/* This file is part of netcdf-4, a netCDF-like interface for HDF5, or a HDF5 backend for netCDF, depending on your point of view. This file handles the nc4 user-defined type functions (i.e. compound and opaque types). Copyright 2005, University Corporation for Atmospheric Research. See the COPYRIGHT file for copying and redistribution conditions. $Id: nc4type.c,v 1.73 2010/05/25 17:54:24 dmh Exp $ */ #include "nc4internal.h" #define NUM_ATOMIC_TYPES 13 char atomic_name[NUM_ATOMIC_TYPES][NC_MAX_NAME + 1] = {"none", "byte", "char", "short", "int", "float", "double", "ubyte", "ushort", "uint", "int64", "uint64", "string"}; EXTERNL int NC4_inq_type_equal(int ncid1, nc_type typeid1, int ncid2, nc_type typeid2, int *equalp) { NC_GRP_INFO_T *grp1, *grp2; NC_TYPE_INFO_T *type1, *type2; int retval; LOG((2, "nc_inq_type_equal: ncid1 0x%x typeid1 %d ncid2 0x%x typeid2 %d", ncid1, typeid1, ncid2, typeid2)); /* Check input. */ if(equalp == NULL) return NC_NOERR; if (typeid1 <= NC_NAT || typeid2 <= NC_NAT) return NC_EINVAL; /* If one is atomic, and the other user-defined, the types are not * equal. */ if ((typeid1 <= NC_STRING && typeid2 > NC_STRING) || (typeid2 <= NC_STRING && typeid1 > NC_STRING)) { if (equalp) *equalp = 0; return NC_NOERR; } /* If both are atomic types, the answer is easy. */ if (typeid1 <= NUM_ATOMIC_TYPES) { if (equalp) { if (typeid1 == typeid2) *equalp = 1; else *equalp = 0; } return NC_NOERR; } /* Not atomic types - so find type1 and type2 information. */ if ((retval = nc4_find_nc4_grp(ncid1, &grp1))) return retval; if (!(type1 = nc4_rec_find_nc_type(grp1->file->nc4_info->root_grp, typeid1))) return NC_EBADTYPE; if ((retval = nc4_find_nc4_grp(ncid2, &grp2))) return retval; if (!(type2 = nc4_rec_find_nc_type(grp2->file->nc4_info->root_grp, typeid2))) return NC_EBADTYPE; /* Are the two types equal? */ if (equalp) *equalp = (int)H5Tequal(type1->native_typeid, type2->native_typeid); return NC_NOERR; } /* Get the id of a type from the name. */ EXTERNL int NC4_inq_typeid(int ncid, const char *name, nc_type *typeidp) { NC_GRP_INFO_T *grp, *grp2; NC_HDF5_FILE_INFO_T *h5; NC_TYPE_INFO_T *type = NULL; char *norm_name; int i, retval; for (i = 0; i < NUM_ATOMIC_TYPES; i++) if (!strcmp(name, atomic_name[i])) { if (typeidp) *typeidp = i; return NC_NOERR; } /* Find info for this file and group, and set pointer to each. */ if ((retval = nc4_find_grp_h5(ncid, &grp, &h5))) return retval; /* Must be a netCDF-4 file. */ if (!h5) return NC_ENOTNC4; /* If the first char is a /, this is a fully-qualified * name. Otherwise, this had better be a local name (i.e. no / in * the middle). */ if (name[0] != '/' && strstr(name, "/")) return NC_EINVAL; /* Normalize name. */ if (!(norm_name = malloc(strlen(name) + 1))) return NC_ENOMEM; if ((retval = nc4_normalize_name(name, norm_name))) return retval; /* Is the type in this group? If not, search parents. */ for (grp2 = grp; grp2; grp2 = grp2->parent) for (type = grp2->type; type; type = type->next) if (!strcmp(norm_name, type->name)) { if (typeidp) *typeidp = type->nc_typeid; break; } /* Still didn't find type? Search file recursively, starting at the * root group. */ if (!type) if ((type = nc4_rec_find_named_type(grp->file->nc4_info->root_grp, norm_name))) if (typeidp) *typeidp = type->nc_typeid; free(norm_name); /* OK, I give up already! */ if (!type) return NC_EBADTYPE; return NC_NOERR; } /* Find all user-defined types for a location. This finds all * user-defined types in a group. */ int NC4_inq_typeids(int ncid, int *ntypes, int *typeids) { NC_GRP_INFO_T *grp; NC_HDF5_FILE_INFO_T *h5; NC_TYPE_INFO_T *type; int num = 0; int retval; LOG((2, "nc_inq_typeids: ncid 0x%x", ncid)); /* Find info for this file and group, and set pointer to each. */ if ((retval = nc4_find_grp_h5(ncid, &grp, &h5))) return retval; /* If this is a netCDF-4 file, count types. */ if (h5 && grp->type) for (type = grp->type; type; type = type->next) { if (typeids) typeids[num] = type->nc_typeid; num++; } /* Give the count to the user. */ if (ntypes) *ntypes = num; return NC_NOERR; } /* This internal function adds a new user defined type to the metadata * of a group of an open file. */ static int add_user_type(int ncid, size_t size, const char *name, nc_type base_typeid, nc_type type_class, nc_type *typeidp) { NC_HDF5_FILE_INFO_T *h5; NC_GRP_INFO_T *grp; NC_TYPE_INFO_T *type; char norm_name[NC_MAX_NAME + 1]; int retval; /* Check and normalize the name. */ if ((retval = nc4_check_name(name, norm_name))) return retval; LOG((2, "add_user_type: ncid 0x%x size %d name %s base_typeid %d ", ncid, size, norm_name, base_typeid)); /* Find group metadata. */ if ((retval = nc4_find_grp_h5(ncid, &grp, &h5))) return retval; /* Only netcdf-4 files! */ if (!h5) return NC_ENOTNC4; /* Turn on define mode if it is not on. */ if (!(h5->cmode & NC_INDEF)) if ((retval = nc_redef(ncid))) return retval; /* No size is provided for vlens or enums, get it from the base type. */ if (type_class == NC_VLEN || type_class == NC_ENUM) { if ((retval = nc4_get_typelen_mem(grp->file->nc4_info, base_typeid, 0, &size))) return retval; } else if (size <= 0) return NC_EINVAL; /* Check that this name is not in use as a var, grp, or type. */ if ((retval = nc4_check_dup_name(grp, norm_name))) return retval; /* Add to our list of types. */ if ((retval = nc4_type_list_add(&(grp->type), &type))) return retval; /* Remember info about this type. */ type->nc_typeid = grp->file->nc4_info->next_typeid++; type->size = size; if (!(type->name = malloc((strlen(norm_name) + 1) * sizeof(char)))) return NC_ENOMEM; strcpy(type->name, norm_name); type->class = type_class; type->base_nc_type = base_typeid; /* Return the typeid to the user. */ if (typeidp) *typeidp = type->nc_typeid; return NC_NOERR; } /* The sizes of types may vary from platform to platform, but within * netCDF files, type sizes are fixed. */ #define NC_CHAR_LEN sizeof(char) #define NC_STRING_LEN sizeof(char *) #define NC_BYTE_LEN 1 #define NC_SHORT_LEN 2 #define NC_INT_LEN 4 #define NC_FLOAT_LEN 4 #define NC_DOUBLE_LEN 8 #define NC_INT64_LEN 8 /* Get the name and size of a type. For strings, 1 is returned. For * VLEN the base type len is returned. */ int NC4_inq_type(int ncid, nc_type typeid, char *name, size_t *size) { NC_GRP_INFO_T *grp; NC_TYPE_INFO_T *type; int atomic_size[NUM_ATOMIC_TYPES] = {0, NC_BYTE_LEN, NC_CHAR_LEN, NC_SHORT_LEN, NC_INT_LEN, NC_FLOAT_LEN, NC_DOUBLE_LEN, NC_BYTE_LEN, NC_SHORT_LEN, NC_INT_LEN, NC_INT64_LEN, NC_INT64_LEN, NC_STRING_LEN}; int retval; LOG((2, "nc_inq_type: ncid 0x%x typeid %d", ncid, typeid)); /* If this is an atomic type, the answer is easy. */ if (typeid <= NUM_ATOMIC_TYPES) { if (name) strcpy(name, atomic_name[typeid]); if (size) *size = atomic_size[typeid]; return NC_NOERR; } /* Not an atomic type - so find group. */ if ((retval = nc4_find_nc4_grp(ncid, &grp))) return retval; /* Find this type. */ if (!(type = nc4_rec_find_nc_type(grp->file->nc4_info->root_grp, typeid))) return NC_EBADTYPE; if (name) strcpy(name, type->name); if (size) { if (type->class != NC_VLEN) *size = type->size; else *size = sizeof(nc_vlen_t); } return NC_NOERR; } /* Create a compound type. */ int NC4_def_compound(int ncid, size_t size, const char *name, nc_type *typeidp) { return add_user_type(ncid, size, name, 0, NC_COMPOUND, typeidp); } /* Insert a named field into a compound type. */ int NC4_insert_compound(int ncid, nc_type typeid, const char *name, size_t offset, nc_type field_typeid) { return nc_insert_array_compound(ncid, typeid, name, offset, field_typeid, 0, NULL); } /* Insert a named array into a compound type. */ EXTERNL int NC4_insert_array_compound(int ncid, int typeid, const char *name, size_t offset, nc_type field_typeid, int ndims, const int *dim_sizesp) { NC_GRP_INFO_T *grp; NC_TYPE_INFO_T *type; char norm_name[NC_MAX_NAME + 1]; int retval; LOG((2, "nc_insert_array_compound: ncid 0x%x, typeid %d name %s " "offset %d field_typeid %d ndims %d", ncid, typeid, name, offset, field_typeid, ndims)); /* Check and normalize the name. */ if ((retval = nc4_check_name(name, norm_name))) return retval; /* Find file metadata. */ if ((retval = nc4_find_nc4_grp(ncid, &grp))) return retval; /* Find type metadata. */ if ((retval = nc4_find_type(grp->file->nc4_info, typeid, &type))) return retval; /* Did the user give us a good compound type typeid? */ if (!type || type->class != NC_COMPOUND) return NC_EBADTYPE; /* If this type has already been written to the file, you can't * change it. */ if (type->committed) return NC_ETYPDEFINED; /* Insert new field into this type's list of fields. */ if ((retval = nc4_field_list_add(&type->field, type->num_fields, norm_name, offset, 0, 0, field_typeid, ndims, dim_sizesp))) return retval; type->num_fields++; return NC_NOERR; } /* Find info about any user defined type. */ int NC4_inq_user_type(int ncid, nc_type typeid, char *name, size_t *size, nc_type *base_nc_typep, size_t *nfieldsp, int *classp) { NC_GRP_INFO_T *grp; NC_TYPE_INFO_T *type; NC_FIELD_INFO_T *field; int retval; LOG((2, "nc_inq_user_type: ncid 0x%x typeid %d", ncid, typeid)); /* Find group metadata. */ if ((retval = nc4_find_nc4_grp(ncid, &grp))) return retval; /* Find this type. */ if (!(type = nc4_rec_find_nc_type(grp->file->nc4_info->root_grp, typeid))) return NC_EBADTYPE; /* Count the number of fields. */ if (nfieldsp) { *nfieldsp = 0; if (type->class == NC_COMPOUND) for (field = type->field; field; field = field->next) (*nfieldsp)++; else if (type->class == NC_ENUM) *nfieldsp = type->num_enum_members; } /* Fill in size and name info, if desired. */ if (size) { if (type->class != NC_VLEN) *size = type->size; else *size = sizeof(nc_vlen_t); } if (name) strcpy(name, type->name); /* VLENS and ENUMs have a base type - that is, they type they are * arrays of or enums of. */ if (base_nc_typep) *base_nc_typep = type->base_nc_type; /* If the user wants it, tell whether this is a compound, opaque, * vlen, enum, or string class of type. */ if (classp) *classp = type->class; return NC_NOERR; } /* Given the ncid, typeid and fieldid, get info about the field. */ int NC4_inq_compound_field(int ncid, nc_type typeid, int fieldid, char *name, size_t *offsetp, nc_type *field_typeidp, int *ndimsp, int *dim_sizesp) { NC_GRP_INFO_T *grp; NC_TYPE_INFO_T *type; NC_FIELD_INFO_T *field; int d, retval; /* Find file metadata. */ if ((retval = nc4_find_nc4_grp(ncid, &grp))) return retval; /* Find this type. */ if (!(type = nc4_rec_find_nc_type(grp->file->nc4_info->root_grp, typeid))) return NC_EBADTYPE; /* Find the field. */ for (field = type->field; field; field = field->next) if (field->fieldid == fieldid) { if (name) strcpy(name, field->name); if (offsetp) *offsetp = field->offset; if (field_typeidp) *field_typeidp = field->nctype; if (ndimsp) *ndimsp = field->ndims; if (dim_sizesp) for (d = 0; d < field->ndims; d++) dim_sizesp[d] = field->dim_size[d]; return NC_NOERR; } return NC_EBADFIELD; } /* Find a netcdf-4 file. THis will return an error if it finds a * netcdf-3 file, or a netcdf-4 file with strict nc3 rules. */ static int find_nc4_file(int ncid, NC_FILE_INFO_T **nc) { /* Find file metadata. */ if (!((*nc) = nc4_find_nc_file(ncid))) return NC_EBADID; /* Check for netcdf-3 files or netcdf-3 rules. */ if (!(*nc)->nc4_info) return NC_ENOTNC4; if ((*nc)->nc4_info->cmode & NC_CLASSIC_MODEL) return NC_ESTRICTNC3; return NC_NOERR; } /* Given the typeid and the name, get the fieldid. */ int NC4_inq_compound_fieldindex(int ncid, nc_type typeid, const char *name, int *fieldidp) { NC_FILE_INFO_T *nc; NC_TYPE_INFO_T *type; NC_FIELD_INFO_T *field; char norm_name[NC_MAX_NAME + 1]; int retval; LOG((2, "nc_inq_compound_fieldindex: ncid 0x%x typeid %d name %s", ncid, typeid, name)); /* Find file metadata. */ if ((retval = find_nc4_file(ncid, &nc))) return retval; /* Find the type. */ if ((retval = nc4_find_type(nc->nc4_info, typeid, &type))) return retval; /* Did the user give us a good compound type typeid? */ if (!type || type->class != NC_COMPOUND) return NC_EBADTYPE; /* Normalize name. */ if ((retval = nc4_normalize_name(name, norm_name))) return retval; /* Find the field with this name. */ for (field = type->field; field; field = field->next) if (!strcmp(field->name, norm_name)) break; if (!field) return NC_EBADFIELD; if (fieldidp) *fieldidp = field->fieldid; return NC_NOERR; } /* Opaque type. */ /* Create an opaque type. Provide a size and a name. */ int NC4_def_opaque(int ncid, size_t datum_size, const char *name, nc_type *typeidp) { return add_user_type(ncid, datum_size, name, 0, NC_OPAQUE, typeidp); } /* Define a variable length type. */ int NC4_def_vlen(int ncid, const char *name, nc_type base_typeid, nc_type *typeidp) { return add_user_type(ncid, 0, name, base_typeid, NC_VLEN, typeidp); } /* Create an enum type. Provide a base type and a name. At the moment * only ints are accepted as base types. */ int NC4_def_enum(int ncid, nc_type base_typeid, const char *name, nc_type *typeidp) { return add_user_type(ncid, 0, name, base_typeid, NC_ENUM, typeidp); } /* Get enum name from enum value. Name size will be <= NC_MAX_NAME. */ int NC4_inq_enum_ident(int ncid, nc_type xtype, long long value, char *identifier) { NC_GRP_INFO_T *grp; NC_TYPE_INFO_T *type; NC_ENUM_MEMBER_INFO_T *enum_member; long long ll_val; int i; int retval; LOG((3, "nc_inq_enum_ident: xtype %d value %d\n", xtype, value)); /* Find group metadata. */ if ((retval = nc4_find_nc4_grp(ncid, &grp))) return retval; /* Find this type. */ if (!(type = nc4_rec_find_nc_type(grp->file->nc4_info->root_grp, xtype))) return NC_EBADTYPE; /* Complain if they are confused about the type. */ if (type->class != NC_ENUM) return NC_EBADTYPE; /* Move to the desired enum member in the list. */ enum_member = type->enum_member; for (i = 0; i < type->num_enum_members; i++) { switch (type->base_nc_type) { case NC_BYTE: ll_val = *(char *)enum_member->value; break; case NC_UBYTE: ll_val = *(unsigned char *)enum_member->value; break; case NC_SHORT: ll_val = *(short *)enum_member->value; break; case NC_USHORT: ll_val = *(unsigned short *)enum_member->value; break; case NC_INT: ll_val = *(int *)enum_member->value; break; case NC_UINT: ll_val = *(unsigned int *)enum_member->value; break; case NC_INT64: case NC_UINT64: ll_val = *(long long *)enum_member->value; break; default: return NC_EINVAL; } LOG((4, "ll_val=%d", ll_val)); if (ll_val == value) { if (identifier) strcpy(identifier, enum_member->name); break; } else enum_member = enum_member->next; } /* If we didn't find it, life sucks for us. :-( */ if (i == type->num_enum_members) return NC_EINVAL; return NC_NOERR; } /* Get information about an enum member: an identifier and * value. Identifier size will be <= NC_MAX_NAME. */ int NC4_inq_enum_member(int ncid, nc_type typeid, int idx, char *identifier, void *value) { NC_GRP_INFO_T *grp; NC_TYPE_INFO_T *type; NC_ENUM_MEMBER_INFO_T *enum_member; int i; int retval; LOG((2, "nc_inq_enum_member: ncid 0x%x typeid %d", ncid, typeid)); /* Find group metadata. */ if ((retval = nc4_find_nc4_grp(ncid, &grp))) return retval; /* Find this type. */ if (!(type = nc4_rec_find_nc_type(grp->file->nc4_info->root_grp, typeid))) return NC_EBADTYPE; /* Complain if they are confused about the type. */ if (type->class != NC_ENUM) return NC_EBADTYPE; /* Check index. */ if (idx >= type->num_enum_members) return NC_EINVAL; /* Move to the desired enum member in the list. */ enum_member = type->enum_member; for (i = 0; i < idx; i++) enum_member = enum_member->next; /* Give the people what they want. */ if (identifier) strcpy(identifier, enum_member->name); if (value) memcpy(value, enum_member->value, type->size); return NC_NOERR; } /* Insert a identifierd value into an enum type. The value must fit within * the size of the enum type, the identifier size must be <= NC_MAX_NAME. */ int NC4_insert_enum(int ncid, nc_type typeid, const char *identifier, const void *value) { NC_GRP_INFO_T *grp; NC_TYPE_INFO_T *type; char norm_name[NC_MAX_NAME + 1]; int retval; LOG((2, "nc_insert_enum: ncid 0x%x, typeid %d identifier %s value %d", ncid, typeid, identifier, value)); /* Check and normalize the name. */ if ((retval = nc4_check_name(identifier, norm_name))) return retval; /* Find file metadata. */ if ((retval = nc4_find_nc4_grp(ncid, &grp))) return retval; /* Find type metadata. */ if ((retval = nc4_find_type(grp->file->nc4_info, typeid, &type))) return retval; /* Did the user give us a good enum typeid? */ if (!type || type->class != NC_ENUM) return NC_EBADTYPE; /* If this type has already been written to the file, you can't * change it. */ if (type->committed) return NC_ETYPDEFINED; /* Insert new field into this type's list of fields. */ if ((retval = nc4_enum_member_add(&type->enum_member, type->size, norm_name, value))) return retval; type->num_enum_members++; return NC_NOERR; } /* Insert one element into an already allocated vlen array element. */ int NC4_put_vlen_element(int ncid, int typeid, void *vlen_element, size_t len, const void *data) { nc_vlen_t *tmp = vlen_element; tmp->len = len; tmp->p = (void *)data; return NC_NOERR; } /* Insert one element into an already allocated vlen array element. */ int NC4_get_vlen_element(int ncid, int typeid, const void *vlen_element, size_t *len, void *data) { const nc_vlen_t *tmp = vlen_element; int type_size = 4; *len = tmp->len; memcpy(data, tmp->p, tmp->len * type_size); return NC_NOERR; }