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source: XIOS/dev/branch_openmp/src/io/nc4_data_output.cpp @ 1328

Last change on this file since 1328 was 1328, checked in by yushan, 6 years ago
dev_omp
Property copyright set to Software name : XIOS (Xml I/O Server) http://forge.ipsl.jussieu.fr/ioserver Creation date : January 2009 Licence : CeCCIL version2 see license file in root directory : Licence_CeCILL_V2-en.txt or http://www.cecill.info/licences/Licence_CeCILL_V2-en.html Holder : CEA/LSCE (Laboratoire des Sciences du CLimat et de l'Environnement) CNRS/IPSL (Institut Pierre Simon Laplace) Project Manager : Yann Meurdesoif yann.meurdesoif@cea.fr Property svn:executable set to ``*
File size: 121.1 KB

Rev	Line
[219]	1	#include "nc4_data_output.hpp"
	2
	3	#include <boost/lexical_cast.hpp>
[352]	4	#include "attribute_template.hpp"
	5	#include "group_template.hpp"
[219]	6
	7	#include "file.hpp"
	8	#include "calendar.hpp"
[278]	9	#include "context.hpp"
[300]	10	#include "context_server.hpp"
[498]	11	#include "netCdfException.hpp"
	12	#include "exception.hpp"
[1205]	13	#include "timer.hpp"
[1048]	14	#include "uuid.hpp"
[335]	15	namespace xios
[219]	16	{
[878]	17	/// ////////////////////// Dfinitions ////////////////////// ///
[219]	18	CNc4DataOutput::CNc4DataOutput
[1046]	19	(CFile* file, const StdString & filename, bool exist)
[219]	20	: SuperClass()
	21	, SuperClassWriter(filename, exist)
	22	, filename(filename)
[1096]	23	, file(file),hasTimeInstant(false),hasTimeCentered(false), timeCounterType(none)
[219]	24	{
[989]	25	SuperClass::type = MULTI_FILE;
[219]	26	}
	27
	28	CNc4DataOutput::CNc4DataOutput
[1046]	29	(CFile* file, const StdString & filename, bool exist, bool useClassicFormat, bool useCFConvention,
[1328]	30	ep_lib::MPI_Comm comm_file, bool multifile, bool isCollective, const StdString& timeCounterName)
[219]	31	: SuperClass()
[878]	32	, SuperClassWriter(filename, exist, useClassicFormat, useCFConvention, &comm_file, multifile, timeCounterName)
[379]	33	, comm_file(comm_file)
[219]	34	, filename(filename)
[335]	35	, isCollective(isCollective)
[1096]	36	, file(file),hasTimeInstant(false),hasTimeCentered(false), timeCounterType(none)
[219]	37	{
[989]	38	SuperClass::type = (multifile) ? MULTI_FILE : ONE_FILE;
[219]	39	}
	40
	41	CNc4DataOutput::~CNc4DataOutput(void)
[879]	42	{ /* Ne rien faire de plus */ }
[219]	43
	44	///--------------------------------------------------------------
	45
	46	const StdString & CNc4DataOutput::getFileName(void) const
	47	{
	48	return (this->filename);
	49	}
	50
	51	//---------------------------------------------------------------
	52
[347]	53	void CNc4DataOutput::writeDomain_(CDomain* domain)
[219]	54	{
[881]	55	if (domain->type == CDomain::type_attr::unstructured)
	56	{
	57	if (SuperClassWriter::useCFConvention)
	58	writeUnstructuredDomain(domain) ;
	59	else
	60	writeUnstructuredDomainUgrid(domain) ;
	61	return ;
	62	}
[488]	63
[347]	64	CContext* context = CContext::getCurrent() ;
[300]	65	CContextServer* server=context->server ;
[488]	66
[219]	67	if (domain->IsWritten(this->filename)) return;
	68	domain->checkAttributes();
[488]	69
	70	if (domain->isEmpty())
[881]	71	if (SuperClass::type==MULTI_FILE) return;
[219]	72
	73	std::vector<StdString> dim0, dim1;
[772]	74	StdString domid = domain->getDomainOutputName();
[318]	75	StdString appendDomid = (singleDomain) ? "" : "_"+domid ;
[706]	76	if (isWrittenDomain(domid)) return ;
[774]	77	else setWrittenDomain(domid);
[449]	78
	79
[1205]	80	StdString dimXid, dimYid ;
[488]	81
[1045]	82	nc_type typePrec ;
	83	if (domain->prec.isEmpty()) typePrec = NC_FLOAT ;
	84	else if (domain->prec==4) typePrec = NC_FLOAT ;
	85	else if (domain->prec==8) typePrec = NC_DOUBLE ;
	86
[664]	87	bool isRegularDomain = (domain->type == CDomain::type_attr::rectilinear);
[449]	88	switch (domain->type)
[433]	89	{
[449]	90	case CDomain::type_attr::curvilinear :
	91	dimXid = StdString("x").append(appendDomid);
	92	dimYid = StdString("y").append(appendDomid);
	93	break ;
[664]	94	case CDomain::type_attr::rectilinear :
[449]	95	dimXid = StdString("lon").append(appendDomid);
	96	dimYid = StdString("lat").append(appendDomid);
	97	break;
[488]	98	}
	99
[617]	100	StdString dimVertId = StdString("nvertex").append(appendDomid);
	101
[449]	102	string lonid,latid,bounds_lonid,bounds_latid ;
[611]	103	string areaId = "area" + appendDomid;
[391]	104	/*
[300]	105	StdString lonid_loc = (server->intraCommSize > 1)
[318]	106	? StdString("lon").append(appendDomid).append("_local")
[278]	107	: lonid;
[300]	108	StdString latid_loc = (server->intraCommSize > 1)
[318]	109	? StdString("lat").append(appendDomid).append("_local")
[278]	110	: latid;
[391]	111	*/
[219]	112
[498]	113	try
[219]	114	{
[498]	115	switch (SuperClass::type)
	116	{
	117	case (MULTI_FILE) :
	118	{
	119	// if (domain->isEmpty()) return;
[488]	120
[498]	121	if (server->intraCommSize > 1)
	122	{
	123	// SuperClassWriter::addDimension(lonid, domain->zoom_ni.getValue());
	124	// SuperClassWriter::addDimension(latid, domain->zoom_nj.getValue());
	125	}
[286]	126
[498]	127	switch (domain->type)
	128	{
	129	case CDomain::type_attr::curvilinear :
	130	dim0.push_back(dimYid); dim0.push_back(dimXid);
	131	lonid = StdString("nav_lon").append(appendDomid);
	132	latid = StdString("nav_lat").append(appendDomid);
	133	break ;
[664]	134	case CDomain::type_attr::rectilinear :
[498]	135	lonid = StdString("lon").append(appendDomid);
	136	latid = StdString("lat").append(appendDomid);
	137	dim0.push_back(dimYid);
	138	dim1.push_back(dimXid);
	139	break;
	140	}
[488]	141
[617]	142	bounds_lonid = StdString("bounds_lon").append(appendDomid);
	143	bounds_latid = StdString("bounds_lat").append(appendDomid);
	144
[616]	145	SuperClassWriter::addDimension(dimXid, domain->zoom_ni_srv);
	146	SuperClassWriter::addDimension(dimYid, domain->zoom_nj_srv);
[488]	147
[617]	148	if (domain->hasBounds)
	149	SuperClassWriter::addDimension(dimVertId, domain->nvertex);
	150
[498]	151	if (server->intraCommSize > 1)
	152	{
[616]	153	this->writeLocalAttributes(domain->zoom_ibegin_srv,
	154	domain->zoom_ni_srv,
	155	domain->zoom_jbegin_srv,
	156	domain->zoom_nj_srv,
	157	appendDomid);
[488]	158
[628]	159	if (singleDomain)
	160	this->writeLocalAttributes_IOIPSL(dimXid, dimYid,
	161	domain->zoom_ibegin_srv,
	162	domain->zoom_ni_srv,
	163	domain->zoom_jbegin_srv,
	164	domain->zoom_nj_srv,
	165	domain->ni_glo,domain->nj_glo,
	166	server->intraCommRank,server->intraCommSize);
[449]	167	}
[488]	168
[665]	169	if (domain->hasLonLat)
[498]	170	{
[665]	171	switch (domain->type)
	172	{
	173	case CDomain::type_attr::curvilinear :
[1045]	174	SuperClassWriter::addVariable(latid, typePrec, dim0);
	175	SuperClassWriter::addVariable(lonid, typePrec, dim0);
[665]	176	break ;
	177	case CDomain::type_attr::rectilinear :
[1045]	178	SuperClassWriter::addVariable(latid, typePrec, dim0);
	179	SuperClassWriter::addVariable(lonid, typePrec, dim1);
[665]	180	break ;
	181	}
[488]	182
[665]	183	this->writeAxisAttributes(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid);
	184	this->writeAxisAttributes(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid);
[219]	185
[665]	186	if (domain->hasBounds)
	187	{
	188	SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid);
	189	SuperClassWriter::addAttribute("bounds", bounds_latid, &latid);
[617]	190
[665]	191	dim0.clear();
	192	dim0.push_back(dimYid);
	193	dim0.push_back(dimXid);
	194	dim0.push_back(dimVertId);
[1045]	195	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0);
	196	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0);
[665]	197	}
[617]	198	}
	199
[498]	200	dim0.clear();
[616]	201	dim0.push_back(dimYid);
[498]	202	dim0.push_back(dimXid);
[219]	203
	204
[498]	205	// supress mask if (server->intraCommSize > 1)
	206	// supress mask {
	207	// supress mask SuperClassWriter::addVariable(maskid, NC_INT, dim0);
	208	// supress mask
	209	// supress mask this->writeMaskAttributes(maskid,
	210	// supress mask domain->data_dim.getValue()/*,
	211	// supress mask domain->data_ni.getValue(),
	212	// supress mask domain->data_nj.getValue(),
	213	// supress mask domain->data_ibegin.getValue(),
	214	// supress mask domain->data_jbegin.getValue()*/);
	215	// supress mask }
[488]	216
[498]	217	//SuperClassWriter::setDefaultValue(maskid, &dvm);
[219]	218
[611]	219	if (domain->hasArea)
	220	{
[1045]	221	SuperClassWriter::addVariable(areaId, typePrec, dim0);
[614]	222	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
[611]	223	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
	224	}
	225
[498]	226	SuperClassWriter::definition_end();
[449]	227
[665]	228	if (domain->hasLonLat)
[498]	229	{
[665]	230	switch (domain->type)
	231	{
	232	case CDomain::type_attr::curvilinear :
	233	SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0);
	234	SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0);
	235	break;
	236	case CDomain::type_attr::rectilinear :
	237	CArray<double,1> lat = domain->latvalue_srv(Range(fromStart,toEnd,domain->zoom_ni_srv)) ;
	238	SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0);
	239	CArray<double,1> lon=domain->lonvalue_srv(Range(0,domain->zoom_ni_srv-1)) ;
	240	SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0);
	241	break;
	242	}
[611]	243
[665]	244	if (domain->hasBounds)
	245	{
	246	SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0);
	247	SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0);
	248	}
[617]	249	}
	250
[611]	251	if (domain->hasArea)
	252	SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0);
	253
[498]	254	SuperClassWriter::definition_start();
[219]	255
[498]	256	break;
	257	}
	258	case (ONE_FILE) :
	259	{
[631]	260	SuperClassWriter::addDimension(dimXid, domain->global_zoom_ni);
	261	SuperClassWriter::addDimension(dimYid, domain->global_zoom_nj);
[286]	262
[617]	263	if (domain->hasBounds)
	264	SuperClassWriter::addDimension(dimVertId, domain->nvertex);
	265
[665]	266	if (domain->hasLonLat)
[498]	267	{
[665]	268	switch (domain->type)
	269	{
	270	case CDomain::type_attr::curvilinear :
	271	dim0.push_back(dimYid); dim0.push_back(dimXid);
	272	lonid = StdString("nav_lon").append(appendDomid);
	273	latid = StdString("nav_lat").append(appendDomid);
[1045]	274	SuperClassWriter::addVariable(latid, typePrec, dim0);
	275	SuperClassWriter::addVariable(lonid, typePrec, dim0);
[665]	276	break;
[449]	277
[665]	278	case CDomain::type_attr::rectilinear :
	279	dim0.push_back(dimYid);
	280	dim1.push_back(dimXid);
	281	lonid = StdString("lon").append(appendDomid);
	282	latid = StdString("lat").append(appendDomid);
[1045]	283	SuperClassWriter::addVariable(latid, typePrec, dim0);
	284	SuperClassWriter::addVariable(lonid, typePrec, dim1);
[665]	285	break;
	286	}
	287
	288	bounds_lonid = StdString("bounds_lon").append(appendDomid);
	289	bounds_latid = StdString("bounds_lat").append(appendDomid);
	290
	291	this->writeAxisAttributes
	292	(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid);
	293	this->writeAxisAttributes
	294	(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid);
	295
	296	if (domain->hasBounds)
	297	{
	298	SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid);
	299	SuperClassWriter::addAttribute("bounds", bounds_latid, &latid);
	300
	301	dim0.clear();
[498]	302	dim0.push_back(dimYid);
[665]	303	dim0.push_back(dimXid);
	304	dim0.push_back(dimVertId);
[1045]	305	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0);
	306	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0);
[665]	307	}
[498]	308	}
[611]	309
	310	if (domain->hasArea)
	311	{
	312	dim0.clear();
	313	dim0.push_back(dimYid); dim0.push_back(dimXid);
[1045]	314	SuperClassWriter::addVariable(areaId, typePrec, dim0);
[614]	315	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
[611]	316	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
	317	dim0.clear();
	318	}
	319
	320	SuperClassWriter::definition_end();
[286]	321
[498]	322	switch (domain->type)
[384]	323	{
[498]	324	case CDomain::type_attr::curvilinear :
[449]	325	{
[498]	326	std::vector<StdSize> start(2) ;
	327	std::vector<StdSize> count(2) ;
	328	if (domain->isEmpty())
	329	{
[611]	330	start[0]=0 ; start[1]=0 ;
[498]	331	count[0]=0 ; count[1]=0 ;
	332	}
	333	else
	334	{
[631]	335	start[1]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
	336	start[0]=domain->zoom_jbegin_srv-domain->global_zoom_jbegin;
[498]	337	count[1]=domain->zoom_ni_srv ; count[0]=domain->zoom_nj_srv ;
	338	}
[488]	339
[665]	340	if (domain->hasLonLat)
	341	{
	342	SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count);
	343	SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count);
	344	}
[498]	345	break;
	346	}
[664]	347	case CDomain::type_attr::rectilinear :
[449]	348	{
[665]	349	if (domain->hasLonLat)
[498]	350	{
[665]	351	std::vector<StdSize> start(1) ;
	352	std::vector<StdSize> count(1) ;
	353	if (domain->isEmpty())
	354	{
	355	start[0]=0 ;
	356	count[0]=0 ;
	357	SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count);
	358	SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count);
[449]	359
[665]	360	}
	361	else
	362	{
	363	start[0]=domain->zoom_jbegin_srv-domain->global_zoom_jbegin;
	364	count[0]=domain->zoom_nj_srv ;
	365	CArray<double,1> lat = domain->latvalue_srv(Range(fromStart,toEnd,domain->zoom_ni_srv)) ;
	366	SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0,&start,&count);
	367
	368	start[0]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
	369	count[0]=domain->zoom_ni_srv ;
	370	CArray<double,1> lon=domain->lonvalue_srv(Range(0,domain->zoom_ni_srv-1)) ;
	371	SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0,&start,&count);
	372	}
[498]	373	}
	374	break;
[449]	375	}
[384]	376	}
[611]	377
[617]	378	if (domain->hasBounds)
	379	{
	380	std::vector<StdSize> start(3);
	381	std::vector<StdSize> count(3);
	382	if (domain->isEmpty())
	383	{
	384	start[2] = start[1] = start[0] = 0;
	385	count[2] = count[1] = count[0] = 0;
	386	}
	387	else
	388	{
	389	start[2] = 0;
[631]	390	start[1] = domain->zoom_ibegin_srv - domain->global_zoom_ibegin;
	391	start[0] = domain->zoom_jbegin_srv - domain->global_zoom_jbegin;
[617]	392	count[2] = domain->nvertex;
	393	count[1] = domain->zoom_ni_srv;
	394	count[0] = domain->zoom_nj_srv;
	395	}
[625]	396
[878]	397	SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0, &start, &count);
	398	SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0, &start, &count);
[617]	399	}
	400
[611]	401	if (domain->hasArea)
	402	{
	403	std::vector<StdSize> start(2);
	404	std::vector<StdSize> count(2);
	405
	406	if (domain->isEmpty())
	407	{
	408	start[0] = 0; start[1] = 0;
	409	count[0] = 0; count[1] = 0;
	410	}
	411	else
	412	{
[631]	413	start[1] = domain->zoom_ibegin_srv - domain->global_zoom_ibegin;
	414	start[0] = domain->zoom_jbegin_srv - domain->global_zoom_jbegin;
[611]	415	count[1] = domain->zoom_ni_srv;
	416	count[0] = domain->zoom_nj_srv;
	417	}
	418
	419	SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0, &start, &count);
	420	}
	421
[498]	422	SuperClassWriter::definition_start();
	423	break;
	424	}
	425	default :
	426	ERROR("CNc4DataOutput::writeDomain(domain)",
	427	<< "[ type = " << SuperClass::type << "]"
	428	<< " not implemented yet !");
	429	}
[449]	430	}
[498]	431	catch (CNetCdfException& e)
	432	{
	433	StdString msg("On writing the domain : ");
	434	msg.append(domid); msg.append("\n");
	435	msg.append("In the context : ");
	436	msg.append(context->getId()); msg.append("\n");
	437	msg.append(e.what());
	438	ERROR("CNc4DataOutput::writeDomain_(CDomain* domain)", << msg);
	439	}
	440
[449]	441	domain->addRelFile(this->filename);
	442	}
	443
[879]	444	//--------------------------------------------------------------
[878]	445
[879]	446	void CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain)
	447	{
	448	CContext* context = CContext::getCurrent() ;
	449	CContextServer* server=context->server ;
[878]	450
[879]	451	if (domain->IsWritten(this->filename)) return;
	452	domain->checkAttributes();
	453	if (domain->isEmpty())
	454	if (SuperClass::type==MULTI_FILE) return ;
[878]	455
[1045]	456	nc_type typePrec ;
	457	if (domain->prec.isEmpty()) typePrec = NC_FLOAT ;
	458	else if (domain->prec==4) typePrec = NC_FLOAT ;
	459	else if (domain->prec==8) typePrec = NC_DOUBLE ;
	460
[879]	461	std::vector<StdString> dim0;
	462	StdString domid = domain->getDomainOutputName();
	463	StdString domainName = domain->name;
[924]	464	domain->assignMesh(domainName, domain->nvertex);
[1328]	465	domain->mesh->createMeshEpsilon(server->intraComm, domain->lonvalue_srv, domain->latvalue_srv, domain->bounds_lon_srv, domain->bounds_lat_srv);
[878]	466
[879]	467	StdString node_x = domainName + "_node_x";
	468	StdString node_y = domainName + "_node_y";
[878]	469
[879]	470	StdString edge_x = domainName + "_edge_x";
	471	StdString edge_y = domainName + "_edge_y";
	472	StdString edge_nodes = domainName + "_edge_nodes";
[878]	473
[879]	474	StdString face_x = domainName + "_face_x";
	475	StdString face_y = domainName + "_face_y";
	476	StdString face_nodes = domainName + "_face_nodes";
[902]	477	StdString face_edges = domainName + "_face_edges";
	478	StdString edge_faces = domainName + "_edge_face_links";
	479	StdString face_faces = domainName + "_face_links";
[878]	480
[879]	481	StdString dimNode = "n" + domainName + "_node";
	482	StdString dimEdge = "n" + domainName + "_edge";
	483	StdString dimFace = "n" + domainName + "_face";
	484	StdString dimVertex = "n" + domainName + "_vertex";
	485	StdString dimTwo = "Two";
[878]	486
[879]	487	if (!SuperClassWriter::dimExist(dimTwo)) SuperClassWriter::addDimension(dimTwo, 2);
	488	if (!isWrittenDomain(domid))
	489	{
	490	dim0.clear();
	491	SuperClassWriter::addVariable(domainName, NC_INT, dim0);
	492	SuperClassWriter::addAttribute("cf_role", StdString("mesh_topology"), &domainName);
[924]	493	SuperClassWriter::addAttribute("long_name", StdString("Topology data of 2D unstructured mesh"), &domainName);
	494	SuperClassWriter::addAttribute("topology_dimension", 2, &domainName);
[879]	495	SuperClassWriter::addAttribute("node_coordinates", node_x + " " + node_y, &domainName);
	496	}
[878]	497
[879]	498	try
	499	{
	500	switch (SuperClass::type)
	501	{
	502	case (ONE_FILE) :
	503	{
	504	// Adding nodes
	505	if (domain->nvertex == 1)
	506	{
	507	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
	508	{
[902]	509	SuperClassWriter::addDimension(dimNode, domain->ni_glo);
[879]	510	dim0.clear();
	511	dim0.push_back(dimNode);
[1045]	512	SuperClassWriter::addVariable(node_x, typePrec, dim0);
[879]	513	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
[924]	514	SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x);
[879]	515	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
[1045]	516	SuperClassWriter::addVariable(node_y, typePrec, dim0);
[879]	517	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
[924]	518	SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y);
[879]	519	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
	520	}
	521	} // domain->nvertex == 1
[878]	522
[879]	523	// Adding edges and nodes, if nodes have not been defined previously
	524	if (domain->nvertex == 2)
	525	{
	526	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
	527	{
[924]	528	SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo);
[879]	529	dim0.clear();
	530	dim0.push_back(dimNode);
[1045]	531	SuperClassWriter::addVariable(node_x, typePrec, dim0);
[879]	532	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
[924]	533	SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x);
[879]	534	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
[1045]	535	SuperClassWriter::addVariable(node_y, typePrec, dim0);
[879]	536	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
[924]	537	SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y);
[879]	538	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
	539	}
[924]	540	SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName);
	541	SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName);
	542	SuperClassWriter::addDimension(dimEdge, domain->ni_glo);
	543	dim0.clear();
	544	dim0.push_back(dimEdge);
[1045]	545	SuperClassWriter::addVariable(edge_x, typePrec, dim0);
[924]	546	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x);
	547	SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x);
	548	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x);
[1045]	549	SuperClassWriter::addVariable(edge_y, typePrec, dim0);
[924]	550	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y);
	551	SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y);
	552	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y);
	553	dim0.clear();
	554	dim0.push_back(dimEdge);
	555	dim0.push_back(dimTwo);
	556	SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0);
	557	SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes);
	558	SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes);
	559	SuperClassWriter::addAttribute("start_index", 0, &edge_nodes);
[879]	560	} // domain->nvertex == 2
[878]	561
[879]	562	// Adding faces, edges, and nodes, if edges and nodes have not been defined previously
	563	if (domain->nvertex > 2)
	564	{
	565	// Nodes
	566	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
	567	{
[924]	568	SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo);
[879]	569	dim0.clear();
	570	dim0.push_back(dimNode);
[1045]	571	SuperClassWriter::addVariable(node_x, typePrec, dim0);
[879]	572	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
[924]	573	SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x);
[879]	574	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
[1045]	575	SuperClassWriter::addVariable(node_y, typePrec, dim0);
[879]	576	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
[924]	577	SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y);
[879]	578	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
	579	}
	580	if (!SuperClassWriter::varExist(edge_x) \|\| !SuperClassWriter::varExist(edge_y))
	581	{
	582	SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName);
	583	SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName);
[924]	584	SuperClassWriter::addDimension(dimEdge, domain->mesh->nbEdgesGlo);
[879]	585	dim0.clear();
	586	dim0.push_back(dimEdge);
[1045]	587	SuperClassWriter::addVariable(edge_x, typePrec, dim0);
[879]	588	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x);
[924]	589	SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x);
[879]	590	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x);
[1045]	591	SuperClassWriter::addVariable(edge_y, typePrec, dim0);
[879]	592	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y);
[924]	593	SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y);
[879]	594	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y);
	595	dim0.clear();
	596	dim0.push_back(dimEdge);
	597	dim0.push_back(dimTwo);
	598	SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0);
	599	SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes);
	600	SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes);
	601	SuperClassWriter::addAttribute("start_index", 0, &edge_nodes);
	602	}
[924]	603	SuperClassWriter::addAttribute("face_coordinates", face_x + " " + face_y, &domainName);
	604	SuperClassWriter::addAttribute("face_node_connectivity", face_nodes, &domainName);
	605	SuperClassWriter::addDimension(dimFace, domain->ni_glo);
	606	SuperClassWriter::addDimension(dimVertex, domain->nvertex);
	607	dim0.clear();
	608	dim0.push_back(dimFace);
[1045]	609	SuperClassWriter::addVariable(face_x, typePrec, dim0);
[924]	610	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &face_x);
	611	SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh faces."), &face_x);
	612	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &face_x);
[1045]	613	SuperClassWriter::addVariable(face_y, typePrec, dim0);
[924]	614	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &face_y);
	615	SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh faces."), &face_y);
	616	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &face_y);
	617	dim0.clear();
	618	dim0.push_back(dimFace);
	619	dim0.push_back(dimVertex);
	620	SuperClassWriter::addVariable(face_nodes, NC_INT, dim0);
	621	SuperClassWriter::addAttribute("cf_role", StdString("face_node_connectivity"), &face_nodes);
	622	SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its corner nodes."), &face_nodes);
	623	SuperClassWriter::addAttribute("start_index", 0, &face_nodes);
	624	dim0.clear();
	625	dim0.push_back(dimFace);
	626	dim0.push_back(dimVertex);
	627	SuperClassWriter::addVariable(face_edges, NC_INT, dim0);
	628	SuperClassWriter::addAttribute("cf_role", StdString("face_edge_connectivity"), &face_edges);
	629	SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its edges."), &face_edges);
	630	SuperClassWriter::addAttribute("start_index", 0, &face_edges);
[929]	631	SuperClassWriter::addAttribute("_FillValue", 999999, &face_edges);
[924]	632	dim0.clear();
	633	dim0.push_back(dimEdge);
	634	dim0.push_back(dimTwo);
	635	SuperClassWriter::addVariable(edge_faces, NC_INT, dim0);
	636	SuperClassWriter::addAttribute("cf_role", StdString("edge_face connectivity"), &edge_faces);
	637	SuperClassWriter::addAttribute("long_name", StdString("neighbor faces for edges"), &edge_faces);
	638	SuperClassWriter::addAttribute("start_index", 0, &edge_faces);
	639	SuperClassWriter::addAttribute("_FillValue", -999, &edge_faces);
	640	SuperClassWriter::addAttribute("comment", StdString("missing neighbor faces are indicated using _FillValue"), &edge_faces);
	641	dim0.clear();
	642	dim0.push_back(dimFace);
	643	dim0.push_back(dimVertex);
	644	SuperClassWriter::addVariable(face_faces, NC_INT, dim0);
	645	SuperClassWriter::addAttribute("cf_role", StdString("face_face connectivity"), &face_faces);
	646	SuperClassWriter::addAttribute("long_name", StdString("Indicates which other faces neighbor each face"), &face_faces);
	647	SuperClassWriter::addAttribute("start_index", 0, &face_faces);
[929]	648	SuperClassWriter::addAttribute("_FillValue", 999999, &face_faces);
[924]	649	SuperClassWriter::addAttribute("flag_values", -1, &face_faces);
	650	SuperClassWriter::addAttribute("flag_meanings", StdString("out_of_mesh"), &face_faces);
[879]	651	} // domain->nvertex > 2
[878]	652
[879]	653	SuperClassWriter::definition_end();
[878]	654
[924]	655	std::vector<StdSize> startEdges(1) ;
	656	std::vector<StdSize> countEdges(1) ;
	657	std::vector<StdSize> startNodes(1) ;
	658	std::vector<StdSize> countNodes(1) ;
	659	std::vector<StdSize> startFaces(1) ;
	660	std::vector<StdSize> countFaces(1) ;
	661	std::vector<StdSize> startEdgeNodes(2) ;
	662	std::vector<StdSize> countEdgeNodes(2) ;
	663	std::vector<StdSize> startEdgeFaces(2) ;
	664	std::vector<StdSize> countEdgeFaces(2) ;
	665	std::vector<StdSize> startFaceConctv(2) ;
	666	std::vector<StdSize> countFaceConctv(2) ;
[902]	667
[879]	668	if (!isWrittenDomain(domid))
	669	{
	670	if (domain->nvertex == 1)
	671	{
[924]	672	if (domain->isEmpty())
	673	{
	674	startNodes[0]=0 ;
	675	countNodes[0]=0 ;
	676	}
	677	else
	678	{
	679	startNodes[0] = domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
	680	countNodes[0] = domain->zoom_ni_srv ;
	681	}
	682
	683	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes);
	684	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes);
[879]	685	}
	686	else if (domain->nvertex == 2)
[924]	687	{
	688	if (domain->isEmpty())
	689	{
	690	startEdges[0]=0 ;
	691	countEdges[0]=0 ;
	692	startNodes[0]=0 ;
	693	countNodes[0]=0 ;
	694	startEdgeNodes[0]=0;
	695	startEdgeNodes[1]=0;
	696	countEdgeNodes[0]=0;
	697	countEdgeNodes[1]=0;
	698
	699	}
	700	else
	701	{
	702	startEdges[0] = domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
	703	countEdges[0] = domain->zoom_ni_srv ;
	704	startNodes[0] = domain->mesh->node_start;
	705	countNodes[0] = domain->mesh->node_count;
	706	startEdgeNodes[0] = domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
	707	startEdgeNodes[1] = 0;
	708	countEdgeNodes[0] = domain->zoom_ni_srv;
	709	countEdgeNodes[1]= 2;
	710	}
	711	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes);
	712	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes);
	713	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
	714	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
	715	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
	716	}
[879]	717	else
	718	{
[924]	719	if (domain->isEmpty())
	720	{
	721	startFaces[0] = 0 ;
	722	countFaces[0] = 0 ;
	723	startNodes[0] = 0;
	724	countNodes[0] = 0;
	725	startEdges[0] = 0;
	726	countEdges[0] = 0;
	727	startEdgeFaces[0] = 0;
	728	startEdgeFaces[1] = 0;
	729	countEdgeFaces[0] = 0;
	730	countEdgeFaces[1] = 0;
	731	startFaceConctv[0] = 0;
	732	startFaceConctv[1] = 0;
	733	countFaceConctv[0] = 0;
	734	countFaceConctv[1] = 0;
	735	}
	736	else
	737	{
	738	startFaces[0] = domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
	739	countFaces[0] = domain->zoom_ni_srv ;
	740	startNodes[0] = domain->mesh->node_start;
	741	countNodes[0] = domain->mesh->node_count;
	742	startEdges[0] = domain->mesh->edge_start;
	743	countEdges[0] = domain->mesh->edge_count;
	744	startEdgeNodes[0] = domain->mesh->edge_start;
	745	startEdgeNodes[1] = 0;
	746	countEdgeNodes[0] = domain->mesh->edge_count;
	747	countEdgeNodes[1]= 2;
	748	startEdgeFaces[0] = domain->mesh->edge_start;
	749	startEdgeFaces[1]= 0;
	750	countEdgeFaces[0] = domain->mesh->edge_count;
	751	countEdgeFaces[1]= 2;
	752	startFaceConctv[0] = domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
	753	startFaceConctv[1] = 0;
	754	countFaceConctv[0] = domain->zoom_ni_srv;
	755	countFaceConctv[1] = domain->nvertex;
	756	}
	757	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes);
	758	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes);
	759	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
	760	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
	761	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
	762	SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0, &startFaces, &countFaces);
	763	SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0, &startFaces, &countFaces);
	764	SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes, isCollective, 0, &startFaceConctv, &countFaceConctv);
	765	SuperClassWriter::writeData(domain->mesh->face_edges, face_edges, isCollective, 0, &startFaceConctv, &countFaceConctv);
	766	SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces, isCollective, 0, &startEdgeFaces, &countEdgeFaces);
	767	SuperClassWriter::writeData(domain->mesh->face_faces, face_faces, isCollective, 0, &startFaceConctv, &countFaceConctv);
[879]	768	}
	769	setWrittenDomain(domid);
	770	} // !isWrittenDomain
	771	else
	772	{
	773	if (domain->nvertex == 2)
	774	{
[924]	775	startEdges[0] = domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
	776	countEdges[0] = domain->zoom_ni_srv ;
	777	startEdgeNodes[0] = domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
	778	startEdgeNodes[1] = 0;
	779	countEdgeNodes[0] = domain->zoom_ni_srv;
	780	countEdgeNodes[1]= 2;
	781	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
	782	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
	783	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
[879]	784	}
	785	if (domain->nvertex > 2)
	786	{
[924]	787
[879]	788	if (!domain->mesh->edgesAreWritten)
	789	{
[924]	790	startEdges[0] = domain->mesh->edge_start;
	791	countEdges[0] = domain->mesh->edge_count;
	792	startEdgeNodes[0] = domain->mesh->edge_start;
	793	startEdgeNodes[1] = 0;
	794	countEdgeNodes[0] = domain->mesh->edge_count;
	795	countEdgeNodes[1]= 2;
	796	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
	797	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
	798	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
[879]	799	}
[924]	800	startFaces[0] = domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
	801	countFaces[0] = domain->zoom_ni_srv;
	802	startEdgeFaces[0] = domain->mesh->edge_start;
	803	startEdgeFaces[1]= 0;
	804	countEdgeFaces[0] = domain->mesh->edge_count;
	805	countEdgeFaces[1]= 2;
	806	startFaceConctv[0] = domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
	807	startFaceConctv[1] = 0;
	808	countFaceConctv[0] = domain->zoom_ni_srv;
	809	countFaceConctv[1]= domain->nvertex;
	810	SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0, &startFaces, &countFaces);
	811	SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0, &startFaces, &countFaces);
	812	SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes, isCollective, 0, &startFaceConctv, &countFaceConctv);
	813	SuperClassWriter::writeData(domain->mesh->face_edges, face_edges, isCollective, 0, &startFaceConctv, &countFaceConctv);
	814	SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces, isCollective, 0, &startEdgeFaces, &countEdgeFaces);
	815	SuperClassWriter::writeData(domain->mesh->face_faces, face_faces, isCollective, 0, &startFaceConctv, &countFaceConctv);
[879]	816	}
	817	}// isWrittenDomain
[878]	818
[879]	819	SuperClassWriter::definition_start();
[878]	820
[879]	821	break;
	822	} // ONE_FILE
[878]	823
[879]	824	case (MULTI_FILE) :
	825	{
	826	break;
	827	}
[878]	828
[879]	829	default :
	830	ERROR("CNc4DataOutput::writeDomain(domain)",
	831	<< "[ type = " << SuperClass::type << "]"
	832	<< " not implemented yet !");
	833	} // switch
	834	} // try
[878]	835
[879]	836	catch (CNetCdfException& e)
	837	{
	838	StdString msg("On writing the domain : ");
	839	msg.append(domid); msg.append("\n");
	840	msg.append("In the context : ");
	841	msg.append(context->getId()); msg.append("\n");
	842	msg.append(e.what());
[924]	843	ERROR("CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain)", << msg);
[879]	844	}
[878]	845
[879]	846	domain->addRelFile(this->filename);
	847	}
[878]	848
[879]	849	//--------------------------------------------------------------
[878]	850
[879]	851	void CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)
[449]	852	{
	853	CContext* context = CContext::getCurrent() ;
	854	CContextServer* server=context->server ;
[488]	855
[449]	856	if (domain->IsWritten(this->filename)) return;
	857	domain->checkAttributes();
[488]	858
	859	if (domain->isEmpty())
[449]	860	if (SuperClass::type==MULTI_FILE) return ;
	861
	862	std::vector<StdString> dim0, dim1;
[772]	863	StdString domid = domain->getDomainOutputName();
[705]	864	if (isWrittenDomain(domid)) return ;
[774]	865	else setWrittenDomain(domid);
[705]	866
[449]	867	StdString appendDomid = (singleDomain) ? "" : "_"+domid ;
	868
	869	StdString dimXid = StdString("cell").append(appendDomid);
	870	StdString dimVertId = StdString("nvertex").append(appendDomid);
[488]	871
[449]	872	string lonid,latid,bounds_lonid,bounds_latid ;
[611]	873	string areaId = "area" + appendDomid;
[449]	874
[1045]	875	nc_type typePrec ;
	876	if (domain->prec.isEmpty()) typePrec = NC_FLOAT ;
	877	else if (domain->prec==4) typePrec = NC_FLOAT ;
	878	else if (domain->prec==8) typePrec = NC_DOUBLE ;
	879
[498]	880	try
[449]	881	{
[498]	882	switch (SuperClass::type)
	883	{
	884	case (MULTI_FILE) :
	885	{
	886	dim0.push_back(dimXid);
[657]	887	SuperClassWriter::addDimension(dimXid, domain->zoom_ni_srv);
[488]	888
[665]	889	lonid = StdString("lon").append(appendDomid);
	890	latid = StdString("lat").append(appendDomid);
[498]	891	bounds_lonid = StdString("bounds_lon").append(appendDomid);
	892	bounds_latid = StdString("bounds_lat").append(appendDomid);
[665]	893	if (domain->hasLonLat)
	894	{
[1045]	895	SuperClassWriter::addVariable(latid, typePrec, dim0);
	896	SuperClassWriter::addVariable(lonid, typePrec, dim0);
[665]	897	this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid);
	898	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid);
	899	this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid);
	900	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid);
	901	if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex);
	902	}
[498]	903	dim0.clear();
	904	if (domain->hasBounds)
	905	{
	906	dim0.push_back(dimXid);
	907	dim0.push_back(dimVertId);
[1045]	908	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0);
	909	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0);
[498]	910	}
	911
	912	dim0.clear();
[449]	913	dim0.push_back(dimXid);
[611]	914	if (domain->hasArea)
	915	{
[1045]	916	SuperClassWriter::addVariable(areaId, typePrec, dim0);
[614]	917	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
[611]	918	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
	919	}
	920
[498]	921	SuperClassWriter::definition_end();
[449]	922
[665]	923	if (domain->hasLonLat)
[498]	924	{
[665]	925	SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0);
	926	SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0);
	927	if (domain->hasBounds)
	928	{
	929	SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0);
	930	SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0);
	931	}
[498]	932	}
[611]	933
	934	if (domain->hasArea)
	935	SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0);
	936
[498]	937	SuperClassWriter::definition_start();
	938	break ;
	939	}
[488]	940
[498]	941	case (ONE_FILE) :
	942	{
	943	lonid = StdString("lon").append(appendDomid);
	944	latid = StdString("lat").append(appendDomid);
	945	bounds_lonid = StdString("bounds_lon").append(appendDomid);
	946	bounds_latid = StdString("bounds_lat").append(appendDomid);
	947	dim0.push_back(dimXid);
[705]	948	SuperClassWriter::addDimension(dimXid, domain->ni_glo);
[665]	949	if (domain->hasLonLat)
	950	{
[1045]	951	SuperClassWriter::addVariable(latid, typePrec, dim0);
	952	SuperClassWriter::addVariable(lonid, typePrec, dim0);
[665]	953
	954	this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid);
	955	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid);
	956	this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid);
	957	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid);
	958	if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex);
	959	}
[498]	960	dim0.clear();
[449]	961
[498]	962	if (domain->hasBounds)
	963	{
	964	dim0.push_back(dimXid);
	965	dim0.push_back(dimVertId);
[1045]	966	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0);
	967	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0);
[498]	968	}
[488]	969
[611]	970	if (domain->hasArea)
	971	{
	972	dim0.clear();
	973	dim0.push_back(dimXid);
[1045]	974	SuperClassWriter::addVariable(areaId, typePrec, dim0);
[614]	975	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
[611]	976	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
	977	}
	978
[498]	979	SuperClassWriter::definition_end();
[488]	980
[498]	981	std::vector<StdSize> start(1), startBounds(2) ;
	982	std::vector<StdSize> count(1), countBounds(2) ;
	983	if (domain->isEmpty())
	984	{
	985	start[0]=0 ;
	986	count[0]=0 ;
	987	startBounds[1]=0 ;
	988	countBounds[1]=domain->nvertex ;
	989	startBounds[0]=0 ;
	990	countBounds[0]=0 ;
	991	}
	992	else
	993	{
[705]	994	start[0]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
	995	count[0]=domain->zoom_ni_srv ;
	996	startBounds[0]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
[498]	997	startBounds[1]=0 ;
[705]	998	countBounds[0]=domain->zoom_ni_srv ;
[498]	999	countBounds[1]=domain->nvertex ;
	1000	}
[665]	1001
	1002	if (domain->hasLonLat)
[498]	1003	{
[665]	1004	SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count);
	1005	SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count);
	1006	if (domain->hasBounds)
	1007	{
	1008	SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0,&startBounds,&countBounds);
	1009	SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0,&startBounds,&countBounds);
	1010	}
[498]	1011	}
[488]	1012
[611]	1013	if (domain->hasArea)
	1014	SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0, &start, &count);
[488]	1015
[498]	1016	SuperClassWriter::definition_start();
[488]	1017
[498]	1018	break;
	1019	}
	1020	default :
	1021	ERROR("CNc4DataOutput::writeDomain(domain)",
	1022	<< "[ type = " << SuperClass::type << "]"
	1023	<< " not implemented yet !");
	1024	}
[219]	1025	}
[498]	1026	catch (CNetCdfException& e)
	1027	{
	1028	StdString msg("On writing the domain : ");
	1029	msg.append(domid); msg.append("\n");
	1030	msg.append("In the context : ");
	1031	msg.append(context->getId()); msg.append("\n");
	1032	msg.append(e.what());
	1033	ERROR("CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)", << msg);
	1034	}
[219]	1035	domain->addRelFile(this->filename);
	1036	}
	1037	//--------------------------------------------------------------
	1038
[347]	1039	void CNc4DataOutput::writeAxis_(CAxis* axis)
[219]	1040	{
[609]	1041	if (axis->IsWritten(this->filename)) return;
	1042	axis->checkAttributes();
	1043	int zoom_size_srv = axis->zoom_size_srv;
	1044	int zoom_begin_srv = axis->zoom_begin_srv;
[633]	1045	int zoom_size = (MULTI_FILE == SuperClass::type) ? zoom_size_srv
[1205]	1046	: axis->global_zoom_size_srv;
[488]	1047
[633]	1048	if ((0 == zoom_size_srv) && (MULTI_FILE == SuperClass::type)) return;
[498]	1049
[609]	1050	std::vector<StdString> dims;
[772]	1051	StdString axisid = axis->getAxisOutputName();
[705]	1052	if (isWrittenAxis(axisid)) return ;
[774]	1053	else setWrittenAxis(axisid);
[705]	1054
[1045]	1055	nc_type typePrec ;
	1056	if (axis->prec.isEmpty()) typePrec = NC_FLOAT ;
	1057	else if (axis->prec==4) typePrec = NC_FLOAT ;
	1058	else if (axis->prec==8) typePrec = NC_DOUBLE ;
	1059
[1050]	1060	if (!axis->label.isEmpty()) typePrec = NC_CHAR ;
	1061	string strId="str_len" ;
[609]	1062	try
	1063	{
	1064	SuperClassWriter::addDimension(axisid, zoom_size);
[1050]	1065	if (!axis->label.isEmpty()) SuperClassWriter::addDimension(strId, stringArrayLen);
[816]	1066	if (axis->hasValue)
	1067	{
	1068	dims.push_back(axisid);
[1050]	1069	if (!axis->label.isEmpty()) dims.push_back(strId);
[1045]	1070	SuperClassWriter::addVariable(axisid, typePrec, dims);
[219]	1071
[816]	1072	if (!axis->name.isEmpty())
	1073	SuperClassWriter::addAttribute("name", axis->name.getValue(), &axisid);
[219]	1074
[816]	1075	if (!axis->standard_name.isEmpty())
	1076	SuperClassWriter::addAttribute("standard_name", axis->standard_name.getValue(), &axisid);
[540]	1077
[816]	1078	if (!axis->long_name.isEmpty())
	1079	SuperClassWriter::addAttribute("long_name", axis->long_name.getValue(), &axisid);
[219]	1080
[816]	1081	if (!axis->unit.isEmpty())
	1082	SuperClassWriter::addAttribute("units", axis->unit.getValue(), &axisid);
[219]	1083
[816]	1084	if (!axis->positive.isEmpty())
	1085	{
	1086	SuperClassWriter::addAttribute("axis", string("Z"), &axisid);
	1087	SuperClassWriter::addAttribute("positive",
	1088	(axis->positive == CAxis::positive_attr::up) ? string("up") : string("down"),
	1089	&axisid);
	1090	}
[399]	1091
[816]	1092	StdString axisBoundsId = axisid + "_bounds";
	1093	if (!axis->bounds.isEmpty())
	1094	{
	1095	dims.push_back("axis_nbounds");
[1045]	1096	SuperClassWriter::addVariable(axisBoundsId, typePrec, dims);
[816]	1097	SuperClassWriter::addAttribute("bounds", axisBoundsId, &axisid);
	1098	}
[488]	1099
[816]	1100	SuperClassWriter::definition_end();
[1205]	1101
[816]	1102	switch (SuperClass::type)
[633]	1103	{
[816]	1104	case MULTI_FILE:
	1105	{
	1106	CArray<double,1> axis_value(zoom_size_srv);
	1107	for (int i = 0; i < zoom_size_srv; i++) axis_value(i) = axis->value_srv(i);
[1050]	1108	if (axis->label.isEmpty()) SuperClassWriter::writeData(axis_value, axisid, isCollective, 0);
[633]	1109
[1050]	1110	if (!axis->bounds.isEmpty() && axis->label.isEmpty())
[816]	1111	SuperClassWriter::writeData(axis->bound_srv, axisBoundsId, isCollective, 0);
[488]	1112
[1050]	1113	if (! axis->label.isEmpty()) SuperClassWriter::writeData(axis->label_srv, axisid, isCollective, 0);
	1114
[816]	1115	SuperClassWriter::definition_start();
	1116	break;
	1117	}
	1118	case ONE_FILE:
	1119	{
	1120	CArray<double,1> axis_value(zoom_size_srv);
	1121	axis_value = axis->value_srv;
[498]	1122
[816]	1123	std::vector<StdSize> start(1), startBounds(2) ;
	1124	std::vector<StdSize> count(1), countBounds(2) ;
[1205]	1125	start[0] = startBounds[0] = zoom_begin_srv-axis->global_zoom_begin_srv;
[816]	1126	count[0] = countBounds[0] = zoom_size_srv;
	1127	startBounds[1] = 0;
	1128	countBounds[1] = 2;
[1050]	1129	if (axis->label.isEmpty()) SuperClassWriter::writeData(axis_value, axisid, isCollective, 0, &start, &count);
[633]	1130
[1050]	1131	if (!axis->bounds.isEmpty()&& axis->label.isEmpty())
[816]	1132	SuperClassWriter::writeData(axis->bound_srv, axisBoundsId, isCollective, 0, &startBounds, &countBounds);
[609]	1133
[1050]	1134	if (! axis->label.isEmpty()) SuperClassWriter::writeData(axis->label_srv, axisid, isCollective, 0);
	1135
[816]	1136	SuperClassWriter::definition_start();
[609]	1137
[816]	1138	break;
	1139	}
	1140	default :
	1141	ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)",
	1142	<< "[ type = " << SuperClass::type << "]"
	1143	<< " not implemented yet !");
[609]	1144	}
	1145	}
	1146	}
	1147	catch (CNetCdfException& e)
	1148	{
	1149	StdString msg("On writing the axis : ");
	1150	msg.append(axisid); msg.append("\n");
	1151	msg.append("In the context : ");
	1152	CContext* context = CContext::getCurrent() ;
	1153	msg.append(context->getId()); msg.append("\n");
	1154	msg.append(e.what());
	1155	ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)", << msg);
	1156	}
	1157	axis->addRelFile(this->filename);
[391]	1158	}
[488]	1159
[887]	1160	void CNc4DataOutput::writeScalar_(CScalar* scalar)
	1161	{
	1162	if (scalar->IsWritten(this->filename)) return;
	1163	scalar->checkAttributes();
	1164	int scalarSize = 1;
	1165
	1166	StdString scalaId = scalar->getScalarOutputName();
	1167	if (isWrittenAxis(scalaId)) return ;
	1168	else setWrittenAxis(scalaId);
	1169
[1045]	1170	nc_type typePrec ;
	1171	if (scalar->prec.isEmpty()) typePrec = NC_FLOAT ;
	1172	else if (scalar->prec==4) typePrec = NC_FLOAT ;
	1173	else if (scalar->prec==8) typePrec = NC_DOUBLE ;
	1174
	1175
[887]	1176	try
	1177	{
	1178	if (!scalar->value.isEmpty())
	1179	{
	1180	// dims.push_back(scalaId);
	1181	std::vector<StdString> dims;
[1045]	1182	SuperClassWriter::addVariable(scalaId, typePrec, dims);
[887]	1183
	1184	if (!scalar->name.isEmpty())
	1185	SuperClassWriter::addAttribute("name", scalar->name.getValue(), &scalaId);
	1186
	1187	if (!scalar->standard_name.isEmpty())
	1188	SuperClassWriter::addAttribute("standard_name", scalar->standard_name.getValue(), &scalaId);
	1189
	1190	if (!scalar->long_name.isEmpty())
	1191	SuperClassWriter::addAttribute("long_name", scalar->long_name.getValue(), &scalaId);
	1192
	1193	if (!scalar->unit.isEmpty())
	1194	SuperClassWriter::addAttribute("units", scalar->unit.getValue(), &scalaId);
	1195
	1196	SuperClassWriter::definition_end();
	1197
	1198	switch (SuperClass::type)
	1199	{
	1200	case MULTI_FILE:
	1201	{
	1202	CArray<double,1> scalarValue(scalarSize);
	1203	scalarValue(0) = scalar->value;
	1204	SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0);
	1205	SuperClassWriter::definition_start();
	1206
	1207	break;
	1208	}
	1209	case ONE_FILE:
	1210	{
	1211	CArray<double,1> scalarValue(scalarSize);
	1212	scalarValue(0) = scalar->value;
	1213
	1214	std::vector<StdSize> start(1);
	1215	std::vector<StdSize> count(1);
	1216	start[0] = 0;
	1217	count[0] = 1;
	1218	SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0, &start, &count);
	1219	SuperClassWriter::definition_start();
	1220
	1221	break;
	1222	}
	1223	default :
	1224	ERROR("CNc4DataOutput::writeAxis_(CAxis* scalar)",
	1225	<< "[ type = " << SuperClass::type << "]"
	1226	<< " not implemented yet !");
	1227	}
	1228	}
	1229	}
	1230	catch (CNetCdfException& e)
	1231	{
	1232	StdString msg("On writing the scalar : ");
	1233	msg.append(scalaId); msg.append("\n");
	1234	msg.append("In the context : ");
	1235	CContext* context = CContext::getCurrent() ;
	1236	msg.append(context->getId()); msg.append("\n");
	1237	msg.append(e.what());
	1238	ERROR("CNc4DataOutput::writeScalar_(CScalar* scalar)", << msg);
	1239	}
	1240	scalar->addRelFile(this->filename);
	1241	}
	1242
[676]	1243	//--------------------------------------------------------------
	1244
	1245	void CNc4DataOutput::writeGridCompressed_(CGrid* grid)
	1246	{
	1247	if (grid->isScalarGrid() \|\| grid->isWrittenCompressed(this->filename)) return;
	1248
	1249	try
	1250	{
[887]	1251	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
[676]	1252	std::vector<StdString> domainList = grid->getDomainList();
	1253	std::vector<StdString> axisList = grid->getAxisList();
[887]	1254	std::vector<StdString> scalarList = grid->getScalarList();
	1255	int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0;
[676]	1256
	1257	std::vector<StdString> dims;
	1258
	1259	if (grid->isCompressible())
	1260	{
	1261	StdString varId = grid->getId() + "_points";
	1262
	1263	int nbIndexes = (SuperClass::type == MULTI_FILE) ? grid->getNumberWrittenIndexes() : grid->getTotalNumberWrittenIndexes();
	1264	SuperClassWriter::addDimension(varId, nbIndexes);
	1265
	1266	dims.push_back(varId);
	1267	SuperClassWriter::addVariable(varId, NC_INT, dims);
	1268
	1269	StdOStringStream compress;
	1270	for (int i = numElement - 1; i >= 0; --i)
	1271	{
[887]	1272	if (2 == axisDomainOrder(i))
[676]	1273	{
	1274	CDomain* domain = CDomain::get(domainList[domainList.size() - idxDomain - 1]);
[772]	1275	StdString domId = domain->getDomainOutputName();
[676]	1276	StdString appendDomId = singleDomain ? "" : "_" + domId;
	1277
	1278	switch (domain->type)
	1279	{
	1280	case CDomain::type_attr::curvilinear:
	1281	compress << "y" << appendDomId << " x" << appendDomId;
	1282	break;
	1283	case CDomain::type_attr::rectilinear:
	1284	compress << "lat" << appendDomId << " lon" << appendDomId;
	1285	break;
	1286	case CDomain::type_attr::unstructured:
	1287	compress << "cell" << appendDomId;
	1288	break;
	1289	}
	1290	++idxDomain;
	1291	}
[887]	1292	else if (1 == axisDomainOrder(i))
[676]	1293	{
	1294	CAxis* axis = CAxis::get(axisList[axisList.size() - idxAxis - 1]);
[772]	1295	compress << axis->getAxisOutputName();
[676]	1296	++idxAxis;
	1297	}
[887]	1298	else
	1299	{
	1300	CScalar* scalar = CScalar::get(scalarList[scalarList.size() - idxScalar - 1]);
	1301	compress << scalar->getScalarOutputName();
	1302	++idxScalar;
	1303	}
[676]	1304
	1305	if (i != 0) compress << ' ';
	1306	}
	1307	SuperClassWriter::addAttribute("compress", compress.str(), &varId);
	1308
	1309	grid->computeCompressedIndex();
	1310
	1311	CArray<int, 1> indexes(grid->getNumberWrittenIndexes());
	1312	std::map<int, CArray<size_t, 1> >::const_iterator it;
	1313	for (it = grid->outIndexFromClient.begin(); it != grid->outIndexFromClient.end(); ++it)
	1314	{
	1315	const CArray<size_t, 1> compressedIndexes = grid->compressedOutIndexFromClient[it->first];
	1316	for (int i = 0; i < it->second.numElements(); i++)
	1317	indexes(compressedIndexes(i)) = it->second(i);
	1318	}
	1319
	1320	switch (SuperClass::type)
	1321	{
	1322	case (MULTI_FILE):
	1323	{
	1324	SuperClassWriter::writeData(indexes, varId, isCollective, 0);
	1325	break;
	1326	}
	1327	case (ONE_FILE):
	1328	{
	1329	if (grid->doGridHaveDataDistributed())
	1330	grid->getDistributionServer()->computeGlobalIndex(indexes);
	1331
	1332	std::vector<StdSize> start, count;
	1333	start.push_back(grid->getOffsetWrittenIndexes());
	1334	count.push_back(grid->getNumberWrittenIndexes());
	1335
	1336	SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count);
	1337	break;
	1338	}
	1339	}
	1340	}
	1341	else
	1342	{
	1343	for (int i = 0; i < numElement; ++i)
	1344	{
	1345	StdString varId, compress;
	1346	CArray<int, 1> indexes;
	1347	bool isDistributed;
	1348	StdSize nbIndexes, totalNbIndexes, offset;
	1349	int firstGlobalIndex;
	1350
[887]	1351	if (2 == axisDomainOrder(i))
[676]	1352	{
	1353	CDomain* domain = CDomain::get(domainList[idxDomain]);
[774]	1354	StdString domId = domain->getDomainOutputName();
	1355
[676]	1356	if (!domain->isCompressible()
	1357	\|\| domain->type == CDomain::type_attr::unstructured
[774]	1358	\|\| domain->isWrittenCompressed(this->filename)
	1359	\|\| isWrittenCompressedDomain(domId))
[676]	1360	continue;
	1361
	1362	StdString appendDomId = singleDomain ? "" : "_" + domId;
	1363
	1364	varId = domId + "_points";
	1365	switch (domain->type)
	1366	{
	1367	case CDomain::type_attr::curvilinear:
	1368	compress = "y" + appendDomId + " x" + appendDomId;
	1369	break;
	1370	case CDomain::type_attr::rectilinear:
	1371	compress = "lat" + appendDomId + " lon" + appendDomId;
	1372	break;
	1373	}
	1374
	1375	const std::vector<int>& indexesToWrite = domain->getIndexesToWrite();
	1376	indexes.resize(indexesToWrite.size());
	1377	for (int n = 0; n < indexes.numElements(); ++n)
	1378	indexes(n) = indexesToWrite[n];
	1379
	1380	isDistributed = domain->isDistributed();
	1381	nbIndexes = domain->getNumberWrittenIndexes();
	1382	totalNbIndexes = domain->getTotalNumberWrittenIndexes();
	1383	offset = domain->getOffsetWrittenIndexes();
	1384	firstGlobalIndex = domain->ibegin + domain->jbegin * domain->ni_glo;
	1385
	1386	domain->addRelFileCompressed(this->filename);
[774]	1387	setWrittenCompressedDomain(domId);
[676]	1388	++idxDomain;
	1389	}
[887]	1390	else if (1 == axisDomainOrder(i))
[676]	1391	{
	1392	CAxis* axis = CAxis::get(axisList[idxAxis]);
[774]	1393	StdString axisId = axis->getAxisOutputName();
	1394
	1395	if (!axis->isCompressible()
	1396	\|\| axis->isWrittenCompressed(this->filename)
	1397	\|\| isWrittenCompressedAxis(axisId))
[676]	1398	continue;
	1399
	1400	varId = axisId + "_points";
	1401	compress = axisId;
	1402
	1403	const std::vector<int>& indexesToWrite = axis->getIndexesToWrite();
	1404	indexes.resize(indexesToWrite.size());
	1405	for (int n = 0; n < indexes.numElements(); ++n)
	1406	indexes(n) = indexesToWrite[n];
	1407
	1408	isDistributed = axis->isDistributed();
	1409	nbIndexes = axis->getNumberWrittenIndexes();
	1410	totalNbIndexes = axis->getTotalNumberWrittenIndexes();
	1411	offset = axis->getOffsetWrittenIndexes();
	1412	firstGlobalIndex = axis->begin;
	1413
	1414	axis->addRelFileCompressed(this->filename);
[774]	1415	setWrittenCompressedAxis(axisId);
[676]	1416	++idxAxis;
	1417	}
[887]	1418	else
	1419	{
	1420	}
[676]	1421
	1422	if (!varId.empty())
	1423	{
	1424	SuperClassWriter::addDimension(varId, (SuperClass::type == MULTI_FILE) ? nbIndexes : totalNbIndexes);
	1425
	1426	dims.clear();
	1427	dims.push_back(varId);
	1428	SuperClassWriter::addVariable(varId, NC_INT, dims);
	1429
	1430	SuperClassWriter::addAttribute("compress", compress, &varId);
	1431
	1432	switch (SuperClass::type)
	1433	{
	1434	case (MULTI_FILE):
	1435	{
	1436	indexes -= firstGlobalIndex;
	1437	SuperClassWriter::writeData(indexes, varId, isCollective, 0);
	1438	break;
	1439	}
	1440	case (ONE_FILE):
	1441	{
	1442	std::vector<StdSize> start, count;
	1443	start.push_back(offset);
	1444	count.push_back(nbIndexes);
	1445
	1446	SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count);
	1447	break;
	1448	}
	1449	}
	1450	}
	1451	}
	1452
	1453	if (!dims.empty())
	1454	grid->computeCompressedIndex();
	1455	}
	1456
	1457	grid->addRelFileCompressed(this->filename);
	1458	}
	1459	catch (CNetCdfException& e)
	1460	{
	1461	StdString msg("On writing compressed grid : ");
	1462	msg.append(grid->getId()); msg.append("\n");
	1463	msg.append("In the context : ");
	1464	CContext* context = CContext::getCurrent();
	1465	msg.append(context->getId()); msg.append("\n");
	1466	msg.append(e.what());
	1467	ERROR("CNc4DataOutput::writeGridCompressed_(CGrid* grid)", << msg);
	1468	}
	1469	}
	1470
	1471	//--------------------------------------------------------------
	1472
[391]	1473	void CNc4DataOutput::writeTimeDimension_(void)
	1474	{
[498]	1475	try
	1476	{
[802]	1477	SuperClassWriter::addDimension(getTimeCounterName());
[498]	1478	}
	1479	catch (CNetCdfException& e)
	1480	{
[614]	1481	StdString msg("On writing time dimension : time_couter\n");
[498]	1482	msg.append("In the context : ");
	1483	CContext* context = CContext::getCurrent() ;
	1484	msg.append(context->getId()); msg.append("\n");
	1485	msg.append(e.what());
	1486	ERROR("CNc4DataOutput::writeTimeDimension_(void)", << msg);
	1487	}
[391]	1488	}
[676]	1489
[219]	1490	//--------------------------------------------------------------
	1491
[347]	1492	void CNc4DataOutput::writeField_(CField* field)
[219]	1493	{
[993]	1494	CContext* context = CContext::getCurrent() ;
	1495	CContextServer* server=context->server ;
[300]	1496
[993]	1497	std::vector<StdString> dims, coodinates;
	1498	CGrid* grid = field->grid;
	1499	if (!grid->doGridHaveDataToWrite())
[567]	1500	if (SuperClass::type==MULTI_FILE) return ;
[488]	1501
[993]	1502	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
	1503	int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0;
	1504	std::vector<StdString> domainList = grid->getDomainList();
	1505	std::vector<StdString> axisList = grid->getAxisList();
[999]	1506	std::vector<StdString> scalarList = grid->getScalarList();
[219]	1507
[993]	1508	StdString timeid = getTimeCounterName();
	1509	StdString dimXid,dimYid;
	1510	std::deque<StdString> dimIdList, dimCoordList;
	1511	bool hasArea = false;
	1512	StdString cellMeasures = "area:";
	1513	bool compressedOutput = !field->indexed_output.isEmpty() && field->indexed_output;
[676]	1514
[993]	1515	for (int i = 0; i < numElement; ++i)
	1516	{
	1517	if (2 == axisDomainOrder(i))
	1518	{
[999]	1519	CDomain* domain = CDomain::get(domainList[idxDomain]);
[993]	1520	StdString domId = domain->getDomainOutputName();
	1521	StdString appendDomId = singleDomain ? "" : "_" + domId ;
[676]	1522
[993]	1523	if (compressedOutput && domain->isCompressible() && domain->type != CDomain::type_attr::unstructured)
[879]	1524	{
[993]	1525	dimIdList.push_back(domId + "_points");
	1526	field->setUseCompressedOutput();
[879]	1527	}
[993]	1528
	1529	switch (domain->type)
[879]	1530	{
[993]	1531	case CDomain::type_attr::curvilinear:
	1532	if (!compressedOutput \|\| !domain->isCompressible())
	1533	{
	1534	dimXid = StdString("x").append(appendDomId);
	1535	dimIdList.push_back(dimXid);
	1536	dimYid = StdString("y").append(appendDomId);
	1537	dimIdList.push_back(dimYid);
	1538	}
	1539	dimCoordList.push_back(StdString("nav_lon").append(appendDomId));
	1540	dimCoordList.push_back(StdString("nav_lat").append(appendDomId));
	1541	break ;
	1542	case CDomain::type_attr::rectilinear:
	1543	if (!compressedOutput \|\| !domain->isCompressible())
	1544	{
	1545	dimXid = StdString("lon").append(appendDomId);
	1546	dimIdList.push_back(dimXid);
	1547	dimYid = StdString("lat").append(appendDomId);
	1548	dimIdList.push_back(dimYid);
	1549	}
	1550	break ;
	1551	case CDomain::type_attr::unstructured:
	1552	{
	1553	if (SuperClassWriter::useCFConvention)
	1554	{
	1555	dimXid = StdString("cell").append(appendDomId);
	1556	dimIdList.push_back(dimXid);
	1557	dimCoordList.push_back(StdString("lon").append(appendDomId));
	1558	dimCoordList.push_back(StdString("lat").append(appendDomId));
	1559	}
	1560	else
	1561	{
	1562	StdString domainName = domain->name;
	1563	if (domain->nvertex == 1)
	1564	{
	1565	dimXid = "n" + domainName + "_node";
	1566	dimIdList.push_back(dimXid);
	1567	dimCoordList.push_back(StdString(domainName + "_node_x"));
	1568	dimCoordList.push_back(StdString(domainName + "_node_y"));
	1569	}
	1570	else if (domain->nvertex == 2)
	1571	{
	1572	dimXid = "n" + domainName + "_edge";
	1573	dimIdList.push_back(dimXid);
	1574	dimCoordList.push_back(StdString(domainName + "_edge_x"));
	1575	dimCoordList.push_back(StdString(domainName + "_edge_y"));
	1576	}
	1577	else
	1578	{
	1579	dimXid = "n" + domainName + "_face";
	1580	dimIdList.push_back(dimXid);
	1581	dimCoordList.push_back(StdString(domainName + "_face_x"));
	1582	dimCoordList.push_back(StdString(domainName + "_face_y"));
	1583	}
	1584	} // ugrid convention
	1585	} // case unstructured domain
[879]	1586	}
[993]	1587
	1588	if (domain->hasArea)
[879]	1589	{
[993]	1590	hasArea = true;
	1591	cellMeasures += " area" + appendDomId;
[879]	1592	}
[993]	1593	++idxDomain;
	1594	}
	1595	else if (1 == axisDomainOrder(i))
	1596	{
	1597	CAxis* axis = CAxis::get(axisList[idxAxis]);
	1598	StdString axisId = axis->getAxisOutputName();
[878]	1599
[993]	1600	if (compressedOutput && axis->isCompressible())
	1601	{
	1602	dimIdList.push_back(axisId + "_points");
	1603	field->setUseCompressedOutput();
	1604	}
	1605	else
	1606	dimIdList.push_back(axisId);
[676]	1607
[993]	1608	dimCoordList.push_back(axisId);
	1609	++idxAxis;
	1610	}
	1611	else // scalar
	1612	{
[887]	1613	/* Do nothing here */
[993]	1614	}
	1615	}
[488]	1616
[993]	1617	StdString fieldid = field->getFieldOutputName();
[219]	1618
[993]	1619	nc_type type ;
	1620	if (field->prec.isEmpty()) type = NC_FLOAT ;
	1621	else
	1622	{
	1623	if (field->prec==2) type = NC_SHORT ;
	1624	else if (field->prec==4) type = NC_FLOAT ;
	1625	else if (field->prec==8) type = NC_DOUBLE ;
	1626	}
[488]	1627
[993]	1628	bool wtime = !(!field->operation.isEmpty() && field->getOperationTimeType() == func::CFunctor::once);
[488]	1629
[993]	1630	if (wtime)
	1631	{
[1096]	1632	if (field->hasTimeInstant && hasTimeInstant) coodinates.push_back(string("time_instant"));
	1633	else if (field->hasTimeCentered && hasTimeCentered) coodinates.push_back(string("time_centered"));
[993]	1634	dims.push_back(timeid);
	1635	}
[219]	1636
[993]	1637	if (compressedOutput && grid->isCompressible())
	1638	{
	1639	dims.push_back(grid->getId() + "_points");
	1640	field->setUseCompressedOutput();
	1641	}
	1642	else
	1643	{
	1644	while (!dimIdList.empty())
	1645	{
	1646	dims.push_back(dimIdList.back());
	1647	dimIdList.pop_back();
	1648	}
	1649	}
[219]	1650
[993]	1651	while (!dimCoordList.empty())
	1652	{
	1653	coodinates.push_back(dimCoordList.back());
	1654	dimCoordList.pop_back();
	1655	}
[219]	1656
[993]	1657	try
	1658	{
[498]	1659	SuperClassWriter::addVariable(fieldid, type, dims);
[488]	1660
[498]	1661	if (!field->standard_name.isEmpty())
	1662	SuperClassWriter::addAttribute
	1663	("standard_name", field->standard_name.getValue(), &fieldid);
[219]	1664
[498]	1665	if (!field->long_name.isEmpty())
	1666	SuperClassWriter::addAttribute
	1667	("long_name", field->long_name.getValue(), &fieldid);
[219]	1668
[498]	1669	if (!field->unit.isEmpty())
	1670	SuperClassWriter::addAttribute
	1671	("units", field->unit.getValue(), &fieldid);
[463]	1672
[993]	1673	// Ugrid field attributes "mesh" and "location"
	1674	if (!SuperClassWriter::useCFConvention)
	1675	{
[999]	1676	if (!domainList.empty())
	1677	{
	1678	CDomain* domain = CDomain::get(domainList[0]); // Suppose that we have only domain
	1679	StdString mesh = domain->name;
	1680	SuperClassWriter::addAttribute("mesh", mesh, &fieldid);
	1681	StdString location;
	1682	if (domain->nvertex == 1)
	1683	location = "node";
	1684	else if (domain->nvertex == 2)
	1685	location = "edge";
	1686	else if (domain->nvertex > 2)
	1687	location = "face";
	1688	SuperClassWriter::addAttribute("location", location, &fieldid);
	1689	}
	1690
[993]	1691	}
	1692
	1693	if (!field->valid_min.isEmpty())
[498]	1694	SuperClassWriter::addAttribute
	1695	("valid_min", field->valid_min.getValue(), &fieldid);
[463]	1696
[498]	1697	if (!field->valid_max.isEmpty())
	1698	SuperClassWriter::addAttribute
	1699	("valid_max", field->valid_max.getValue(), &fieldid);
[464]	1700
[498]	1701	if (!field->scale_factor.isEmpty())
	1702	SuperClassWriter::addAttribute
	1703	("scale_factor", field->scale_factor.getValue(), &fieldid);
[464]	1704
[498]	1705	if (!field->add_offset.isEmpty())
	1706	SuperClassWriter::addAttribute
	1707	("add_offset", field->add_offset.getValue(), &fieldid);
[488]	1708
[498]	1709	SuperClassWriter::addAttribute
	1710	("online_operation", field->operation.getValue(), &fieldid);
[472]	1711
[498]	1712	// write child variables as attributes
[488]	1713
	1714
[498]	1715	vector<CVariable*> listVars = field->getAllVariables() ;
	1716	for (vector<CVariable>::iterator it = listVars.begin() ;it != listVars.end(); it++) writeAttribute_(it, fieldid) ;
[472]	1717
[990]	1718	bool alreadyAddCellMethod = false;
	1719	StdString cellMethodsPrefix(""), cellMethodsSuffix("");
	1720	if (!field->cell_methods.isEmpty())
	1721	{
	1722	StdString cellMethodString = field->cell_methods;
	1723	if (field->cell_methods_mode.isEmpty() \|\|
	1724	(CField::cell_methods_mode_attr::overwrite == field->cell_methods_mode))
	1725	{
	1726	SuperClassWriter::addAttribute("cell_methods", cellMethodString, &fieldid);
	1727	alreadyAddCellMethod = true;
	1728	}
	1729	else
	1730	{
	1731	switch (field->cell_methods_mode)
	1732	{
	1733	case (CField::cell_methods_mode_attr::prefix):
	1734	cellMethodsPrefix = cellMethodString;
	1735	cellMethodsPrefix += " ";
	1736	break;
	1737	case (CField::cell_methods_mode_attr::suffix):
	1738	cellMethodsSuffix = " ";
	1739	cellMethodsSuffix += cellMethodString;
	1740	break;
	1741	case (CField::cell_methods_mode_attr::none):
	1742	break;
	1743	default:
	1744	break;
	1745	}
	1746	}
	1747	}
[488]	1748
[990]	1749
[498]	1750	if (wtime)
	1751	{
[614]	1752	CDuration freqOp = field->freq_op.getValue();
	1753	freqOp.solveTimeStep(*context->calendar);
	1754	StdString freqOpStr = freqOp.toStringUDUnits();
[612]	1755	SuperClassWriter::addAttribute("interval_operation", freqOpStr, &fieldid);
[437]	1756
[614]	1757	CDuration freqOut = field->getRelFile()->output_freq.getValue();
	1758	freqOut.solveTimeStep(*context->calendar);
	1759	SuperClassWriter::addAttribute("interval_write", freqOut.toStringUDUnits(), &fieldid);
[612]	1760
[990]	1761	StdString cellMethods(cellMethodsPrefix + "time: ");
[612]	1762	if (field->operation.getValue() == "instant") cellMethods += "point";
	1763	else if (field->operation.getValue() == "average") cellMethods += "mean";
	1764	else if (field->operation.getValue() == "accumulate") cellMethods += "sum";
	1765	else cellMethods += field->operation;
[614]	1766	if (freqOp.resolve(context->calendar) != freqOut.resolve(context->calendar))
	1767	cellMethods += " (interval: " + freqOpStr + ")";
[990]	1768	cellMethods += cellMethodsSuffix;
	1769	if (!alreadyAddCellMethod)
	1770	SuperClassWriter::addAttribute("cell_methods", cellMethods, &fieldid);
[498]	1771	}
[488]	1772
[611]	1773	if (hasArea)
	1774	SuperClassWriter::addAttribute("cell_measures", cellMeasures, &fieldid);
	1775
[498]	1776	if (!field->default_value.isEmpty())
	1777	{
	1778	double default_value = field->default_value.getValue();
	1779	float fdefault_value = (float)default_value;
	1780	if (type == NC_DOUBLE)
	1781	SuperClassWriter::setDefaultValue(fieldid, &default_value);
	1782	else
	1783	SuperClassWriter::setDefaultValue(fieldid, &fdefault_value);
	1784	}
	1785	else
[517]	1786	SuperClassWriter::setDefaultValue(fieldid, (double*)NULL);
[219]	1787
[606]	1788	if (field->compression_level.isEmpty())
	1789	field->compression_level = field->file->compression_level.isEmpty() ? 0 : field->file->compression_level;
	1790	SuperClassWriter::setCompressionLevel(fieldid, field->compression_level);
	1791
[878]	1792	{ // Ecriture des coordonnes
[488]	1793
[498]	1794	StdString coordstr; //boost::algorithm::join(coodinates, " ")
	1795	std::vector<StdString>::iterator
	1796	itc = coodinates.begin(), endc = coodinates.end();
[488]	1797
[498]	1798	for (; itc!= endc; itc++)
	1799	{
	1800	StdString & coord = *itc;
	1801	if (itc+1 != endc)
	1802	coordstr.append(coord).append(" ");
	1803	else coordstr.append(coord);
	1804	}
[219]	1805
[498]	1806	SuperClassWriter::addAttribute("coordinates", coordstr, &fieldid);
[219]	1807
[498]	1808	}
[219]	1809	}
[498]	1810	catch (CNetCdfException& e)
	1811	{
	1812	StdString msg("On writing field : ");
	1813	msg.append(fieldid); msg.append("\n");
	1814	msg.append("In the context : ");
	1815	msg.append(context->getId()); msg.append("\n");
	1816	msg.append(e.what());
	1817	ERROR("CNc4DataOutput::writeField_(CField* field)", << msg);
	1818	}
[879]	1819	} // writeField_()
[219]	1820
	1821	//--------------------------------------------------------------
	1822
[347]	1823	void CNc4DataOutput::writeFile_ (CFile* file)
[219]	1824	{
[773]	1825	StdString filename = file->getFileOutputName();
[219]	1826	StdString description = (!file->description.isEmpty())
	1827	? file->description.getValue()
[335]	1828	: StdString("Created by xios");
[609]	1829
	1830	singleDomain = (file->nbDomains == 1);
[1205]	1831
	1832	StdString conv_str ;
	1833	if (file->convention_str.isEmpty())
	1834	{
	1835	if (SuperClassWriter::useCFConvention) conv_str="CF-1.6" ;
	1836	else conv_str="UGRID" ;
	1837	}
	1838	else conv_str=file->convention_str ;
	1839
[1160]	1840	try
[1156]	1841	{
[1205]	1842	this->writeFileAttributes(filename, description,
	1843	conv_str,
	1844	StdString("An IPSL model"),
	1845	this->getTimeStamp());
[1157]	1846
[701]	1847	if (!appendMode)
	1848	SuperClassWriter::addDimension("axis_nbounds", 2);
[498]	1849	}
	1850	catch (CNetCdfException& e)
	1851	{
	1852	StdString msg("On writing file : ");
	1853	msg.append(filename); msg.append("\n");
	1854	msg.append("In the context : ");
	1855	CContext* context = CContext::getCurrent() ;
	1856	msg.append(context->getId()); msg.append("\n");
	1857	msg.append(e.what());
	1858	ERROR("CNc4DataOutput::writeFile_ (CFile* file)", << msg);
	1859	}
[219]	1860	}
[488]	1861
[472]	1862	void CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)
	1863	{
[773]	1864	StdString name = var->getVariableOutputName();
[488]	1865
[498]	1866	try
	1867	{
[527]	1868	if (var->type.getValue() == CVariable::type_attr::t_int \|\| var->type.getValue() == CVariable::type_attr::t_int32)
	1869	addAttribute(name, var->getData<int>(), &fieldId);
	1870	else if (var->type.getValue() == CVariable::type_attr::t_int16)
	1871	addAttribute(name, var->getData<short int>(), &fieldId);
	1872	else if (var->type.getValue() == CVariable::type_attr::t_float)
	1873	addAttribute(name, var->getData<float>(), &fieldId);
	1874	else if (var->type.getValue() == CVariable::type_attr::t_double)
	1875	addAttribute(name, var->getData<double>(), &fieldId);
	1876	else if (var->type.getValue() == CVariable::type_attr::t_string)
	1877	addAttribute(name, var->getData<string>(), &fieldId);
	1878	else
	1879	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)",
	1880	<< "Unsupported variable of type " << var->type.getStringValue());
[498]	1881	}
	1882	catch (CNetCdfException& e)
	1883	{
	1884	StdString msg("On writing attributes of variable with name : ");
	1885	msg.append(name); msg.append("in the field "); msg.append(fieldId); msg.append("\n");
	1886	msg.append("In the context : ");
	1887	CContext* context = CContext::getCurrent() ;
	1888	msg.append(context->getId()); msg.append("\n");
	1889	msg.append(e.what());
	1890	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", << msg);
	1891	}
[472]	1892	}
[488]	1893
[472]	1894	void CNc4DataOutput::writeAttribute_ (CVariable* var)
	1895	{
[773]	1896	StdString name = var->getVariableOutputName();
	1897
[498]	1898	try
	1899	{
[527]	1900	if (var->type.getValue() == CVariable::type_attr::t_int \|\| var->type.getValue() == CVariable::type_attr::t_int32)
	1901	addAttribute(name, var->getData<int>());
	1902	else if (var->type.getValue() == CVariable::type_attr::t_int16)
	1903	addAttribute(name, var->getData<short int>());
	1904	else if (var->type.getValue() == CVariable::type_attr::t_float)
	1905	addAttribute(name, var->getData<float>());
	1906	else if (var->type.getValue() == CVariable::type_attr::t_double)
	1907	addAttribute(name, var->getData<double>());
	1908	else if (var->type.getValue() == CVariable::type_attr::t_string)
	1909	addAttribute(name, var->getData<string>());
	1910	else
	1911	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)",
	1912	<< "Unsupported variable of type " << var->type.getStringValue());
[498]	1913	}
	1914	catch (CNetCdfException& e)
	1915	{
	1916	StdString msg("On writing attributes of variable with name : ");
	1917	msg.append(name); msg.append("\n");
	1918	msg.append("In the context : ");
	1919	CContext* context = CContext::getCurrent() ;
	1920	msg.append(context->getId()); msg.append("\n");
	1921	msg.append(e.what());
	1922	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", << msg);
	1923	}
[488]	1924	}
	1925
[321]	1926	void CNc4DataOutput::syncFile_ (void)
	1927	{
[498]	1928	try
	1929	{
	1930	SuperClassWriter::sync() ;
	1931	}
	1932	catch (CNetCdfException& e)
	1933	{
	1934	StdString msg("On synchronizing the write among processes");
	1935	msg.append("In the context : ");
	1936	CContext* context = CContext::getCurrent() ;
	1937	msg.append(context->getId()); msg.append("\n");
	1938	msg.append(e.what());
	1939	ERROR("CNc4DataOutput::syncFile_ (void)", << msg);
	1940	}
[321]	1941	}
[219]	1942
[286]	1943	void CNc4DataOutput::closeFile_ (void)
	1944	{
[498]	1945	try
	1946	{
	1947	SuperClassWriter::close() ;
	1948	}
	1949	catch (CNetCdfException& e)
	1950	{
	1951	StdString msg("On closing file");
	1952	msg.append("In the context : ");
	1953	CContext* context = CContext::getCurrent() ;
	1954	msg.append(context->getId()); msg.append("\n");
	1955	msg.append(e.what());
	1956	ERROR("CNc4DataOutput::syncFile_ (void)", << msg);
	1957	}
	1958
[286]	1959	}
	1960
[219]	1961	//---------------------------------------------------------------
	1962
	1963	StdString CNc4DataOutput::getTimeStamp(void) const
	1964	{
	1965	const int buffer_size = 100;
	1966	time_t rawtime;
	1967	struct tm * timeinfo = NULL;
	1968	char buffer [buffer_size];
[1046]	1969	StdString formatStr;
	1970	if (file->time_stamp_format.isEmpty()) formatStr="%Y-%b-%d %H:%M:%S %Z" ;
	1971	else formatStr=file->time_stamp_format;
[219]	1972
[1046]	1973	// time ( &rawtime );
	1974	// timeinfo = localtime ( &rawtime );
[219]	1975	time ( &rawtime );
[1046]	1976	timeinfo = gmtime ( &rawtime );
	1977	strftime (buffer, buffer_size, formatStr.c_str(), timeinfo);
[219]	1978
	1979	return (StdString(buffer));
	1980	}
[488]	1981
[219]	1982	//---------------------------------------------------------------
[488]	1983
[347]	1984	void CNc4DataOutput::writeFieldData_ (CField* field)
[219]	1985	{
[707]	1986	CContext* context = CContext::getCurrent();
	1987	CContextServer* server = context->server;
	1988	CGrid* grid = field->grid;
[300]	1989
[1205]	1990	if (field->getNStep()<1)
	1991	{
	1992	return;
	1993	}
[952]	1994
[707]	1995	if (!grid->doGridHaveDataToWrite())
[1205]	1996	if (SuperClass::type == MULTI_FILE \|\| !isCollective)
	1997	{
	1998	return;
	1999	}
[488]	2000
[1205]	2001
[770]	2002	StdString fieldid = field->getFieldOutputName();
[286]	2003
[707]	2004	StdOStringStream oss;
	2005	string timeAxisId;
[1096]	2006	if (field->hasTimeInstant) timeAxisId = "time_instant";
	2007	else if (field->hasTimeCentered) timeAxisId = "time_centered";
[488]	2008
[802]	2009	StdString timeBoundId = getTimeCounterName() + "_bounds";
[449]	2010
[707]	2011	StdString timeAxisBoundId;
[1096]	2012	if (field->hasTimeInstant) timeAxisBoundId = "time_instant_bounds";
	2013	else if (field->hasTimeCentered) timeAxisBoundId = "time_centered_bounds";
[488]	2014
[707]	2015	if (!field->wasWritten())
	2016	{
[1012]	2017	if (appendMode && field->file->record_offset.isEmpty() &&
	2018	field->getOperationTimeType() != func::CFunctor::once)
[707]	2019	{
[1046]	2020	double factorUnit;
	2021	if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days)
	2022	factorUnit=context->getCalendar()->getDayLengthInSeconds() ;
	2023	else factorUnit=1 ;
[1044]	2024	field->resetNStep(getRecordFromTime(field->last_Write_srv,factorUnit) + 1);
[707]	2025	}
[488]	2026
[707]	2027	field->setWritten();
	2028	}
[488]	2029
	2030
[707]	2031	CArray<double,1> time_data(1);
	2032	CArray<double,1> time_data_bound(2);
	2033	CArray<double,1> time_counter(1);
	2034	CArray<double,1> time_counter_bound(2);
	2035
	2036	bool wtime = (field->getOperationTimeType() != func::CFunctor::once);
[1096]	2037	bool wtimeCounter =false ;
	2038	bool wtimeData =false ;
	2039
[707]	2040
[444]	2041	if (wtime)
	2042	{
[1059]	2043
[692]	2044	Time lastWrite = field->last_Write_srv;
	2045	Time lastLastWrite = field->lastlast_Write_srv;
	2046
[1096]	2047
	2048	if (field->hasTimeInstant)
	2049	{
	2050	time_data(0) = time_data_bound(1) = lastWrite;
[692]	2051	time_data_bound(0) = time_data_bound(1) = lastWrite;
[1096]	2052	if (timeCounterType==instant)
	2053	{
	2054	time_counter(0) = time_data(0);
	2055	time_counter_bound(0) = time_data_bound(0);
	2056	time_counter_bound(1) = time_data_bound(1);
	2057	wtimeCounter=true ;
	2058	}
	2059	if (hasTimeInstant) wtimeData=true ;
	2060	}
	2061	else if (field->hasTimeCentered)
[488]	2062	{
[1096]	2063	time_data(0) = (lastWrite + lastLastWrite) / 2;
[692]	2064	time_data_bound(0) = lastLastWrite;
	2065	time_data_bound(1) = lastWrite;
[1096]	2066	if (timeCounterType==centered)
	2067	{
	2068	time_counter(0) = time_data(0) ;
	2069	time_counter_bound(0) = time_data_bound(0) ;
	2070	time_counter_bound(1) = time_data_bound(1) ;
	2071	wtimeCounter=true ;
	2072	}
	2073	if (hasTimeCentered) wtimeData=true ;
[488]	2074	}
	2075
[1096]	2076	if (timeCounterType==record)
	2077	{
[692]	2078	time_counter(0) = field->getNStep() - 1;
[1096]	2079	time_counter_bound(0) = time_counter_bound(1) = field->getNStep() - 1;
	2080	wtimeCounter=true ;
[692]	2081	}
[1044]	2082
	2083	if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days)
	2084	{
	2085	double secByDay=context->getCalendar()->getDayLengthInSeconds() ;
	2086	time_data/=secByDay;
	2087	time_data_bound/=secByDay;
	2088	time_counter/=secByDay;
	2089	time_counter_bound/=secByDay;
	2090	}
[692]	2091	}
	2092
[707]	2093	bool isRoot = (server->intraCommRank == 0);
[488]	2094
[464]	2095	if (!field->scale_factor.isEmpty() \|\| !field->add_offset.isEmpty())
	2096	{
[707]	2097	double scaleFactor = 1.0;
	2098	double addOffset = 0.0;
	2099	if (!field->scale_factor.isEmpty()) scaleFactor = field->scale_factor;
	2100	if (!field->add_offset.isEmpty()) addOffset = field->add_offset;
	2101	field->scaleFactorAddOffset(scaleFactor, addOffset);
[464]	2102	}
[488]	2103
[498]	2104	try
[219]	2105	{
[676]	2106	size_t writtenSize;
	2107	if (field->getUseCompressedOutput())
	2108	writtenSize = grid->getNumberWrittenIndexes();
	2109	else
	2110	writtenSize = grid->getWrittenDataSize();
	2111
	2112	CArray<double,1> fieldData(writtenSize);
[567]	2113	if (!field->default_value.isEmpty()) fieldData = field->default_value;
[676]	2114
	2115	if (field->getUseCompressedOutput())
	2116	field->outputCompressedField(fieldData);
	2117	else
	2118	field->outputField(fieldData);
	2119
[707]	2120	if (!field->prec.isEmpty() && field->prec == 2) fieldData = round(fieldData);
[567]	2121
	2122	switch (SuperClass::type)
[498]	2123	{
[567]	2124	case (MULTI_FILE) :
	2125	{
[1205]	2126	CTimer::get("Files : writing data").resume();
[692]	2127	SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1);
[1205]	2128	CTimer::get("Files : writing data").suspend();
[567]	2129	if (wtime)
	2130	{
[1205]	2131	CTimer::get("Files : writing time axis").resume();
[1096]	2132	if ( wtimeData)
[692]	2133	{
[1205]	2134	// SuperClassWriter::writeData(time_data, timeAxisId, isCollective, field->getNStep() - 1);
	2135	// SuperClassWriter::writeData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1);
	2136	SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot);
	2137	SuperClassWriter::writeTimeAxisDataBounds(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot);
	2138	}
[1096]	2139	if (wtimeCounter)
	2140	{
[1205]	2141	// SuperClassWriter::writeData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1);
	2142	// if (timeCounterType!=record) SuperClassWriter::writeData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1);
	2143	SuperClassWriter::writeTimeAxisData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1,isRoot);
	2144	if (timeCounterType!=record) SuperClassWriter::writeTimeAxisDataBounds(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot);
[692]	2145	}
[1205]	2146	CTimer::get("Files : writing time axis").suspend();
[567]	2147	}
[707]	2148	break;
[567]	2149	}
	2150	case (ONE_FILE) :
	2151	{
[676]	2152	const std::vector<int>& nZoomBeginGlobal = grid->getDistributionServer()->getZoomBeginGlobal();
	2153	const std::vector<int>& nZoomBeginServer = grid->getDistributionServer()->getZoomBeginServer();
	2154	const std::vector<int>& nZoomSizeServer = grid->getDistributionServer()->getZoomSizeServer();
[464]	2155
[676]	2156	std::vector<StdSize> start, count;
[464]	2157
[676]	2158	if (field->getUseCompressedOutput())
	2159	{
	2160	if (grid->isCompressible())
	2161	{
	2162	start.push_back(grid->getOffsetWrittenIndexes());
	2163	count.push_back(grid->getNumberWrittenIndexes());
	2164	}
	2165	else
	2166	{
[887]	2167	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
[676]	2168	std::vector<StdString> domainList = grid->getDomainList();
	2169	std::vector<StdString> axisList = grid->getAxisList();
	2170	int numElement = axisDomainOrder.numElements();
	2171	int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1;
	2172	int idx = nZoomBeginGlobal.size() - 1;
[464]	2173
[676]	2174	start.reserve(nZoomBeginGlobal.size());
	2175	count.reserve(nZoomBeginGlobal.size());
	2176
	2177
	2178	for (int i = numElement - 1; i >= 0; --i)
	2179	{
[887]	2180	if (2 == axisDomainOrder(i))
[676]	2181	{
	2182	CDomain* domain = CDomain::get(domainList[idxDomain]);
	2183
	2184	if (domain->isCompressible())
	2185	{
	2186	start.push_back(domain->getOffsetWrittenIndexes());
	2187	count.push_back(domain->getNumberWrittenIndexes());
[710]	2188	idx -= 2;
[676]	2189	}
	2190	else
	2191	{
[710]	2192	if ((domain->type) != CDomain::type_attr::unstructured)
	2193	{
	2194	start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
	2195	count.push_back(nZoomSizeServer[idx]);
	2196	}
	2197	--idx;
[676]	2198	start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
	2199	count.push_back(nZoomSizeServer[idx]);
[710]	2200	--idx;
[676]	2201	}
	2202	--idxDomain;
	2203	}
[887]	2204	else if (1 == axisDomainOrder(i))
[676]	2205	{
	2206	CAxis* axis = CAxis::get(axisList[idxAxis]);
	2207
	2208	if (axis->isCompressible())
	2209	{
	2210	start.push_back(axis->getOffsetWrittenIndexes());
	2211	count.push_back(axis->getNumberWrittenIndexes());
	2212	}
	2213	else
	2214	{
	2215	start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
	2216	count.push_back(nZoomSizeServer[idx]);
	2217	}
	2218
	2219	--idxAxis;
	2220	--idx;
	2221	}
	2222	}
	2223	}
	2224	}
	2225	else
[498]	2226	{
[705]	2227
[887]	2228	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
[705]	2229	std::vector<StdString> domainList = grid->getDomainList();
	2230	std::vector<StdString> axisList = grid->getAxisList();
	2231	int numElement = axisDomainOrder.numElements();
	2232	int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1;
	2233	int idx = nZoomBeginGlobal.size() - 1;
	2234
	2235	start.reserve(nZoomBeginGlobal.size());
	2236	count.reserve(nZoomBeginGlobal.size());
	2237
	2238	for (int i = numElement - 1; i >= 0; --i)
	2239	{
[887]	2240	if (2 == axisDomainOrder(i))
[705]	2241	{
	2242	CDomain* domain = CDomain::get(domainList[idxDomain]);
[710]	2243	if ((domain->type) != CDomain::type_attr::unstructured)
[705]	2244	{
	2245	start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
	2246	count.push_back(nZoomSizeServer[idx]);
	2247	}
	2248	--idx ;
	2249	start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
	2250	count.push_back(nZoomSizeServer[idx]);
	2251	--idx ;
	2252	--idxDomain;
	2253	}
[887]	2254	else if (1 == axisDomainOrder(i))
[705]	2255	{
	2256	start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
	2257	count.push_back(nZoomSizeServer[idx]);
	2258	--idx;
[887]	2259	}
	2260	else
	2261	{
	2262	if (1 == axisDomainOrder.numElements())
	2263	{
	2264	start.push_back(0);
	2265	count.push_back(1);
	2266	}
	2267	--idx;
	2268	}
[705]	2269	}
[498]	2270	}
[488]	2271
[1205]	2272
	2273	CTimer::get("Files : writing data").resume();
[676]	2274	SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1, &start, &count);
[1205]	2275	CTimer::get("Files : writing data").suspend();
	2276
[1096]	2277	if (wtime)
	2278	{
[1205]	2279	CTimer::get("Files : writing time axis").resume();
[1096]	2280	if ( wtimeData)
[692]	2281	{
[1205]	2282	// SuperClassWriter::writeData(time_data, timeAxisId, isCollective, field->getNStep() - 1);
	2283	// SuperClassWriter::writeData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1);
	2284	SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot);
	2285	SuperClassWriter::writeTimeAxisDataBounds(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot);
[692]	2286	}
[1096]	2287	if (wtimeCounter)
	2288	{
[1205]	2289	// SuperClassWriter::writeData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1);
	2290	// if (timeCounterType!=record) SuperClassWriter::writeData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1);
	2291	SuperClassWriter::writeTimeAxisData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1,isRoot);
	2292	if (timeCounterType!=record) SuperClassWriter::writeTimeAxisDataBounds(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot);
	2293
[1096]	2294	}
[1205]	2295	CTimer::get("Files : writing time axis").suspend();
[1096]	2296	}
[586]	2297
	2298	break;
[286]	2299	}
[567]	2300	}
[219]	2301	}
[498]	2302	catch (CNetCdfException& e)
	2303	{
	2304	StdString msg("On writing field data: ");
	2305	msg.append(fieldid); msg.append("\n");
	2306	msg.append("In the context : ");
	2307	msg.append(context->getId()); msg.append("\n");
	2308	msg.append(e.what());
	2309	ERROR("CNc4DataOutput::writeFieldData_ (CField* field)", << msg);
	2310	}
[219]	2311	}
	2312
	2313	//---------------------------------------------------------------
	2314
	2315	void CNc4DataOutput::writeTimeAxis_
[347]	2316	(CField* field,
[343]	2317	const boost::shared_ptr<CCalendar> cal)
[219]	2318	{
	2319	StdOStringStream oss;
[1096]	2320	bool createInstantAxis=false ;
	2321	bool createCenteredAxis=false ;
	2322	bool createTimeCounterAxis=false ;
	2323
[645]	2324	if (field->getOperationTimeType() == func::CFunctor::once) return ;
[488]	2325
	2326
[1096]	2327	StdString axisId ;
	2328	StdString axisBoundId;
[802]	2329	StdString timeid(getTimeCounterName());
[614]	2330	StdString timeBoundId("axis_nbounds");
[1044]	2331
	2332	StdString strTimeUnits ;
	2333	if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days) strTimeUnits="days since " ;
	2334	else strTimeUnits="seconds since " ;
[989]	2335
[1096]	2336	if (field->getOperationTimeType() == func::CFunctor::instant) field->hasTimeInstant = true;
	2337	if (field->getOperationTimeType() == func::CFunctor::centered) field->hasTimeCentered = true;
	2338
	2339
	2340	if (field->file->time_counter.isEmpty())
[488]	2341	{
[1096]	2342	if (timeCounterType==none) createTimeCounterAxis=true ;
	2343	if (field->hasTimeCentered)
	2344	{
	2345	timeCounterType=centered ;
	2346	if (!hasTimeCentered) createCenteredAxis=true ;
	2347	}
	2348	if (field->hasTimeInstant)
	2349	{
	2350	if (timeCounterType==none) timeCounterType=instant ;
	2351	if (!hasTimeInstant) createInstantAxis=true ;
	2352	}
[488]	2353	}
[1096]	2354	else if (field->file->time_counter==CFile::time_counter_attr::instant)
	2355	{
	2356	if (field->hasTimeCentered)
	2357	{
	2358	if (!hasTimeCentered) createCenteredAxis=true ;
	2359	}
	2360	if (field->hasTimeInstant)
	2361	{
	2362	if (timeCounterType==none) createTimeCounterAxis=true ;
	2363	timeCounterType=instant ;
	2364	if (!hasTimeInstant) createInstantAxis=true ;
	2365	}
	2366	}
	2367	else if (field->file->time_counter==CFile::time_counter_attr::centered)
	2368	{
	2369	if (field->hasTimeCentered)
	2370	{
	2371	if (timeCounterType==none) createTimeCounterAxis=true ;
	2372	timeCounterType=centered ;
	2373	if (!hasTimeCentered) createCenteredAxis=true ;
	2374	}
	2375	if (field->hasTimeInstant)
	2376	{
	2377	if (!hasTimeInstant) createInstantAxis=true ;
	2378	}
	2379	}
	2380	else if (field->file->time_counter==CFile::time_counter_attr::instant_exclusive)
	2381	{
	2382	if (field->hasTimeCentered)
	2383	{
	2384	if (!hasTimeCentered) createCenteredAxis=true ;
	2385	}
	2386	if (field->hasTimeInstant)
	2387	{
	2388	if (timeCounterType==none) createTimeCounterAxis=true ;
	2389	timeCounterType=instant ;
	2390	}
	2391	}
	2392	else if (field->file->time_counter==CFile::time_counter_attr::centered_exclusive)
	2393	{
	2394	if (field->hasTimeCentered)
	2395	{
	2396	if (timeCounterType==none) createTimeCounterAxis=true ;
	2397	timeCounterType=centered ;
	2398	}
	2399	if (field->hasTimeInstant)
	2400	{
	2401	if (!hasTimeInstant) createInstantAxis=true ;
	2402	}
	2403	}
	2404	else if (field->file->time_counter==CFile::time_counter_attr::exclusive)
	2405	{
	2406	if (field->hasTimeCentered)
	2407	{
	2408	if (timeCounterType==none) createTimeCounterAxis=true ;
	2409	if (timeCounterType==instant) createInstantAxis=true ;
	2410	timeCounterType=centered ;
	2411	}
	2412	if (field->hasTimeInstant)
	2413	{
	2414	if (timeCounterType==none)
	2415	{
	2416	createTimeCounterAxis=true ;
	2417	timeCounterType=instant ;
	2418	}
	2419	if (timeCounterType==centered)
	2420	{
	2421	if (!hasTimeInstant) createInstantAxis=true ;
	2422	}
	2423	}
	2424	}
	2425	else if (field->file->time_counter==CFile::time_counter_attr::none)
	2426	{
	2427	if (field->hasTimeCentered)
	2428	{
	2429	if (!hasTimeCentered) createCenteredAxis=true ;
	2430	}
	2431	if (field->hasTimeInstant)
	2432	{
	2433	if (!hasTimeInstant) createInstantAxis=true ;
	2434	}
	2435	}
	2436	else if (field->file->time_counter==CFile::time_counter_attr::record)
	2437	{
	2438	if (timeCounterType==none) createTimeCounterAxis=true ;
	2439	timeCounterType=record ;
	2440	if (field->hasTimeCentered)
	2441	{
	2442	if (!hasTimeCentered) createCenteredAxis=true ;
	2443	}
	2444	if (field->hasTimeInstant)
	2445	{
	2446	if (!hasTimeInstant) createInstantAxis=true ;
	2447	}
	2448	}
	2449
	2450	if (createInstantAxis)
	2451	{
	2452	axisId="time_instant" ;
	2453	axisBoundId="time_instant_bounds";
	2454	hasTimeInstant=true ;
	2455	}
[488]	2456
[1096]	2457	if (createCenteredAxis)
[989]	2458	{
[1096]	2459	axisId="time_centered" ;
	2460	axisBoundId="time_centered_bounds";
	2461	hasTimeCentered=true ;
	2462	}
[989]	2463
[1096]	2464
[498]	2465	try
[219]	2466	{
[1096]	2467	std::vector<StdString> dims;
	2468
	2469	if (createInstantAxis \|\| createCenteredAxis)
	2470	{
	2471	// Adding time_instant or time_centered
	2472	dims.push_back(timeid);
	2473	if (!SuperClassWriter::varExist(axisId))
	2474	{
	2475	SuperClassWriter::addVariable(axisId, NC_DOUBLE, dims);
[488]	2476
[1096]	2477	CDate timeOrigin=cal->getTimeOrigin() ;
	2478	StdOStringStream oss2;
	2479	StdString strInitdate=oss2.str() ;
	2480	StdString strTimeOrigin=timeOrigin.toString() ;
	2481	this->writeTimeAxisAttributes(axisId, cal->getType(),strTimeUnits+strTimeOrigin,
	2482	strTimeOrigin, axisBoundId);
	2483	}
[219]	2484
[1096]	2485	// Adding time_instant_bounds or time_centered_bounds variables
	2486	if (!SuperClassWriter::varExist(axisBoundId))
	2487	{
	2488	dims.clear() ;
	2489	dims.push_back(timeid);
	2490	dims.push_back(timeBoundId);
	2491	SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims);
	2492	}
[498]	2493	}
[488]	2494
[1096]	2495	if (createTimeCounterAxis)
[498]	2496	{
[692]	2497	// Adding time_counter
[1096]	2498	axisId = getTimeCounterName();
[802]	2499	axisBoundId = getTimeCounterName() + "_bounds";
[692]	2500	dims.clear();
	2501	dims.push_back(timeid);
[1096]	2502	if (!SuperClassWriter::varExist(axisId))
[692]	2503	{
[1096]	2504	SuperClassWriter::addVariable(axisId, NC_DOUBLE, dims);
	2505	SuperClassWriter::addAttribute("axis", string("T"), &axisId);
[488]	2506
[989]	2507	if (field->file->time_counter.isEmpty() \|\|
	2508	(field->file->time_counter != CFile::time_counter_attr::record))
[692]	2509	{
	2510	CDate timeOrigin = cal->getTimeOrigin();
	2511	StdString strTimeOrigin = timeOrigin.toString();
[498]	2512
[1096]	2513	this->writeTimeAxisAttributes(axisId, cal->getType(),
[1044]	2514	strTimeUnits+strTimeOrigin,
[692]	2515	strTimeOrigin, axisBoundId);
	2516	}
	2517	}
	2518
	2519	// Adding time_counter_bound dimension
[1096]	2520	if (field->file->time_counter.isEmpty() \|\| (field->file->time_counter != CFile::time_counter_attr::record))
[692]	2521	{
	2522	if (!SuperClassWriter::varExist(axisBoundId))
	2523	{
	2524	dims.clear();
	2525	dims.push_back(timeid);
	2526	dims.push_back(timeBoundId);
	2527	SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims);
	2528	}
	2529	}
[498]	2530	}
[488]	2531	}
[498]	2532	catch (CNetCdfException& e)
[488]	2533	{
[498]	2534	StdString msg("On writing time axis data: ");
	2535	msg.append("In the context : ");
	2536	CContext* context = CContext::getCurrent() ;
	2537	msg.append(context->getId()); msg.append("\n");
	2538	msg.append(e.what());
	2539	ERROR("CNc4DataOutput::writeTimeAxis_ (CField* field, \
	2540	const boost::shared_ptr<CCalendar> cal)", << msg);
[488]	2541	}
[219]	2542	}
	2543
	2544	//---------------------------------------------------------------
[488]	2545
[219]	2546	void CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name,
	2547	const StdString & calendar,
	2548	const StdString & units,
	2549	const StdString & time_origin,
[488]	2550	const StdString & time_bounds,
[219]	2551	const StdString & standard_name,
[613]	2552	const StdString & long_name)
[219]	2553	{
[498]	2554	try
	2555	{
	2556	SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name);
	2557	SuperClassWriter::addAttribute("long_name", long_name , &axis_name);
	2558	SuperClassWriter::addAttribute("calendar", calendar , &axis_name);
	2559	SuperClassWriter::addAttribute("units", units , &axis_name);
	2560	SuperClassWriter::addAttribute("time_origin", time_origin , &axis_name);
	2561	SuperClassWriter::addAttribute("bounds", time_bounds , &axis_name);
	2562	}
	2563	catch (CNetCdfException& e)
	2564	{
	2565	StdString msg("On writing time axis Attribute: ");
	2566	msg.append("In the context : ");
	2567	CContext* context = CContext::getCurrent() ;
	2568	msg.append(context->getId()); msg.append("\n");
	2569	msg.append(e.what());
	2570	ERROR("CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, \
[613]	2571	const StdString & calendar,\
	2572	const StdString & units, \
	2573	const StdString & time_origin, \
	2574	const StdString & time_bounds, \
	2575	const StdString & standard_name, \
	2576	const StdString & long_name)", << msg);
[498]	2577	}
[219]	2578	}
[488]	2579
[219]	2580	//---------------------------------------------------------------
	2581
	2582	void CNc4DataOutput::writeAxisAttributes(const StdString & axis_name,
	2583	const StdString & axis,
	2584	const StdString & standard_name,
	2585	const StdString & long_name,
	2586	const StdString & units,
	2587	const StdString & nav_model)
	2588	{
[498]	2589	try
	2590	{
[613]	2591	if (!axis.empty())
	2592	SuperClassWriter::addAttribute("axis" , axis , &axis_name);
	2593
[498]	2594	SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name);
	2595	SuperClassWriter::addAttribute("long_name" , long_name , &axis_name);
	2596	SuperClassWriter::addAttribute("units" , units , &axis_name);
[973]	2597	// SuperClassWriter::addAttribute("nav_model" , nav_model , &axis_name);
[498]	2598	}
	2599	catch (CNetCdfException& e)
	2600	{
	2601	StdString msg("On writing Axis Attribute: ");
	2602	msg.append("In the context : ");
	2603	CContext* context = CContext::getCurrent() ;
	2604	msg.append(context->getId()); msg.append("\n");
	2605	msg.append(e.what());
	2606	ERROR("CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, \
[613]	2607	const StdString & axis, \
	2608	const StdString & standard_name, \
	2609	const StdString & long_name, \
	2610	const StdString & units, \
	2611	const StdString & nav_model)", << msg);
[498]	2612	}
[219]	2613	}
	2614
	2615	//---------------------------------------------------------------
[488]	2616
[219]	2617	void CNc4DataOutput::writeLocalAttributes
	2618	(int ibegin, int ni, int jbegin, int nj, StdString domid)
	2619	{
[498]	2620	try
	2621	{
[318]	2622	SuperClassWriter::addAttribute(StdString("ibegin").append(domid), ibegin);
	2623	SuperClassWriter::addAttribute(StdString("ni" ).append(domid), ni);
	2624	SuperClassWriter::addAttribute(StdString("jbegin").append(domid), jbegin);
	2625	SuperClassWriter::addAttribute(StdString("nj" ).append(domid), nj);
[498]	2626	}
	2627	catch (CNetCdfException& e)
	2628	{
	2629	StdString msg("On writing Local Attributes: ");
	2630	msg.append("In the context : ");
	2631	CContext* context = CContext::getCurrent() ;
	2632	msg.append(context->getId()); msg.append("\n");
	2633	msg.append(e.what());
	2634	ERROR("CNc4DataOutput::writeLocalAttributes \
	2635	(int ibegin, int ni, int jbegin, int nj, StdString domid)", << msg);
	2636	}
	2637
[219]	2638	}
	2639
[628]	2640	void CNc4DataOutput::writeLocalAttributes_IOIPSL(const StdString& dimXid, const StdString& dimYid,
	2641	int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)
[391]	2642	{
	2643	CArray<int,1> array(2) ;
	2644
[498]	2645	try
	2646	{
	2647	SuperClassWriter::addAttribute("DOMAIN_number_total",size ) ;
	2648	SuperClassWriter::addAttribute("DOMAIN_number", rank) ;
[629]	2649	array = SuperClassWriter::getDimension(dimXid) + 1, SuperClassWriter::getDimension(dimYid) + 1;
[498]	2650	SuperClassWriter::addAttribute("DOMAIN_dimensions_ids",array) ;
	2651	array=ni_glo,nj_glo ;
	2652	SuperClassWriter::addAttribute("DOMAIN_size_global", array) ;
	2653	array=ni,nj ;
	2654	SuperClassWriter::addAttribute("DOMAIN_size_local", array) ;
[819]	2655	array=ibegin+1,jbegin+1 ;
[498]	2656	SuperClassWriter::addAttribute("DOMAIN_position_first", array) ;
[819]	2657	array=ibegin+ni-1+1,jbegin+nj-1+1 ;
[498]	2658	SuperClassWriter::addAttribute("DOMAIN_position_last",array) ;
	2659	array=0,0 ;
	2660	SuperClassWriter::addAttribute("DOMAIN_halo_size_start", array) ;
	2661	SuperClassWriter::addAttribute("DOMAIN_halo_size_end", array);
	2662	SuperClassWriter::addAttribute("DOMAIN_type",string("box")) ;
	2663	/*
	2664	SuperClassWriter::addAttribute("DOMAIN_DIM_N001",string("x")) ;
	2665	SuperClassWriter::addAttribute("DOMAIN_DIM_N002",string("y")) ;
	2666	SuperClassWriter::addAttribute("DOMAIN_DIM_N003",string("axis_A")) ;
	2667	SuperClassWriter::addAttribute("DOMAIN_DIM_N004",string("time_counter")) ;
	2668	*/
	2669	}
	2670	catch (CNetCdfException& e)
	2671	{
[628]	2672	StdString msg("On writing Local Attributes IOIPSL \n");
[498]	2673	msg.append("In the context : ");
	2674	CContext* context = CContext::getCurrent() ;
	2675	msg.append(context->getId()); msg.append("\n");
	2676	msg.append(e.what());
	2677	ERROR("CNc4DataOutput::writeLocalAttributes_IOIPSL \
	2678	(int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)", << msg);
	2679	}
[391]	2680	}
[219]	2681	//---------------------------------------------------------------
	2682
	2683	void CNc4DataOutput:: writeFileAttributes(const StdString & name,
	2684	const StdString & description,
	2685	const StdString & conventions,
	2686	const StdString & production,
	2687	const StdString & timeStamp)
	2688	{
[498]	2689	try
	2690	{
	2691	SuperClassWriter::addAttribute("name" , name);
	2692	SuperClassWriter::addAttribute("description", description);
[613]	2693	SuperClassWriter::addAttribute("title" , description);
	2694	SuperClassWriter::addAttribute("Conventions", conventions);
[989]	2695	// SuperClassWriter::addAttribute("production" , production);
[1048]	2696
[1046]	2697	StdString timeStampStr ;
	2698	if (file->time_stamp_name.isEmpty()) timeStampStr="timeStamp" ;
	2699	else timeStampStr=file->time_stamp_name ;
	2700	SuperClassWriter::addAttribute(timeStampStr, timeStamp);
[1048]	2701
	2702	StdString uuidName ;
	2703	if (file->uuid_name.isEmpty()) uuidName="uuid" ;
	2704	else uuidName=file->uuid_name ;
	2705
	2706	if (file->uuid_format.isEmpty()) SuperClassWriter::addAttribute(uuidName, getUuidStr());
	2707	else SuperClassWriter::addAttribute(uuidName, getUuidStr(file->uuid_format));
	2708
[498]	2709	}
	2710	catch (CNetCdfException& e)
	2711	{
	2712	StdString msg("On writing File Attributes \n ");
	2713	msg.append("In the context : ");
	2714	CContext* context = CContext::getCurrent() ;
	2715	msg.append(context->getId()); msg.append("\n");
	2716	msg.append(e.what());
	2717	ERROR("CNc4DataOutput:: writeFileAttributes(const StdString & name, \
	2718	const StdString & description, \
	2719	const StdString & conventions, \
	2720	const StdString & production, \
	2721	const StdString & timeStamp)", << msg);
	2722	}
[219]	2723	}
	2724
	2725	//---------------------------------------------------------------
	2726
	2727	void CNc4DataOutput::writeMaskAttributes(const StdString & mask_name,
	2728	int data_dim,
	2729	int data_ni,
	2730	int data_nj,
	2731	int data_ibegin,
	2732	int data_jbegin)
	2733	{
[498]	2734	try
	2735	{
	2736	SuperClassWriter::addAttribute("data_dim" , data_dim , &mask_name);
	2737	SuperClassWriter::addAttribute("data_ni" , data_ni , &mask_name);
	2738	SuperClassWriter::addAttribute("data_nj" , data_nj , &mask_name);
	2739	SuperClassWriter::addAttribute("data_ibegin", data_ibegin, &mask_name);
	2740	SuperClassWriter::addAttribute("data_jbegin", data_jbegin, &mask_name);
	2741	}
	2742	catch (CNetCdfException& e)
	2743	{
	2744	StdString msg("On writing Mask Attributes \n ");
	2745	msg.append("In the context : ");
	2746	CContext* context = CContext::getCurrent() ;
	2747	msg.append(context->getId()); msg.append("\n");
	2748	msg.append(e.what());
	2749	ERROR("CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, \
	2750	int data_dim, \
	2751	int data_ni, \
	2752	int data_nj, \
	2753	int data_ibegin, \
	2754	int data_jbegin)", << msg);
	2755	}
[219]	2756	}
	2757
	2758	///--------------------------------------------------------------
	2759
[1044]	2760	StdSize CNc4DataOutput::getRecordFromTime(Time time, double factorUnit)
[707]	2761	{
	2762	std::map<Time, StdSize>::const_iterator it = timeToRecordCache.find(time);
	2763	if (it == timeToRecordCache.end())
	2764	{
[802]	2765	StdString timeAxisBoundsId(getTimeCounterName() + "_bounds");
[1061]	2766	if (!SuperClassWriter::varExist(timeAxisBoundsId)) timeAxisBoundsId = "time_centered_bounds";
	2767	if (!SuperClassWriter::varExist(timeAxisBoundsId)) timeAxisBoundsId = "time_instant_bounds";
[707]	2768
	2769	CArray<double,2> timeAxisBounds;
[1097]	2770	std::vector<StdSize> dimSize(SuperClassWriter::getDimensions(timeAxisBoundsId)) ;
[1044]	2771
[707]	2772	StdSize record = 0;
	2773	double dtime(time);
[1108]	2774	for (int n = dimSize[0] - 1; n >= 0; n--)
[707]	2775	{
[1097]	2776	SuperClassWriter::getTimeAxisBounds(timeAxisBounds, timeAxisBoundsId, isCollective, n);
	2777	timeAxisBounds*=factorUnit ;
	2778	if (timeAxisBounds(1, 0) < dtime)
[707]	2779	{
	2780	record = n + 1;
[1108]	2781	break;
[707]	2782	}
	2783	}
	2784	it = timeToRecordCache.insert(std::make_pair(time, record)).first;
	2785	}
[1108]	2786	return it->second;
[707]	2787	}
[774]	2788
	2789	///--------------------------------------------------------------
	2790
	2791	bool CNc4DataOutput::isWrittenDomain(const std::string& domainName) const
	2792	{
	2793	return (this->writtenDomains.find(domainName) != this->writtenDomains.end());
	2794	}
	2795
	2796	bool CNc4DataOutput::isWrittenCompressedDomain(const std::string& domainName) const
	2797	{
	2798	return (this->writtenCompressedDomains.find(domainName) != this->writtenCompressedDomains.end());
	2799	}
	2800
	2801	bool CNc4DataOutput::isWrittenAxis(const std::string& axisName) const
	2802	{
	2803	return (this->writtenAxis.find(axisName) != this->writtenAxis.end());
	2804	}
	2805
	2806	bool CNc4DataOutput::isWrittenCompressedAxis(const std::string& axisName) const
	2807	{
	2808	return (this->writtenCompressedAxis.find(axisName) != this->writtenCompressedAxis.end());
	2809	}
	2810
[887]	2811	bool CNc4DataOutput::isWrittenScalar(const std::string& scalarName) const
	2812	{
	2813	return (this->writtenScalar.find(scalarName) != this->writtenScalar.end());
	2814	}
	2815
[774]	2816	void CNc4DataOutput::setWrittenDomain(const std::string& domainName)
	2817	{
	2818	this->writtenDomains.insert(domainName);
	2819	}
	2820
	2821	void CNc4DataOutput::setWrittenCompressedDomain(const std::string& domainName)
	2822	{
	2823	this->writtenCompressedDomains.insert(domainName);
	2824	}
	2825
	2826	void CNc4DataOutput::setWrittenAxis(const std::string& axisName)
	2827	{
	2828	this->writtenAxis.insert(axisName);
	2829	}
	2830
	2831	void CNc4DataOutput::setWrittenCompressedAxis(const std::string& axisName)
	2832	{
	2833	this->writtenCompressedAxis.insert(axisName);
	2834	}
[887]	2835
	2836	void CNc4DataOutput::setWrittenScalar(const std::string& scalarName)
	2837	{
	2838	this->writtenScalar.insert(scalarName);
	2839	}
[335]	2840	} // namespace xios

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