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source: XIOS/dev/dev_olga/src/io/nc4_data_output.cpp @ 1589

Last change on this file since 1589 was 1589, checked in by oabramkina, 6 years ago
Backporting r1578 and r1586 to dev, cleaning the code before merging it to XIOS 2.5.
Property copyright set to Software name : XIOS (Xml I/O Server) http://forge.ipsl.jussieu.fr/ioserver Creation date : January 2009 Licence : CeCCIL version2 see license file in root directory : Licence_CeCILL_V2-en.txt or http://www.cecill.info/licences/Licence_CeCILL_V2-en.html Holder : CEA/LSCE (Laboratoire des Sciences du CLimat et de l'Environnement) CNRS/IPSL (Institut Pierre Simon Laplace) Project Manager : Yann Meurdesoif yann.meurdesoif@cea.fr Property svn:executable set to ``*
File size: 132.0 KB

Rev	Line
[219]	1	#include "nc4_data_output.hpp"
	2
[352]	3	#include "attribute_template.hpp"
	4	#include "group_template.hpp"
[219]	5
	6	#include "file.hpp"
	7	#include "calendar.hpp"
[278]	8	#include "context.hpp"
[300]	9	#include "context_server.hpp"
[498]	10	#include "netCdfException.hpp"
	11	#include "exception.hpp"
[1158]	12	#include "timer.hpp"
	13	#include "uuid.hpp"
[335]	14	namespace xios
[219]	15	{
[878]	16	/// ////////////////////// Dfinitions ////////////////////// ///
[219]	17	CNc4DataOutput::CNc4DataOutput
[1158]	18	(CFile* file, const StdString & filename, bool exist)
[219]	19	: SuperClass()
	20	, SuperClassWriter(filename, exist)
	21	, filename(filename)
[1158]	22	, file(file),hasTimeInstant(false),hasTimeCentered(false), timeCounterType(none)
[219]	23	{
[1158]	24	SuperClass::type = MULTI_FILE;
[1456]	25	compressionLevel= file->compression_level.isEmpty() ? 0 :file->compression_level ;
[219]	26	}
	27
	28	CNc4DataOutput::CNc4DataOutput
[1158]	29	(CFile* file, const StdString & filename, bool exist, bool useClassicFormat, bool useCFConvention,
[924]	30	MPI_Comm comm_file, bool multifile, bool isCollective, const StdString& timeCounterName)
[219]	31	: SuperClass()
[878]	32	, SuperClassWriter(filename, exist, useClassicFormat, useCFConvention, &comm_file, multifile, timeCounterName)
[379]	33	, comm_file(comm_file)
[219]	34	, filename(filename)
[335]	35	, isCollective(isCollective)
[1158]	36	, file(file),hasTimeInstant(false),hasTimeCentered(false), timeCounterType(none)
[219]	37	{
[1158]	38	SuperClass::type = (multifile) ? MULTI_FILE : ONE_FILE;
[1459]	39	if (file==NULL) compressionLevel = 0 ;
	40	else compressionLevel= file->compression_level.isEmpty() ? 0 :file->compression_level ;
[219]	41	}
	42
	43	CNc4DataOutput::~CNc4DataOutput(void)
[879]	44	{ /* Ne rien faire de plus */ }
[219]	45
	46	///--------------------------------------------------------------
	47
	48	const StdString & CNc4DataOutput::getFileName(void) const
	49	{
	50	return (this->filename);
	51	}
	52
	53	//---------------------------------------------------------------
	54
[347]	55	void CNc4DataOutput::writeDomain_(CDomain* domain)
[219]	56	{
[1391]	57	StdString lonName,latName ;
[1571]	58
[1129]	59	domain->computeWrittenIndex();
[1249]	60	domain->computeWrittenCompressedIndex(comm_file);
	61
[881]	62	if (domain->type == CDomain::type_attr::unstructured)
	63	{
	64	if (SuperClassWriter::useCFConvention)
	65	writeUnstructuredDomain(domain) ;
	66	else
	67	writeUnstructuredDomainUgrid(domain) ;
	68	return ;
	69	}
[488]	70
[347]	71	CContext* context = CContext::getCurrent() ;
[300]	72	CContextServer* server=context->server ;
[488]	73
[219]	74	if (domain->IsWritten(this->filename)) return;
	75	domain->checkAttributes();
[488]	76
	77	if (domain->isEmpty())
[881]	78	if (SuperClass::type==MULTI_FILE) return;
[219]	79
	80	std::vector<StdString> dim0, dim1;
[772]	81	StdString domid = domain->getDomainOutputName();
[318]	82	StdString appendDomid = (singleDomain) ? "" : "_"+domid ;
[706]	83	if (isWrittenDomain(domid)) return ;
[774]	84	else setWrittenDomain(domid);
[1132]	85
	86	int nvertex = (domain->nvertex.isEmpty()) ? 0 : domain->nvertex;
[449]	87
[488]	88
[1158]	89	StdString dimXid, dimYid ;
	90
	91	nc_type typePrec ;
	92	if (domain->prec.isEmpty()) typePrec = NC_FLOAT ;
	93	else if (domain->prec==4) typePrec = NC_FLOAT ;
	94	else if (domain->prec==8) typePrec = NC_DOUBLE ;
	95
[664]	96	bool isRegularDomain = (domain->type == CDomain::type_attr::rectilinear);
[449]	97	switch (domain->type)
[433]	98	{
[449]	99	case CDomain::type_attr::curvilinear :
[1391]	100
	101	if (domain->lon_name.isEmpty()) lonName = "nav_lon";
	102	else lonName = domain->lon_name;
	103
	104	if (domain->lat_name.isEmpty()) latName = "nav_lat";
	105	else latName = domain->lat_name;
	106
[1430]	107	if (domain->dim_i_name.isEmpty()) dimXid=StdString("x").append(appendDomid);
	108	else dimXid=domain->dim_i_name.getValue() + appendDomid;
	109
	110	if (domain->dim_j_name.isEmpty()) dimYid=StdString("y").append(appendDomid);
	111	else dimYid=domain->dim_j_name.getValue() + appendDomid;
	112
[449]	113	break ;
[1391]	114
[664]	115	case CDomain::type_attr::rectilinear :
[1391]	116
[1430]	117	if (domain->lon_name.isEmpty())
	118	{
	119	if (domain->dim_i_name.isEmpty())
	120	lonName = "lon";
	121	else
	122	lonName = domain->dim_i_name.getValue();
	123	}
[1391]	124	else lonName = domain->lon_name;
	125
[1430]	126	if (domain->lat_name.isEmpty())
	127	{
	128	if (domain->dim_j_name.isEmpty())
	129	latName = "lat";
	130	else
	131	latName = domain->dim_j_name.getValue();
	132	}
[1391]	133	else latName = domain->lat_name;
	134
[1430]	135	if (domain->dim_i_name.isEmpty()) dimXid = lonName+appendDomid;
	136	else dimXid = domain->dim_i_name.getValue()+appendDomid;
	137
	138	if (domain->dim_j_name.isEmpty()) dimYid = latName+appendDomid;
	139	else dimYid = domain->dim_j_name.getValue()+appendDomid;
[449]	140	break;
[488]	141	}
	142
[617]	143	StdString dimVertId = StdString("nvertex").append(appendDomid);
	144
[449]	145	string lonid,latid,bounds_lonid,bounds_latid ;
[611]	146	string areaId = "area" + appendDomid;
[391]	147	/*
[300]	148	StdString lonid_loc = (server->intraCommSize > 1)
[318]	149	? StdString("lon").append(appendDomid).append("_local")
[278]	150	: lonid;
[300]	151	StdString latid_loc = (server->intraCommSize > 1)
[318]	152	? StdString("lat").append(appendDomid).append("_local")
[278]	153	: latid;
[391]	154	*/
[219]	155
[1571]	156	CArray<int, 1>& indexToWrite = domain->localIndexToWriteOnServer;
[1129]	157	int nbWritten = indexToWrite.numElements();
	158	CArray<double,1> writtenLat, writtenLon;
	159	CArray<double,2> writtenBndsLat, writtenBndsLon;
	160	CArray<double,1> writtenArea;
	161
	162	if (domain->hasLonLat)
	163	{
	164	writtenLat.resize(nbWritten);
	165	writtenLon.resize(nbWritten);
	166	for (int idx = 0; idx < nbWritten; ++idx)
	167	{
[1589]	168	if (indexToWrite(idx) < 0)
	169	{
	170	writtenLat(idx) = -1.; // hole
	171	writtenLon(idx) = -1.;
	172	}
	173	else
	174	{
	175	writtenLat(idx) = domain->latvalue(indexToWrite(idx));
	176	writtenLon(idx) = domain->lonvalue(indexToWrite(idx));
	177	}
[1129]	178	}
	179
	180	if (domain->hasBounds)
	181	{
	182	int nvertex = domain->nvertex, idx;
	183	writtenBndsLat.resize(nvertex, nbWritten);
	184	writtenBndsLon.resize(nvertex, nbWritten);
	185	CArray<double,2>& boundslat = domain->bounds_latvalue;
	186	CArray<double,2>& boundslon = domain->bounds_lonvalue;
	187	for (idx = 0; idx < nbWritten; ++idx)
	188	for (int nv = 0; nv < nvertex; ++nv)
	189	{
[1571]	190	if (indexToWrite(idx) < 0)
	191	{
	192	writtenBndsLat(nv, idx) = -1.; // hole
	193	writtenBndsLon(nv, idx) = -1.;
	194	}
	195	else
	196	{
[1390]	197	writtenBndsLat(nv, idx) = boundslat(nv, int(indexToWrite(idx)));
	198	writtenBndsLon(nv, idx) = boundslon(nv, int(indexToWrite(idx)));
[1571]	199	}
[1129]	200	}
	201	}
	202	}
	203
	204	if (domain->hasArea)
	205	{
	206	writtenArea.resize(nbWritten);
	207	for (int idx = 0; idx < nbWritten; ++idx)
	208	{
[1571]	209	if (indexToWrite(idx) < 0)
	210	writtenArea(idx) = -1.;
[1390]	211	else
[1571]	212	writtenArea(idx) = domain->areavalue(indexToWrite(idx));
[1129]	213	}
	214	}
	215
[498]	216	try
[219]	217	{
[498]	218	switch (SuperClass::type)
	219	{
	220	case (MULTI_FILE) :
	221	{
	222	switch (domain->type)
	223	{
	224	case CDomain::type_attr::curvilinear :
	225	dim0.push_back(dimYid); dim0.push_back(dimXid);
[1415]	226	lonid = lonName+appendDomid;
	227	latid = latName+appendDomid;
[498]	228	break ;
[664]	229	case CDomain::type_attr::rectilinear :
[1415]	230	lonid = lonName+appendDomid;
	231	latid = latName+appendDomid;
[498]	232	dim0.push_back(dimYid);
	233	dim1.push_back(dimXid);
	234	break;
	235	}
[1430]	236	if (!domain->bounds_lon_name.isEmpty()) bounds_lonid = domain->bounds_lon_name;
	237	else bounds_lonid = "bounds_"+lonName+appendDomid;
	238	if (!domain->bounds_lat_name.isEmpty()) bounds_latid = domain->bounds_lat_name;
	239	else bounds_latid = "bounds_"+latName+appendDomid;
[488]	240
[1553]	241	SuperClassWriter::addDimension(dimXid, domain->ni);
	242	SuperClassWriter::addDimension(dimYid, domain->nj);
[488]	243
[617]	244	if (domain->hasBounds)
	245	SuperClassWriter::addDimension(dimVertId, domain->nvertex);
	246
[498]	247	if (server->intraCommSize > 1)
	248	{
[1553]	249	this->writeLocalAttributes(domain->ibegin,
	250	domain->ni,
	251	domain->jbegin,
	252	domain->nj,
[616]	253	appendDomid);
[488]	254
[628]	255	if (singleDomain)
	256	this->writeLocalAttributes_IOIPSL(dimXid, dimYid,
[1553]	257	domain->ibegin,
	258	domain->ni,
	259	domain->jbegin,
	260	domain->nj,
[628]	261	domain->ni_glo,domain->nj_glo,
	262	server->intraCommRank,server->intraCommSize);
[449]	263	}
[488]	264
[665]	265	if (domain->hasLonLat)
[498]	266	{
[665]	267	switch (domain->type)
	268	{
	269	case CDomain::type_attr::curvilinear :
[1456]	270	SuperClassWriter::addVariable(latid, typePrec, dim0, compressionLevel);
	271	SuperClassWriter::addVariable(lonid, typePrec, dim0, compressionLevel);
[665]	272	break ;
	273	case CDomain::type_attr::rectilinear :
[1456]	274	SuperClassWriter::addVariable(latid, typePrec, dim0, compressionLevel);
	275	SuperClassWriter::addVariable(lonid, typePrec, dim1, compressionLevel);
[665]	276	break ;
	277	}
[488]	278
[665]	279	this->writeAxisAttributes(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid);
	280	this->writeAxisAttributes(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid);
[219]	281
[665]	282	if (domain->hasBounds)
	283	{
	284	SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid);
	285	SuperClassWriter::addAttribute("bounds", bounds_latid, &latid);
[617]	286
[665]	287	dim0.clear();
	288	dim0.push_back(dimYid);
	289	dim0.push_back(dimXid);
	290	dim0.push_back(dimVertId);
[1456]	291	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0, compressionLevel);
	292	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0, compressionLevel);
[665]	293	}
[617]	294	}
	295
[498]	296	dim0.clear();
[616]	297	dim0.push_back(dimYid);
[498]	298	dim0.push_back(dimXid);
[219]	299
	300
[498]	301	// supress mask if (server->intraCommSize > 1)
	302	// supress mask {
	303	// supress mask SuperClassWriter::addVariable(maskid, NC_INT, dim0);
	304	// supress mask
	305	// supress mask this->writeMaskAttributes(maskid,
	306	// supress mask domain->data_dim.getValue()/*,
	307	// supress mask domain->data_ni.getValue(),
	308	// supress mask domain->data_nj.getValue(),
	309	// supress mask domain->data_ibegin.getValue(),
	310	// supress mask domain->data_jbegin.getValue()*/);
	311	// supress mask }
[488]	312
[498]	313	//SuperClassWriter::setDefaultValue(maskid, &dvm);
[219]	314
[611]	315	if (domain->hasArea)
	316	{
[1456]	317	SuperClassWriter::addVariable(areaId, typePrec, dim0, compressionLevel);
[614]	318	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
[611]	319	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
	320	}
	321
[498]	322	SuperClassWriter::definition_end();
[449]	323
[665]	324	if (domain->hasLonLat)
[498]	325	{
[665]	326	switch (domain->type)
	327	{
[1129]	328	case CDomain::type_attr::curvilinear :
	329	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0);
	330	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0);
[665]	331	break;
	332	case CDomain::type_attr::rectilinear :
[1553]	333	CArray<double,1> lat = writtenLat(Range(fromStart,toEnd,domain->ni)) ;
[665]	334	SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0);
[1553]	335	CArray<double,1> lon = writtenLon(Range(0,domain->ni-1)) ;
[665]	336	SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0);
	337	break;
	338	}
[611]	339
[665]	340	if (domain->hasBounds)
	341	{
[1129]	342	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0);
	343	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0);
[665]	344	}
[617]	345	}
	346
[611]	347	if (domain->hasArea)
[1129]	348	{
[1132]	349	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0);
[1129]	350	}
	351
[498]	352	SuperClassWriter::definition_start();
[219]	353
[498]	354	break;
	355	}
	356	case (ONE_FILE) :
	357	{
[1553]	358	SuperClassWriter::addDimension(dimXid, domain->ni_glo);
	359	SuperClassWriter::addDimension(dimYid, domain->nj_glo);
[286]	360
[617]	361	if (domain->hasBounds)
	362	SuperClassWriter::addDimension(dimVertId, domain->nvertex);
	363
[665]	364	if (domain->hasLonLat)
[498]	365	{
[665]	366	switch (domain->type)
	367	{
	368	case CDomain::type_attr::curvilinear :
	369	dim0.push_back(dimYid); dim0.push_back(dimXid);
[1415]	370	lonid = lonName+appendDomid;
	371	latid = latName+appendDomid;
[1456]	372	SuperClassWriter::addVariable(latid, typePrec, dim0, compressionLevel);
	373	SuperClassWriter::addVariable(lonid, typePrec, dim0, compressionLevel);
[665]	374	break;
[449]	375
[665]	376	case CDomain::type_attr::rectilinear :
	377	dim0.push_back(dimYid);
	378	dim1.push_back(dimXid);
[1415]	379	lonid = lonName+appendDomid;
	380	latid = latName+appendDomid;
[1456]	381	SuperClassWriter::addVariable(latid, typePrec, dim0, compressionLevel);
	382	SuperClassWriter::addVariable(lonid, typePrec, dim1, compressionLevel);
[665]	383	break;
	384	}
[1430]	385	if (!domain->bounds_lon_name.isEmpty()) bounds_lonid = domain->bounds_lon_name;
	386	else bounds_lonid = "bounds_"+lonName+appendDomid;
	387	if (!domain->bounds_lat_name.isEmpty()) bounds_latid = domain->bounds_lat_name;
	388	else bounds_latid = "bounds_"+latName+appendDomid;
[665]	389
	390	this->writeAxisAttributes
	391	(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid);
	392	this->writeAxisAttributes
	393	(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid);
	394
	395	if (domain->hasBounds)
	396	{
	397	SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid);
	398	SuperClassWriter::addAttribute("bounds", bounds_latid, &latid);
	399
	400	dim0.clear();
[498]	401	dim0.push_back(dimYid);
[665]	402	dim0.push_back(dimXid);
	403	dim0.push_back(dimVertId);
[1456]	404	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0, compressionLevel);
	405	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0, compressionLevel);
[665]	406	}
[498]	407	}
[611]	408
	409	if (domain->hasArea)
	410	{
	411	dim0.clear();
	412	dim0.push_back(dimYid); dim0.push_back(dimXid);
[1456]	413	SuperClassWriter::addVariable(areaId, typePrec, dim0, compressionLevel);
[614]	414	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
[611]	415	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
	416	dim0.clear();
	417	}
	418
	419	SuperClassWriter::definition_end();
[286]	420
[498]	421	switch (domain->type)
[384]	422	{
[498]	423	case CDomain::type_attr::curvilinear :
[449]	424	{
[498]	425	std::vector<StdSize> start(2) ;
	426	std::vector<StdSize> count(2) ;
[1571]	427	// Comment out for a moment because it is not working for a hole
	428	// if (domain->isEmpty())
	429	// {
	430	// start[0]=0 ; start[1]=0 ;
	431	// count[0]=0 ; count[1]=0 ;
	432	// }
	433	// else
[498]	434	{
[1553]	435	start[1]=domain->ibegin;
	436	start[0]=domain->jbegin;
	437	count[1]=domain->ni ; count[0]=domain->nj ;
[498]	438	}
[488]	439
[665]	440	if (domain->hasLonLat)
	441	{
[1129]	442	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count);
	443	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count);
[665]	444	}
[498]	445	break;
	446	}
[664]	447	case CDomain::type_attr::rectilinear :
[449]	448	{
[665]	449	if (domain->hasLonLat)
[498]	450	{
[665]	451	std::vector<StdSize> start(1) ;
	452	std::vector<StdSize> count(1) ;
	453	if (domain->isEmpty())
	454	{
	455	start[0]=0 ;
	456	count[0]=0 ;
[1129]	457	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count);
	458	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count);
[665]	459	}
	460	else
[1129]	461	{
[1553]	462	start[0]=domain->jbegin;
	463	count[0]=domain->nj;
	464	CArray<double,1> lat = writtenLat(Range(fromStart,toEnd,domain->ni));
[665]	465	SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0,&start,&count);
	466
[1553]	467	start[0]=domain->ibegin;
	468	count[0]=domain->ni;
	469	CArray<double,1> lon = writtenLon(Range(0,domain->ni-1));
[665]	470	SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0,&start,&count);
	471	}
[498]	472	}
	473	break;
[449]	474	}
[384]	475	}
[611]	476
[617]	477	if (domain->hasBounds)
	478	{
	479	std::vector<StdSize> start(3);
	480	std::vector<StdSize> count(3);
	481	if (domain->isEmpty())
	482	{
	483	start[2] = start[1] = start[0] = 0;
	484	count[2] = count[1] = count[0] = 0;
	485	}
	486	else
	487	{
	488	start[2] = 0;
[1553]	489	start[1] = domain->ibegin;
	490	start[0] = domain->jbegin;
[1099]	491	count[2] = domain->nvertex;
[1553]	492	count[1] = domain->ni;
	493	count[0] = domain->nj;
[617]	494	}
[1143]	495
[1129]	496	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0, &start, &count);
	497	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0, &start, &count);
[617]	498	}
	499
[611]	500	if (domain->hasArea)
	501	{
	502	std::vector<StdSize> start(2);
	503	std::vector<StdSize> count(2);
	504
	505	if (domain->isEmpty())
	506	{
	507	start[0] = 0; start[1] = 0;
	508	count[0] = 0; count[1] = 0;
	509	}
	510	else
	511	{
[1553]	512	start[1] = domain->ibegin;
	513	start[0] = domain->jbegin;
	514	count[1] = domain->ni;
	515	count[0] = domain->nj;
[611]	516	}
[1143]	517
[1129]	518	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0, &start, &count);
[611]	519	}
	520
[498]	521	SuperClassWriter::definition_start();
	522	break;
	523	}
	524	default :
	525	ERROR("CNc4DataOutput::writeDomain(domain)",
	526	<< "[ type = " << SuperClass::type << "]"
	527	<< " not implemented yet !");
	528	}
[449]	529	}
[498]	530	catch (CNetCdfException& e)
	531	{
	532	StdString msg("On writing the domain : ");
	533	msg.append(domid); msg.append("\n");
	534	msg.append("In the context : ");
	535	msg.append(context->getId()); msg.append("\n");
	536	msg.append(e.what());
	537	ERROR("CNc4DataOutput::writeDomain_(CDomain* domain)", << msg);
	538	}
	539
[449]	540	domain->addRelFile(this->filename);
	541	}
	542
[879]	543	//--------------------------------------------------------------
[878]	544
[879]	545	void CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain)
	546	{
	547	CContext* context = CContext::getCurrent() ;
	548	CContextServer* server=context->server ;
[878]	549
[879]	550	if (domain->IsWritten(this->filename)) return;
[1494]	551
	552	StdString domid = domain->getDomainOutputName();
	553
	554	// The first domain for the same mesh that will be written is that with the highest value of nvertex.
	555	// Thus the entire mesh connectivity will be generated at once.
	556	if (isWrittenDomain(domid)) return ;
	557	else setWrittenDomain(domid);
	558
[879]	559	domain->checkAttributes();
	560	if (domain->isEmpty())
	561	if (SuperClass::type==MULTI_FILE) return ;
[878]	562
[1158]	563	nc_type typePrec ;
	564	if (domain->prec.isEmpty()) typePrec = NC_FLOAT ;
	565	else if (domain->prec==4) typePrec = NC_FLOAT ;
	566	else if (domain->prec==8) typePrec = NC_DOUBLE ;
	567
[879]	568	std::vector<StdString> dim0;
	569	StdString domainName = domain->name;
[924]	570	domain->assignMesh(domainName, domain->nvertex);
[1025]	571	domain->mesh->createMeshEpsilon(server->intraComm, domain->lonvalue, domain->latvalue, domain->bounds_lonvalue, domain->bounds_latvalue);
[878]	572
[879]	573	StdString node_x = domainName + "_node_x";
	574	StdString node_y = domainName + "_node_y";
[878]	575
[879]	576	StdString edge_x = domainName + "_edge_x";
	577	StdString edge_y = domainName + "_edge_y";
	578	StdString edge_nodes = domainName + "_edge_nodes";
[878]	579
[879]	580	StdString face_x = domainName + "_face_x";
	581	StdString face_y = domainName + "_face_y";
	582	StdString face_nodes = domainName + "_face_nodes";
[902]	583	StdString face_edges = domainName + "_face_edges";
	584	StdString edge_faces = domainName + "_edge_face_links";
	585	StdString face_faces = domainName + "_face_links";
[878]	586
[879]	587	StdString dimNode = "n" + domainName + "_node";
	588	StdString dimEdge = "n" + domainName + "_edge";
	589	StdString dimFace = "n" + domainName + "_face";
	590	StdString dimVertex = "n" + domainName + "_vertex";
	591	StdString dimTwo = "Two";
[878]	592
[879]	593	if (!SuperClassWriter::dimExist(dimTwo)) SuperClassWriter::addDimension(dimTwo, 2);
[1494]	594	dim0.clear();
	595	SuperClassWriter::addVariable(domainName, NC_INT, dim0, compressionLevel);
	596	SuperClassWriter::addAttribute("cf_role", StdString("mesh_topology"), &domainName);
	597	SuperClassWriter::addAttribute("long_name", StdString("Topology data of 2D unstructured mesh"), &domainName);
	598	SuperClassWriter::addAttribute("topology_dimension", 2, &domainName);
	599	SuperClassWriter::addAttribute("node_coordinates", node_x + " " + node_y, &domainName);
[878]	600
[879]	601	try
	602	{
	603	switch (SuperClass::type)
	604	{
	605	case (ONE_FILE) :
	606	{
	607	// Adding nodes
	608	if (domain->nvertex == 1)
	609	{
	610	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
	611	{
[902]	612	SuperClassWriter::addDimension(dimNode, domain->ni_glo);
[879]	613	dim0.clear();
	614	dim0.push_back(dimNode);
[1456]	615	SuperClassWriter::addVariable(node_x, typePrec, dim0, compressionLevel);
[879]	616	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
[924]	617	SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x);
[879]	618	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
[1456]	619	SuperClassWriter::addVariable(node_y, typePrec, dim0, compressionLevel);
[879]	620	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
[924]	621	SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y);
[879]	622	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
	623	}
	624	} // domain->nvertex == 1
[878]	625
[879]	626	// Adding edges and nodes, if nodes have not been defined previously
	627	if (domain->nvertex == 2)
	628	{
	629	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
	630	{
[924]	631	SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo);
[879]	632	dim0.clear();
	633	dim0.push_back(dimNode);
[1456]	634	SuperClassWriter::addVariable(node_x, typePrec, dim0, compressionLevel);
[879]	635	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
[924]	636	SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x);
[879]	637	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
[1456]	638	SuperClassWriter::addVariable(node_y, typePrec, dim0, compressionLevel);
[879]	639	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
[924]	640	SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y);
[879]	641	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
	642	}
[924]	643	SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName);
	644	SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName);
	645	SuperClassWriter::addDimension(dimEdge, domain->ni_glo);
	646	dim0.clear();
	647	dim0.push_back(dimEdge);
[1456]	648	SuperClassWriter::addVariable(edge_x, typePrec, dim0, compressionLevel);
[924]	649	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x);
	650	SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x);
	651	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x);
[1456]	652	SuperClassWriter::addVariable(edge_y, typePrec, dim0, compressionLevel);
[924]	653	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y);
	654	SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y);
	655	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y);
	656	dim0.clear();
	657	dim0.push_back(dimEdge);
	658	dim0.push_back(dimTwo);
[1456]	659	SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0, compressionLevel);
[924]	660	SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes);
	661	SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes);
	662	SuperClassWriter::addAttribute("start_index", 0, &edge_nodes);
[879]	663	} // domain->nvertex == 2
[878]	664
[879]	665	// Adding faces, edges, and nodes, if edges and nodes have not been defined previously
	666	if (domain->nvertex > 2)
	667	{
	668	// Nodes
	669	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
	670	{
[924]	671	SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo);
[879]	672	dim0.clear();
	673	dim0.push_back(dimNode);
[1456]	674	SuperClassWriter::addVariable(node_x, typePrec, dim0, compressionLevel);
[879]	675	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
[924]	676	SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x);
[879]	677	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
[1456]	678	SuperClassWriter::addVariable(node_y, typePrec, dim0, compressionLevel);
[879]	679	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
[924]	680	SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y);
[879]	681	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
	682	}
	683	if (!SuperClassWriter::varExist(edge_x) \|\| !SuperClassWriter::varExist(edge_y))
	684	{
	685	SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName);
	686	SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName);
[924]	687	SuperClassWriter::addDimension(dimEdge, domain->mesh->nbEdgesGlo);
[879]	688	dim0.clear();
	689	dim0.push_back(dimEdge);
[1456]	690	SuperClassWriter::addVariable(edge_x, typePrec, dim0, compressionLevel);
[879]	691	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x);
[924]	692	SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x);
[879]	693	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x);
[1456]	694	SuperClassWriter::addVariable(edge_y, typePrec, dim0, compressionLevel);
[879]	695	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y);
[924]	696	SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y);
[879]	697	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y);
	698	dim0.clear();
	699	dim0.push_back(dimEdge);
	700	dim0.push_back(dimTwo);
[1456]	701	SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0, compressionLevel);
[879]	702	SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes);
	703	SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes);
	704	SuperClassWriter::addAttribute("start_index", 0, &edge_nodes);
	705	}
[924]	706	SuperClassWriter::addAttribute("face_coordinates", face_x + " " + face_y, &domainName);
	707	SuperClassWriter::addAttribute("face_node_connectivity", face_nodes, &domainName);
	708	SuperClassWriter::addDimension(dimFace, domain->ni_glo);
	709	SuperClassWriter::addDimension(dimVertex, domain->nvertex);
	710	dim0.clear();
	711	dim0.push_back(dimFace);
[1456]	712	SuperClassWriter::addVariable(face_x, typePrec, dim0, compressionLevel);
[924]	713	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &face_x);
	714	SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh faces."), &face_x);
	715	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &face_x);
[1456]	716	SuperClassWriter::addVariable(face_y, typePrec, dim0, compressionLevel);
[924]	717	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &face_y);
	718	SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh faces."), &face_y);
	719	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &face_y);
	720	dim0.clear();
	721	dim0.push_back(dimFace);
	722	dim0.push_back(dimVertex);
[1456]	723	SuperClassWriter::addVariable(face_nodes, NC_INT, dim0, compressionLevel);
[924]	724	SuperClassWriter::addAttribute("cf_role", StdString("face_node_connectivity"), &face_nodes);
	725	SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its corner nodes."), &face_nodes);
	726	SuperClassWriter::addAttribute("start_index", 0, &face_nodes);
	727	dim0.clear();
	728	dim0.push_back(dimFace);
	729	dim0.push_back(dimVertex);
[1456]	730	SuperClassWriter::addVariable(face_edges, NC_INT, dim0, compressionLevel);
[924]	731	SuperClassWriter::addAttribute("cf_role", StdString("face_edge_connectivity"), &face_edges);
	732	SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its edges."), &face_edges);
	733	SuperClassWriter::addAttribute("start_index", 0, &face_edges);
[929]	734	SuperClassWriter::addAttribute("_FillValue", 999999, &face_edges);
[924]	735	dim0.clear();
	736	dim0.push_back(dimEdge);
	737	dim0.push_back(dimTwo);
[1456]	738	SuperClassWriter::addVariable(edge_faces, NC_INT, dim0, compressionLevel);
[924]	739	SuperClassWriter::addAttribute("cf_role", StdString("edge_face connectivity"), &edge_faces);
	740	SuperClassWriter::addAttribute("long_name", StdString("neighbor faces for edges"), &edge_faces);
	741	SuperClassWriter::addAttribute("start_index", 0, &edge_faces);
	742	SuperClassWriter::addAttribute("_FillValue", -999, &edge_faces);
	743	SuperClassWriter::addAttribute("comment", StdString("missing neighbor faces are indicated using _FillValue"), &edge_faces);
	744	dim0.clear();
	745	dim0.push_back(dimFace);
	746	dim0.push_back(dimVertex);
[1456]	747	SuperClassWriter::addVariable(face_faces, NC_INT, dim0, compressionLevel);
[924]	748	SuperClassWriter::addAttribute("cf_role", StdString("face_face connectivity"), &face_faces);
	749	SuperClassWriter::addAttribute("long_name", StdString("Indicates which other faces neighbor each face"), &face_faces);
	750	SuperClassWriter::addAttribute("start_index", 0, &face_faces);
[929]	751	SuperClassWriter::addAttribute("_FillValue", 999999, &face_faces);
[924]	752	SuperClassWriter::addAttribute("flag_values", -1, &face_faces);
	753	SuperClassWriter::addAttribute("flag_meanings", StdString("out_of_mesh"), &face_faces);
[879]	754	} // domain->nvertex > 2
[878]	755
[879]	756	SuperClassWriter::definition_end();
[878]	757
[924]	758	std::vector<StdSize> startEdges(1) ;
	759	std::vector<StdSize> countEdges(1) ;
	760	std::vector<StdSize> startNodes(1) ;
	761	std::vector<StdSize> countNodes(1) ;
	762	std::vector<StdSize> startFaces(1) ;
	763	std::vector<StdSize> countFaces(1) ;
	764	std::vector<StdSize> startEdgeNodes(2) ;
	765	std::vector<StdSize> countEdgeNodes(2) ;
	766	std::vector<StdSize> startEdgeFaces(2) ;
	767	std::vector<StdSize> countEdgeFaces(2) ;
	768	std::vector<StdSize> startFaceConctv(2) ;
	769	std::vector<StdSize> countFaceConctv(2) ;
[902]	770
[1494]	771	if (domain->nvertex == 1)
[879]	772	{
[1494]	773	if (domain->isEmpty())
	774	{
	775	startNodes[0]=0 ;
	776	countNodes[0]=0 ;
	777	}
	778	else
	779	{
[1553]	780	startNodes[0] = domain->ibegin;
	781	countNodes[0] = domain->ni ;
[1494]	782	}
[924]	783
[1494]	784	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes);
	785	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes);
	786	}
	787	else if (domain->nvertex == 2)
	788	{
	789	if (domain->isEmpty())
	790	{
	791	startEdges[0]=0 ;
	792	countEdges[0]=0 ;
	793	startNodes[0]=0 ;
	794	countNodes[0]=0 ;
	795	startEdgeNodes[0]=0;
	796	startEdgeNodes[1]=0;
	797	countEdgeNodes[0]=0;
	798	countEdgeNodes[1]=0;
[924]	799
[1494]	800	}
	801	else
	802	{
[1553]	803	startEdges[0] = domain->ibegin;
	804	countEdges[0] = domain->ni;
[1494]	805	startNodes[0] = domain->mesh->node_start;
	806	countNodes[0] = domain->mesh->node_count;
[1553]	807	startEdgeNodes[0] = domain->ibegin;
[1494]	808	startEdgeNodes[1] = 0;
[1553]	809	countEdgeNodes[0] = domain->ni;
[1494]	810	countEdgeNodes[1] = 2;
	811	}
	812	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes);
	813	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes);
	814	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
	815	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
	816	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
	817	}
[879]	818	else
	819	{
[1494]	820	if (domain->isEmpty())
	821	{
	822	startFaces[0] = 0 ;
	823	countFaces[0] = 0 ;
	824	startNodes[0] = 0;
	825	countNodes[0] = 0;
	826	startEdges[0] = 0;
	827	countEdges[0] = 0;
	828	startEdgeFaces[0] = 0;
	829	startEdgeFaces[1] = 0;
	830	countEdgeFaces[0] = 0;
	831	countEdgeFaces[1] = 0;
	832	startFaceConctv[0] = 0;
	833	startFaceConctv[1] = 0;
	834	countFaceConctv[0] = 0;
	835	countFaceConctv[1] = 0;
	836	}
	837	else
	838	{
[1553]	839	startFaces[0] = domain->ibegin;
	840	countFaces[0] = domain->ni ;
[1494]	841	startNodes[0] = domain->mesh->node_start;
	842	countNodes[0] = domain->mesh->node_count;
	843	startEdges[0] = domain->mesh->edge_start;
	844	countEdges[0] = domain->mesh->edge_count;
	845	startEdgeNodes[0] = domain->mesh->edge_start;
	846	startEdgeNodes[1] = 0;
	847	countEdgeNodes[0] = domain->mesh->edge_count;
	848	countEdgeNodes[1]= 2;
	849	startEdgeFaces[0] = domain->mesh->edge_start;
	850	startEdgeFaces[1]= 0;
	851	countEdgeFaces[0] = domain->mesh->edge_count;
	852	countEdgeFaces[1]= 2;
[1553]	853	startFaceConctv[0] = domain->ibegin;
[1494]	854	startFaceConctv[1] = 0;
[1553]	855	countFaceConctv[0] = domain->ni;
[1494]	856	countFaceConctv[1] = domain->nvertex;
	857	}
	858	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes);
	859	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes);
	860	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
	861	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
	862	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
	863	SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0, &startFaces, &countFaces);
	864	SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0, &startFaces, &countFaces);
	865	SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes, isCollective, 0, &startFaceConctv, &countFaceConctv);
	866	SuperClassWriter::writeData(domain->mesh->face_edges, face_edges, isCollective, 0, &startFaceConctv, &countFaceConctv);
	867	SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces, isCollective, 0, &startEdgeFaces, &countEdgeFaces);
	868	SuperClassWriter::writeData(domain->mesh->face_faces, face_faces, isCollective, 0, &startFaceConctv, &countFaceConctv);
	869	}
[879]	870	SuperClassWriter::definition_start();
[878]	871
[879]	872	break;
	873	} // ONE_FILE
[878]	874
[879]	875	case (MULTI_FILE) :
	876	{
[1571]	877	ERROR("CNc4DataOutput::writeDomain(domain)",
	878	<< "[ type = multiple_file ]"
	879	<< " is not yet implemented for UGRID files !");
[879]	880	break;
	881	}
[878]	882
[879]	883	default :
	884	ERROR("CNc4DataOutput::writeDomain(domain)",
	885	<< "[ type = " << SuperClass::type << "]"
	886	<< " not implemented yet !");
	887	} // switch
	888	} // try
[878]	889
[879]	890	catch (CNetCdfException& e)
	891	{
	892	StdString msg("On writing the domain : ");
	893	msg.append(domid); msg.append("\n");
	894	msg.append("In the context : ");
	895	msg.append(context->getId()); msg.append("\n");
	896	msg.append(e.what());
[924]	897	ERROR("CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain)", << msg);
[879]	898	}
[878]	899
[879]	900	domain->addRelFile(this->filename);
	901	}
[878]	902
[879]	903	//--------------------------------------------------------------
[878]	904
[879]	905	void CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)
[449]	906	{
	907	CContext* context = CContext::getCurrent() ;
	908	CContextServer* server=context->server ;
[488]	909
[449]	910	if (domain->IsWritten(this->filename)) return;
	911	domain->checkAttributes();
[488]	912
	913	if (domain->isEmpty())
[449]	914	if (SuperClass::type==MULTI_FILE) return ;
	915
	916	std::vector<StdString> dim0, dim1;
[772]	917	StdString domid = domain->getDomainOutputName();
[705]	918	if (isWrittenDomain(domid)) return ;
[774]	919	else setWrittenDomain(domid);
[705]	920
[449]	921	StdString appendDomid = (singleDomain) ? "" : "_"+domid ;
	922
[1430]	923	StdString lonName,latName, cellName ;
[1391]	924	if (domain->lon_name.isEmpty()) lonName = "lon";
	925	else lonName = domain->lon_name;
	926
	927	if (domain->lat_name.isEmpty()) latName = "lat";
	928	else latName = domain->lat_name;
	929
[1430]	930	if (!domain->dim_i_name.isEmpty()) cellName=domain->dim_i_name;
	931	else cellName="cell";
	932	StdString dimXid = cellName+appendDomid;
[449]	933	StdString dimVertId = StdString("nvertex").append(appendDomid);
[488]	934
[449]	935	string lonid,latid,bounds_lonid,bounds_latid ;
[611]	936	string areaId = "area" + appendDomid;
[449]	937
[1158]	938	nc_type typePrec ;
	939	if (domain->prec.isEmpty()) typePrec = NC_FLOAT ;
	940	else if (domain->prec==4) typePrec = NC_FLOAT ;
	941	else if (domain->prec==8) typePrec = NC_DOUBLE ;
	942
[1132]	943	int nvertex = (domain->nvertex.isEmpty()) ? 0 : domain->nvertex;
[1025]	944
[1571]	945	CArray<int, 1>& indexToWrite = domain->localIndexToWriteOnServer;
[1132]	946	int nbWritten = indexToWrite.numElements();
	947	CArray<double,1> writtenLat, writtenLon;
	948	CArray<double,2> writtenBndsLat, writtenBndsLon;
	949	CArray<double,1> writtenArea;
	950
	951	if (domain->hasLonLat)
	952	{
	953	writtenLat.resize(nbWritten);
	954	writtenLon.resize(nbWritten);
	955	for (int idx = 0; idx < nbWritten; ++idx)
	956	{
[1571]	957	if (indexToWrite(idx) < 0)
	958	{
	959	writtenLat(idx) = -1.;
	960	writtenLon(idx) = -1.;
	961	}
	962	else
	963	{
	964	writtenLat(idx) = domain->latvalue(indexToWrite(idx));
	965	writtenLon(idx) = domain->lonvalue(indexToWrite(idx));
	966	}
[1132]	967	}
[1390]	968	}
[1132]	969
[1390]	970	if (domain->hasBounds)
	971	{
	972	int nvertex = domain->nvertex, idx;
	973	writtenBndsLat.resize(nvertex, nbWritten);
	974	writtenBndsLon.resize(nvertex, nbWritten);
	975	CArray<double,2>& boundslat = domain->bounds_latvalue;
	976	CArray<double,2>& boundslon = domain->bounds_lonvalue;
	977	for (idx = 0; idx < nbWritten; ++idx)
	978	{
	979	for (int nv = 0; nv < nvertex; ++nv)
	980	{
[1571]	981	if (indexToWrite(idx) < 0)
[1132]	982	{
[1571]	983	writtenBndsLat(nv, idx) = -1.;
	984	writtenBndsLon(nv, idx) = -1.;
[1132]	985	}
[1390]	986	else
	987	{
[1571]	988	writtenBndsLat(nv, idx) = boundslat(nv, int(indexToWrite(idx)));
	989	writtenBndsLon(nv, idx) = boundslon(nv, int(indexToWrite(idx)));
[1390]	990	}
	991	}
[1132]	992	}
	993	}
	994
	995	if (domain->hasArea)
	996	{
	997	writtenArea.resize(nbWritten);
	998	for (int idx = 0; idx < nbWritten; ++idx)
	999	{
[1589]	1000	if (indexToWrite(idx) < 0)
	1001	writtenArea(idx) = -1.;
	1002	else
	1003	writtenArea(idx) = domain->areavalue(indexToWrite(idx));
[1132]	1004	}
	1005	}
	1006
[498]	1007	try
[449]	1008	{
[498]	1009	switch (SuperClass::type)
	1010	{
	1011	case (MULTI_FILE) :
	1012	{
	1013	dim0.push_back(dimXid);
[1553]	1014	SuperClassWriter::addDimension(dimXid, domain->ni);
[488]	1015
[1415]	1016	lonid = lonName+appendDomid;
	1017	latid = latName+appendDomid;
[1430]	1018	if (!domain->bounds_lon_name.isEmpty()) bounds_lonid = domain->bounds_lon_name;
	1019	else bounds_lonid = "bounds_"+lonName+appendDomid;
	1020	if (!domain->bounds_lat_name.isEmpty()) bounds_latid = domain->bounds_lat_name;
	1021	else bounds_latid = "bounds_"+latName+appendDomid;
	1022
[665]	1023	if (domain->hasLonLat)
	1024	{
[1456]	1025	SuperClassWriter::addVariable(latid, typePrec, dim0, compressionLevel);
	1026	SuperClassWriter::addVariable(lonid, typePrec, dim0, compressionLevel);
[665]	1027	this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid);
	1028	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid);
	1029	this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid);
	1030	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid);
	1031	if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex);
	1032	}
[498]	1033	dim0.clear();
	1034	if (domain->hasBounds)
	1035	{
	1036	dim0.push_back(dimXid);
	1037	dim0.push_back(dimVertId);
[1456]	1038	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0, compressionLevel);
	1039	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0, compressionLevel);
[498]	1040	}
	1041
	1042	dim0.clear();
[449]	1043	dim0.push_back(dimXid);
[611]	1044	if (domain->hasArea)
	1045	{
[1456]	1046	SuperClassWriter::addVariable(areaId, typePrec, dim0, compressionLevel);
[614]	1047	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
[611]	1048	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
	1049	}
	1050
[498]	1051	SuperClassWriter::definition_end();
[449]	1052
[665]	1053	if (domain->hasLonLat)
[498]	1054	{
[1132]	1055	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0);
	1056	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0);
[665]	1057	if (domain->hasBounds)
	1058	{
[1132]	1059	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0);
	1060	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0);
[665]	1061	}
[498]	1062	}
[611]	1063
	1064	if (domain->hasArea)
[1132]	1065	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0);
[611]	1066
[498]	1067	SuperClassWriter::definition_start();
	1068	break ;
	1069	}
[488]	1070
[498]	1071	case (ONE_FILE) :
	1072	{
[1415]	1073	lonid = lonName+appendDomid;
	1074	latid = latName+appendDomid;
[1430]	1075	if (!domain->bounds_lon_name.isEmpty()) bounds_lonid = domain->bounds_lon_name;
	1076	else bounds_lonid = "bounds_"+lonName+appendDomid;
	1077	if (!domain->bounds_lat_name.isEmpty()) bounds_latid = domain->bounds_lat_name;
	1078	else bounds_latid = "bounds_"+latName+appendDomid;
[1391]	1079
[498]	1080	dim0.push_back(dimXid);
[1132]	1081	SuperClassWriter::addDimension(dimXid, domain->ni_glo);
[665]	1082	if (domain->hasLonLat)
	1083	{
[1456]	1084	SuperClassWriter::addVariable(latid, typePrec, dim0, compressionLevel);
	1085	SuperClassWriter::addVariable(lonid, typePrec, dim0, compressionLevel);
[665]	1086
	1087	this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid);
	1088	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid);
	1089	this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid);
	1090	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid);
[1025]	1091	if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, nvertex);
[665]	1092	}
[498]	1093	dim0.clear();
[449]	1094
[498]	1095	if (domain->hasBounds)
	1096	{
	1097	dim0.push_back(dimXid);
	1098	dim0.push_back(dimVertId);
[1456]	1099	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0, compressionLevel);
	1100	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0, compressionLevel);
[498]	1101	}
[488]	1102
[611]	1103	if (domain->hasArea)
	1104	{
	1105	dim0.clear();
	1106	dim0.push_back(dimXid);
[1456]	1107	SuperClassWriter::addVariable(areaId, typePrec, dim0, compressionLevel);
[614]	1108	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
[611]	1109	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
	1110	}
	1111
[498]	1112	SuperClassWriter::definition_end();
[488]	1113
[498]	1114	std::vector<StdSize> start(1), startBounds(2) ;
	1115	std::vector<StdSize> count(1), countBounds(2) ;
	1116	if (domain->isEmpty())
	1117	{
	1118	start[0]=0 ;
	1119	count[0]=0 ;
	1120	startBounds[1]=0 ;
[1025]	1121	countBounds[1]=nvertex ;
[498]	1122	startBounds[0]=0 ;
	1123	countBounds[0]=0 ;
	1124	}
	1125	else
	1126	{
[1553]	1127	start[0]=domain->ibegin;
	1128	count[0]=domain->ni;
	1129	startBounds[0]=domain->ibegin;
[498]	1130	startBounds[1]=0 ;
[1553]	1131	countBounds[0]=domain->ni;
[1025]	1132	countBounds[1]=nvertex ;
[498]	1133	}
[665]	1134
	1135	if (domain->hasLonLat)
[498]	1136	{
[1132]	1137	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count);
	1138	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count);
[665]	1139	if (domain->hasBounds)
	1140	{
[1132]	1141	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0,&startBounds,&countBounds);
	1142	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0,&startBounds,&countBounds);
[665]	1143	}
[498]	1144	}
[488]	1145
[611]	1146	if (domain->hasArea)
[1132]	1147	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0, &start, &count);
[488]	1148
[498]	1149	SuperClassWriter::definition_start();
[488]	1150
[498]	1151	break;
	1152	}
	1153	default :
	1154	ERROR("CNc4DataOutput::writeDomain(domain)",
	1155	<< "[ type = " << SuperClass::type << "]"
	1156	<< " not implemented yet !");
	1157	}
[219]	1158	}
[498]	1159	catch (CNetCdfException& e)
	1160	{
	1161	StdString msg("On writing the domain : ");
	1162	msg.append(domid); msg.append("\n");
	1163	msg.append("In the context : ");
	1164	msg.append(context->getId()); msg.append("\n");
	1165	msg.append(e.what());
	1166	ERROR("CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)", << msg);
	1167	}
[219]	1168	domain->addRelFile(this->filename);
	1169	}
	1170	//--------------------------------------------------------------
	1171
[347]	1172	void CNc4DataOutput::writeAxis_(CAxis* axis)
[219]	1173	{
[1030]	1174	if (axis->IsWritten(this->filename)) return;
	1175	axis->checkAttributes();
[488]	1176
[1129]	1177	axis->computeWrittenIndex();
[1249]	1178	axis->computeWrittenCompressedIndex(comm_file);
[1129]	1179
[1559]	1180	int size = (MULTI_FILE == SuperClass::type) ? axis->n.getValue()
	1181	: axis->n_glo.getValue();
[1099]	1182
[1559]	1183	if ((0 == axis->n) && (MULTI_FILE == SuperClass::type)) return;
[1235]	1184
[1030]	1185	std::vector<StdString> dims;
	1186	StdString axisid = axis->getAxisOutputName();
[1435]	1187	StdString axisDim, axisBoundsId;
[1030]	1188	if (isWrittenAxis(axisid)) return ;
	1189	else setWrittenAxis(axisid);
[705]	1190
[1158]	1191	nc_type typePrec ;
	1192	if (axis->prec.isEmpty()) typePrec = NC_FLOAT ;
[1235]	1193	else if (axis->prec==4) typePrec = NC_FLOAT ;
[1158]	1194	else if (axis->prec==8) typePrec = NC_DOUBLE ;
	1195
	1196	if (!axis->label.isEmpty()) typePrec = NC_CHAR ;
	1197	string strId="str_len" ;
[1030]	1198	try
	1199	{
[1433]	1200	if (axis->dim_name.isEmpty()) axisDim = axisid;
	1201	else axisDim=axis->dim_name.getValue();
[1559]	1202	SuperClassWriter::addDimension(axisDim, size);
[1433]	1203	dims.push_back(axisDim);
	1204
[1439]	1205	if (!axis->label.isEmpty() && !SuperClassWriter::dimExist(strId)) SuperClassWriter::addDimension(strId, stringArrayLen);
[1433]	1206
[1435]	1207	if (axis->hasValue \|\| !axis->label.isEmpty())
[816]	1208	{
[1158]	1209	if (!axis->label.isEmpty()) dims.push_back(strId);
[1430]	1210
[1456]	1211	SuperClassWriter::addVariable(axisid, typePrec, dims, compressionLevel);
[219]	1212
[1030]	1213	if (!axis->name.isEmpty())
	1214	SuperClassWriter::addAttribute("name", axis->name.getValue(), &axisid);
[219]	1215
[1030]	1216	if (!axis->standard_name.isEmpty())
	1217	SuperClassWriter::addAttribute("standard_name", axis->standard_name.getValue(), &axisid);
[540]	1218
[1030]	1219	if (!axis->long_name.isEmpty())
	1220	SuperClassWriter::addAttribute("long_name", axis->long_name.getValue(), &axisid);
[219]	1221
[1030]	1222	if (!axis->unit.isEmpty())
	1223	SuperClassWriter::addAttribute("units", axis->unit.getValue(), &axisid);
[219]	1224
[1430]	1225	if (!axis->axis_type.isEmpty())
	1226	{
	1227	switch(axis->axis_type)
	1228	{
	1229	case CAxis::axis_type_attr::X :
	1230	SuperClassWriter::addAttribute("axis", string("X"), &axisid);
	1231	break;
	1232	case CAxis::axis_type_attr::Y :
	1233	SuperClassWriter::addAttribute("axis", string("Y"), &axisid);
	1234	break;
	1235	case CAxis::axis_type_attr::Z :
	1236	SuperClassWriter::addAttribute("axis", string("Z"), &axisid);
	1237	break;
	1238	case CAxis::axis_type_attr::T :
	1239	SuperClassWriter::addAttribute("axis", string("T"), &axisid);
	1240	break;
	1241	}
	1242	}
	1243
[1030]	1244	if (!axis->positive.isEmpty())
	1245	{
	1246	SuperClassWriter::addAttribute("positive",
	1247	(axis->positive == CAxis::positive_attr::up) ? string("up") : string("down"),
	1248	&axisid);
	1249	}
[399]	1250
[1266]	1251	if (!axis->formula.isEmpty())
	1252	SuperClassWriter::addAttribute("formula", axis->formula.getValue(), &axisid);
	1253
	1254	if (!axis->formula_term.isEmpty())
	1255	SuperClassWriter::addAttribute("formula_term", axis->formula_term.getValue(), &axisid);
	1256
[1435]	1257	axisBoundsId = (axis->bounds_name.isEmpty()) ? axisid + "_bounds" : axis->bounds_name;
[1249]	1258	if (!axis->bounds.isEmpty() && axis->label.isEmpty())
[1030]	1259	{
	1260	dims.push_back("axis_nbounds");
[1456]	1261	SuperClassWriter::addVariable(axisBoundsId, typePrec, dims, compressionLevel);
[1030]	1262	SuperClassWriter::addAttribute("bounds", axisBoundsId, &axisid);
[1288]	1263
	1264	if (!axis->standard_name.isEmpty())
	1265	SuperClassWriter::addAttribute("standard_name", axis->standard_name.getValue(), &axisBoundsId);
	1266
	1267	if (!axis->unit.isEmpty())
	1268	SuperClassWriter::addAttribute("units", axis->unit.getValue(), &axisBoundsId);
	1269
[1266]	1270	if (!axis->formula_bounds.isEmpty())
[1288]	1271	SuperClassWriter::addAttribute("formula", axis->formula_bounds.getValue(), &axisBoundsId);
[1266]	1272
	1273	if (!axis->formula_term_bounds.isEmpty())
[1288]	1274	SuperClassWriter::addAttribute("formula_term", axis->formula_term_bounds.getValue(), &axisBoundsId);
[1030]	1275	}
[1435]	1276	}
[816]	1277
[1435]	1278	SuperClassWriter::definition_end();
	1279
[1571]	1280	CArray<int, 1>& indexToWrite = axis->localIndexToWriteOnServer;
[1435]	1281	int nbWritten = indexToWrite.numElements();
	1282	CArray<double,1> axis_value(indexToWrite.numElements());
	1283	if (!axis->value.isEmpty())
	1284	{
[1421]	1285	for (int i = 0; i < nbWritten; i++)
	1286	{
[1571]	1287	if (indexToWrite(i) < 0)
	1288	axis_value(i) = -1; // Some value in case of a hole
	1289	else
[1421]	1290	axis_value(i) = axis->value(indexToWrite(i));
	1291	}
[1435]	1292	}
	1293	CArray<double,2> axis_bounds;
	1294	CArray<string,1> axis_label;
	1295	if (!axis->label.isEmpty())
	1296	{
	1297	axis_label.resize(indexToWrite.numElements());
	1298	for (int i = 0; i < nbWritten; i++)
[1235]	1299	{
[1571]	1300	if (indexToWrite(i) < 0)
	1301	axis_label(i) = boost::lexical_cast<string>(-1); // Some value in case of a hole
	1302	else
[1435]	1303	axis_label(i) = axis->label(indexToWrite(i));
[1235]	1304	}
[1435]	1305	}
[1129]	1306
[1435]	1307	switch (SuperClass::type)
	1308	{
	1309	case MULTI_FILE:
[1030]	1310	{
[1435]	1311	if (axis->label.isEmpty())
[1437]	1312	{
	1313	if (!axis->value.isEmpty())
	1314	SuperClassWriter::writeData(axis_value, axisid, isCollective, 0);
[633]	1315
[1437]	1316	if (!axis->bounds.isEmpty())
	1317	{
[1129]	1318	axis_bounds.resize(2, indexToWrite.numElements());
	1319	for (int i = 0; i < nbWritten; ++i)
	1320	{
[1571]	1321	if (indexToWrite(i) < 0)
[1421]	1322	{
[1571]	1323	axis_bounds(0, i) = -1.; // Some value in case of a hole
	1324	axis_bounds(1, i) = -1.;
[1421]	1325	}
	1326	else
	1327	{
[1571]	1328	axis_bounds(0, i) = axis->bounds(0, int(indexToWrite(i)));
	1329	axis_bounds(1, i) = axis->bounds(1, int(indexToWrite(i)));
[1421]	1330	}
[1129]	1331	}
[1437]	1332	SuperClassWriter::writeData(axis_bounds, axisBoundsId, isCollective, 0);
	1333	}
[1435]	1334	}
[1437]	1335	else
[1435]	1336	SuperClassWriter::writeData(axis_label, axisid, isCollective, 0);
	1337
	1338	SuperClassWriter::definition_start();
	1339	break;
	1340	}
	1341	case ONE_FILE:
	1342	{
	1343	std::vector<StdSize> start(1), startBounds(2) ;
	1344	std::vector<StdSize> count(1), countBounds(2) ;
[1559]	1345	start[0] = startBounds[0] = axis->begin;
	1346	count[0] = countBounds[0] = axis->n;
[1435]	1347	startBounds[1] = 0;
	1348	countBounds[1] = 2;
	1349
	1350	if (axis->label.isEmpty())
[1437]	1351	{
	1352	if (!axis->value.isEmpty())
	1353	SuperClassWriter::writeData(axis_value, axisid, isCollective, 0, &start, &count);
[1435]	1354
[1437]	1355	if (!axis->bounds.isEmpty())
[1235]	1356	{
[1437]	1357	axis_bounds.resize(2, indexToWrite.numElements());
	1358	for (int i = 0; i < nbWritten; ++i)
[1435]	1359	{
[1571]	1360	if (indexToWrite(i) < 0)
[1437]	1361	{
[1571]	1362	axis_bounds(0, i) = -1.;
	1363	axis_bounds(1, i) = -1.;
[1437]	1364	}
	1365	else
	1366	{
[1571]	1367	axis_bounds(0, i) = axis->bounds(0, int(indexToWrite(i)));
	1368	axis_bounds(1, i) = axis->bounds(1, int(indexToWrite(i)));
[1437]	1369	}
[1435]	1370	}
[1437]	1371	SuperClassWriter::writeData(axis_bounds, axisBoundsId, isCollective, 0, &startBounds, &countBounds);
[1235]	1372	}
[1435]	1373	}
[1437]	1374	else
[1435]	1375	{
	1376	std::vector<StdSize> startLabel(2), countLabel(2);
	1377	startLabel[0] = start[0]; startLabel[1] = 0;
	1378	countLabel[0] = count[0]; countLabel[1] = stringArrayLen;
	1379	SuperClassWriter::writeData(axis_label, axisid, isCollective, 0, &startLabel, &countLabel);
	1380	}
[609]	1381
[1435]	1382	SuperClassWriter::definition_start();
	1383
	1384	break;
[609]	1385	}
[1435]	1386	default :
	1387	ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)",
	1388	<< "[ type = " << SuperClass::type << "]"
	1389	<< " not implemented yet !");
[609]	1390	}
[1030]	1391	}
	1392	catch (CNetCdfException& e)
	1393	{
	1394	StdString msg("On writing the axis : ");
	1395	msg.append(axisid); msg.append("\n");
	1396	msg.append("In the context : ");
	1397	CContext* context = CContext::getCurrent() ;
	1398	msg.append(context->getId()); msg.append("\n");
	1399	msg.append(e.what());
	1400	ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)", << msg);
	1401	}
[1158]	1402	axis->addRelFile(this->filename);
[391]	1403	}
[488]	1404
[887]	1405	void CNc4DataOutput::writeScalar_(CScalar* scalar)
	1406	{
	1407	if (scalar->IsWritten(this->filename)) return;
	1408	scalar->checkAttributes();
	1409	int scalarSize = 1;
	1410
	1411	StdString scalaId = scalar->getScalarOutputName();
[1430]	1412	StdString boundsId;
[887]	1413	if (isWrittenAxis(scalaId)) return ;
	1414	else setWrittenAxis(scalaId);
	1415
[1158]	1416	nc_type typePrec ;
	1417	if (scalar->prec.isEmpty()) typePrec = NC_FLOAT ;
	1418	else if (scalar->prec==4) typePrec = NC_FLOAT ;
	1419	else if (scalar->prec==8) typePrec = NC_DOUBLE ;
	1420
[1435]	1421	if (!scalar->label.isEmpty()) typePrec = NC_CHAR ;
	1422	string strId="str_len" ;
	1423
[887]	1424	try
	1425	{
[1439]	1426	if (!scalar->label.isEmpty() && !SuperClassWriter::dimExist(strId)) SuperClassWriter::addDimension(strId, stringArrayLen);
[1435]	1427
	1428	if (!scalar->value.isEmpty() \|\| !scalar->label.isEmpty())
[887]	1429	{
[1430]	1430	std::vector<StdString> dims;
	1431	StdString scalarDim = scalaId;
	1432
[1435]	1433	if (!scalar->label.isEmpty()) dims.push_back(strId);
	1434
[1158]	1435	SuperClassWriter::addVariable(scalaId, typePrec, dims);
[887]	1436
	1437	if (!scalar->name.isEmpty())
	1438	SuperClassWriter::addAttribute("name", scalar->name.getValue(), &scalaId);
	1439
	1440	if (!scalar->standard_name.isEmpty())
	1441	SuperClassWriter::addAttribute("standard_name", scalar->standard_name.getValue(), &scalaId);
	1442
	1443	if (!scalar->long_name.isEmpty())
	1444	SuperClassWriter::addAttribute("long_name", scalar->long_name.getValue(), &scalaId);
	1445
	1446	if (!scalar->unit.isEmpty())
	1447	SuperClassWriter::addAttribute("units", scalar->unit.getValue(), &scalaId);
	1448
[1430]	1449	if (!scalar->axis_type.isEmpty())
	1450	{
	1451	switch(scalar->axis_type)
	1452	{
	1453	case CScalar::axis_type_attr::X :
	1454	SuperClassWriter::addAttribute("axis", string("X"), &scalaId);
	1455	break;
	1456	case CScalar::axis_type_attr::Y :
	1457	SuperClassWriter::addAttribute("axis", string("Y"), &scalaId);
	1458	break;
	1459	case CScalar::axis_type_attr::Z :
	1460	SuperClassWriter::addAttribute("axis", string("Z"), &scalaId);
	1461	break;
	1462	case CScalar::axis_type_attr::T :
	1463	SuperClassWriter::addAttribute("axis", string("T"), &scalaId);
	1464	break;
	1465	}
	1466	}
	1467
[1435]	1468	if (!scalar->positive.isEmpty())
[1430]	1469	{
[1435]	1470	SuperClassWriter::addAttribute("positive",
	1471	(scalar->positive == CScalar::positive_attr::up) ? string("up") : string("down"),
	1472	&scalaId);
	1473	}
	1474
	1475	if (!scalar->bounds.isEmpty() && scalar->label.isEmpty())
	1476	{
[1436]	1477	dims.clear();
	1478	dims.push_back("axis_nbounds");
[1435]	1479	boundsId = (scalar->bounds_name.isEmpty()) ? (scalaId + "_bounds") : scalar->bounds_name.getValue();
[1430]	1480	SuperClassWriter::addVariable(boundsId, typePrec, dims);
[1436]	1481	SuperClassWriter::addAttribute("bounds", boundsId, &scalaId);
[1430]	1482	}
	1483
[887]	1484	SuperClassWriter::definition_end();
	1485
	1486	switch (SuperClass::type)
	1487	{
	1488	case MULTI_FILE:
	1489	{
	1490	CArray<double,1> scalarValue(scalarSize);
[1435]	1491	CArray<string,1> scalarLabel(scalarSize);
[1436]	1492	CArray<double,1> scalarBounds(scalarSize*2);
[1435]	1493
	1494	if (!scalar->value.isEmpty() && scalar->label.isEmpty())
[1430]	1495	{
[1435]	1496	scalarValue(0) = scalar->value;
	1497	SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0);
	1498	}
	1499
	1500	if (!scalar->bounds.isEmpty() && scalar->label.isEmpty())
	1501	{
[1436]	1502	scalarBounds(0) = scalar->bounds(0);
	1503	scalarBounds(1) = scalar->bounds(1);
	1504	SuperClassWriter::writeData(scalarBounds, boundsId, isCollective, 0);
[1430]	1505	}
[1435]	1506
	1507	if (!scalar->label.isEmpty())
	1508	{
	1509	scalarLabel(0) = scalar->label;
	1510	SuperClassWriter::writeData(scalarLabel, scalaId, isCollective, 0);
	1511	}
	1512
[887]	1513	SuperClassWriter::definition_start();
	1514
	1515	break;
	1516	}
	1517	case ONE_FILE:
	1518	{
	1519	CArray<double,1> scalarValue(scalarSize);
[1435]	1520	CArray<string,1> scalarLabel(scalarSize);
[1436]	1521	CArray<double,1> scalarBounds(scalarSize*2);
[887]	1522
	1523	std::vector<StdSize> start(1);
	1524	std::vector<StdSize> count(1);
	1525	start[0] = 0;
	1526	count[0] = 1;
[1435]	1527	if (!scalar->value.isEmpty() && scalar->label.isEmpty())
[1430]	1528	{
[1435]	1529	scalarValue(0) = scalar->value;
	1530	SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0, &start, &count);
	1531	}
	1532	if (!scalar->bounds.isEmpty() && scalar->label.isEmpty())
	1533	{
[1436]	1534	scalarBounds(0) = scalar->bounds(0);
	1535	scalarBounds(1) = scalar->bounds(1);
	1536	count[0] = 2;
	1537	SuperClassWriter::writeData(scalarBounds, boundsId, isCollective, 0, &start, &count);
[1430]	1538	}
[1435]	1539	if (!scalar->label.isEmpty())
	1540	{
	1541	scalarLabel(0) = scalar->label;
	1542	count[0] = stringArrayLen;
	1543	SuperClassWriter::writeData(scalarLabel, scalaId, isCollective, 0, &start, &count);
	1544	}
	1545
[887]	1546	SuperClassWriter::definition_start();
	1547
	1548	break;
	1549	}
	1550	default :
	1551	ERROR("CNc4DataOutput::writeAxis_(CAxis* scalar)",
	1552	<< "[ type = " << SuperClass::type << "]"
	1553	<< " not implemented yet !");
	1554	}
	1555	}
	1556	}
	1557	catch (CNetCdfException& e)
	1558	{
	1559	StdString msg("On writing the scalar : ");
	1560	msg.append(scalaId); msg.append("\n");
	1561	msg.append("In the context : ");
	1562	CContext* context = CContext::getCurrent() ;
	1563	msg.append(context->getId()); msg.append("\n");
	1564	msg.append(e.what());
	1565	ERROR("CNc4DataOutput::writeScalar_(CScalar* scalar)", << msg);
	1566	}
	1567	scalar->addRelFile(this->filename);
	1568	}
	1569
[676]	1570	//--------------------------------------------------------------
	1571
	1572	void CNc4DataOutput::writeGridCompressed_(CGrid* grid)
	1573	{
	1574	if (grid->isScalarGrid() \|\| grid->isWrittenCompressed(this->filename)) return;
	1575
	1576	try
	1577	{
[887]	1578	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
[676]	1579	std::vector<StdString> domainList = grid->getDomainList();
	1580	std::vector<StdString> axisList = grid->getAxisList();
[887]	1581	std::vector<StdString> scalarList = grid->getScalarList();
	1582	int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0;
[676]	1583
	1584	std::vector<StdString> dims;
	1585
	1586	if (grid->isCompressible())
	1587	{
	1588	StdString varId = grid->getId() + "_points";
	1589
	1590	int nbIndexes = (SuperClass::type == MULTI_FILE) ? grid->getNumberWrittenIndexes() : grid->getTotalNumberWrittenIndexes();
	1591	SuperClassWriter::addDimension(varId, nbIndexes);
	1592
	1593	dims.push_back(varId);
	1594	SuperClassWriter::addVariable(varId, NC_INT, dims);
	1595
	1596	StdOStringStream compress;
	1597	for (int i = numElement - 1; i >= 0; --i)
	1598	{
[887]	1599	if (2 == axisDomainOrder(i))
[676]	1600	{
	1601	CDomain* domain = CDomain::get(domainList[domainList.size() - idxDomain - 1]);
[772]	1602	StdString domId = domain->getDomainOutputName();
[676]	1603	StdString appendDomId = singleDomain ? "" : "_" + domId;
	1604
	1605	switch (domain->type)
	1606	{
	1607	case CDomain::type_attr::curvilinear:
	1608	compress << "y" << appendDomId << " x" << appendDomId;
	1609	break;
	1610	case CDomain::type_attr::rectilinear:
	1611	compress << "lat" << appendDomId << " lon" << appendDomId;
	1612	break;
	1613	case CDomain::type_attr::unstructured:
[1430]	1614	StdString cellName = (!domain->dim_i_name.isEmpty()) ? cellName=domain->dim_i_name : "cell";
	1615	compress << cellName << appendDomId;
	1616	// compress << "cell" << appendDomId;
[676]	1617	break;
	1618	}
	1619	++idxDomain;
	1620	}
[887]	1621	else if (1 == axisDomainOrder(i))
[676]	1622	{
	1623	CAxis* axis = CAxis::get(axisList[axisList.size() - idxAxis - 1]);
[772]	1624	compress << axis->getAxisOutputName();
[676]	1625	++idxAxis;
	1626	}
[887]	1627	else
	1628	{
	1629	CScalar* scalar = CScalar::get(scalarList[scalarList.size() - idxScalar - 1]);
	1630	compress << scalar->getScalarOutputName();
	1631	++idxScalar;
	1632	}
[676]	1633
	1634	if (i != 0) compress << ' ';
	1635	}
[1144]	1636	SuperClassWriter::addAttribute("compress", compress.str(), &varId);
[676]	1637
	1638	CArray<int, 1> indexes(grid->getNumberWrittenIndexes());
[1143]	1639	indexes = grid->localIndexToWriteOnServer;
[676]	1640
	1641	switch (SuperClass::type)
	1642	{
	1643	case (MULTI_FILE):
	1644	{
	1645	SuperClassWriter::writeData(indexes, varId, isCollective, 0);
	1646	break;
	1647	}
	1648	case (ONE_FILE):
	1649	{
	1650	if (grid->doGridHaveDataDistributed())
	1651	grid->getDistributionServer()->computeGlobalIndex(indexes);
	1652
	1653	std::vector<StdSize> start, count;
	1654	start.push_back(grid->getOffsetWrittenIndexes());
	1655	count.push_back(grid->getNumberWrittenIndexes());
	1656
	1657	SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count);
	1658	break;
	1659	}
	1660	}
	1661	}
	1662	else
	1663	{
	1664	for (int i = 0; i < numElement; ++i)
	1665	{
	1666	StdString varId, compress;
	1667	CArray<int, 1> indexes;
	1668	bool isDistributed;
	1669	StdSize nbIndexes, totalNbIndexes, offset;
	1670	int firstGlobalIndex;
	1671
[887]	1672	if (2 == axisDomainOrder(i))
[676]	1673	{
	1674	CDomain* domain = CDomain::get(domainList[idxDomain]);
[774]	1675	StdString domId = domain->getDomainOutputName();
	1676
[676]	1677	if (!domain->isCompressible()
	1678	\|\| domain->type == CDomain::type_attr::unstructured
[774]	1679	\|\| domain->isWrittenCompressed(this->filename)
	1680	\|\| isWrittenCompressedDomain(domId))
[676]	1681	continue;
	1682
	1683	StdString appendDomId = singleDomain ? "" : "_" + domId;
	1684
	1685	varId = domId + "_points";
	1686	switch (domain->type)
	1687	{
	1688	case CDomain::type_attr::curvilinear:
	1689	compress = "y" + appendDomId + " x" + appendDomId;
	1690	break;
	1691	case CDomain::type_attr::rectilinear:
	1692	compress = "lat" + appendDomId + " lon" + appendDomId;
	1693	break;
	1694	}
	1695
[1249]	1696	// indexes.resize(domain->compressedIndexToWriteOnServer[comm_file].numElements());
	1697	// indexes = domain->compressedIndexToWriteOnServer[com_file];
	1698	indexes.resize(domain->getCompressedIndexToWriteOnServer(comm_file).numElements());
	1699	indexes = domain->getCompressedIndexToWriteOnServer(comm_file);
[1143]	1700
[676]	1701	isDistributed = domain->isDistributed();
[1249]	1702	nbIndexes = domain->getNumberWrittenIndexes(comm_file);
	1703	totalNbIndexes = domain->getTotalNumberWrittenIndexes(comm_file);
	1704	offset = domain->getOffsetWrittenIndexes(comm_file);
[676]	1705	firstGlobalIndex = domain->ibegin + domain->jbegin * domain->ni_glo;
	1706
	1707	domain->addRelFileCompressed(this->filename);
[774]	1708	setWrittenCompressedDomain(domId);
[676]	1709	++idxDomain;
	1710	}
[887]	1711	else if (1 == axisDomainOrder(i))
[676]	1712	{
	1713	CAxis* axis = CAxis::get(axisList[idxAxis]);
[774]	1714	StdString axisId = axis->getAxisOutputName();
	1715
	1716	if (!axis->isCompressible()
	1717	\|\| axis->isWrittenCompressed(this->filename)
	1718	\|\| isWrittenCompressedAxis(axisId))
[676]	1719	continue;
	1720
	1721	varId = axisId + "_points";
	1722	compress = axisId;
	1723
[1249]	1724	// indexes.resize(axis->compressedIndexToWriteOnServer.numElements());
	1725	// indexes = axis->compressedIndexToWriteOnServer;
[1143]	1726
[1249]	1727	indexes.resize(axis->getCompressedIndexToWriteOnServer(comm_file).numElements());
	1728	indexes = axis->getCompressedIndexToWriteOnServer(comm_file);
	1729
[676]	1730	isDistributed = axis->isDistributed();
[1249]	1731	nbIndexes = axis->getNumberWrittenIndexes(comm_file);
	1732	totalNbIndexes = axis->getTotalNumberWrittenIndexes(comm_file);
	1733	offset = axis->getOffsetWrittenIndexes(comm_file);
[676]	1734	firstGlobalIndex = axis->begin;
	1735
	1736	axis->addRelFileCompressed(this->filename);
[774]	1737	setWrittenCompressedAxis(axisId);
[676]	1738	++idxAxis;
	1739	}
[887]	1740	else
	1741	{
	1742	}
[676]	1743
	1744	if (!varId.empty())
	1745	{
	1746	SuperClassWriter::addDimension(varId, (SuperClass::type == MULTI_FILE) ? nbIndexes : totalNbIndexes);
	1747
	1748	dims.clear();
	1749	dims.push_back(varId);
	1750	SuperClassWriter::addVariable(varId, NC_INT, dims);
	1751
	1752	SuperClassWriter::addAttribute("compress", compress, &varId);
	1753
	1754	switch (SuperClass::type)
	1755	{
	1756	case (MULTI_FILE):
	1757	{
	1758	indexes -= firstGlobalIndex;
	1759	SuperClassWriter::writeData(indexes, varId, isCollective, 0);
	1760	break;
	1761	}
	1762	case (ONE_FILE):
	1763	{
	1764	std::vector<StdSize> start, count;
	1765	start.push_back(offset);
	1766	count.push_back(nbIndexes);
	1767
	1768	SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count);
	1769	break;
	1770	}
	1771	}
	1772	}
[1144]	1773	}
[676]	1774	}
	1775
	1776	grid->addRelFileCompressed(this->filename);
	1777	}
	1778	catch (CNetCdfException& e)
	1779	{
	1780	StdString msg("On writing compressed grid : ");
	1781	msg.append(grid->getId()); msg.append("\n");
	1782	msg.append("In the context : ");
	1783	CContext* context = CContext::getCurrent();
	1784	msg.append(context->getId()); msg.append("\n");
	1785	msg.append(e.what());
	1786	ERROR("CNc4DataOutput::writeGridCompressed_(CGrid* grid)", << msg);
	1787	}
	1788	}
	1789
	1790	//--------------------------------------------------------------
	1791
[391]	1792	void CNc4DataOutput::writeTimeDimension_(void)
	1793	{
[498]	1794	try
	1795	{
[802]	1796	SuperClassWriter::addDimension(getTimeCounterName());
[498]	1797	}
	1798	catch (CNetCdfException& e)
	1799	{
[614]	1800	StdString msg("On writing time dimension : time_couter\n");
[498]	1801	msg.append("In the context : ");
	1802	CContext* context = CContext::getCurrent() ;
	1803	msg.append(context->getId()); msg.append("\n");
	1804	msg.append(e.what());
	1805	ERROR("CNc4DataOutput::writeTimeDimension_(void)", << msg);
	1806	}
[391]	1807	}
[676]	1808
[219]	1809	//--------------------------------------------------------------
	1810
[347]	1811	void CNc4DataOutput::writeField_(CField* field)
[219]	1812	{
[1158]	1813	CContext* context = CContext::getCurrent() ;
	1814	CContextServer* server=context->server ;
[300]	1815
[1158]	1816	std::vector<StdString> dims, coodinates;
	1817	CGrid* grid = field->grid;
	1818	if (!grid->doGridHaveDataToWrite())
[567]	1819	if (SuperClass::type==MULTI_FILE) return ;
[488]	1820
[1158]	1821	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
	1822	int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0;
	1823	std::vector<StdString> domainList = grid->getDomainList();
	1824	std::vector<StdString> axisList = grid->getAxisList();
	1825	std::vector<StdString> scalarList = grid->getScalarList();
[219]	1826
[1158]	1827	StdString timeid = getTimeCounterName();
	1828	StdString dimXid,dimYid;
	1829	std::deque<StdString> dimIdList, dimCoordList;
	1830	bool hasArea = false;
	1831	StdString cellMeasures = "area:";
	1832	bool compressedOutput = !field->indexed_output.isEmpty() && field->indexed_output;
[488]	1833
[1158]	1834	for (int i = 0; i < numElement; ++i)
	1835	{
	1836	if (2 == axisDomainOrder(i))
	1837	{
	1838	CDomain* domain = CDomain::get(domainList[idxDomain]);
	1839	StdString domId = domain->getDomainOutputName();
	1840	StdString appendDomId = singleDomain ? "" : "_" + domId ;
[1391]	1841	StdString lonName,latName ;
[1430]	1842	StdString dimIname,dimJname ;
[676]	1843
[1415]	1844	if (domain->lon_name.isEmpty())
	1845	{
	1846	if (domain->type==CDomain::type_attr::curvilinear) lonName = "nav_lon";
	1847	else lonName = "lon";
	1848	}
[1391]	1849	else lonName = domain->lon_name;
	1850
[1415]	1851	if (domain->lat_name.isEmpty())
	1852	{
	1853	if (domain->type==CDomain::type_attr::curvilinear) latName = "nav_lat";
	1854	else latName = "lat";
	1855	}
[1391]	1856	else latName = domain->lat_name;
[1430]	1857
	1858	if (domain->dim_i_name.isEmpty())
	1859	{
	1860	if (domain->type==CDomain::type_attr::curvilinear) dimIname = "x";
	1861	else if (domain->type==CDomain::type_attr::unstructured) dimIname = "cell";
	1862	else dimIname = lonName;
	1863	}
	1864	else dimIname = domain->dim_i_name;
	1865
	1866	if (domain->dim_j_name.isEmpty())
	1867	{
	1868	if (domain->type==CDomain::type_attr::curvilinear) dimJname = "y";
	1869	else dimJname = latName;
	1870	}
	1871	else dimJname = domain->dim_j_name;
[1391]	1872
[1158]	1873	if (compressedOutput && domain->isCompressible() && domain->type != CDomain::type_attr::unstructured)
	1874	{
	1875	dimIdList.push_back(domId + "_points");
	1876	field->setUseCompressedOutput();
	1877	}
[676]	1878
[1158]	1879	switch (domain->type)
[879]	1880	{
[1158]	1881	case CDomain::type_attr::curvilinear:
	1882	if (!compressedOutput \|\| !domain->isCompressible())
	1883	{
[1430]	1884	dimXid=dimIname+appendDomId;
	1885	dimYid=dimJname+appendDomId;
[1158]	1886	dimIdList.push_back(dimXid);
	1887	dimIdList.push_back(dimYid);
	1888	}
[1415]	1889	dimCoordList.push_back(lonName+appendDomId);
	1890	dimCoordList.push_back(latName+appendDomId);
[1158]	1891	break ;
	1892	case CDomain::type_attr::rectilinear:
	1893	if (!compressedOutput \|\| !domain->isCompressible())
	1894	{
[1430]	1895	dimXid = dimIname+appendDomId;
	1896	dimYid = dimJname+appendDomId;
[1158]	1897	dimIdList.push_back(dimXid);
	1898	dimIdList.push_back(dimYid);
	1899	}
[1430]	1900	if (lonName != dimIname) dimCoordList.push_back(lonName+appendDomId);
	1901	if (latName != dimJname) dimCoordList.push_back(latName+appendDomId);
	1902
[1158]	1903	break ;
	1904	case CDomain::type_attr::unstructured:
	1905	{
	1906	if (SuperClassWriter::useCFConvention)
	1907	{
[1430]	1908	dimXid = dimIname + appendDomId;
[1158]	1909	dimIdList.push_back(dimXid);
[1415]	1910	dimCoordList.push_back(lonName+appendDomId);
	1911	dimCoordList.push_back(latName+appendDomId);
[1158]	1912	}
	1913	else
	1914	{
	1915	StdString domainName = domain->name;
	1916	if (domain->nvertex == 1)
	1917	{
	1918	dimXid = "n" + domainName + "_node";
	1919	dimIdList.push_back(dimXid);
	1920	dimCoordList.push_back(StdString(domainName + "_node_x"));
	1921	dimCoordList.push_back(StdString(domainName + "_node_y"));
	1922	}
	1923	else if (domain->nvertex == 2)
	1924	{
	1925	dimXid = "n" + domainName + "_edge";
	1926	dimIdList.push_back(dimXid);
	1927	dimCoordList.push_back(StdString(domainName + "_edge_x"));
	1928	dimCoordList.push_back(StdString(domainName + "_edge_y"));
	1929	}
	1930	else
	1931	{
	1932	dimXid = "n" + domainName + "_face";
	1933	dimIdList.push_back(dimXid);
	1934	dimCoordList.push_back(StdString(domainName + "_face_x"));
	1935	dimCoordList.push_back(StdString(domainName + "_face_y"));
	1936	}
	1937	} // ugrid convention
	1938	} // case unstructured domain
[879]	1939	}
[1158]	1940
	1941	if (domain->hasArea)
[879]	1942	{
[1158]	1943	hasArea = true;
	1944	cellMeasures += " area" + appendDomId;
[879]	1945	}
[1158]	1946	++idxDomain;
	1947	}
	1948	else if (1 == axisDomainOrder(i))
	1949	{
	1950	CAxis* axis = CAxis::get(axisList[idxAxis]);
	1951	StdString axisId = axis->getAxisOutputName();
[1430]	1952	StdString axisDim;
[1158]	1953
[1430]	1954	if (axis->dim_name.isEmpty()) axisDim = axisId;
	1955	else axisDim=axis->dim_name.getValue();
	1956
[1158]	1957	if (compressedOutput && axis->isCompressible())
[879]	1958	{
[1430]	1959	dimIdList.push_back(axisDim + "_points");
[1158]	1960	field->setUseCompressedOutput();
[879]	1961	}
[1158]	1962	else
[1430]	1963	dimIdList.push_back(axisDim);
[878]	1964
[1430]	1965	if (axisDim != axisId) dimCoordList.push_back(axisId);
[1158]	1966	++idxAxis;
	1967	}
[1430]	1968	else
[1158]	1969	{
[1430]	1970	CScalar* scalar = CScalar::get(scalarList[idxScalar]);
	1971	StdString scalarId = scalar->getScalarOutputName();
[1446]	1972	if (!scalar->value.isEmpty() \|\| !scalar->label.isEmpty())
	1973	dimCoordList.push_back(scalarId);
[1430]	1974	++idxScalar;
[1158]	1975	}
	1976	}
[488]	1977
[1158]	1978	StdString fieldid = field->getFieldOutputName();
[219]	1979
[1158]	1980	nc_type type ;
	1981	if (field->prec.isEmpty()) type = NC_FLOAT ;
	1982	else
	1983	{
	1984	if (field->prec==2) type = NC_SHORT ;
	1985	else if (field->prec==4) type = NC_FLOAT ;
	1986	else if (field->prec==8) type = NC_DOUBLE ;
	1987	}
[488]	1988
[1158]	1989	bool wtime = !(!field->operation.isEmpty() && field->getOperationTimeType() == func::CFunctor::once);
[488]	1990
[1158]	1991	if (wtime)
	1992	{
	1993	if (field->hasTimeInstant && hasTimeInstant) coodinates.push_back(string("time_instant"));
	1994	else if (field->hasTimeCentered && hasTimeCentered) coodinates.push_back(string("time_centered"));
	1995	dims.push_back(timeid);
	1996	}
[488]	1997
[1158]	1998	if (compressedOutput && grid->isCompressible())
	1999	{
	2000	dims.push_back(grid->getId() + "_points");
	2001	field->setUseCompressedOutput();
	2002	}
	2003	else
	2004	{
	2005	while (!dimIdList.empty())
	2006	{
	2007	dims.push_back(dimIdList.back());
	2008	dimIdList.pop_back();
	2009	}
	2010	}
[219]	2011
[1158]	2012	while (!dimCoordList.empty())
	2013	{
	2014	coodinates.push_back(dimCoordList.back());
	2015	dimCoordList.pop_back();
	2016	}
[219]	2017
[1158]	2018	try
	2019	{
[498]	2020	SuperClassWriter::addVariable(fieldid, type, dims);
[488]	2021
[498]	2022	if (!field->standard_name.isEmpty())
	2023	SuperClassWriter::addAttribute
	2024	("standard_name", field->standard_name.getValue(), &fieldid);
[219]	2025
[498]	2026	if (!field->long_name.isEmpty())
	2027	SuperClassWriter::addAttribute
	2028	("long_name", field->long_name.getValue(), &fieldid);
[219]	2029
[498]	2030	if (!field->unit.isEmpty())
	2031	SuperClassWriter::addAttribute
	2032	("units", field->unit.getValue(), &fieldid);
[463]	2033
[1158]	2034	// Ugrid field attributes "mesh" and "location"
	2035	if (!SuperClassWriter::useCFConvention)
	2036	{
	2037	if (!domainList.empty())
	2038	{
	2039	CDomain* domain = CDomain::get(domainList[0]); // Suppose that we have only domain
	2040	StdString mesh = domain->name;
	2041	SuperClassWriter::addAttribute("mesh", mesh, &fieldid);
	2042	StdString location;
	2043	if (domain->nvertex == 1)
	2044	location = "node";
	2045	else if (domain->nvertex == 2)
	2046	location = "edge";
	2047	else if (domain->nvertex > 2)
	2048	location = "face";
	2049	SuperClassWriter::addAttribute("location", location, &fieldid);
	2050	}
	2051
	2052	}
	2053
	2054	if (!field->valid_min.isEmpty())
[498]	2055	SuperClassWriter::addAttribute
	2056	("valid_min", field->valid_min.getValue(), &fieldid);
[463]	2057
[498]	2058	if (!field->valid_max.isEmpty())
	2059	SuperClassWriter::addAttribute
	2060	("valid_max", field->valid_max.getValue(), &fieldid);
[464]	2061
[498]	2062	if (!field->scale_factor.isEmpty())
	2063	SuperClassWriter::addAttribute
	2064	("scale_factor", field->scale_factor.getValue(), &fieldid);
[464]	2065
[498]	2066	if (!field->add_offset.isEmpty())
	2067	SuperClassWriter::addAttribute
	2068	("add_offset", field->add_offset.getValue(), &fieldid);
[488]	2069
[498]	2070	SuperClassWriter::addAttribute
	2071	("online_operation", field->operation.getValue(), &fieldid);
[472]	2072
[498]	2073	// write child variables as attributes
[488]	2074
	2075
[1021]	2076	bool alreadyAddCellMethod = false;
	2077	StdString cellMethodsPrefix(""), cellMethodsSuffix("");
	2078	if (!field->cell_methods.isEmpty())
	2079	{
[1158]	2080	StdString cellMethodString = field->cell_methods;
	2081	if (field->cell_methods_mode.isEmpty() \|\|
[1021]	2082	(CField::cell_methods_mode_attr::overwrite == field->cell_methods_mode))
[1158]	2083	{
	2084	SuperClassWriter::addAttribute("cell_methods", cellMethodString, &fieldid);
	2085	alreadyAddCellMethod = true;
	2086	}
	2087	else
	2088	{
	2089	switch (field->cell_methods_mode)
	2090	{
	2091	case (CField::cell_methods_mode_attr::prefix):
	2092	cellMethodsPrefix = cellMethodString;
	2093	cellMethodsPrefix += " ";
	2094	break;
	2095	case (CField::cell_methods_mode_attr::suffix):
	2096	cellMethodsSuffix = " ";
	2097	cellMethodsSuffix += cellMethodString;
	2098	break;
	2099	case (CField::cell_methods_mode_attr::none):
	2100	break;
	2101	default:
	2102	break;
	2103	}
	2104	}
[1021]	2105	}
[488]	2106
[1021]	2107
[498]	2108	if (wtime)
	2109	{
[614]	2110	CDuration freqOp = field->freq_op.getValue();
	2111	freqOp.solveTimeStep(*context->calendar);
	2112	StdString freqOpStr = freqOp.toStringUDUnits();
[612]	2113	SuperClassWriter::addAttribute("interval_operation", freqOpStr, &fieldid);
[437]	2114
[614]	2115	CDuration freqOut = field->getRelFile()->output_freq.getValue();
	2116	freqOut.solveTimeStep(*context->calendar);
	2117	SuperClassWriter::addAttribute("interval_write", freqOut.toStringUDUnits(), &fieldid);
[612]	2118
[1021]	2119	StdString cellMethods(cellMethodsPrefix + "time: ");
[612]	2120	if (field->operation.getValue() == "instant") cellMethods += "point";
	2121	else if (field->operation.getValue() == "average") cellMethods += "mean";
	2122	else if (field->operation.getValue() == "accumulate") cellMethods += "sum";
	2123	else cellMethods += field->operation;
[614]	2124	if (freqOp.resolve(context->calendar) != freqOut.resolve(context->calendar))
	2125	cellMethods += " (interval: " + freqOpStr + ")";
[1021]	2126	cellMethods += cellMethodsSuffix;
	2127	if (!alreadyAddCellMethod)
	2128	SuperClassWriter::addAttribute("cell_methods", cellMethods, &fieldid);
[498]	2129	}
[488]	2130
[611]	2131	if (hasArea)
	2132	SuperClassWriter::addAttribute("cell_measures", cellMeasures, &fieldid);
	2133
[498]	2134	if (!field->default_value.isEmpty())
	2135	{
[1424]	2136	double default_value = field->default_value.getValue();
	2137	if (type == NC_DOUBLE)
	2138	{
	2139	SuperClassWriter::setDefaultValue(fieldid, &default_value);
	2140	}
	2141	else if (type == NC_SHORT)
	2142	{
	2143	short sdefault_value = (short)default_value;
	2144	SuperClassWriter::setDefaultValue(fieldid, &sdefault_value);
	2145	}
	2146	else
	2147	{
	2148	float fdefault_value = (float)default_value;
	2149	SuperClassWriter::setDefaultValue(fieldid, &fdefault_value);
	2150	}
[498]	2151	}
	2152	else
[517]	2153	SuperClassWriter::setDefaultValue(fieldid, (double*)NULL);
[219]	2154
[606]	2155	if (field->compression_level.isEmpty())
	2156	field->compression_level = field->file->compression_level.isEmpty() ? 0 : field->file->compression_level;
	2157	SuperClassWriter::setCompressionLevel(fieldid, field->compression_level);
	2158
[878]	2159	{ // Ecriture des coordonnes
[488]	2160
[498]	2161	StdString coordstr; //boost::algorithm::join(coodinates, " ")
	2162	std::vector<StdString>::iterator
	2163	itc = coodinates.begin(), endc = coodinates.end();
[488]	2164
[498]	2165	for (; itc!= endc; itc++)
	2166	{
	2167	StdString & coord = *itc;
	2168	if (itc+1 != endc)
	2169	coordstr.append(coord).append(" ");
	2170	else coordstr.append(coord);
	2171	}
[219]	2172
[498]	2173	SuperClassWriter::addAttribute("coordinates", coordstr, &fieldid);
[219]	2174
[498]	2175	}
[1222]	2176
	2177	vector<CVariable*> listVars = field->getAllVariables() ;
	2178	for (vector<CVariable>::iterator it = listVars.begin() ;it != listVars.end(); it++) writeAttribute_(it, fieldid) ;
	2179
[219]	2180	}
[498]	2181	catch (CNetCdfException& e)
	2182	{
	2183	StdString msg("On writing field : ");
	2184	msg.append(fieldid); msg.append("\n");
	2185	msg.append("In the context : ");
	2186	msg.append(context->getId()); msg.append("\n");
	2187	msg.append(e.what());
	2188	ERROR("CNc4DataOutput::writeField_(CField* field)", << msg);
	2189	}
[879]	2190	} // writeField_()
[219]	2191
	2192	//--------------------------------------------------------------
	2193
[347]	2194	void CNc4DataOutput::writeFile_ (CFile* file)
[219]	2195	{
[773]	2196	StdString filename = file->getFileOutputName();
[219]	2197	StdString description = (!file->description.isEmpty())
	2198	? file->description.getValue()
[335]	2199	: StdString("Created by xios");
[609]	2200
	2201	singleDomain = (file->nbDomains == 1);
	2202
[1158]	2203	StdString conv_str ;
	2204	if (file->convention_str.isEmpty())
	2205	{
	2206	if (SuperClassWriter::useCFConvention) conv_str="CF-1.6" ;
	2207	else conv_str="UGRID" ;
	2208	}
	2209	else conv_str=file->convention_str ;
	2210
[498]	2211	try
	2212	{
[1309]	2213	if (!appendMode) this->writeFileAttributes(filename, description,
	2214	conv_str,
	2215	StdString("An IPSL model"),
	2216	this->getTimeStamp());
[609]	2217
[701]	2218	if (!appendMode)
	2219	SuperClassWriter::addDimension("axis_nbounds", 2);
[498]	2220	}
	2221	catch (CNetCdfException& e)
	2222	{
	2223	StdString msg("On writing file : ");
	2224	msg.append(filename); msg.append("\n");
	2225	msg.append("In the context : ");
	2226	CContext* context = CContext::getCurrent() ;
	2227	msg.append(context->getId()); msg.append("\n");
	2228	msg.append(e.what());
	2229	ERROR("CNc4DataOutput::writeFile_ (CFile* file)", << msg);
	2230	}
[219]	2231	}
[488]	2232
[472]	2233	void CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)
	2234	{
[773]	2235	StdString name = var->getVariableOutputName();
[488]	2236
[498]	2237	try
	2238	{
[527]	2239	if (var->type.getValue() == CVariable::type_attr::t_int \|\| var->type.getValue() == CVariable::type_attr::t_int32)
	2240	addAttribute(name, var->getData<int>(), &fieldId);
	2241	else if (var->type.getValue() == CVariable::type_attr::t_int16)
	2242	addAttribute(name, var->getData<short int>(), &fieldId);
	2243	else if (var->type.getValue() == CVariable::type_attr::t_float)
	2244	addAttribute(name, var->getData<float>(), &fieldId);
	2245	else if (var->type.getValue() == CVariable::type_attr::t_double)
	2246	addAttribute(name, var->getData<double>(), &fieldId);
	2247	else if (var->type.getValue() == CVariable::type_attr::t_string)
	2248	addAttribute(name, var->getData<string>(), &fieldId);
	2249	else
	2250	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)",
	2251	<< "Unsupported variable of type " << var->type.getStringValue());
[498]	2252	}
	2253	catch (CNetCdfException& e)
	2254	{
	2255	StdString msg("On writing attributes of variable with name : ");
	2256	msg.append(name); msg.append("in the field "); msg.append(fieldId); msg.append("\n");
	2257	msg.append("In the context : ");
	2258	CContext* context = CContext::getCurrent() ;
	2259	msg.append(context->getId()); msg.append("\n");
	2260	msg.append(e.what());
	2261	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", << msg);
	2262	}
[472]	2263	}
[488]	2264
[472]	2265	void CNc4DataOutput::writeAttribute_ (CVariable* var)
	2266	{
[773]	2267	StdString name = var->getVariableOutputName();
	2268
[498]	2269	try
	2270	{
[527]	2271	if (var->type.getValue() == CVariable::type_attr::t_int \|\| var->type.getValue() == CVariable::type_attr::t_int32)
	2272	addAttribute(name, var->getData<int>());
	2273	else if (var->type.getValue() == CVariable::type_attr::t_int16)
	2274	addAttribute(name, var->getData<short int>());
	2275	else if (var->type.getValue() == CVariable::type_attr::t_float)
	2276	addAttribute(name, var->getData<float>());
	2277	else if (var->type.getValue() == CVariable::type_attr::t_double)
	2278	addAttribute(name, var->getData<double>());
	2279	else if (var->type.getValue() == CVariable::type_attr::t_string)
	2280	addAttribute(name, var->getData<string>());
	2281	else
	2282	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)",
	2283	<< "Unsupported variable of type " << var->type.getStringValue());
[498]	2284	}
	2285	catch (CNetCdfException& e)
	2286	{
	2287	StdString msg("On writing attributes of variable with name : ");
	2288	msg.append(name); msg.append("\n");
	2289	msg.append("In the context : ");
	2290	CContext* context = CContext::getCurrent() ;
	2291	msg.append(context->getId()); msg.append("\n");
	2292	msg.append(e.what());
	2293	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", << msg);
	2294	}
[488]	2295	}
	2296
[321]	2297	void CNc4DataOutput::syncFile_ (void)
	2298	{
[498]	2299	try
	2300	{
	2301	SuperClassWriter::sync() ;
	2302	}
	2303	catch (CNetCdfException& e)
	2304	{
	2305	StdString msg("On synchronizing the write among processes");
	2306	msg.append("In the context : ");
	2307	CContext* context = CContext::getCurrent() ;
	2308	msg.append(context->getId()); msg.append("\n");
	2309	msg.append(e.what());
	2310	ERROR("CNc4DataOutput::syncFile_ (void)", << msg);
	2311	}
[321]	2312	}
[219]	2313
[286]	2314	void CNc4DataOutput::closeFile_ (void)
	2315	{
[498]	2316	try
	2317	{
	2318	SuperClassWriter::close() ;
	2319	}
	2320	catch (CNetCdfException& e)
	2321	{
	2322	StdString msg("On closing file");
	2323	msg.append("In the context : ");
	2324	CContext* context = CContext::getCurrent() ;
	2325	msg.append(context->getId()); msg.append("\n");
	2326	msg.append(e.what());
	2327	ERROR("CNc4DataOutput::syncFile_ (void)", << msg);
	2328	}
	2329
[286]	2330	}
	2331
[219]	2332	//---------------------------------------------------------------
	2333
	2334	StdString CNc4DataOutput::getTimeStamp(void) const
	2335	{
	2336	const int buffer_size = 100;
	2337	time_t rawtime;
	2338	struct tm * timeinfo = NULL;
	2339	char buffer [buffer_size];
[1158]	2340	StdString formatStr;
	2341	if (file->time_stamp_format.isEmpty()) formatStr="%Y-%b-%d %H:%M:%S %Z" ;
	2342	else formatStr=file->time_stamp_format;
[219]	2343
[1158]	2344	// time ( &rawtime );
	2345	// timeinfo = localtime ( &rawtime );
[219]	2346	time ( &rawtime );
[1158]	2347	timeinfo = gmtime ( &rawtime );
	2348	strftime (buffer, buffer_size, formatStr.c_str(), timeinfo);
[219]	2349
	2350	return (StdString(buffer));
	2351	}
[488]	2352
[219]	2353	//---------------------------------------------------------------
[488]	2354
[347]	2355	void CNc4DataOutput::writeFieldData_ (CField* field)
[219]	2356	{
[707]	2357	CContext* context = CContext::getCurrent();
	2358	CContextServer* server = context->server;
	2359	CGrid* grid = field->grid;
[300]	2360
[1158]	2361	if (field->getNStep()<1)
	2362	{
	2363	return;
	2364	}
[952]	2365
[707]	2366	if (!grid->doGridHaveDataToWrite())
[1158]	2367	if (SuperClass::type == MULTI_FILE \|\| !isCollective)
	2368	{
	2369	return;
	2370	}
[488]	2371
[770]	2372	StdString fieldid = field->getFieldOutputName();
[286]	2373
[707]	2374	StdOStringStream oss;
	2375	string timeAxisId;
[1158]	2376	if (field->hasTimeInstant) timeAxisId = "time_instant";
	2377	else if (field->hasTimeCentered) timeAxisId = "time_centered";
[488]	2378
[802]	2379	StdString timeBoundId = getTimeCounterName() + "_bounds";
[449]	2380
[707]	2381	StdString timeAxisBoundId;
[1158]	2382	if (field->hasTimeInstant) timeAxisBoundId = "time_instant_bounds";
	2383	else if (field->hasTimeCentered) timeAxisBoundId = "time_centered_bounds";
[488]	2384
[707]	2385	if (!field->wasWritten())
	2386	{
[1158]	2387	if (appendMode && field->file->record_offset.isEmpty() &&
	2388	field->getOperationTimeType() != func::CFunctor::once)
[707]	2389	{
[1158]	2390	double factorUnit;
	2391	if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days)
	2392	factorUnit=context->getCalendar()->getDayLengthInSeconds() ;
	2393	else factorUnit=1 ;
	2394	field->resetNStep(getRecordFromTime(field->last_Write_srv,factorUnit) + 1);
[707]	2395	}
[488]	2396
[707]	2397	field->setWritten();
	2398	}
[488]	2399
	2400
[707]	2401	CArray<double,1> time_data(1);
	2402	CArray<double,1> time_data_bound(2);
	2403	CArray<double,1> time_counter(1);
	2404	CArray<double,1> time_counter_bound(2);
	2405
	2406	bool wtime = (field->getOperationTimeType() != func::CFunctor::once);
[1158]	2407	bool wtimeCounter =false ;
	2408	bool wtimeData =false ;
	2409
[707]	2410
[444]	2411	if (wtime)
	2412	{
[692]	2413	Time lastWrite = field->last_Write_srv;
	2414	Time lastLastWrite = field->lastlast_Write_srv;
	2415
[1158]	2416
	2417	if (field->hasTimeInstant)
	2418	{
	2419	time_data(0) = time_data_bound(1) = lastWrite;
[692]	2420	time_data_bound(0) = time_data_bound(1) = lastWrite;
[1158]	2421	if (timeCounterType==instant)
	2422	{
	2423	time_counter(0) = time_data(0);
	2424	time_counter_bound(0) = time_data_bound(0);
	2425	time_counter_bound(1) = time_data_bound(1);
	2426	wtimeCounter=true ;
	2427	}
	2428	if (hasTimeInstant) wtimeData=true ;
	2429	}
	2430	else if (field->hasTimeCentered)
[488]	2431	{
[1158]	2432	time_data(0) = (lastWrite + lastLastWrite) / 2;
[692]	2433	time_data_bound(0) = lastLastWrite;
	2434	time_data_bound(1) = lastWrite;
[1158]	2435	if (timeCounterType==centered)
	2436	{
	2437	time_counter(0) = time_data(0) ;
	2438	time_counter_bound(0) = time_data_bound(0) ;
	2439	time_counter_bound(1) = time_data_bound(1) ;
	2440	wtimeCounter=true ;
	2441	}
	2442	if (hasTimeCentered) wtimeData=true ;
[488]	2443	}
	2444
[1158]	2445	if (timeCounterType==record)
	2446	{
[692]	2447	time_counter(0) = field->getNStep() - 1;
[1158]	2448	time_counter_bound(0) = time_counter_bound(1) = field->getNStep() - 1;
	2449	wtimeCounter=true ;
	2450	}
[692]	2451
[1158]	2452	if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days)
[692]	2453	{
[1158]	2454	double secByDay=context->getCalendar()->getDayLengthInSeconds() ;
	2455	time_data/=secByDay;
	2456	time_data_bound/=secByDay;
	2457	time_counter/=secByDay;
	2458	time_counter_bound/=secByDay;
[692]	2459	}
	2460	}
	2461
[707]	2462	bool isRoot = (server->intraCommRank == 0);
[488]	2463
[464]	2464	if (!field->scale_factor.isEmpty() \|\| !field->add_offset.isEmpty())
	2465	{
[707]	2466	double scaleFactor = 1.0;
	2467	double addOffset = 0.0;
	2468	if (!field->scale_factor.isEmpty()) scaleFactor = field->scale_factor;
	2469	if (!field->add_offset.isEmpty()) addOffset = field->add_offset;
	2470	field->scaleFactorAddOffset(scaleFactor, addOffset);
[464]	2471	}
[488]	2472
[498]	2473	try
[219]	2474	{
[676]	2475	size_t writtenSize;
	2476	if (field->getUseCompressedOutput())
	2477	writtenSize = grid->getNumberWrittenIndexes();
	2478	else
	2479	writtenSize = grid->getWrittenDataSize();
	2480
	2481	CArray<double,1> fieldData(writtenSize);
[567]	2482	if (!field->default_value.isEmpty()) fieldData = field->default_value;
[676]	2483
	2484	if (field->getUseCompressedOutput())
	2485	field->outputCompressedField(fieldData);
	2486	else
	2487	field->outputField(fieldData);
	2488
[707]	2489	if (!field->prec.isEmpty() && field->prec == 2) fieldData = round(fieldData);
[567]	2490
	2491	switch (SuperClass::type)
[498]	2492	{
[567]	2493	case (MULTI_FILE) :
	2494	{
[1158]	2495	CTimer::get("Files : writing data").resume();
[692]	2496	SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1);
[1158]	2497	CTimer::get("Files : writing data").suspend();
[567]	2498	if (wtime)
	2499	{
[1158]	2500	CTimer::get("Files : writing time axis").resume();
	2501	if ( wtimeData)
[692]	2502	{
[1158]	2503	SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot);
	2504	SuperClassWriter::writeTimeAxisDataBounds(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot);
	2505	}
	2506	if (wtimeCounter)
	2507	{
	2508	SuperClassWriter::writeTimeAxisData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1,isRoot);
	2509	if (timeCounterType!=record) SuperClassWriter::writeTimeAxisDataBounds(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot);
[692]	2510	}
[1158]	2511	CTimer::get("Files : writing time axis").suspend();
[567]	2512	}
[707]	2513	break;
[567]	2514	}
	2515	case (ONE_FILE) :
	2516	{
[464]	2517
[676]	2518	std::vector<StdSize> start, count;
[464]	2519
[676]	2520	if (field->getUseCompressedOutput())
	2521	{
	2522	if (grid->isCompressible())
	2523	{
	2524	start.push_back(grid->getOffsetWrittenIndexes());
	2525	count.push_back(grid->getNumberWrittenIndexes());
	2526	}
	2527	else
	2528	{
[887]	2529	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
[676]	2530	std::vector<StdString> domainList = grid->getDomainList();
	2531	std::vector<StdString> axisList = grid->getAxisList();
	2532	int numElement = axisDomainOrder.numElements();
	2533	int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1;
[1553]	2534	int idx = domainList.size() * 2 + axisList.size() - 1;
[464]	2535
[1553]	2536	start.reserve(idx+1);
	2537	count.reserve(idx+1);
[676]	2538
	2539	for (int i = numElement - 1; i >= 0; --i)
	2540	{
[887]	2541	if (2 == axisDomainOrder(i))
[676]	2542	{
	2543	CDomain* domain = CDomain::get(domainList[idxDomain]);
	2544
	2545	if (domain->isCompressible())
	2546	{
[1249]	2547	start.push_back(domain->getOffsetWrittenIndexes(comm_file));
	2548	count.push_back(domain->getNumberWrittenIndexes(comm_file));
[710]	2549	idx -= 2;
[676]	2550	}
	2551	else
	2552	{
[710]	2553	if ((domain->type) != CDomain::type_attr::unstructured)
	2554	{
[1553]	2555	start.push_back(domain->jbegin);
	2556	count.push_back(domain->nj);
[710]	2557	}
	2558	--idx;
[1553]	2559	start.push_back(domain->ibegin);
	2560	count.push_back(domain->ni);
[710]	2561	--idx;
[676]	2562	}
	2563	--idxDomain;
	2564	}
[887]	2565	else if (1 == axisDomainOrder(i))
[676]	2566	{
	2567	CAxis* axis = CAxis::get(axisList[idxAxis]);
	2568
	2569	if (axis->isCompressible())
	2570	{
[1249]	2571	start.push_back(axis->getOffsetWrittenIndexes(comm_file));
	2572	count.push_back(axis->getNumberWrittenIndexes(comm_file));
[676]	2573	}
	2574	else
	2575	{
[1553]	2576	start.push_back(axis->begin);
	2577	count.push_back(axis->n);
[676]	2578	}
	2579	--idxAxis;
	2580	--idx;
	2581	}
	2582	}
[1158]	2583	}
[676]	2584	}
	2585	else
[498]	2586	{
[887]	2587	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
[705]	2588	std::vector<StdString> domainList = grid->getDomainList();
	2589	std::vector<StdString> axisList = grid->getAxisList();
	2590	int numElement = axisDomainOrder.numElements();
	2591	int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1;
[1553]	2592	int idx = domainList.size() * 2 + axisList.size() - 1;
[705]	2593
[1553]	2594	start.reserve(idx+1);
	2595	count.reserve(idx+1);
[705]	2596
	2597	for (int i = numElement - 1; i >= 0; --i)
	2598	{
[887]	2599	if (2 == axisDomainOrder(i))
[705]	2600	{
	2601	CDomain* domain = CDomain::get(domainList[idxDomain]);
[710]	2602	if ((domain->type) != CDomain::type_attr::unstructured)
[705]	2603	{
[1553]	2604	start.push_back(domain->jbegin);
	2605	count.push_back(domain->nj);
[705]	2606	}
	2607	--idx ;
[1143]	2608
[1553]	2609	start.push_back(domain->ibegin);
	2610	count.push_back(domain->ni);
[705]	2611	--idx ;
	2612	--idxDomain;
	2613	}
[887]	2614	else if (1 == axisDomainOrder(i))
[705]	2615	{
[1143]	2616	CAxis* axis = CAxis::get(axisList[idxAxis]);
[1559]	2617	start.push_back(axis->begin);
	2618	count.push_back(axis->n);
[705]	2619	--idx;
[1025]	2620	--idxAxis;
[887]	2621	}
	2622	else
	2623	{
	2624	if (1 == axisDomainOrder.numElements())
	2625	{
	2626	start.push_back(0);
	2627	count.push_back(1);
	2628	}
	2629	--idx;
	2630	}
[705]	2631	}
[498]	2632	}
[488]	2633
[1158]	2634
	2635	CTimer::get("Files : writing data").resume();
[676]	2636	SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1, &start, &count);
[1158]	2637	CTimer::get("Files : writing data").suspend();
	2638
	2639	if (wtime)
	2640	{
	2641	CTimer::get("Files : writing time axis").resume();
	2642	if ( wtimeData)
[692]	2643	{
[1158]	2644	SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot);
	2645	SuperClassWriter::writeTimeAxisDataBounds(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot);
[692]	2646	}
[1158]	2647	if (wtimeCounter)
	2648	{
	2649	SuperClassWriter::writeTimeAxisData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1,isRoot);
	2650	if (timeCounterType!=record) SuperClassWriter::writeTimeAxisDataBounds(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot);
[586]	2651
[1158]	2652	}
	2653	CTimer::get("Files : writing time axis").suspend();
	2654	}
	2655
[586]	2656	break;
[286]	2657	}
[567]	2658	}
[219]	2659	}
[498]	2660	catch (CNetCdfException& e)
	2661	{
	2662	StdString msg("On writing field data: ");
	2663	msg.append(fieldid); msg.append("\n");
	2664	msg.append("In the context : ");
	2665	msg.append(context->getId()); msg.append("\n");
	2666	msg.append(e.what());
[1130]	2667	ERROR("CNc4DataOutput::writeFieldData_ (CField* field)", << msg);
[498]	2668	}
[219]	2669	}
	2670
	2671	//---------------------------------------------------------------
	2672
	2673	void CNc4DataOutput::writeTimeAxis_
[347]	2674	(CField* field,
[1542]	2675	const std::shared_ptr<CCalendar> cal)
[219]	2676	{
	2677	StdOStringStream oss;
[1158]	2678	bool createInstantAxis=false ;
	2679	bool createCenteredAxis=false ;
	2680	bool createTimeCounterAxis=false ;
	2681
[645]	2682	if (field->getOperationTimeType() == func::CFunctor::once) return ;
[488]	2683
	2684
[1158]	2685	StdString axisId ;
	2686	StdString axisBoundId;
[802]	2687	StdString timeid(getTimeCounterName());
[614]	2688	StdString timeBoundId("axis_nbounds");
[488]	2689
[1158]	2690	StdString strTimeUnits ;
	2691	if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days) strTimeUnits="days since " ;
	2692	else strTimeUnits="seconds since " ;
	2693
	2694	if (field->getOperationTimeType() == func::CFunctor::instant) field->hasTimeInstant = true;
	2695	if (field->getOperationTimeType() == func::CFunctor::centered) field->hasTimeCentered = true;
	2696
	2697
	2698	if (field->file->time_counter.isEmpty())
[488]	2699	{
[1158]	2700	if (timeCounterType==none) createTimeCounterAxis=true ;
	2701	if (field->hasTimeCentered)
	2702	{
	2703	timeCounterType=centered ;
	2704	if (!hasTimeCentered) createCenteredAxis=true ;
	2705	}
	2706	if (field->hasTimeInstant)
	2707	{
	2708	if (timeCounterType==none) timeCounterType=instant ;
	2709	if (!hasTimeInstant) createInstantAxis=true ;
	2710	}
[488]	2711	}
[1158]	2712	else if (field->file->time_counter==CFile::time_counter_attr::instant)
	2713	{
	2714	if (field->hasTimeCentered)
	2715	{
	2716	if (!hasTimeCentered) createCenteredAxis=true ;
	2717	}
	2718	if (field->hasTimeInstant)
	2719	{
	2720	if (timeCounterType==none) createTimeCounterAxis=true ;
	2721	timeCounterType=instant ;
	2722	if (!hasTimeInstant) createInstantAxis=true ;
	2723	}
	2724	}
	2725	else if (field->file->time_counter==CFile::time_counter_attr::centered)
	2726	{
	2727	if (field->hasTimeCentered)
	2728	{
	2729	if (timeCounterType==none) createTimeCounterAxis=true ;
	2730	timeCounterType=centered ;
	2731	if (!hasTimeCentered) createCenteredAxis=true ;
	2732	}
	2733	if (field->hasTimeInstant)
	2734	{
	2735	if (!hasTimeInstant) createInstantAxis=true ;
	2736	}
	2737	}
	2738	else if (field->file->time_counter==CFile::time_counter_attr::instant_exclusive)
	2739	{
	2740	if (field->hasTimeCentered)
	2741	{
	2742	if (!hasTimeCentered) createCenteredAxis=true ;
	2743	}
	2744	if (field->hasTimeInstant)
	2745	{
	2746	if (timeCounterType==none) createTimeCounterAxis=true ;
	2747	timeCounterType=instant ;
	2748	}
	2749	}
	2750	else if (field->file->time_counter==CFile::time_counter_attr::centered_exclusive)
	2751	{
	2752	if (field->hasTimeCentered)
	2753	{
	2754	if (timeCounterType==none) createTimeCounterAxis=true ;
	2755	timeCounterType=centered ;
	2756	}
	2757	if (field->hasTimeInstant)
	2758	{
	2759	if (!hasTimeInstant) createInstantAxis=true ;
	2760	}
	2761	}
	2762	else if (field->file->time_counter==CFile::time_counter_attr::exclusive)
	2763	{
	2764	if (field->hasTimeCentered)
	2765	{
	2766	if (timeCounterType==none) createTimeCounterAxis=true ;
	2767	if (timeCounterType==instant) createInstantAxis=true ;
	2768	timeCounterType=centered ;
	2769	}
	2770	if (field->hasTimeInstant)
	2771	{
	2772	if (timeCounterType==none)
	2773	{
	2774	createTimeCounterAxis=true ;
	2775	timeCounterType=instant ;
	2776	}
	2777	if (timeCounterType==centered)
	2778	{
	2779	if (!hasTimeInstant) createInstantAxis=true ;
	2780	}
	2781	}
	2782	}
	2783	else if (field->file->time_counter==CFile::time_counter_attr::none)
	2784	{
	2785	if (field->hasTimeCentered)
	2786	{
	2787	if (!hasTimeCentered) createCenteredAxis=true ;
	2788	}
	2789	if (field->hasTimeInstant)
	2790	{
	2791	if (!hasTimeInstant) createInstantAxis=true ;
	2792	}
	2793	}
	2794	else if (field->file->time_counter==CFile::time_counter_attr::record)
	2795	{
	2796	if (timeCounterType==none) createTimeCounterAxis=true ;
	2797	timeCounterType=record ;
	2798	if (field->hasTimeCentered)
	2799	{
	2800	if (!hasTimeCentered) createCenteredAxis=true ;
	2801	}
	2802	if (field->hasTimeInstant)
	2803	{
	2804	if (!hasTimeInstant) createInstantAxis=true ;
	2805	}
	2806	}
	2807
	2808	if (createInstantAxis)
	2809	{
	2810	axisId="time_instant" ;
	2811	axisBoundId="time_instant_bounds";
	2812	hasTimeInstant=true ;
	2813	}
[488]	2814
[1158]	2815	if (createCenteredAxis)
	2816	{
	2817	axisId="time_centered" ;
	2818	axisBoundId="time_centered_bounds";
	2819	hasTimeCentered=true ;
	2820	}
	2821
	2822
[498]	2823	try
[219]	2824	{
[1158]	2825	std::vector<StdString> dims;
	2826
	2827	if (createInstantAxis \|\| createCenteredAxis)
	2828	{
	2829	// Adding time_instant or time_centered
	2830	dims.push_back(timeid);
	2831	if (!SuperClassWriter::varExist(axisId))
	2832	{
	2833	SuperClassWriter::addVariable(axisId, NC_DOUBLE, dims);
[488]	2834
[1158]	2835	CDate timeOrigin=cal->getTimeOrigin() ;
	2836	StdOStringStream oss2;
	2837	StdString strInitdate=oss2.str() ;
	2838	StdString strTimeOrigin=timeOrigin.toString() ;
	2839	this->writeTimeAxisAttributes(axisId, cal->getType(),strTimeUnits+strTimeOrigin,
	2840	strTimeOrigin, axisBoundId);
	2841	}
[219]	2842
[1158]	2843	// Adding time_instant_bounds or time_centered_bounds variables
	2844	if (!SuperClassWriter::varExist(axisBoundId))
	2845	{
	2846	dims.clear() ;
	2847	dims.push_back(timeid);
	2848	dims.push_back(timeBoundId);
	2849	SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims);
	2850	}
[498]	2851	}
[488]	2852
[1158]	2853	if (createTimeCounterAxis)
[498]	2854	{
[692]	2855	// Adding time_counter
[1158]	2856	axisId = getTimeCounterName();
[802]	2857	axisBoundId = getTimeCounterName() + "_bounds";
[692]	2858	dims.clear();
	2859	dims.push_back(timeid);
[1158]	2860	if (!SuperClassWriter::varExist(axisId))
[692]	2861	{
[1158]	2862	SuperClassWriter::addVariable(axisId, NC_DOUBLE, dims);
	2863	SuperClassWriter::addAttribute("axis", string("T"), &axisId);
[488]	2864
[1158]	2865	if (field->file->time_counter.isEmpty() \|\|
	2866	(field->file->time_counter != CFile::time_counter_attr::record))
[692]	2867	{
	2868	CDate timeOrigin = cal->getTimeOrigin();
	2869	StdString strTimeOrigin = timeOrigin.toString();
[498]	2870
[1158]	2871	this->writeTimeAxisAttributes(axisId, cal->getType(),
	2872	strTimeUnits+strTimeOrigin,
[692]	2873	strTimeOrigin, axisBoundId);
	2874	}
	2875	}
	2876
	2877	// Adding time_counter_bound dimension
[1158]	2878	if (field->file->time_counter.isEmpty() \|\| (field->file->time_counter != CFile::time_counter_attr::record))
[692]	2879	{
	2880	if (!SuperClassWriter::varExist(axisBoundId))
	2881	{
	2882	dims.clear();
	2883	dims.push_back(timeid);
	2884	dims.push_back(timeBoundId);
	2885	SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims);
	2886	}
	2887	}
[498]	2888	}
[488]	2889	}
[498]	2890	catch (CNetCdfException& e)
[488]	2891	{
[498]	2892	StdString msg("On writing time axis data: ");
	2893	msg.append("In the context : ");
	2894	CContext* context = CContext::getCurrent() ;
	2895	msg.append(context->getId()); msg.append("\n");
	2896	msg.append(e.what());
	2897	ERROR("CNc4DataOutput::writeTimeAxis_ (CField* field, \
[1542]	2898	const std::shared_ptr<CCalendar> cal)", << msg);
[488]	2899	}
[219]	2900	}
	2901
	2902	//---------------------------------------------------------------
[488]	2903
[219]	2904	void CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name,
	2905	const StdString & calendar,
	2906	const StdString & units,
	2907	const StdString & time_origin,
[488]	2908	const StdString & time_bounds,
[219]	2909	const StdString & standard_name,
[613]	2910	const StdString & long_name)
[219]	2911	{
[498]	2912	try
	2913	{
	2914	SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name);
	2915	SuperClassWriter::addAttribute("long_name", long_name , &axis_name);
	2916	SuperClassWriter::addAttribute("calendar", calendar , &axis_name);
	2917	SuperClassWriter::addAttribute("units", units , &axis_name);
	2918	SuperClassWriter::addAttribute("time_origin", time_origin , &axis_name);
	2919	SuperClassWriter::addAttribute("bounds", time_bounds , &axis_name);
	2920	}
	2921	catch (CNetCdfException& e)
	2922	{
	2923	StdString msg("On writing time axis Attribute: ");
	2924	msg.append("In the context : ");
	2925	CContext* context = CContext::getCurrent() ;
	2926	msg.append(context->getId()); msg.append("\n");
	2927	msg.append(e.what());
	2928	ERROR("CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, \
[613]	2929	const StdString & calendar,\
	2930	const StdString & units, \
	2931	const StdString & time_origin, \
	2932	const StdString & time_bounds, \
	2933	const StdString & standard_name, \
	2934	const StdString & long_name)", << msg);
[498]	2935	}
[219]	2936	}
[488]	2937
[219]	2938	//---------------------------------------------------------------
	2939
	2940	void CNc4DataOutput::writeAxisAttributes(const StdString & axis_name,
	2941	const StdString & axis,
	2942	const StdString & standard_name,
	2943	const StdString & long_name,
	2944	const StdString & units,
	2945	const StdString & nav_model)
	2946	{
[498]	2947	try
	2948	{
[613]	2949	if (!axis.empty())
	2950	SuperClassWriter::addAttribute("axis" , axis , &axis_name);
	2951
[498]	2952	SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name);
	2953	SuperClassWriter::addAttribute("long_name" , long_name , &axis_name);
	2954	SuperClassWriter::addAttribute("units" , units , &axis_name);
[973]	2955	// SuperClassWriter::addAttribute("nav_model" , nav_model , &axis_name);
[498]	2956	}
	2957	catch (CNetCdfException& e)
	2958	{
	2959	StdString msg("On writing Axis Attribute: ");
	2960	msg.append("In the context : ");
	2961	CContext* context = CContext::getCurrent() ;
	2962	msg.append(context->getId()); msg.append("\n");
	2963	msg.append(e.what());
	2964	ERROR("CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, \
[613]	2965	const StdString & axis, \
	2966	const StdString & standard_name, \
	2967	const StdString & long_name, \
	2968	const StdString & units, \
	2969	const StdString & nav_model)", << msg);
[498]	2970	}
[219]	2971	}
	2972
	2973	//---------------------------------------------------------------
[488]	2974
[219]	2975	void CNc4DataOutput::writeLocalAttributes
	2976	(int ibegin, int ni, int jbegin, int nj, StdString domid)
	2977	{
[498]	2978	try
	2979	{
[318]	2980	SuperClassWriter::addAttribute(StdString("ibegin").append(domid), ibegin);
	2981	SuperClassWriter::addAttribute(StdString("ni" ).append(domid), ni);
	2982	SuperClassWriter::addAttribute(StdString("jbegin").append(domid), jbegin);
	2983	SuperClassWriter::addAttribute(StdString("nj" ).append(domid), nj);
[498]	2984	}
	2985	catch (CNetCdfException& e)
	2986	{
	2987	StdString msg("On writing Local Attributes: ");
	2988	msg.append("In the context : ");
	2989	CContext* context = CContext::getCurrent() ;
	2990	msg.append(context->getId()); msg.append("\n");
	2991	msg.append(e.what());
	2992	ERROR("CNc4DataOutput::writeLocalAttributes \
	2993	(int ibegin, int ni, int jbegin, int nj, StdString domid)", << msg);
	2994	}
	2995
[219]	2996	}
	2997
[628]	2998	void CNc4DataOutput::writeLocalAttributes_IOIPSL(const StdString& dimXid, const StdString& dimYid,
	2999	int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)
[391]	3000	{
	3001	CArray<int,1> array(2) ;
	3002
[498]	3003	try
	3004	{
	3005	SuperClassWriter::addAttribute("DOMAIN_number_total",size ) ;
	3006	SuperClassWriter::addAttribute("DOMAIN_number", rank) ;
[629]	3007	array = SuperClassWriter::getDimension(dimXid) + 1, SuperClassWriter::getDimension(dimYid) + 1;
[498]	3008	SuperClassWriter::addAttribute("DOMAIN_dimensions_ids",array) ;
	3009	array=ni_glo,nj_glo ;
	3010	SuperClassWriter::addAttribute("DOMAIN_size_global", array) ;
	3011	array=ni,nj ;
	3012	SuperClassWriter::addAttribute("DOMAIN_size_local", array) ;
[819]	3013	array=ibegin+1,jbegin+1 ;
[498]	3014	SuperClassWriter::addAttribute("DOMAIN_position_first", array) ;
[819]	3015	array=ibegin+ni-1+1,jbegin+nj-1+1 ;
[498]	3016	SuperClassWriter::addAttribute("DOMAIN_position_last",array) ;
	3017	array=0,0 ;
	3018	SuperClassWriter::addAttribute("DOMAIN_halo_size_start", array) ;
	3019	SuperClassWriter::addAttribute("DOMAIN_halo_size_end", array);
	3020	SuperClassWriter::addAttribute("DOMAIN_type",string("box")) ;
	3021	/*
	3022	SuperClassWriter::addAttribute("DOMAIN_DIM_N001",string("x")) ;
	3023	SuperClassWriter::addAttribute("DOMAIN_DIM_N002",string("y")) ;
	3024	SuperClassWriter::addAttribute("DOMAIN_DIM_N003",string("axis_A")) ;
	3025	SuperClassWriter::addAttribute("DOMAIN_DIM_N004",string("time_counter")) ;
	3026	*/
	3027	}
	3028	catch (CNetCdfException& e)
	3029	{
[628]	3030	StdString msg("On writing Local Attributes IOIPSL \n");
[498]	3031	msg.append("In the context : ");
	3032	CContext* context = CContext::getCurrent() ;
	3033	msg.append(context->getId()); msg.append("\n");
	3034	msg.append(e.what());
	3035	ERROR("CNc4DataOutput::writeLocalAttributes_IOIPSL \
	3036	(int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)", << msg);
	3037	}
[391]	3038	}
[219]	3039	//---------------------------------------------------------------
	3040
	3041	void CNc4DataOutput:: writeFileAttributes(const StdString & name,
	3042	const StdString & description,
	3043	const StdString & conventions,
	3044	const StdString & production,
	3045	const StdString & timeStamp)
	3046	{
[498]	3047	try
	3048	{
	3049	SuperClassWriter::addAttribute("name" , name);
	3050	SuperClassWriter::addAttribute("description", description);
[613]	3051	SuperClassWriter::addAttribute("title" , description);
	3052	SuperClassWriter::addAttribute("Conventions", conventions);
[1158]	3053	// SuperClassWriter::addAttribute("production" , production);
	3054
	3055	StdString timeStampStr ;
	3056	if (file->time_stamp_name.isEmpty()) timeStampStr="timeStamp" ;
	3057	else timeStampStr=file->time_stamp_name ;
	3058	SuperClassWriter::addAttribute(timeStampStr, timeStamp);
	3059
	3060	StdString uuidName ;
	3061	if (file->uuid_name.isEmpty()) uuidName="uuid" ;
	3062	else uuidName=file->uuid_name ;
	3063
	3064	if (file->uuid_format.isEmpty()) SuperClassWriter::addAttribute(uuidName, getUuidStr());
	3065	else SuperClassWriter::addAttribute(uuidName, getUuidStr(file->uuid_format));
	3066
[498]	3067	}
	3068	catch (CNetCdfException& e)
	3069	{
	3070	StdString msg("On writing File Attributes \n ");
	3071	msg.append("In the context : ");
	3072	CContext* context = CContext::getCurrent() ;
	3073	msg.append(context->getId()); msg.append("\n");
	3074	msg.append(e.what());
	3075	ERROR("CNc4DataOutput:: writeFileAttributes(const StdString & name, \
	3076	const StdString & description, \
	3077	const StdString & conventions, \
	3078	const StdString & production, \
	3079	const StdString & timeStamp)", << msg);
	3080	}
[219]	3081	}
	3082
	3083	//---------------------------------------------------------------
	3084
	3085	void CNc4DataOutput::writeMaskAttributes(const StdString & mask_name,
	3086	int data_dim,
	3087	int data_ni,
	3088	int data_nj,
	3089	int data_ibegin,
	3090	int data_jbegin)
	3091	{
[498]	3092	try
	3093	{
	3094	SuperClassWriter::addAttribute("data_dim" , data_dim , &mask_name);
	3095	SuperClassWriter::addAttribute("data_ni" , data_ni , &mask_name);
	3096	SuperClassWriter::addAttribute("data_nj" , data_nj , &mask_name);
	3097	SuperClassWriter::addAttribute("data_ibegin", data_ibegin, &mask_name);
	3098	SuperClassWriter::addAttribute("data_jbegin", data_jbegin, &mask_name);
	3099	}
	3100	catch (CNetCdfException& e)
	3101	{
	3102	StdString msg("On writing Mask Attributes \n ");
	3103	msg.append("In the context : ");
	3104	CContext* context = CContext::getCurrent() ;
	3105	msg.append(context->getId()); msg.append("\n");
	3106	msg.append(e.what());
	3107	ERROR("CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, \
	3108	int data_dim, \
	3109	int data_ni, \
	3110	int data_nj, \
	3111	int data_ibegin, \
	3112	int data_jbegin)", << msg);
	3113	}
[219]	3114	}
	3115
	3116	///--------------------------------------------------------------
	3117
[1158]	3118	StdSize CNc4DataOutput::getRecordFromTime(Time time, double factorUnit)
[707]	3119	{
	3120	std::map<Time, StdSize>::const_iterator it = timeToRecordCache.find(time);
	3121	if (it == timeToRecordCache.end())
	3122	{
[802]	3123	StdString timeAxisBoundsId(getTimeCounterName() + "_bounds");
[1158]	3124	if (!SuperClassWriter::varExist(timeAxisBoundsId)) timeAxisBoundsId = "time_centered_bounds";
	3125	if (!SuperClassWriter::varExist(timeAxisBoundsId)) timeAxisBoundsId = "time_instant_bounds";
[707]	3126
	3127	CArray<double,2> timeAxisBounds;
[1158]	3128	std::vector<StdSize> dimSize(SuperClassWriter::getDimensions(timeAxisBoundsId)) ;
	3129
[707]	3130	StdSize record = 0;
	3131	double dtime(time);
[1158]	3132	for (int n = dimSize[0] - 1; n >= 0; n--)
[707]	3133	{
[1158]	3134	SuperClassWriter::getTimeAxisBounds(timeAxisBounds, timeAxisBoundsId, isCollective, n);
	3135	timeAxisBounds*=factorUnit ;
	3136	if (timeAxisBounds(1, 0) < dtime)
[707]	3137	{
	3138	record = n + 1;
	3139	break;
	3140	}
	3141	}
	3142	it = timeToRecordCache.insert(std::make_pair(time, record)).first;
	3143	}
	3144	return it->second;
	3145	}
[774]	3146
	3147	///--------------------------------------------------------------
	3148
	3149	bool CNc4DataOutput::isWrittenDomain(const std::string& domainName) const
	3150	{
	3151	return (this->writtenDomains.find(domainName) != this->writtenDomains.end());
	3152	}
	3153
	3154	bool CNc4DataOutput::isWrittenCompressedDomain(const std::string& domainName) const
	3155	{
	3156	return (this->writtenCompressedDomains.find(domainName) != this->writtenCompressedDomains.end());
	3157	}
	3158
	3159	bool CNc4DataOutput::isWrittenAxis(const std::string& axisName) const
	3160	{
	3161	return (this->writtenAxis.find(axisName) != this->writtenAxis.end());
	3162	}
	3163
	3164	bool CNc4DataOutput::isWrittenCompressedAxis(const std::string& axisName) const
	3165	{
	3166	return (this->writtenCompressedAxis.find(axisName) != this->writtenCompressedAxis.end());
	3167	}
	3168
[887]	3169	bool CNc4DataOutput::isWrittenScalar(const std::string& scalarName) const
	3170	{
	3171	return (this->writtenScalar.find(scalarName) != this->writtenScalar.end());
	3172	}
	3173
[774]	3174	void CNc4DataOutput::setWrittenDomain(const std::string& domainName)
	3175	{
	3176	this->writtenDomains.insert(domainName);
	3177	}
	3178
	3179	void CNc4DataOutput::setWrittenCompressedDomain(const std::string& domainName)
	3180	{
	3181	this->writtenCompressedDomains.insert(domainName);
	3182	}
	3183
	3184	void CNc4DataOutput::setWrittenAxis(const std::string& axisName)
	3185	{
	3186	this->writtenAxis.insert(axisName);
	3187	}
	3188
	3189	void CNc4DataOutput::setWrittenCompressedAxis(const std::string& axisName)
	3190	{
	3191	this->writtenCompressedAxis.insert(axisName);
	3192	}
[887]	3193
	3194	void CNc4DataOutput::setWrittenScalar(const std::string& scalarName)
	3195	{
	3196	this->writtenScalar.insert(scalarName);
	3197	}
[335]	3198	} // namespace xios

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