[591] | 1 | #ifndef __XIOS_CGrid__ |
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| 2 | #define __XIOS_CGrid__ |
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[219] | 3 | |
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[591] | 4 | /// XIOS headers /// |
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| 5 | #include "xios_spl.hpp" |
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[219] | 6 | #include "group_factory.hpp" |
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| 7 | |
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| 8 | #include "declare_group.hpp" |
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| 9 | #include "domain.hpp" |
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| 10 | #include "axis.hpp" |
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[887] | 11 | #include "scalar.hpp" |
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[369] | 12 | #include "array_new.hpp" |
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| 13 | #include "attribute_array.hpp" |
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[552] | 14 | #include "distribution_server.hpp" |
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[553] | 15 | #include "client_server_mapping.hpp" |
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[567] | 16 | #include "utils.hpp" |
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[619] | 17 | #include "transformation_enum.hpp" |
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[219] | 18 | |
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[335] | 19 | namespace xios { |
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[509] | 20 | |
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[1642] | 21 | /// ////////////////////// Declarations ////////////////////// /// |
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[219] | 22 | |
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| 23 | class CGridGroup; |
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| 24 | class CGridAttributes; |
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[540] | 25 | class CDomainGroup; |
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| 26 | class CAxisGroup; |
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[887] | 27 | class CScalarGroup; |
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[219] | 28 | class CGrid; |
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[551] | 29 | class CDistributionClient; |
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[552] | 30 | class CDistributionServer; |
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[553] | 31 | class CServerDistributionDescription; |
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| 32 | class CClientServerMapping; |
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[620] | 33 | class CGridTransformation; |
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[219] | 34 | |
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| 35 | ///-------------------------------------------------------------- |
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| 36 | |
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| 37 | // Declare/Define CGridAttribute |
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| 38 | BEGIN_DECLARE_ATTRIBUTE_MAP(CGrid) |
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| 39 | # include "grid_attribute.conf" |
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| 40 | END_DECLARE_ATTRIBUTE_MAP(CGrid) |
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| 41 | |
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| 42 | ///-------------------------------------------------------------- |
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| 43 | |
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| 44 | class CGrid |
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| 45 | : public CObjectTemplate<CGrid> |
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| 46 | , public CGridAttributes |
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| 47 | { |
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| 48 | /// typedef /// |
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| 49 | typedef CObjectTemplate<CGrid> SuperClass; |
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| 50 | typedef CGridAttributes SuperClassAttribute; |
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| 51 | |
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[676] | 52 | public: |
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[219] | 53 | |
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| 54 | typedef CGridAttributes RelAttributes; |
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| 55 | typedef CGridGroup RelGroup; |
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| 56 | |
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[300] | 57 | enum EEventId |
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| 58 | { |
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[887] | 59 | EVENT_ID_INDEX, EVENT_ID_ADD_DOMAIN, EVENT_ID_ADD_AXIS, EVENT_ID_ADD_SCALAR |
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[650] | 60 | }; |
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[509] | 61 | |
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[219] | 62 | /// Constructeurs /// |
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| 63 | CGrid(void); |
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[650] | 64 | explicit CGrid(const StdString& id); |
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| 65 | CGrid(const CGrid& grid); // Not implemented yet. |
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| 66 | CGrid(const CGrid* const grid); // Not implemented yet. |
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[219] | 67 | |
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| 68 | /// Traitements /// |
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[509] | 69 | // void solveReference(void); |
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[219] | 70 | |
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[676] | 71 | void checkEligibilityForCompressedOutput(); |
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| 72 | |
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[509] | 73 | void solveDomainAxisRef(bool areAttributesChecked); |
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| 74 | |
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| 75 | void checkMaskIndex(bool doCalculateIndex); |
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| 76 | |
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[650] | 77 | // virtual void toBinary (StdOStream& os) const; |
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| 78 | // virtual void fromBinary(StdIStream& is); |
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[219] | 79 | |
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[676] | 80 | void addRelFileCompressed(const StdString& filename); |
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| 81 | |
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[219] | 82 | /// Tests /// |
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[676] | 83 | bool isCompressible(void) const; |
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| 84 | bool isWrittenCompressed(const StdString& filename) const; |
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[219] | 85 | |
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[676] | 86 | public: |
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[219] | 87 | |
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| 88 | /// Accesseurs /// |
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[1078] | 89 | StdSize getDimension(void); |
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[509] | 90 | |
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[286] | 91 | StdSize getDataSize(void) const; |
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[219] | 92 | |
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[1642] | 93 | /// Entrees-sorties de champs |
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[369] | 94 | template <int n> |
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[593] | 95 | void inputField(const CArray<double,n>& field, CArray<double,1>& stored) const; |
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| 96 | template <int n> |
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[1642] | 97 | void maskField(const CArray<double,n>& field, CArray<double,1>& stored) const; |
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| 98 | template <int n> |
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[1460] | 99 | void outputField(const CArray<double,1>& stored, CArray<double,n>& field) const; |
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| 100 | template <int n> |
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| 101 | void uncompressField(const CArray<double,n>& data, CArray<double,1>& outData) const; |
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[509] | 102 | |
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[650] | 103 | virtual void parse(xml::CXMLNode& node); |
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[540] | 104 | |
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[219] | 105 | /// Destructeur /// |
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| 106 | virtual ~CGrid(void); |
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| 107 | |
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[676] | 108 | public: |
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[219] | 109 | |
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| 110 | /// Accesseurs statiques /// |
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| 111 | static StdString GetName(void); |
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| 112 | static StdString GetDefName(void); |
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[509] | 113 | |
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[219] | 114 | static ENodeType GetType(void); |
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| 115 | |
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| 116 | /// Instanciateurs Statiques /// |
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[347] | 117 | static CGrid* createGrid(CDomain* domain); |
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| 118 | static CGrid* createGrid(CDomain* domain, CAxis* axis); |
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[745] | 119 | static CGrid* createGrid(const std::vector<CDomain*>& domains, const std::vector<CAxis*>& axis, |
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[887] | 120 | const CArray<int,1>& axisDomainOrder = CArray<int,1>()); |
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[745] | 121 | static CGrid* createGrid(StdString id, const std::vector<CDomain*>& domains, const std::vector<CAxis*>& axis, |
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[887] | 122 | const std::vector<CScalar*>& scalars, const CArray<int,1>& axisDomainOrder = CArray<int,1>()); |
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| 123 | static CGrid* createGrid(const std::vector<CDomain*>& domains, const std::vector<CAxis*>& axis, |
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| 124 | const std::vector<CScalar*>& scalars, const CArray<int,1>& axisDomainOrder); |
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[745] | 125 | static StdString generateId(const std::vector<CDomain*>& domains, const std::vector<CAxis*>& axis, |
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[887] | 126 | const std::vector<CScalar*>& scalars, const CArray<int,1>& axisDomainOrder = CArray<int,1>()); |
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[823] | 127 | static StdString generateId(const CGrid* gridSrc, const CGrid* gridDest); |
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| 128 | static CGrid* cloneGrid(const StdString& idNewGrid, CGrid* gridSrc); |
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[219] | 129 | |
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[1460] | 130 | public: |
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[219] | 131 | void computeIndexServer(void); |
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| 132 | void computeIndex(void); |
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[586] | 133 | void computeIndexScalarGrid(); |
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[1460] | 134 | void computeWrittenIndex(); |
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[219] | 135 | |
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[509] | 136 | void solveDomainRef(bool checkAtt); |
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| 137 | void solveAxisRef(bool checkAtt); |
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[887] | 138 | void solveScalarRef(bool checkAtt); |
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[540] | 139 | void solveDomainAxisRefInheritance(bool apply = true); |
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[619] | 140 | void solveTransformations(); |
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[775] | 141 | void solveDomainAxisBaseRef(); |
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[509] | 142 | |
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[835] | 143 | CDomain* addDomain(const std::string& id=StdString()); |
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| 144 | CAxis* addAxis(const std::string& id=StdString()); |
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[887] | 145 | CScalar* addScalar(const std::string& id=StdString()); |
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[540] | 146 | void sendAddDomain(const std::string& id=""); |
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| 147 | void sendAddAxis(const std::string& id=""); |
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[887] | 148 | void sendAddScalar(const std::string& id=""); |
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[540] | 149 | void sendAllDomains(); |
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| 150 | void sendAllAxis(); |
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[887] | 151 | void sendAllScalars(); |
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[540] | 152 | |
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[650] | 153 | static void recvAddDomain(CEventServer& event); |
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| 154 | void recvAddDomain(CBufferIn& buffer); |
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| 155 | static void recvAddAxis(CEventServer& event); |
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| 156 | void recvAddAxis(CBufferIn& buffer); |
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[887] | 157 | static void recvAddScalar(CEventServer& event); |
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| 158 | void recvAddScalar(CBufferIn& buffer); |
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[540] | 159 | |
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[650] | 160 | static bool dispatchEvent(CEventServer& event); |
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| 161 | static void recvIndex(CEventServer& event); |
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| 162 | void recvIndex(vector<int> ranks, vector<CBufferIn*> buffers); |
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| 163 | void sendIndex(void); |
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[586] | 164 | void sendIndexScalarGrid(); |
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[509] | 165 | |
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[1460] | 166 | void setContextClient(CContextClient* contextClient); |
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| 167 | |
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[509] | 168 | void computeDomConServer(); |
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| 169 | std::map<int, int> getDomConServerSide(); |
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[1460] | 170 | std::map<int, StdSize> getAttributesBufferSize(CContextClient* client, bool bufferForWriting = false); |
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| 171 | std::map<int, StdSize> getDataBufferSize(CContextClient* client, const std::string& id = "", bool bufferForWriting = false); |
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[540] | 172 | std::vector<StdString> getDomainList(); |
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| 173 | std::vector<StdString> getAxisList(); |
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[887] | 174 | std::vector<StdString> getScalarList(); |
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[540] | 175 | std::vector<CDomain*> getDomains(); |
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| 176 | std::vector<CAxis*> getAxis(); |
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[887] | 177 | std::vector<CScalar*> getScalars(); |
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[943] | 178 | CDomain* getDomain(int domainIndex); |
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| 179 | CAxis* getAxis(int axisIndex); |
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| 180 | CScalar* getScalar(int scalarIndex); |
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[551] | 181 | std::vector<int> getAxisOrder(); |
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[567] | 182 | std::vector<int> getGlobalDimension(); |
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[1460] | 183 | bool isScalarGrid() const; |
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[540] | 184 | |
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[567] | 185 | bool doGridHaveDataToWrite(); |
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[1460] | 186 | bool doGridHaveDataDistributed(CContextClient* client = 0); |
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[567] | 187 | size_t getWrittenDataSize() const; |
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[676] | 188 | int getNumberWrittenIndexes() const; |
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| 189 | int getTotalNumberWrittenIndexes() const; |
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| 190 | int getOffsetWrittenIndexes() const; |
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[567] | 191 | |
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[834] | 192 | CDistributionServer* getDistributionServer(); |
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| 193 | CDistributionClient* getDistributionClient(); |
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[620] | 194 | CGridTransformation* getTransformations(); |
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[567] | 195 | |
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[632] | 196 | void transformGrid(CGrid* transformGridSrc); |
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[775] | 197 | void completeGrid(CGrid* transformGridSrc = 0); |
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[687] | 198 | void doAutoDistribution(CGrid* transformGridSrc); |
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[619] | 199 | bool isTransformed(); |
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| 200 | void setTransformed(); |
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[890] | 201 | bool isGenerated(); |
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| 202 | void setGenerated(); |
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[823] | 203 | void addTransGridSource(CGrid* gridSrc); |
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| 204 | std::map<CGrid*, std::pair<bool,StdString> >& getTransGridSource(); |
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[824] | 205 | bool hasTransform(); |
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[1460] | 206 | size_t getGlobalWrittenSize(void) ; |
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[219] | 207 | public: |
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[1460] | 208 | CArray<int, 1> storeIndex_client; |
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[1642] | 209 | CArray<bool, 1> storeMask_client; |
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[219] | 210 | |
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[1460] | 211 | /** Map containing indexes that will be sent in sendIndex(). */ |
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| 212 | std::map<CContextClient*, map<int, CArray<int, 1> > > storeIndex_toSrv; |
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[219] | 213 | |
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[1460] | 214 | /** Map storing the number of senders. Key = size of receiver's intracomm */ |
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| 215 | std::map<int, std::map<int,int> > nbSenders; |
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[509] | 216 | |
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[1460] | 217 | std::map<CContextClient*, std::map<int,int> > nbReadSenders; |
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[509] | 218 | |
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[1460] | 219 | map<int, CArray<int, 1> > storeIndex_fromSrv; // Support, for now, reading with level-1 server |
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| 220 | |
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| 221 | map<int, CArray<size_t, 1> > outIndexFromClient; // Deprecated |
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| 222 | |
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| 223 | map<int, CArray<size_t, 1> > compressedOutIndexFromClient; |
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| 224 | |
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| 225 | /** Map storing received indexes. Key = sender rank, value = index array. */ |
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| 226 | map<int, CArray<size_t, 1> > outGlobalIndexFromClient; |
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| 227 | |
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| 228 | // Manh Ha's comment: " A client receives global index from other clients (via recvIndex) |
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| 229 | // then does mapping these index into local index of STORE_CLIENTINDEX |
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| 230 | // In this way, store_clientIndex can be used as an input of a source filter |
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| 231 | // Maybe we need a flag to determine whether a client wants to write. TODO " |
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| 232 | |
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| 233 | /** Map storing received data. Key = sender rank, value = data array. |
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| 234 | * The map is created in CGrid::computeClientIndex and filled upon receiving data in CField::recvUpdateData() */ |
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| 235 | map<int, CArray<size_t, 1> > outLocalIndexStoreOnClient; |
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| 236 | |
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| 237 | /** Indexes calculated based on server-like distribution. |
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| 238 | * They are used for writing/reading data and only calculated for server level that does the writing/reading. |
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| 239 | * Along with localIndexToWriteOnClient, these indexes are used to correctly place incoming data. */ |
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| 240 | CArray<size_t,1> localIndexToWriteOnServer; |
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| 241 | |
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| 242 | /** Indexes calculated based on client-like distribution. |
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| 243 | * They are used for writing/reading data and only calculated for server level that does the writing/reading. |
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| 244 | * Along with localIndexToWriteOnServer, these indexes are used to correctly place incoming data. */ |
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| 245 | CArray<size_t,1> localIndexToWriteOnClient; |
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| 246 | |
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| 247 | CArray<size_t,1> indexFromClients; |
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| 248 | |
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[1642] | 249 | bool hasMask(void) const; |
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[650] | 250 | void checkMask(void); |
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[821] | 251 | void createMask(void); |
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[1460] | 252 | void modifyMask(const CArray<int,1>& indexToModify, bool valueToModify = false); |
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| 253 | void modifyMaskSize(const std::vector<int>& newDimensionSize, bool newValue = false); |
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[509] | 254 | |
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[1460] | 255 | void computeGridGlobalDimension(const std::vector<CDomain*>& domains, |
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| 256 | const std::vector<CAxis*>& axis, |
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| 257 | const std::vector<CScalar*>& scalars, |
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| 258 | const CArray<int,1>& axisDomainOrder); |
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| 259 | |
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[540] | 260 | private: |
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[567] | 261 | template<int N> |
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| 262 | void checkGridMask(CArray<bool,N>& gridMask, |
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[664] | 263 | const std::vector<CArray<bool,1>* >& domainMasks, |
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[567] | 264 | const std::vector<CArray<bool,1>* >& axisMasks, |
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[887] | 265 | const CArray<int,1>& axisDomainOrder, |
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[821] | 266 | bool createMask = false); |
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[623] | 267 | template<int N> |
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[1460] | 268 | void modifyGridMask(CArray<bool,N>& gridMask, const CArray<int,1>& indexToModify, bool valueToModify); |
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[623] | 269 | |
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[1460] | 270 | template<int N> |
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| 271 | void modifyGridMaskSize(CArray<bool,N>& gridMask, const std::vector<int>& eachDimSize, bool newValue); |
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| 272 | |
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| 273 | void storeField_arr(const double* const data, CArray<double, 1>& stored) const; |
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| 274 | void restoreField_arr(const CArray<double, 1>& stored, double* const data) const; |
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| 275 | void uncompressField_arr(const double* const data, CArray<double, 1>& outData) const; |
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[1642] | 276 | void maskField_arr(const double* const data, CArray<double, 1>& stored) const; |
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[1460] | 277 | |
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[540] | 278 | void setVirtualDomainGroup(CDomainGroup* newVDomainGroup); |
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| 279 | void setVirtualAxisGroup(CAxisGroup* newVAxisGroup); |
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[887] | 280 | void setVirtualScalarGroup(CScalarGroup* newVScalarGroup); |
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[567] | 281 | |
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[887] | 282 | void setDomainList(const std::vector<CDomain*> domains = std::vector<CDomain*>()); |
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[540] | 283 | void setAxisList(const std::vector<CAxis*> axis = std::vector<CAxis*>()); |
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[887] | 284 | void setScalarList(const std::vector<CScalar*> scalars = std::vector<CScalar*>()); |
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[540] | 285 | |
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[887] | 286 | CDomainGroup* getVirtualDomainGroup() const; |
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[540] | 287 | CAxisGroup* getVirtualAxisGroup() const; |
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[887] | 288 | CScalarGroup* getVirtualScalarGroup() const; |
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[619] | 289 | |
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[657] | 290 | void checkAttributesAfterTransformation(); |
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[619] | 291 | void setTransformationAlgorithms(); |
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[1545] | 292 | void computeIndexByElement(const std::vector<std::unordered_map<size_t,std::vector<int> > >& indexServerOnElement, |
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[1460] | 293 | const CContextClient* client, |
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[865] | 294 | CClientServerMapping::GlobalIndexMap& globalIndexOnServer); |
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[1078] | 295 | int computeGridGlobalDimension(std::vector<int>& globalDim, |
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| 296 | const std::vector<CDomain*> domains, |
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| 297 | const std::vector<CAxis*> axis, |
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| 298 | const std::vector<CScalar*> scalars, |
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| 299 | const CArray<int,1>& axisDomainOrder); |
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[1460] | 300 | int getDistributedDimension(); |
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[1078] | 301 | |
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[1460] | 302 | void computeClientIndex(); |
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| 303 | void computeConnectedClients(); |
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| 304 | void computeClientIndexScalarGrid(); |
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| 305 | void computeConnectedClientsScalarGrid(); |
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| 306 | |
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[540] | 307 | private: |
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[1460] | 308 | |
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| 309 | /** Clients that have to send a grid. There can be multiple clients in case of secondary server, otherwise only one client. */ |
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| 310 | std::list<CContextClient*> clients; |
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| 311 | std::set<CContextClient*> clientsSet; |
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| 312 | |
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| 313 | bool isChecked; |
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| 314 | bool isDomainAxisChecked; |
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| 315 | bool isIndexSent; |
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| 316 | |
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[540] | 317 | CDomainGroup* vDomainGroup_; |
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| 318 | CAxisGroup* vAxisGroup_; |
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[887] | 319 | CScalarGroup* vScalarGroup_; |
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| 320 | std::vector<std::string> axisList_, domList_, scalarList_; |
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| 321 | bool isAxisListSet, isDomListSet, isScalarListSet; |
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[567] | 322 | |
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[1460] | 323 | /** Client-like distribution calculated based on the knowledge of the entire grid */ |
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[551] | 324 | CDistributionClient* clientDistribution_; |
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[1460] | 325 | |
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| 326 | /** Server-like distribution calculated upon receiving indexes */ |
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[552] | 327 | CDistributionServer* serverDistribution_; |
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[1460] | 328 | |
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[568] | 329 | CClientServerMapping* clientServerMap_; |
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[567] | 330 | size_t writtenDataSize_; |
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[676] | 331 | int numberWrittenIndexes_, totalNumberWrittenIndexes_, offsetWrittenIndexes_; |
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[1460] | 332 | |
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| 333 | /** Map storing local ranks of connected receivers. Key = size of receiver's intracomm. |
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| 334 | * It is calculated in computeConnectedClients(). */ |
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| 335 | std::map<int, std::vector<int> > connectedServerRank_; |
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| 336 | |
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| 337 | /** Map storing the size of data to be send. Key = size of receiver's intracomm |
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| 338 | * It is calculated in computeConnectedClients(). */ |
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| 339 | std::map<int, std::map<int,size_t> > connectedDataSize_; |
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| 340 | |
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| 341 | /** Ranks of connected receivers in case of reading. It is calculated in recvIndex(). */ |
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| 342 | std::vector<int> connectedServerRankRead_; |
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| 343 | |
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| 344 | /** Size of data to be send in case of reading. It is calculated in recvIndex(). */ |
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| 345 | std::map<int,size_t> connectedDataSizeRead_; |
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| 346 | |
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| 347 | bool isDataDistributed_; |
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[676] | 348 | //! True if and only if the data defined on the grid can be outputted in a compressed way |
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| 349 | bool isCompressible_; |
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| 350 | std::set<std::string> relFilesCompressed; |
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[619] | 351 | |
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[1460] | 352 | bool isTransformed_, isGenerated_; |
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| 353 | bool computedWrittenIndex_; |
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[620] | 354 | std::vector<int> axisPositionInGrid_; |
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| 355 | CGridTransformation* transformations_; |
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[1078] | 356 | bool hasDomainAxisBaseRef_; |
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[823] | 357 | std::map<CGrid*, std::pair<bool,StdString> > gridSrc_; |
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[824] | 358 | bool hasTransform_; |
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[1460] | 359 | |
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| 360 | /** Map storing global indexes of server-like (band-wise) distribution for sending to receivers. |
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| 361 | * Key = size of receiver's intracomm. |
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| 362 | */ |
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| 363 | // std::map<CContextClient*, CClientServerMapping::GlobalIndexMap> globalIndexOnServer_; |
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| 364 | std::map<int, CClientServerMapping::GlobalIndexMap> globalIndexOnServer_; |
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| 365 | |
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| 366 | |
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| 367 | /** List order of axis and domain in a grid, if there is a domain, it will take value 1 (true), axis 0 (false) */ |
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[887] | 368 | std::vector<int> order_; |
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[1460] | 369 | |
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[219] | 370 | }; // class CGrid |
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| 371 | |
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| 372 | ///-------------------------------------------------------------- |
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| 373 | |
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[369] | 374 | template <int n> |
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[567] | 375 | void CGrid::inputField(const CArray<double,n>& field, CArray<double,1>& stored) const |
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[1642] | 376 | TRY |
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[219] | 377 | { |
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[1460] | 378 | //#ifdef __XIOS_DEBUG |
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[369] | 379 | if (this->getDataSize() != field.numElements()) |
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| 380 | ERROR("void CGrid::inputField(const CArray<double,n>& field, CArray<double,1>& stored) const", |
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[680] | 381 | << "[ Awaiting data of size = " << this->getDataSize() << ", " |
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[421] | 382 | << "Received data size = " << field.numElements() << " ] " |
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[955] | 383 | << "The data array does not have the right size! " |
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[1460] | 384 | << "Grid = " << this->getId()) |
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| 385 | //#endif |
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[650] | 386 | this->storeField_arr(field.dataFirst(), stored); |
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[219] | 387 | } |
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[1642] | 388 | CATCH |
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[219] | 389 | |
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[593] | 390 | template <int n> |
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[1642] | 391 | void CGrid::maskField(const CArray<double,n>& field, CArray<double,1>& stored) const |
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| 392 | { |
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| 393 | //#ifdef __XIOS_DEBUG |
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| 394 | if (this->getDataSize() != field.numElements()) |
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| 395 | ERROR("void CGrid::inputField(const CArray<double,n>& field, CArray<double,1>& stored) const", |
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| 396 | << "[ Awaiting data of size = " << this->getDataSize() << ", " |
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| 397 | << "Received data size = " << field.numElements() << " ] " |
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| 398 | << "The data array does not have the right size! " |
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| 399 | << "Grid = " << this->getId()) |
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| 400 | //#endif |
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| 401 | this->maskField_arr(field.dataFirst(), stored); |
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| 402 | } |
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| 403 | |
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| 404 | template <int n> |
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[593] | 405 | void CGrid::outputField(const CArray<double,1>& stored, CArray<double,n>& field) const |
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[1642] | 406 | TRY |
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[593] | 407 | { |
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[1460] | 408 | //#ifdef __XIOS_DEBUG |
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[593] | 409 | if (this->getDataSize() != field.numElements()) |
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| 410 | ERROR("void CGrid::outputField(const CArray<double,1>& stored, CArray<double,n>& field) const", |
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| 411 | << "[ Size of the data = " << this->getDataSize() << ", " |
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| 412 | << "Output data size = " << field.numElements() << " ] " |
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[955] | 413 | << "The ouput array does not have the right size! " |
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[1460] | 414 | << "Grid = " << this->getId()) |
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| 415 | //#endif |
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[593] | 416 | this->restoreField_arr(stored, field.dataFirst()); |
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| 417 | } |
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[1642] | 418 | CATCH |
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[593] | 419 | |
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[1460] | 420 | /*! |
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| 421 | This function removes the effect of mask on received data on the server. |
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| 422 | This function only serve for the checking purpose. TODO: Something must be done to seperate mask and data_index from each other in received data |
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| 423 | \data data received data with masking effect on the server |
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| 424 | \outData data without masking effect |
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| 425 | */ |
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| 426 | template <int N> |
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| 427 | void CGrid::uncompressField(const CArray<double,N>& data, CArray<double,1>& outData) const |
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[1642] | 428 | TRY |
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[1460] | 429 | { |
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| 430 | uncompressField_arr(data.dataFirst(), outData); |
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| 431 | } |
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[1642] | 432 | CATCH |
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[1460] | 433 | |
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[567] | 434 | template<int N> |
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| 435 | void CGrid::checkGridMask(CArray<bool,N>& gridMask, |
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[664] | 436 | const std::vector<CArray<bool,1>* >& domainMasks, |
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[567] | 437 | const std::vector<CArray<bool,1>* >& axisMasks, |
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[887] | 438 | const CArray<int,1>& axisDomainOrder, |
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[821] | 439 | bool createMask) |
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[1642] | 440 | TRY |
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[567] | 441 | { |
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| 442 | int idx = 0; |
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| 443 | int numElement = axisDomainOrder.numElements(); |
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[650] | 444 | int dim = domainMasks.size() * 2 + axisMasks.size(); |
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[664] | 445 | std::vector<CDomain*> domainP = this->getDomains(); |
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[1460] | 446 | std::vector<CAxis*> axisP = this->getAxis(); |
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[567] | 447 | |
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| 448 | std::vector<int> idxLoop(dim,0), indexMap(numElement), eachDimSize(dim); |
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| 449 | std::vector<int> currentIndex(dim); |
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| 450 | int idxDomain = 0, idxAxis = 0; |
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| 451 | for (int i = 0; i < numElement; ++i) |
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| 452 | { |
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| 453 | indexMap[i] = idx; |
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[887] | 454 | if (2 == axisDomainOrder(i)) { |
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[664] | 455 | eachDimSize[indexMap[i]] = domainP[idxDomain]->ni; |
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| 456 | eachDimSize[indexMap[i]+1] = domainP[idxDomain]->nj; |
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[567] | 457 | idx += 2; ++idxDomain; |
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| 458 | } |
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[887] | 459 | else if (1 == axisDomainOrder(i)) { |
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[1460] | 460 | // eachDimSize[indexMap[i]] = axisMasks[idxAxis]->numElements(); |
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| 461 | eachDimSize[indexMap[i]] = axisP[idxAxis]->n; |
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[567] | 462 | ++idx; ++idxAxis; |
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| 463 | } |
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[976] | 464 | else {}; |
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[567] | 465 | } |
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| 466 | |
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[821] | 467 | if (!gridMask.isEmpty() && !createMask) |
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[567] | 468 | { |
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| 469 | for (int i = 0; i < dim; ++i) |
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| 470 | { |
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| 471 | if (gridMask.extent(i) != eachDimSize[i]) |
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[680] | 472 | ERROR("CGrid::checkMask(void)", |
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| 473 | << "The mask has one dimension whose size is different from the one of the local grid." << std::endl |
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| 474 | << "Local size of dimension " << i << " is " << eachDimSize[i] << "." << std::endl |
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[955] | 475 | << "Mask size for dimension " << i << " is " << gridMask.extent(i) << "." << std::endl |
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[1460] | 476 | << "Grid = " << this->getId()) |
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[567] | 477 | } |
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| 478 | } |
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| 479 | else { |
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| 480 | CArrayBoolTraits<CArray<bool,N> >::resizeArray(gridMask,eachDimSize); |
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| 481 | gridMask = true; |
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| 482 | } |
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| 483 | |
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| 484 | int ssize = gridMask.numElements(); |
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| 485 | idx = 0; |
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| 486 | while (idx < ssize) |
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| 487 | { |
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| 488 | for (int i = 0; i < dim-1; ++i) |
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| 489 | { |
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| 490 | if (idxLoop[i] == eachDimSize[i]) |
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| 491 | { |
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| 492 | idxLoop[i] = 0; |
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| 493 | ++idxLoop[i+1]; |
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| 494 | } |
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| 495 | } |
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| 496 | |
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| 497 | // Find out outer index |
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| 498 | idxDomain = idxAxis = 0; |
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| 499 | bool maskValue = true; |
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| 500 | for (int i = 0; i < numElement; ++i) |
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| 501 | { |
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[887] | 502 | if (2 == axisDomainOrder(i)) |
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[567] | 503 | { |
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[1460] | 504 | int idxTmp = idxLoop[indexMap[i]] + idxLoop[indexMap[i]+1] * eachDimSize[indexMap[i]]; |
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| 505 | if (idxTmp < (*domainMasks[idxDomain]).numElements()) |
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| 506 | maskValue = maskValue && (*domainMasks[idxDomain])(idxTmp); |
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| 507 | else |
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| 508 | maskValue = false; |
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[567] | 509 | ++idxDomain; |
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| 510 | } |
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[887] | 511 | else if (1 == axisDomainOrder(i)) |
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[567] | 512 | { |
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[1460] | 513 | int idxTmp = idxLoop[indexMap[i]]; |
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| 514 | if (idxTmp < (*axisMasks[idxAxis]).numElements()) |
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| 515 | maskValue = maskValue && (*axisMasks[idxAxis])(idxTmp); |
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| 516 | else |
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| 517 | maskValue = false; |
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| 518 | |
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[567] | 519 | ++idxAxis; |
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| 520 | } |
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| 521 | } |
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| 522 | |
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| 523 | int maskIndex = idxLoop[0]; |
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| 524 | int mulDim = 1; |
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| 525 | for (int k = 1; k < dim; ++k) |
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| 526 | { |
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| 527 | mulDim *= eachDimSize[k-1]; |
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| 528 | maskIndex += idxLoop[k]*mulDim; |
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| 529 | } |
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[623] | 530 | *(gridMask.dataFirst()+maskIndex) &= maskValue; |
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[567] | 531 | |
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| 532 | ++idxLoop[0]; |
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| 533 | ++idx; |
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| 534 | } |
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| 535 | } |
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[1642] | 536 | CATCH_DUMP_ATTR |
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[567] | 537 | |
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[1460] | 538 | template<int N> |
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| 539 | void CGrid::modifyGridMaskSize(CArray<bool,N>& gridMask, |
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| 540 | const std::vector<int>& eachDimSize, |
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| 541 | bool newValue) |
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[1642] | 542 | TRY |
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[1460] | 543 | { |
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| 544 | if (N != eachDimSize.size()) |
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| 545 | { |
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| 546 | // ERROR("CGrid::modifyGridMaskSize(CArray<bool,N>& gridMask, |
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| 547 | // const std::vector<int>& eachDimSize, |
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| 548 | // bool newValue)", |
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| 549 | // << "Dimension size of the mask is different from input dimension size." << std::endl |
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| 550 | // << "Mask dimension is " << N << "." << std::endl |
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| 551 | // << "Input dimension is " << eachDimSize.size() << "." << std::endl |
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| 552 | // << "Grid = " << this->getId()) |
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| 553 | } |
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| 554 | CArrayBoolTraits<CArray<bool,N> >::resizeArray(gridMask,eachDimSize); |
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| 555 | gridMask = newValue; |
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| 556 | } |
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[1642] | 557 | CATCH_DUMP_ATTR |
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[1460] | 558 | |
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| 559 | |
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[623] | 560 | /*! |
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| 561 | Modify the current mask of grid, the local index to be modified will take value false |
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| 562 | \param [in/out] gridMask current mask of grid |
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| 563 | \param [in] indexToModify local index to modify |
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| 564 | */ |
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| 565 | template<int N> |
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[1460] | 566 | void CGrid::modifyGridMask(CArray<bool,N>& gridMask, const CArray<int,1>& indexToModify, bool valueToModify) |
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[1642] | 567 | TRY |
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[1460] | 568 | { |
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[623] | 569 | int num = indexToModify.numElements(); |
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| 570 | for (int idx = 0; idx < num; ++idx) |
---|
| 571 | { |
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| 572 | *(gridMask.dataFirst()+indexToModify(idx)) = valueToModify; |
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| 573 | } |
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| 574 | } |
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[1642] | 575 | CATCH_DUMP_ATTR |
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| 576 | |
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[219] | 577 | ///-------------------------------------------------------------- |
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| 578 | |
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[1460] | 579 | |
---|
| 580 | |
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[219] | 581 | // Declare/Define CGridGroup and CGridDefinition |
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| 582 | DECLARE_GROUP(CGrid); |
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| 583 | |
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| 584 | ///-------------------------------------------------------------- |
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| 585 | |
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[335] | 586 | } // namespace xios |
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[219] | 587 | |
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[591] | 588 | #endif // __XIOS_CGrid__ |
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