLatLon); |
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[825] | 446 | } |
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[785] | 447 | |
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[1064] | 448 | if (SuperClassWriter::hasVariable(boundsLonName)) |
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[825] | 449 | { |
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[1064] | 450 | domain->bounds_lonvalue_unstructured_read_from_file.resize(nSizeBndsLatLon[1], nSizeBndsLatLon[0]); |
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| 451 | readFieldVariableValue(domain->bounds_lonvalue_unstructured_read_from_file, boundsLonName, nBeginBndsLatLon, nSizeBndsLatLon); |
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| 452 | } |
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[775] | 453 | } |
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[1064] | 454 | domain->fillInLonLat(); |
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[775] | 455 | } |
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| 456 | |
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| 457 | /*! |
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[782] | 458 | Read attribute value of a domain from a file |
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[775] | 459 | \param [in] domain domain whose attributes are read from the file |
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| 460 | \param [in] dimSizeMap Dimensions and and their corresponding names and size read from file |
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| 461 | \param [in] emelentPosition position of domain in grid |
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[782] | 462 | \param [in] fieldId id (or name) associated with the grid |
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[775] | 463 | */ |
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[783] | 464 | void CNc4DataInput::readDomainAttributesFromFile(CDomain* domain, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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[775] | 465 | int elementPosition, const StdString& fieldId) |
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| 466 | { |
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| 467 | // There are some mandatory attributes of a domain to retrieve from file |
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| 468 | // + ni_glo, nj_glo |
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[783] | 469 | std::list<std::pair<StdString, StdSize> >::const_iterator itMapNi = dimSizeMap.begin(), itMapNj, |
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| 470 | iteMap = dimSizeMap.end(); |
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| 471 | for (int i = 0; i < elementPosition; ++i, ++itMapNi) {} |
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| 472 | itMapNj = itMapNi; ++itMapNj; |
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[775] | 473 | |
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[1482] | 474 | if (CDomain::type_attr::rectilinear == domain->type || CDomain::type_attr::curvilinear == domain->type || |
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| 475 | this->isRectilinear(fieldId) || this->isCurvilinear(fieldId)) |
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[775] | 476 | { |
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[1064] | 477 | if (!domain->nj_glo.isEmpty() && (domain->nj_glo != itMapNj->second)) |
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| 478 | { |
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| 479 | ERROR("void CNc4DataInput::readDomainAttributesFromFile(...)", |
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| 480 | << "The domain " << domain->getDomainOutputName() |
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| 481 | << " has nj_glo read from file " << this->filename << " and nj_glo provided from model" |
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| 482 | << " are not coherent. They should be the same." << std::endl |
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| 483 | << " nj_glo read from file: "<< itMapNj->second |
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| 484 | << " nj_glo from model: "<< domain->nj_glo << std::endl); |
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| 485 | } |
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[775] | 486 | domain->nj_glo.setValue(itMapNj->second); |
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[1064] | 487 | |
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| 488 | if (!domain->ni_glo.isEmpty() && (domain->ni_glo != itMapNi->second)) |
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| 489 | { |
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| 490 | ERROR("void CNc4DataInput::readDomainAttributesFromFile(...)", |
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| 491 | << "The domain " << domain->getDomainOutputName() |
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| 492 | << " has ni_glo read from file " << this->filename << " and ni_glo provided from model" |
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| 493 | << " are not coherent. They should be the same." << std::endl |
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| 494 | << " ni_glo read from file: "<< itMapNi->second |
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| 495 | << " ni_glo from model: "<< domain->ni_glo << std::endl); |
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| 496 | } |
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[783] | 497 | domain->ni_glo.setValue(itMapNi->second); |
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[775] | 498 | } |
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[1482] | 499 | else if (CDomain::type_attr::unstructured == domain->type|| this->isUnstructured(fieldId)) |
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[775] | 500 | { |
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[783] | 501 | domain->nj_glo.setValue(1); |
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[1064] | 502 | |
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| 503 | if (!domain->ni_glo.isEmpty() && (domain->ni_glo != itMapNi->second)) |
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| 504 | { |
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| 505 | ERROR("void CNc4DataInput::readDomainAttributesFromFile(...)", |
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| 506 | << "The domain " << domain->getDomainOutputName() |
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| 507 | << " has ni_glo read from file " << this->filename << " and ni_glo provided from model" |
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| 508 | << " are not coherent. They should be the same." << std::endl |
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| 509 | << " ni_glo read from file: "<< itMapNi->second |
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| 510 | << " ni_glo from model: "<< domain->ni_glo << std::endl); |
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| 511 | } |
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[783] | 512 | domain->ni_glo.setValue(itMapNi->second); |
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[775] | 513 | } |
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| 514 | } |
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| 515 | |
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| 516 | /*! |
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| 517 | Read attributes of an axis from a file |
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| 518 | \param [in] axis axis whose attributes are read from the file |
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| 519 | \param [in] dimSizeMap Dimensions and and their corresponding names and size read from file |
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| 520 | \param [in] emelentPosition position of axis in grid |
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[782] | 521 | \param [in] fieldId id (or name) associated with the grid |
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[775] | 522 | */ |
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[783] | 523 | void CNc4DataInput::readAxisAttributesFromFile(CAxis* axis, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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[775] | 524 | int elementPosition, const StdString& fieldId) |
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| 525 | { |
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[783] | 526 | std::list<std::pair<StdString, StdSize> >::const_iterator itMapN = dimSizeMap.begin(), |
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| 527 | iteMap = dimSizeMap.end(); |
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[775] | 528 | for (int i = 0; i < elementPosition; ++i, ++itMapN) {} |
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[1064] | 529 | |
---|
| 530 | if (!axis->n_glo.isEmpty() && (axis->n_glo != itMapN->second)) |
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| 531 | { |
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| 532 | ERROR("void CNc4DataInput::readAxisAttributesFromFile(...)", |
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| 533 | << "The axis " << axis->getAxisOutputName() |
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| 534 | << " has n_glo read from file " << this->filename << " and n_glo provided from model" |
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| 535 | << " are not coherent. They should be the same." << std::endl |
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| 536 | << " n_glo read from file: "<< itMapN->second |
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| 537 | << " n_glo from model: "<< axis->n_glo << std::endl); |
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| 538 | } |
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[775] | 539 | axis->n_glo.setValue(itMapN->second); |
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| 540 | } |
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| 541 | |
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| 542 | /*! |
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[782] | 543 | Read attribute value of an axis from a file |
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[775] | 544 | \param [in] axis axis whose attributes are read from the file |
---|
| 545 | \param [in] dimSizeMap Dimensions and and their corresponding names and size read from file |
---|
| 546 | \param [in] emelentPosition position of axis in grid |
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[782] | 547 | \param [in] fieldId id (or name) associated with the grid |
---|
[775] | 548 | */ |
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[783] | 549 | void CNc4DataInput::readAxisAttributeValueFromFile(CAxis* axis, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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[775] | 550 | int elementPosition, const StdString& fieldId) |
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| 551 | { |
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[783] | 552 | std::list<std::pair<StdString, StdSize> >::const_iterator itMapN = dimSizeMap.begin(), |
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| 553 | iteMap = dimSizeMap.end(); |
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[775] | 554 | for (int i = 0; i < elementPosition; ++i, ++itMapN) {} |
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| 555 | |
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| 556 | { // Read axis value |
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[1460] | 557 | bool hasValue = SuperClassWriter::hasVariable(itMapN->first); |
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| 558 | if (hasValue) |
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| 559 | { |
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| 560 | std::vector<StdSize> nBegin(1, 0), nSize(1, itMapN->second); |
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| 561 | CArray<double,1> readAxisValue(itMapN->second); |
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| 562 | readFieldVariableValue(readAxisValue, itMapN->first, nBegin, nSize, true); |
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| 563 | int begin = 0, n = itMapN->second; |
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| 564 | if (!axis->begin.isEmpty()) begin = axis->begin.getValue(); |
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| 565 | if (!axis->n.isEmpty()) n = axis->n.getValue(); |
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| 566 | axis->value.resize(n); |
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| 567 | for (int i = 0; i < n; ++i) axis->value(i) = readAxisValue(begin + i); |
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| 568 | } |
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[775] | 569 | } |
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| 570 | } |
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| 571 | |
---|
[967] | 572 | /*! |
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| 573 | Read attributes of a scalar from a file |
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| 574 | \param [in] scalar scalar whose attributes are read from the file |
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| 575 | \param [in] dimSizeMap Dimensions and and their corresponding names and size read from file |
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| 576 | \param [in] emelentPosition position of scalar in grid |
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| 577 | \param [in] fieldId id (or name) associated with the grid |
---|
| 578 | */ |
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| 579 | void CNc4DataInput::readScalarAttributesFromFile(CScalar* scalar, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
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| 580 | int elementPosition, const StdString& fieldId) |
---|
| 581 | { |
---|
[1064] | 582 | /*Nothing to do */ |
---|
[967] | 583 | } |
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| 584 | |
---|
| 585 | /*! |
---|
| 586 | Read attribute value of an axis from a file |
---|
| 587 | \param [in] axis axis whose attributes are read from the file |
---|
| 588 | \param [in] dimSizeMap Dimensions and and their corresponding names and size read from file |
---|
| 589 | \param [in] emelentPosition position of axis in grid |
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| 590 | \param [in] fieldId id (or name) associated with the grid |
---|
| 591 | */ |
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| 592 | void CNc4DataInput::readScalarAttributeValueFromFile(CScalar* scalar, std::list<std::pair<StdString, StdSize> >& dimSizeMap, |
---|
| 593 | int elementPosition, const StdString& fieldId) |
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| 594 | { |
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[1064] | 595 | /*Nothing to do */ |
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[967] | 596 | } |
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| 597 | |
---|
[599] | 598 | void CNc4DataInput::closeFile_(void) |
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| 599 | { |
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| 600 | SuperClassWriter::close(); |
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| 601 | } |
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[335] | 602 | } // namespace xios |
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