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nc4_data_output.cpp @ 1130

Last change on this file since 1130 was 1130, checked in by oabramkina, 7 years ago

Two-level server: merging new grid functionalities and changes in the communication protocol (e.g. non-blocking context finalize, registries, oasis).

Tests on curie: test_client, test_complete, nemo (test_xios2_cmip6.exe).

To do: non-structured grid, check reading, possible bug in client/server initialization (?).

Property copyright set to
Software name : XIOS (Xml I/O Server)
http://forge.ipsl.jussieu.fr/ioserver
Creation date : January 2009
Licence : CeCCIL version2
see license file in root directory : Licence_CeCILL_V2-en.txt
or http://www.cecill.info/licences/Licence_CeCILL_V2-en.html
Holder : CEA/LSCE (Laboratoire des Sciences du CLimat et de l'Environnement)
CNRS/IPSL (Institut Pierre Simon Laplace)
Project Manager : Yann Meurdesoif
yann.meurdesoif@cea.fr
Property svn:executable set to *

File size: 125.5 KB

Line
1	#include "nc4_data_output.hpp"
2
3	#include <boost/lexical_cast.hpp>
4	#include "attribute_template.hpp"
5	#include "group_template.hpp"
6
7	#include "file.hpp"
8	#include "calendar.hpp"
9	#include "context.hpp"
10	#include "context_server.hpp"
11	#include "netCdfException.hpp"
12	#include "exception.hpp"
13
14	namespace xios
15	{
16	/// ////////////////////// Dfinitions ////////////////////// ///
17	CNc4DataOutput::CNc4DataOutput
18	(const StdString & filename, bool exist)
19	: SuperClass()
20	, SuperClassWriter(filename, exist)
21	, filename(filename)
22	{
23	SuperClass::type = MULTI_FILE;
24	}
25
26	CNc4DataOutput::CNc4DataOutput
27	(const StdString & filename, bool exist, bool useClassicFormat, bool useCFConvention,
28	MPI_Comm comm_file, bool multifile, bool isCollective, const StdString& timeCounterName)
29	: SuperClass()
30	, SuperClassWriter(filename, exist, useClassicFormat, useCFConvention, &comm_file, multifile, timeCounterName)
31	, comm_file(comm_file)
32	, filename(filename)
33	, isCollective(isCollective)
34	{
35	SuperClass::type = (multifile) ? MULTI_FILE : ONE_FILE;
36	}
37
38	CNc4DataOutput::~CNc4DataOutput(void)
39	{ /* Ne rien faire de plus */ }
40
41	///--------------------------------------------------------------
42
43	const StdString & CNc4DataOutput::getFileName(void) const
44	{
45	return (this->filename);
46	}
47
48	//---------------------------------------------------------------
49
50	void CNc4DataOutput::writeDomain_(CDomain* domain)
51	{
52	domain->computeWrittenIndex();
53	if (domain->type == CDomain::type_attr::unstructured)
54	{
55	if (SuperClassWriter::useCFConvention)
56	writeUnstructuredDomain(domain) ;
57	else
58	writeUnstructuredDomainUgrid(domain) ;
59	return ;
60	}
61
62
63	CContext* context = CContext::getCurrent() ;
64	CContextServer* server=context->server ;
65
66	if (domain->IsWritten(this->filename)) return;
67	domain->checkAttributes();
68
69	if (domain->isEmpty())
70	if (SuperClass::type==MULTI_FILE) return;
71
72	std::vector<StdString> dim0, dim1;
73	StdString domid = domain->getDomainOutputName();
74	StdString appendDomid = (singleDomain) ? "" : "_"+domid ;
75	if (isWrittenDomain(domid)) return ;
76	else setWrittenDomain(domid);
77
78	// const std::vector<int>& local_size_write = domain->getLocalWriteSize();
79	// const std::vector<int>& global_size_write = domain->getGlobalWriteSize();
80	// const std::vector<int>& start_write = domain->getStartWriteIndex();
81	// const std::vector<int>& count_write = domain->getCountWriteIndex();
82	int nvertex = (domain->nvertex.isEmpty()) ? 0 : domain->nvertex;
83
84	StdString dimXid, dimYid ;
85
86	bool isRegularDomain = (domain->type == CDomain::type_attr::rectilinear);
87	switch (domain->type)
88	{
89	case CDomain::type_attr::curvilinear :
90	dimXid = StdString("x").append(appendDomid);
91	dimYid = StdString("y").append(appendDomid);
92	break ;
93	case CDomain::type_attr::rectilinear :
94	dimXid = StdString("lon").append(appendDomid);
95	dimYid = StdString("lat").append(appendDomid);
96	break;
97	}
98
99	StdString dimVertId = StdString("nvertex").append(appendDomid);
100
101	string lonid,latid,bounds_lonid,bounds_latid ;
102	string areaId = "area" + appendDomid;
103	/*
104	StdString lonid_loc = (server->intraCommSize > 1)
105	? StdString("lon").append(appendDomid).append("_local")
106	: lonid;
107	StdString latid_loc = (server->intraCommSize > 1)
108	? StdString("lat").append(appendDomid).append("_local")
109	: latid;
110	*/
111
112	CArray<size_t, 1>& indexToWrite = domain->localIndexToWriteOnServer;
113	int nbWritten = indexToWrite.numElements();
114	CArray<double,1> writtenLat, writtenLon;
115	CArray<double,2> writtenBndsLat, writtenBndsLon;
116	CArray<double,1> writtenArea;
117
118	if (domain->hasLonLat)
119	{
120	writtenLat.resize(nbWritten);
121	writtenLon.resize(nbWritten);
122	for (int idx = 0; idx < nbWritten; ++idx)
123	{
124	writtenLat(idx) = domain->latvalue(indexToWrite(idx));
125	writtenLon(idx) = domain->lonvalue(indexToWrite(idx));
126	}
127
128
129	if (domain->hasBounds)
130	{
131	int nvertex = domain->nvertex, idx;
132	writtenBndsLat.resize(nvertex, nbWritten);
133	writtenBndsLon.resize(nvertex, nbWritten);
134	CArray<double,2>& boundslat = domain->bounds_latvalue;
135	CArray<double,2>& boundslon = domain->bounds_lonvalue;
136	for (idx = 0; idx < nbWritten; ++idx)
137	for (int nv = 0; nv < nvertex; ++nv)
138	{
139	writtenBndsLat(nv, idx) = boundslat(nv, int(indexToWrite(idx)));
140	writtenBndsLon(nv, idx) = boundslon(nv, int(indexToWrite(idx)));
141	}
142	}
143	}
144
145	if (domain->hasArea)
146	{
147	writtenArea.resize(nbWritten);
148	for (int idx = 0; idx < nbWritten; ++idx)
149	{
150	writtenArea(idx) = domain->areavalue(indexToWrite(idx));
151	}
152	}
153
154	try
155	{
156	switch (SuperClass::type)
157	{
158	case (MULTI_FILE) :
159	{
160	// if (domain->isEmpty()) return;
161
162	if (server->intraCommSize > 1)
163	{
164	// SuperClassWriter::addDimension(lonid, domain->zoom_ni.getValue());
165	// SuperClassWriter::addDimension(latid, domain->zoom_nj.getValue());
166	}
167
168	switch (domain->type)
169	{
170	case CDomain::type_attr::curvilinear :
171	dim0.push_back(dimYid); dim0.push_back(dimXid);
172	lonid = StdString("nav_lon").append(appendDomid);
173	latid = StdString("nav_lat").append(appendDomid);
174	break ;
175	case CDomain::type_attr::rectilinear :
176	lonid = StdString("lon").append(appendDomid);
177	latid = StdString("lat").append(appendDomid);
178	dim0.push_back(dimYid);
179	dim1.push_back(dimXid);
180	break;
181	}
182
183	bounds_lonid = StdString("bounds_lon").append(appendDomid);
184	bounds_latid = StdString("bounds_lat").append(appendDomid);
185
186	SuperClassWriter::addDimension(dimXid, domain->zoom_ni);
187	SuperClassWriter::addDimension(dimYid, domain->zoom_nj);
188
189	if (domain->hasBounds)
190	SuperClassWriter::addDimension(dimVertId, domain->nvertex);
191
192	if (server->intraCommSize > 1)
193	{
194	this->writeLocalAttributes(domain->zoom_ibegin,
195	domain->zoom_ni,
196	domain->zoom_jbegin,
197	domain->zoom_nj,
198	appendDomid);
199
200	if (singleDomain)
201	this->writeLocalAttributes_IOIPSL(dimXid, dimYid,
202	domain->zoom_ibegin,
203	domain->zoom_ni,
204	domain->zoom_jbegin,
205	domain->zoom_nj,
206	domain->ni_glo,domain->nj_glo,
207	server->intraCommRank,server->intraCommSize);
208	}
209
210	if (domain->hasLonLat)
211	{
212	switch (domain->type)
213	{
214	case CDomain::type_attr::curvilinear :
215	SuperClassWriter::addVariable(latid, NC_FLOAT, dim0);
216	SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0);
217	break ;
218	case CDomain::type_attr::rectilinear :
219	SuperClassWriter::addVariable(latid, NC_FLOAT, dim0);
220	SuperClassWriter::addVariable(lonid, NC_FLOAT, dim1);
221	break ;
222	}
223
224	this->writeAxisAttributes(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid);
225	this->writeAxisAttributes(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid);
226
227	if (domain->hasBounds)
228	{
229	SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid);
230	SuperClassWriter::addAttribute("bounds", bounds_latid, &latid);
231
232	dim0.clear();
233	dim0.push_back(dimYid);
234	dim0.push_back(dimXid);
235	dim0.push_back(dimVertId);
236	SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0);
237	SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0);
238	}
239	}
240
241	dim0.clear();
242	dim0.push_back(dimYid);
243	dim0.push_back(dimXid);
244
245
246	// supress mask if (server->intraCommSize > 1)
247	// supress mask {
248	// supress mask SuperClassWriter::addVariable(maskid, NC_INT, dim0);
249	// supress mask
250	// supress mask this->writeMaskAttributes(maskid,
251	// supress mask domain->data_dim.getValue()/*,
252	// supress mask domain->data_ni.getValue(),
253	// supress mask domain->data_nj.getValue(),
254	// supress mask domain->data_ibegin.getValue(),
255	// supress mask domain->data_jbegin.getValue()*/);
256	// supress mask }
257
258	//SuperClassWriter::setDefaultValue(maskid, &dvm);
259
260	if (domain->hasArea)
261	{
262	SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0);
263	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
264	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
265	}
266
267	SuperClassWriter::definition_end();
268
269	if (domain->hasLonLat)
270	{
271	// CArray<size_t, 1>& indexToWrite = domain->localIndexToWriteOnServer;
272	// int nbWritten = indexToWrite.numElements();
273	// CArray<double,1> writtenLat(nbWritten), writtenLon(nbWritten);
274	// for (int idx = 0; idx < nbWritten; ++idx)
275	// {
276	// writtenLat(idx) = domain->latvalue(indexToWrite(idx));
277	// writtenLon(idx) = domain->lonvalue(indexToWrite(idx));
278	// }
279	switch (domain->type)
280	{
281	case CDomain::type_attr::curvilinear :
282
283	// SuperClassWriter::writeData(domain->latvalue, latid, isCollective, 0);
284	// SuperClassWriter::writeData(domain->lonvalue, lonid, isCollective, 0);
285	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0);
286	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0);
287	break;
288	case CDomain::type_attr::rectilinear :
289	// CArray<double,1> lat = domain->latvalue(Range(fromStart,toEnd,domain->zoom_ni)) ;
290	// SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0);
291	// CArray<double,1> lon = domain->lonvalue(Range(0,domain->zoom_ni-1)) ;
292	// // CArray<double,1> lon = domain->lonvalue(Range(0,local_size_write[1]-1)) ;
293	// SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0);
294
295	CArray<double,1> lat = writtenLat(Range(fromStart,toEnd,domain->zoom_ni)) ;
296	SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0);
297	CArray<double,1> lon = writtenLon(Range(0,domain->zoom_ni-1)) ;
298	// CArray<double,1> lon = domain->lonvalue(Range(0,local_size_write[1]-1)) ;
299	SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0);
300	break;
301	}
302
303	if (domain->hasBounds)
304	{
305	// CArray<double,2> writtenBndsLat(nbWritten,2), writtenBndsLon(nbWritten,2);
306	// for (int idx = 0; idx < nbWritten; ++idx)
307	// for (int nv = 0; nv < domain->nvertex; ++nv)
308	// {
309	// writtenBndsLat(idx) = domain->bounds_latvalue(nv, indexToWrite(idx));
310	// writtenBndsLon(idx) = domain->bounds_lonvalue(nv, indexToWrite(idx));
311	// }
312
313	// SuperClassWriter::writeData(domain->bounds_lonvalue, bounds_lonid, isCollective, 0);
314	// SuperClassWriter::writeData(domain->bounds_latvalue, bounds_latid, isCollective, 0);
315	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0);
316	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0);
317	}
318	}
319
320	if (domain->hasArea)
321	{
322	// CArray<size_t, 1>& indexToWrite = domain->localIndexToWriteOnServer;
323	// int nbWritten = indexToWrite.numElements();
324	// CArray<double,1> writtenArea(nbWritten);
325	// for (int idx = 0; idx < nbWritten; ++idx)
326	// {
327	// writtenArea(idx) = domain->areavalue(indexToWrite(idx));
328	// }
329
330	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0);
331	// SuperClassWriter::writeData(domain->areavalue, areaId, isCollective, 0);
332	}
333
334	SuperClassWriter::definition_start();
335
336	break;
337	}
338	case (ONE_FILE) :
339	{
340	SuperClassWriter::addDimension(dimXid, domain->global_zoom_ni);
341	SuperClassWriter::addDimension(dimYid, domain->global_zoom_nj);
342
343	if (domain->hasBounds)
344	SuperClassWriter::addDimension(dimVertId, domain->nvertex);
345
346	if (domain->hasLonLat)
347	{
348	switch (domain->type)
349	{
350	case CDomain::type_attr::curvilinear :
351	dim0.push_back(dimYid); dim0.push_back(dimXid);
352	lonid = StdString("nav_lon").append(appendDomid);
353	latid = StdString("nav_lat").append(appendDomid);
354	SuperClassWriter::addVariable(latid, NC_FLOAT, dim0);
355	SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0);
356	break;
357
358	case CDomain::type_attr::rectilinear :
359	dim0.push_back(dimYid);
360	dim1.push_back(dimXid);
361	lonid = StdString("lon").append(appendDomid);
362	latid = StdString("lat").append(appendDomid);
363	SuperClassWriter::addVariable(latid, NC_FLOAT, dim0);
364	SuperClassWriter::addVariable(lonid, NC_FLOAT, dim1);
365	break;
366	}
367
368	bounds_lonid = StdString("bounds_lon").append(appendDomid);
369	bounds_latid = StdString("bounds_lat").append(appendDomid);
370
371	this->writeAxisAttributes
372	(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid);
373	this->writeAxisAttributes
374	(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid);
375
376	if (domain->hasBounds)
377	{
378	SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid);
379	SuperClassWriter::addAttribute("bounds", bounds_latid, &latid);
380
381	dim0.clear();
382	dim0.push_back(dimYid);
383	dim0.push_back(dimXid);
384	dim0.push_back(dimVertId);
385	SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0);
386	SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0);
387	}
388	}
389
390	if (domain->hasArea)
391	{
392	dim0.clear();
393	dim0.push_back(dimYid); dim0.push_back(dimXid);
394	SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0);
395	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
396	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
397	dim0.clear();
398	}
399
400	SuperClassWriter::definition_end();
401
402	switch (domain->type)
403	{
404	case CDomain::type_attr::curvilinear :
405	{
406	std::vector<StdSize> start(2) ;
407	std::vector<StdSize> count(2) ;
408	if (domain->isEmpty())
409	{
410	start[0]=0 ; start[1]=0 ;
411	count[0]=0 ; count[1]=0 ;
412	}
413	else
414	{
415	start[1]=domain->zoom_ibegin-domain->global_zoom_ibegin;
416	start[0]=domain->zoom_jbegin-domain->global_zoom_jbegin;
417	count[1]=domain->zoom_ni ; count[0]=domain->zoom_nj ;
418	}
419
420	if (domain->hasLonLat)
421	{
422	// SuperClassWriter::writeData(domain->latvalue, latid, isCollective, 0,&start,&count);
423	// SuperClassWriter::writeData(domain->lonvalue, lonid, isCollective, 0,&start,&count);
424	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count);
425	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count);
426	}
427	break;
428	}
429	case CDomain::type_attr::rectilinear :
430	{
431	if (domain->hasLonLat)
432	{
433	std::vector<StdSize> start(1) ;
434	std::vector<StdSize> count(1) ;
435	if (domain->isEmpty())
436	{
437	start[0]=0 ;
438	count[0]=0 ;
439	// SuperClassWriter::writeData(domain->latvalue, latid, isCollective, 0,&start,&count);
440	// SuperClassWriter::writeData(domain->lonvalue, lonid, isCollective, 0,&start,&count);
441
442	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count);
443	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count);
444	}
445	else
446	{
447	start[0]=domain->zoom_jbegin-domain->global_zoom_jbegin;
448	count[0]=domain->zoom_nj;
449	// CArray<double,1> lat = domain->latvalue(Range(fromStart,toEnd,domain->zoom_ni));
450	CArray<double,1> lat = writtenLat(Range(fromStart,toEnd,domain->zoom_ni));
451	SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0,&start,&count);
452
453	start[0]=domain->zoom_ibegin-domain->global_zoom_ibegin;
454	count[0]=domain->zoom_ni;
455	// CArray<double,1> lon=domain->lonvalue(Range(0,domain->zoom_ni-1));
456	CArray<double,1> lon = writtenLon(Range(0,domain->zoom_ni-1));
457	SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0,&start,&count);
458	}
459	}
460	break;
461	}
462	}
463
464	if (domain->hasBounds)
465	{
466	std::vector<StdSize> start(3);
467	std::vector<StdSize> count(3);
468	if (domain->isEmpty())
469	{
470	start[2] = start[1] = start[0] = 0;
471	count[2] = count[1] = count[0] = 0;
472	}
473	else
474	{
475	start[2] = 0;
476	start[1] = domain->zoom_ibegin - domain->global_zoom_ibegin;
477	start[0] = domain->zoom_jbegin - domain->global_zoom_jbegin;
478	count[2] = domain->nvertex;
479	count[1] = domain->zoom_ni;
480	count[0] = domain->zoom_nj;
481	}
482
483	// SuperClassWriter::writeData(domain->bounds_lonvalue, bounds_lonid, isCollective, 0, &start, &count);
484	// SuperClassWriter::writeData(domain->bounds_latvalue, bounds_latid, isCollective, 0, &start, &count);
485	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0, &start, &count);
486	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0, &start, &count);
487	}
488
489	if (domain->hasArea)
490	{
491	std::vector<StdSize> start(2);
492	std::vector<StdSize> count(2);
493
494	if (domain->isEmpty())
495	{
496	start[0] = 0; start[1] = 0;
497	count[0] = 0; count[1] = 0;
498	}
499	else
500	{
501	start[1] = domain->zoom_ibegin - domain->global_zoom_ibegin;
502	start[0] = domain->zoom_jbegin - domain->global_zoom_jbegin;
503	count[1] = domain->zoom_ni;
504	count[0] = domain->zoom_nj;
505	}
506
507	// SuperClassWriter::writeData(domain->areavalue, areaId, isCollective, 0, &start, &count);
508	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0, &start, &count);
509	}
510
511	SuperClassWriter::definition_start();
512	break;
513	}
514	default :
515	ERROR("CNc4DataOutput::writeDomain(domain)",
516	<< "[ type = " << SuperClass::type << "]"
517	<< " not implemented yet !");
518	}
519	}
520	catch (CNetCdfException& e)
521	{
522	StdString msg("On writing the domain : ");
523	msg.append(domid); msg.append("\n");
524	msg.append("In the context : ");
525	msg.append(context->getId()); msg.append("\n");
526	msg.append(e.what());
527	ERROR("CNc4DataOutput::writeDomain_(CDomain* domain)", << msg);
528	}
529
530	domain->addRelFile(this->filename);
531	}
532
533	//--------------------------------------------------------------
534
535	void CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain)
536	{
537	CContext* context = CContext::getCurrent() ;
538	CContextServer* server=context->server ;
539
540	if (domain->IsWritten(this->filename)) return;
541	domain->checkAttributes();
542	if (domain->isEmpty())
543	if (SuperClass::type==MULTI_FILE) return ;
544
545	std::vector<StdString> dim0;
546	StdString domid = domain->getDomainOutputName();
547	StdString domainName = domain->name;
548	domain->assignMesh(domainName, domain->nvertex);
549	domain->mesh->createMeshEpsilon(server->intraComm, domain->lonvalue, domain->latvalue, domain->bounds_lonvalue, domain->bounds_latvalue);
550
551	StdString node_x = domainName + "_node_x";
552	StdString node_y = domainName + "_node_y";
553
554	StdString edge_x = domainName + "_edge_x";
555	StdString edge_y = domainName + "_edge_y";
556	StdString edge_nodes = domainName + "_edge_nodes";
557
558	StdString face_x = domainName + "_face_x";
559	StdString face_y = domainName + "_face_y";
560	StdString face_nodes = domainName + "_face_nodes";
561	StdString face_edges = domainName + "_face_edges";
562	StdString edge_faces = domainName + "_edge_face_links";
563	StdString face_faces = domainName + "_face_links";
564
565	StdString dimNode = "n" + domainName + "_node";
566	StdString dimEdge = "n" + domainName + "_edge";
567	StdString dimFace = "n" + domainName + "_face";
568	StdString dimVertex = "n" + domainName + "_vertex";
569	StdString dimTwo = "Two";
570
571	const std::vector<int>& local_size_write = domain->getLocalWriteSize();
572	const std::vector<int>& global_size_write = domain->getGlobalWriteSize();
573	const std::vector<int>& start_write = domain->getStartWriteIndex();
574	const std::vector<int>& count_write = domain->getCountWriteIndex();
575
576	if (!SuperClassWriter::dimExist(dimTwo)) SuperClassWriter::addDimension(dimTwo, 2);
577	if (!isWrittenDomain(domid))
578	{
579	dim0.clear();
580	SuperClassWriter::addVariable(domainName, NC_INT, dim0);
581	SuperClassWriter::addAttribute("cf_role", StdString("mesh_topology"), &domainName);
582	SuperClassWriter::addAttribute("long_name", StdString("Topology data of 2D unstructured mesh"), &domainName);
583	SuperClassWriter::addAttribute("topology_dimension", 2, &domainName);
584	SuperClassWriter::addAttribute("node_coordinates", node_x + " " + node_y, &domainName);
585	}
586
587	try
588	{
589	switch (SuperClass::type)
590	{
591	case (ONE_FILE) :
592	{
593	// Adding nodes
594	if (domain->nvertex == 1)
595	{
596	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
597	{
598	SuperClassWriter::addDimension(dimNode, domain->ni_glo);
599	dim0.clear();
600	dim0.push_back(dimNode);
601	SuperClassWriter::addVariable(node_x, NC_FLOAT, dim0);
602	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
603	SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x);
604	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
605	SuperClassWriter::addVariable(node_y, NC_FLOAT, dim0);
606	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
607	SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y);
608	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
609	}
610	} // domain->nvertex == 1
611
612	// Adding edges and nodes, if nodes have not been defined previously
613	if (domain->nvertex == 2)
614	{
615	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
616	{
617	SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo);
618	dim0.clear();
619	dim0.push_back(dimNode);
620	SuperClassWriter::addVariable(node_x, NC_FLOAT, dim0);
621	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
622	SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x);
623	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
624	SuperClassWriter::addVariable(node_y, NC_FLOAT, dim0);
625	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
626	SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y);
627	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
628	}
629	SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName);
630	SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName);
631	SuperClassWriter::addDimension(dimEdge, domain->ni_glo);
632	dim0.clear();
633	dim0.push_back(dimEdge);
634	SuperClassWriter::addVariable(edge_x, NC_FLOAT, dim0);
635	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x);
636	SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x);
637	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x);
638	SuperClassWriter::addVariable(edge_y, NC_FLOAT, dim0);
639	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y);
640	SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y);
641	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y);
642	dim0.clear();
643	dim0.push_back(dimEdge);
644	dim0.push_back(dimTwo);
645	SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0);
646	SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes);
647	SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes);
648	SuperClassWriter::addAttribute("start_index", 0, &edge_nodes);
649	} // domain->nvertex == 2
650
651	// Adding faces, edges, and nodes, if edges and nodes have not been defined previously
652	if (domain->nvertex > 2)
653	{
654	// Nodes
655	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
656	{
657	SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo);
658	dim0.clear();
659	dim0.push_back(dimNode);
660	SuperClassWriter::addVariable(node_x, NC_FLOAT, dim0);
661	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
662	SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x);
663	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
664	SuperClassWriter::addVariable(node_y, NC_FLOAT, dim0);
665	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
666	SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y);
667	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
668	}
669	if (!SuperClassWriter::varExist(edge_x) \|\| !SuperClassWriter::varExist(edge_y))
670	{
671	SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName);
672	SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName);
673	SuperClassWriter::addDimension(dimEdge, domain->mesh->nbEdgesGlo);
674	dim0.clear();
675	dim0.push_back(dimEdge);
676	SuperClassWriter::addVariable(edge_x, NC_FLOAT, dim0);
677	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x);
678	SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x);
679	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x);
680	SuperClassWriter::addVariable(edge_y, NC_FLOAT, dim0);
681	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y);
682	SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y);
683	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y);
684	dim0.clear();
685	dim0.push_back(dimEdge);
686	dim0.push_back(dimTwo);
687	SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0);
688	SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes);
689	SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes);
690	SuperClassWriter::addAttribute("start_index", 0, &edge_nodes);
691	}
692	SuperClassWriter::addAttribute("face_coordinates", face_x + " " + face_y, &domainName);
693	SuperClassWriter::addAttribute("face_node_connectivity", face_nodes, &domainName);
694	SuperClassWriter::addDimension(dimFace, domain->ni_glo);
695	SuperClassWriter::addDimension(dimVertex, domain->nvertex);
696	dim0.clear();
697	dim0.push_back(dimFace);
698	SuperClassWriter::addVariable(face_x, NC_FLOAT, dim0);
699	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &face_x);
700	SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh faces."), &face_x);
701	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &face_x);
702	SuperClassWriter::addVariable(face_y, NC_FLOAT, dim0);
703	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &face_y);
704	SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh faces."), &face_y);
705	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &face_y);
706	dim0.clear();
707	dim0.push_back(dimFace);
708	dim0.push_back(dimVertex);
709	SuperClassWriter::addVariable(face_nodes, NC_INT, dim0);
710	SuperClassWriter::addAttribute("cf_role", StdString("face_node_connectivity"), &face_nodes);
711	SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its corner nodes."), &face_nodes);
712	SuperClassWriter::addAttribute("start_index", 0, &face_nodes);
713	dim0.clear();
714	dim0.push_back(dimFace);
715	dim0.push_back(dimVertex);
716	SuperClassWriter::addVariable(face_edges, NC_INT, dim0);
717	SuperClassWriter::addAttribute("cf_role", StdString("face_edge_connectivity"), &face_edges);
718	SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its edges."), &face_edges);
719	SuperClassWriter::addAttribute("start_index", 0, &face_edges);
720	SuperClassWriter::addAttribute("_FillValue", 999999, &face_edges);
721	dim0.clear();
722	dim0.push_back(dimEdge);
723	dim0.push_back(dimTwo);
724	SuperClassWriter::addVariable(edge_faces, NC_INT, dim0);
725	SuperClassWriter::addAttribute("cf_role", StdString("edge_face connectivity"), &edge_faces);
726	SuperClassWriter::addAttribute("long_name", StdString("neighbor faces for edges"), &edge_faces);
727	SuperClassWriter::addAttribute("start_index", 0, &edge_faces);
728	SuperClassWriter::addAttribute("_FillValue", -999, &edge_faces);
729	SuperClassWriter::addAttribute("comment", StdString("missing neighbor faces are indicated using _FillValue"), &edge_faces);
730	dim0.clear();
731	dim0.push_back(dimFace);
732	dim0.push_back(dimVertex);
733	SuperClassWriter::addVariable(face_faces, NC_INT, dim0);
734	SuperClassWriter::addAttribute("cf_role", StdString("face_face connectivity"), &face_faces);
735	SuperClassWriter::addAttribute("long_name", StdString("Indicates which other faces neighbor each face"), &face_faces);
736	SuperClassWriter::addAttribute("start_index", 0, &face_faces);
737	SuperClassWriter::addAttribute("_FillValue", 999999, &face_faces);
738	SuperClassWriter::addAttribute("flag_values", -1, &face_faces);
739	SuperClassWriter::addAttribute("flag_meanings", StdString("out_of_mesh"), &face_faces);
740	} // domain->nvertex > 2
741
742	SuperClassWriter::definition_end();
743
744	std::vector<StdSize> startEdges(1) ;
745	std::vector<StdSize> countEdges(1) ;
746	std::vector<StdSize> startNodes(1) ;
747	std::vector<StdSize> countNodes(1) ;
748	std::vector<StdSize> startFaces(1) ;
749	std::vector<StdSize> countFaces(1) ;
750	std::vector<StdSize> startEdgeNodes(2) ;
751	std::vector<StdSize> countEdgeNodes(2) ;
752	std::vector<StdSize> startEdgeFaces(2) ;
753	std::vector<StdSize> countEdgeFaces(2) ;
754	std::vector<StdSize> startFaceConctv(2) ;
755	std::vector<StdSize> countFaceConctv(2) ;
756
757	if (!isWrittenDomain(domid))
758	{
759	if (domain->nvertex == 1)
760	{
761	if (domain->isEmpty())
762	{
763	startNodes[0]=0 ;
764	countNodes[0]=0 ;
765	}
766	else
767	{
768	startNodes[0] = start_write[0]; //domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
769	countNodes[0] = count_write[0]; //domain->zoom_ni_srv ;
770	}
771
772	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes);
773	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes);
774	}
775	else if (domain->nvertex == 2)
776	{
777	if (domain->isEmpty())
778	{
779	startEdges[0]=0 ;
780	countEdges[0]=0 ;
781	startNodes[0]=0 ;
782	countNodes[0]=0 ;
783	startEdgeNodes[0]=0;
784	startEdgeNodes[1]=0;
785	countEdgeNodes[0]=0;
786	countEdgeNodes[1]=0;
787
788	}
789	else
790	{
791	startEdges[0] = start_write[0]; //domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
792	countEdges[0] = count_write[0];
793	startNodes[0] = domain->mesh->node_start;
794	countNodes[0] = domain->mesh->node_count;
795	startEdgeNodes[0] = start_write[0]; //domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
796	startEdgeNodes[1] = 0;
797	countEdgeNodes[0] = count_write[0]; //domain->zoom_ni_srv;
798	countEdgeNodes[1]= 2;
799	}
800	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes);
801	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes);
802	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
803	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
804	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
805	}
806	else
807	{
808	if (domain->isEmpty())
809	{
810	startFaces[0] = 0 ;
811	countFaces[0] = 0 ;
812	startNodes[0] = 0;
813	countNodes[0] = 0;
814	startEdges[0] = 0;
815	countEdges[0] = 0;
816	startEdgeFaces[0] = 0;
817	startEdgeFaces[1] = 0;
818	countEdgeFaces[0] = 0;
819	countEdgeFaces[1] = 0;
820	startFaceConctv[0] = 0;
821	startFaceConctv[1] = 0;
822	countFaceConctv[0] = 0;
823	countFaceConctv[1] = 0;
824	}
825	else
826	{
827	startFaces[0] = start_write[0]; //domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
828	countFaces[0] = count_write[0]; //domain->zoom_ni_srv ;
829	startNodes[0] = domain->mesh->node_start;
830	countNodes[0] = domain->mesh->node_count;
831	startEdges[0] = domain->mesh->edge_start;
832	countEdges[0] = domain->mesh->edge_count;
833	startEdgeNodes[0] = domain->mesh->edge_start;
834	startEdgeNodes[1] = 0;
835	countEdgeNodes[0] = domain->mesh->edge_count;
836	countEdgeNodes[1]= 2;
837	startEdgeFaces[0] = domain->mesh->edge_start;
838	startEdgeFaces[1]= 0;
839	countEdgeFaces[0] = domain->mesh->edge_count;
840	countEdgeFaces[1]= 2;
841	startFaceConctv[0] = start_write[0]; //domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
842	startFaceConctv[1] = 0; //0;
843	countFaceConctv[0] = count_write[0]; //domain->zoom_ni_srv;
844	countFaceConctv[1] = domain->nvertex;
845	}
846	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes);
847	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes);
848	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
849	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
850	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
851	SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0, &startFaces, &countFaces);
852	SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0, &startFaces, &countFaces);
853	SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes, isCollective, 0, &startFaceConctv, &countFaceConctv);
854	SuperClassWriter::writeData(domain->mesh->face_edges, face_edges, isCollective, 0, &startFaceConctv, &countFaceConctv);
855	SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces, isCollective, 0, &startEdgeFaces, &countEdgeFaces);
856	SuperClassWriter::writeData(domain->mesh->face_faces, face_faces, isCollective, 0, &startFaceConctv, &countFaceConctv);
857	}
858	setWrittenDomain(domid);
859	} // !isWrittenDomain
860	else
861	{
862	if (domain->nvertex == 2)
863	{
864	startEdges[0] = start_write[0]; //domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
865	countEdges[0] = count_write[0]; //domain->zoom_ni_srv ;
866	startEdgeNodes[0] = start_write[0]; //domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
867	startEdgeNodes[1] = 0; //0;
868	countEdgeNodes[0] = count_write[0]; //domain->zoom_ni_srv;
869	countEdgeNodes[1]= 2;
870	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
871	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
872	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
873	}
874	if (domain->nvertex > 2)
875	{
876
877	if (!domain->mesh->edgesAreWritten)
878	{
879	startEdges[0] = domain->mesh->edge_start;
880	countEdges[0] = domain->mesh->edge_count;
881	startEdgeNodes[0] = domain->mesh->edge_start;
882	startEdgeNodes[1] = 0;
883	countEdgeNodes[0] = domain->mesh->edge_count;
884	countEdgeNodes[1]= 2;
885	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
886	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
887	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
888	}
889	startFaces[0] = start_write[0]; //domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
890	countFaces[0] = count_write[0]; //domain->zoom_ni_srv;
891	startEdgeFaces[0] = domain->mesh->edge_start;
892	startEdgeFaces[1]= 0;
893	countEdgeFaces[0] = domain->mesh->edge_count;
894	countEdgeFaces[1]= 2;
895	startFaceConctv[0] = start_write[0]; //domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
896	startFaceConctv[1] = 0; //0;
897	countFaceConctv[0] = count_write[0]; //domain->zoom_ni_srv;
898	countFaceConctv[1]= domain->nvertex;
899	SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0, &startFaces, &countFaces);
900	SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0, &startFaces, &countFaces);
901	SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes, isCollective, 0, &startFaceConctv, &countFaceConctv);
902	SuperClassWriter::writeData(domain->mesh->face_edges, face_edges, isCollective, 0, &startFaceConctv, &countFaceConctv);
903	SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces, isCollective, 0, &startEdgeFaces, &countEdgeFaces);
904	SuperClassWriter::writeData(domain->mesh->face_faces, face_faces, isCollective, 0, &startFaceConctv, &countFaceConctv);
905	}
906	}// isWrittenDomain
907
908	SuperClassWriter::definition_start();
909
910	break;
911	} // ONE_FILE
912
913	case (MULTI_FILE) :
914	{
915	break;
916	}
917
918	default :
919	ERROR("CNc4DataOutput::writeDomain(domain)",
920	<< "[ type = " << SuperClass::type << "]"
921	<< " not implemented yet !");
922	} // switch
923	} // try
924
925	catch (CNetCdfException& e)
926	{
927	StdString msg("On writing the domain : ");
928	msg.append(domid); msg.append("\n");
929	msg.append("In the context : ");
930	msg.append(context->getId()); msg.append("\n");
931	msg.append(e.what());
932	ERROR("CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain)", << msg);
933	}
934
935	domain->addRelFile(this->filename);
936	}
937
938	//--------------------------------------------------------------
939
940	void CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)
941	{
942	CContext* context = CContext::getCurrent() ;
943	CContextServer* server=context->server ;
944
945	if (domain->IsWritten(this->filename)) return;
946	domain->checkAttributes();
947
948	if (domain->isEmpty())
949	if (SuperClass::type==MULTI_FILE) return ;
950
951	std::vector<StdString> dim0, dim1;
952	StdString domid = domain->getDomainOutputName();
953	if (isWrittenDomain(domid)) return ;
954	else setWrittenDomain(domid);
955
956	StdString appendDomid = (singleDomain) ? "" : "_"+domid ;
957
958	StdString dimXid = StdString("cell").append(appendDomid);
959	StdString dimVertId = StdString("nvertex").append(appendDomid);
960
961	string lonid,latid,bounds_lonid,bounds_latid ;
962	string areaId = "area" + appendDomid;
963
964	const std::vector<int>& local_size_write = domain->getLocalWriteSize();
965	const std::vector<int>& global_size_write = domain->getGlobalWriteSize();
966	const std::vector<int>& start_write = domain->getStartWriteIndex();
967	const std::vector<int>& count_write = domain->getCountWriteIndex();
968	int nvertex = (domain->nvertex.isEmpty()) ? 0 : domain->nvertex;
969
970	try
971	{
972	switch (SuperClass::type)
973	{
974	case (MULTI_FILE) :
975	{
976	dim0.push_back(dimXid);
977	SuperClassWriter::addDimension(dimXid, local_size_write[0]);
978
979	lonid = StdString("lon").append(appendDomid);
980	latid = StdString("lat").append(appendDomid);
981	bounds_lonid = StdString("bounds_lon").append(appendDomid);
982	bounds_latid = StdString("bounds_lat").append(appendDomid);
983	if (domain->hasLonLat)
984	{
985	SuperClassWriter::addVariable(latid, NC_FLOAT, dim0);
986	SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0);
987	this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid);
988	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid);
989	this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid);
990	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid);
991	if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex);
992	}
993	dim0.clear();
994	if (domain->hasBounds)
995	{
996	dim0.push_back(dimXid);
997	dim0.push_back(dimVertId);
998	SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0);
999	SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0);
1000	}
1001
1002	dim0.clear();
1003	dim0.push_back(dimXid);
1004	if (domain->hasArea)
1005	{
1006	SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0);
1007	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
1008	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
1009	}
1010
1011	SuperClassWriter::definition_end();
1012
1013	if (domain->hasLonLat)
1014	{
1015	SuperClassWriter::writeData(domain->latvalue, latid, isCollective, 0);
1016	SuperClassWriter::writeData(domain->lonvalue, lonid, isCollective, 0);
1017	if (domain->hasBounds)
1018	{
1019	SuperClassWriter::writeData(domain->bounds_lonvalue, bounds_lonid, isCollective, 0);
1020	SuperClassWriter::writeData(domain->bounds_latvalue, bounds_latid, isCollective, 0);
1021	}
1022	}
1023
1024	if (domain->hasArea)
1025	SuperClassWriter::writeData(domain->areavalue, areaId, isCollective, 0);
1026
1027	SuperClassWriter::definition_start();
1028	break ;
1029	}
1030
1031	case (ONE_FILE) :
1032	{
1033	lonid = StdString("lon").append(appendDomid);
1034	latid = StdString("lat").append(appendDomid);
1035	bounds_lonid = StdString("bounds_lon").append(appendDomid);
1036	bounds_latid = StdString("bounds_lat").append(appendDomid);
1037	dim0.push_back(dimXid);
1038	SuperClassWriter::addDimension(dimXid, global_size_write[0]);
1039	if (domain->hasLonLat)
1040	{
1041	SuperClassWriter::addVariable(latid, NC_FLOAT, dim0);
1042	SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0);
1043
1044	this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid);
1045	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid);
1046	this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid);
1047	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid);
1048	if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, nvertex);
1049	}
1050	dim0.clear();
1051
1052	if (domain->hasBounds)
1053	{
1054	dim0.push_back(dimXid);
1055	dim0.push_back(dimVertId);
1056	SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0);
1057	SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0);
1058	}
1059
1060	if (domain->hasArea)
1061	{
1062	dim0.clear();
1063	dim0.push_back(dimXid);
1064	SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0);
1065	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
1066	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
1067	}
1068
1069	SuperClassWriter::definition_end();
1070
1071	std::vector<StdSize> start(1), startBounds(2) ;
1072	std::vector<StdSize> count(1), countBounds(2) ;
1073	if (domain->isEmpty())
1074	{
1075	start[0]=0 ;
1076	count[0]=0 ;
1077	startBounds[1]=0 ;
1078	countBounds[1]=nvertex ;
1079	startBounds[0]=0 ;
1080	countBounds[0]=0 ;
1081	}
1082	else
1083	{
1084	start[0]=start_write[0];
1085	count[0]=count_write[0];
1086	startBounds[0]=start_write[0];
1087	startBounds[1]=0 ;
1088	countBounds[0]=count_write[0];
1089	countBounds[1]=nvertex ;
1090	}
1091
1092	if (domain->hasLonLat)
1093	{
1094	SuperClassWriter::writeData(domain->latvalue, latid, isCollective, 0,&start,&count);
1095	SuperClassWriter::writeData(domain->lonvalue, lonid, isCollective, 0,&start,&count);
1096	if (domain->hasBounds)
1097	{
1098	SuperClassWriter::writeData(domain->bounds_lonvalue, bounds_lonid, isCollective, 0,&startBounds,&countBounds);
1099	SuperClassWriter::writeData(domain->bounds_latvalue, bounds_latid, isCollective, 0,&startBounds,&countBounds);
1100	}
1101	}
1102
1103	if (domain->hasArea)
1104	SuperClassWriter::writeData(domain->areavalue, areaId, isCollective, 0, &start, &count);
1105
1106	SuperClassWriter::definition_start();
1107
1108	break;
1109	}
1110	default :
1111	ERROR("CNc4DataOutput::writeDomain(domain)",
1112	<< "[ type = " << SuperClass::type << "]"
1113	<< " not implemented yet !");
1114	}
1115	}
1116	catch (CNetCdfException& e)
1117	{
1118	StdString msg("On writing the domain : ");
1119	msg.append(domid); msg.append("\n");
1120	msg.append("In the context : ");
1121	msg.append(context->getId()); msg.append("\n");
1122	msg.append(e.what());
1123	ERROR("CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)", << msg);
1124	}
1125	domain->addRelFile(this->filename);
1126	}
1127	//--------------------------------------------------------------
1128
1129	void CNc4DataOutput::writeAxis_(CAxis* axis)
1130	{
1131	CContext* context = CContext::getCurrent();
1132
1133	if (axis->IsWritten(this->filename)) return;
1134	axis->checkAttributes();
1135
1136	axis->computeWrittenIndex();
1137
1138	int zoom_size = (MULTI_FILE == SuperClass::type) ? axis->zoom_n
1139	: axis->global_zoom_n;
1140	int zoom_begin = (MULTI_FILE == SuperClass::type) ? axis->zoom_begin
1141	: axis->global_zoom_begin;
1142
1143	if ((0 == axis->zoom_n) && (MULTI_FILE == SuperClass::type)) return;
1144
1145	std::vector<StdString> dims;
1146	StdString axisid = axis->getAxisOutputName();
1147	if (isWrittenAxis(axisid)) return ;
1148	else setWrittenAxis(axisid);
1149
1150	try
1151	{
1152	SuperClassWriter::addDimension(axisid, zoom_size);
1153	if (axis->hasValue)
1154	{
1155	dims.push_back(axisid);
1156	SuperClassWriter::addVariable(axisid, NC_FLOAT, dims);
1157
1158	if (!axis->name.isEmpty())
1159	SuperClassWriter::addAttribute("name", axis->name.getValue(), &axisid);
1160
1161	if (!axis->standard_name.isEmpty())
1162	SuperClassWriter::addAttribute("standard_name", axis->standard_name.getValue(), &axisid);
1163
1164	if (!axis->long_name.isEmpty())
1165	SuperClassWriter::addAttribute("long_name", axis->long_name.getValue(), &axisid);
1166
1167	if (!axis->unit.isEmpty())
1168	SuperClassWriter::addAttribute("units", axis->unit.getValue(), &axisid);
1169
1170	if (!axis->positive.isEmpty())
1171	{
1172	SuperClassWriter::addAttribute("axis", string("Z"), &axisid);
1173	SuperClassWriter::addAttribute("positive",
1174	(axis->positive == CAxis::positive_attr::up) ? string("up") : string("down"),
1175	&axisid);
1176	}
1177
1178	StdString axisBoundsId = axisid + "_bounds";
1179	if (!axis->bounds.isEmpty())
1180	{
1181	dims.push_back("axis_nbounds");
1182	SuperClassWriter::addVariable(axisBoundsId, NC_FLOAT, dims);
1183	SuperClassWriter::addAttribute("bounds", axisBoundsId, &axisid);
1184	}
1185
1186	SuperClassWriter::definition_end();
1187
1188	CArray<size_t, 1>& indexToWrite = axis->localIndexToWriteOnServer;
1189	int nbWritten = indexToWrite.numElements();
1190	CArray<double,1> axis_value(indexToWrite.numElements());
1191	for (int i = 0; i < nbWritten; i++) axis_value(i) = axis->value(indexToWrite(i));
1192	CArray<double,2> axis_bounds;
1193
1194	switch (SuperClass::type)
1195	{
1196	case MULTI_FILE:
1197	{
1198	// CArray<double,1> axis_value(axis->zoom_n);
1199	// for (int i = 0; i < axis->zoom_n; i++) axis_value(i) = axis->value(i);
1200	SuperClassWriter::writeData(axis_value, axisid, isCollective, 0);
1201
1202	if (!axis->bounds.isEmpty())
1203	SuperClassWriter::writeData(axis->bounds, axisBoundsId, isCollective, 0);
1204
1205	SuperClassWriter::definition_start();
1206
1207	break;
1208	}
1209	case ONE_FILE:
1210	{
1211	// CArray<double,1> axis_value(axis->zoom_n);
1212	// axis_value = axis->value;
1213	std::vector<StdSize> start(1), startBounds(2) ;
1214	std::vector<StdSize> count(1), countBounds(2) ;
1215	start[0] = startBounds[0] = zoom_begin - axis->global_zoom_begin;
1216	count[0] = countBounds[0] = zoom_size;
1217	startBounds[1] = 0;
1218	countBounds[1] = 2;
1219	SuperClassWriter::writeData(axis_value, axisid, isCollective, 0, &start, &count);
1220
1221	if (!axis->bounds.isEmpty())
1222	{
1223	axis_bounds.resize(2, indexToWrite.numElements());
1224	for (int i = 0; i < nbWritten; ++i)
1225	{
1226	axis_bounds(0, i) = axis->bounds(0, int(indexToWrite(i)));
1227	axis_bounds(1, i) = axis->bounds(1, int(indexToWrite(i)));
1228	}
1229	SuperClassWriter::writeData(axis->bounds, axisBoundsId, isCollective, 0, &startBounds, &countBounds);
1230	}
1231
1232	SuperClassWriter::definition_start();
1233
1234	break;
1235	}
1236	default :
1237	ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)",
1238	<< "[ type = " << SuperClass::type << "]"
1239	<< " not implemented yet !");
1240	}
1241	}
1242	}
1243	catch (CNetCdfException& e)
1244	{
1245	StdString msg("On writing the axis : ");
1246	msg.append(axisid); msg.append("\n");
1247	msg.append("In the context : ");
1248	CContext* context = CContext::getCurrent() ;
1249	msg.append(context->getId()); msg.append("\n");
1250	msg.append(e.what());
1251	ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)", << msg);
1252	}
1253
1254	axis->addRelFile(this->filename);
1255	}
1256
1257	void CNc4DataOutput::writeScalar_(CScalar* scalar)
1258	{
1259	if (scalar->IsWritten(this->filename)) return;
1260	scalar->checkAttributes();
1261	int scalarSize = 1;
1262
1263	StdString scalaId = scalar->getScalarOutputName();
1264	if (isWrittenAxis(scalaId)) return ;
1265	else setWrittenAxis(scalaId);
1266
1267	try
1268	{
1269	if (!scalar->value.isEmpty())
1270	{
1271	// dims.push_back(scalaId);
1272	std::vector<StdString> dims;
1273	SuperClassWriter::addVariable(scalaId, NC_FLOAT, dims);
1274
1275	if (!scalar->name.isEmpty())
1276	SuperClassWriter::addAttribute("name", scalar->name.getValue(), &scalaId);
1277
1278	if (!scalar->standard_name.isEmpty())
1279	SuperClassWriter::addAttribute("standard_name", scalar->standard_name.getValue(), &scalaId);
1280
1281	if (!scalar->long_name.isEmpty())
1282	SuperClassWriter::addAttribute("long_name", scalar->long_name.getValue(), &scalaId);
1283
1284	if (!scalar->unit.isEmpty())
1285	SuperClassWriter::addAttribute("units", scalar->unit.getValue(), &scalaId);
1286
1287	SuperClassWriter::definition_end();
1288
1289	switch (SuperClass::type)
1290	{
1291	case MULTI_FILE:
1292	{
1293	CArray<double,1> scalarValue(scalarSize);
1294	scalarValue(0) = scalar->value;
1295	SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0);
1296	SuperClassWriter::definition_start();
1297
1298	break;
1299	}
1300	case ONE_FILE:
1301	{
1302	CArray<double,1> scalarValue(scalarSize);
1303	scalarValue(0) = scalar->value;
1304
1305	std::vector<StdSize> start(1);
1306	std::vector<StdSize> count(1);
1307	start[0] = 0;
1308	count[0] = 1;
1309	SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0, &start, &count);
1310	SuperClassWriter::definition_start();
1311
1312	break;
1313	}
1314	default :
1315	ERROR("CNc4DataOutput::writeAxis_(CAxis* scalar)",
1316	<< "[ type = " << SuperClass::type << "]"
1317	<< " not implemented yet !");
1318	}
1319	}
1320	}
1321	catch (CNetCdfException& e)
1322	{
1323	StdString msg("On writing the scalar : ");
1324	msg.append(scalaId); msg.append("\n");
1325	msg.append("In the context : ");
1326	CContext* context = CContext::getCurrent() ;
1327	msg.append(context->getId()); msg.append("\n");
1328	msg.append(e.what());
1329	ERROR("CNc4DataOutput::writeScalar_(CScalar* scalar)", << msg);
1330	}
1331	scalar->addRelFile(this->filename);
1332	}
1333
1334	//--------------------------------------------------------------
1335
1336	void CNc4DataOutput::writeGridCompressed_(CGrid* grid)
1337	{
1338	if (grid->isScalarGrid() \|\| grid->isWrittenCompressed(this->filename)) return;
1339
1340	try
1341	{
1342	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
1343	std::vector<StdString> domainList = grid->getDomainList();
1344	std::vector<StdString> axisList = grid->getAxisList();
1345	std::vector<StdString> scalarList = grid->getScalarList();
1346	int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0;
1347
1348	std::vector<StdString> dims;
1349
1350	if (grid->isCompressible())
1351	{
1352	StdString varId = grid->getId() + "_points";
1353
1354	int nbIndexes = (SuperClass::type == MULTI_FILE) ? grid->getNumberWrittenIndexes() : grid->getTotalNumberWrittenIndexes();
1355	SuperClassWriter::addDimension(varId, nbIndexes);
1356
1357	dims.push_back(varId);
1358	SuperClassWriter::addVariable(varId, NC_INT, dims);
1359
1360	StdOStringStream compress;
1361	for (int i = numElement - 1; i >= 0; --i)
1362	{
1363	if (2 == axisDomainOrder(i))
1364	{
1365	CDomain* domain = CDomain::get(domainList[domainList.size() - idxDomain - 1]);
1366	StdString domId = domain->getDomainOutputName();
1367	StdString appendDomId = singleDomain ? "" : "_" + domId;
1368
1369	switch (domain->type)
1370	{
1371	case CDomain::type_attr::curvilinear:
1372	compress << "y" << appendDomId << " x" << appendDomId;
1373	break;
1374	case CDomain::type_attr::rectilinear:
1375	compress << "lat" << appendDomId << " lon" << appendDomId;
1376	break;
1377	case CDomain::type_attr::unstructured:
1378	compress << "cell" << appendDomId;
1379	break;
1380	}
1381	++idxDomain;
1382	}
1383	else if (1 == axisDomainOrder(i))
1384	{
1385	CAxis* axis = CAxis::get(axisList[axisList.size() - idxAxis - 1]);
1386	compress << axis->getAxisOutputName();
1387	++idxAxis;
1388	}
1389	else
1390	{
1391	CScalar* scalar = CScalar::get(scalarList[scalarList.size() - idxScalar - 1]);
1392	compress << scalar->getScalarOutputName();
1393	++idxScalar;
1394	}
1395
1396	if (i != 0) compress << ' ';
1397	}
1398	SuperClassWriter::addAttribute("compress", compress.str(), &varId);
1399
1400	grid->computeCompressedIndex();
1401
1402	CArray<int, 1> indexes(grid->getNumberWrittenIndexes());
1403	std::map<int, CArray<size_t, 1> >::const_iterator it;
1404	for (it = grid->outIndexFromClient.begin(); it != grid->outIndexFromClient.end(); ++it)
1405	{
1406	const CArray<size_t, 1> compressedIndexes = grid->compressedOutIndexFromClient[it->first];
1407	for (int i = 0; i < it->second.numElements(); i++)
1408	indexes(compressedIndexes(i)) = it->second(i);
1409	}
1410
1411	switch (SuperClass::type)
1412	{
1413	case (MULTI_FILE):
1414	{
1415	SuperClassWriter::writeData(indexes, varId, isCollective, 0);
1416	break;
1417	}
1418	case (ONE_FILE):
1419	{
1420	if (grid->doGridHaveDataDistributed())
1421	grid->getDistributionServer()->computeGlobalIndex(indexes);
1422
1423	std::vector<StdSize> start, count;
1424	start.push_back(grid->getOffsetWrittenIndexes());
1425	count.push_back(grid->getNumberWrittenIndexes());
1426
1427	SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count);
1428	break;
1429	}
1430	}
1431	}
1432	else
1433	{
1434	for (int i = 0; i < numElement; ++i)
1435	{
1436	StdString varId, compress;
1437	CArray<int, 1> indexes;
1438	bool isDistributed;
1439	StdSize nbIndexes, totalNbIndexes, offset;
1440	int firstGlobalIndex;
1441
1442	if (2 == axisDomainOrder(i))
1443	{
1444	CDomain* domain = CDomain::get(domainList[idxDomain]);
1445	StdString domId = domain->getDomainOutputName();
1446
1447	if (!domain->isCompressible()
1448	\|\| domain->type == CDomain::type_attr::unstructured
1449	\|\| domain->isWrittenCompressed(this->filename)
1450	\|\| isWrittenCompressedDomain(domId))
1451	continue;
1452
1453	StdString appendDomId = singleDomain ? "" : "_" + domId;
1454
1455	varId = domId + "_points";
1456	switch (domain->type)
1457	{
1458	case CDomain::type_attr::curvilinear:
1459	compress = "y" + appendDomId + " x" + appendDomId;
1460	break;
1461	case CDomain::type_attr::rectilinear:
1462	compress = "lat" + appendDomId + " lon" + appendDomId;
1463	break;
1464	}
1465
1466	const std::vector<int>& indexesToWrite = domain->getIndexesToWrite();
1467	indexes.resize(indexesToWrite.size());
1468	for (int n = 0; n < indexes.numElements(); ++n)
1469	indexes(n) = indexesToWrite[n];
1470
1471	isDistributed = domain->isDistributed();
1472	nbIndexes = domain->getNumberWrittenIndexes();
1473	totalNbIndexes = domain->getTotalNumberWrittenIndexes();
1474	offset = domain->getOffsetWrittenIndexes();
1475	firstGlobalIndex = domain->ibegin + domain->jbegin * domain->ni_glo;
1476
1477	domain->addRelFileCompressed(this->filename);
1478	setWrittenCompressedDomain(domId);
1479	++idxDomain;
1480	}
1481	else if (1 == axisDomainOrder(i))
1482	{
1483	CAxis* axis = CAxis::get(axisList[idxAxis]);
1484	StdString axisId = axis->getAxisOutputName();
1485
1486	if (!axis->isCompressible()
1487	\|\| axis->isWrittenCompressed(this->filename)
1488	\|\| isWrittenCompressedAxis(axisId))
1489	continue;
1490
1491	varId = axisId + "_points";
1492	compress = axisId;
1493
1494	const std::vector<int>& indexesToWrite = axis->getIndexesToWrite();
1495	indexes.resize(indexesToWrite.size());
1496	for (int n = 0; n < indexes.numElements(); ++n)
1497	indexes(n) = indexesToWrite[n];
1498
1499	isDistributed = axis->isDistributed();
1500	nbIndexes = axis->getNumberWrittenIndexes();
1501	totalNbIndexes = axis->getTotalNumberWrittenIndexes();
1502	offset = axis->getOffsetWrittenIndexes();
1503	firstGlobalIndex = axis->begin;
1504
1505	axis->addRelFileCompressed(this->filename);
1506	setWrittenCompressedAxis(axisId);
1507	++idxAxis;
1508	}
1509	else
1510	{
1511	}
1512
1513	if (!varId.empty())
1514	{
1515	SuperClassWriter::addDimension(varId, (SuperClass::type == MULTI_FILE) ? nbIndexes : totalNbIndexes);
1516
1517	dims.clear();
1518	dims.push_back(varId);
1519	SuperClassWriter::addVariable(varId, NC_INT, dims);
1520
1521	SuperClassWriter::addAttribute("compress", compress, &varId);
1522
1523	switch (SuperClass::type)
1524	{
1525	case (MULTI_FILE):
1526	{
1527	indexes -= firstGlobalIndex;
1528	SuperClassWriter::writeData(indexes, varId, isCollective, 0);
1529	break;
1530	}
1531	case (ONE_FILE):
1532	{
1533	std::vector<StdSize> start, count;
1534	start.push_back(offset);
1535	count.push_back(nbIndexes);
1536
1537	SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count);
1538	break;
1539	}
1540	}
1541	}
1542	}
1543
1544	if (!dims.empty())
1545	grid->computeCompressedIndex();
1546	}
1547
1548	grid->addRelFileCompressed(this->filename);
1549	}
1550	catch (CNetCdfException& e)
1551	{
1552	StdString msg("On writing compressed grid : ");
1553	msg.append(grid->getId()); msg.append("\n");
1554	msg.append("In the context : ");
1555	CContext* context = CContext::getCurrent();
1556	msg.append(context->getId()); msg.append("\n");
1557	msg.append(e.what());
1558	ERROR("CNc4DataOutput::writeGridCompressed_(CGrid* grid)", << msg);
1559	}
1560	}
1561
1562	//--------------------------------------------------------------
1563
1564	void CNc4DataOutput::writeTimeDimension_(void)
1565	{
1566	try
1567	{
1568	SuperClassWriter::addDimension(getTimeCounterName());
1569	}
1570	catch (CNetCdfException& e)
1571	{
1572	StdString msg("On writing time dimension : time_couter\n");
1573	msg.append("In the context : ");
1574	CContext* context = CContext::getCurrent() ;
1575	msg.append(context->getId()); msg.append("\n");
1576	msg.append(e.what());
1577	ERROR("CNc4DataOutput::writeTimeDimension_(void)", << msg);
1578	}
1579	}
1580
1581	//--------------------------------------------------------------
1582
1583	void CNc4DataOutput::writeField_(CField* field)
1584	{
1585	CContext* context = CContext::getCurrent() ;
1586	CContextServer* server=context->server ;
1587
1588	std::vector<StdString> dims, coodinates;
1589	CGrid* grid = field->grid;
1590	if (!grid->doGridHaveDataToWrite())
1591	if (SuperClass::type==MULTI_FILE) return ;
1592
1593	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
1594	int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0;
1595	std::vector<StdString> domainList = grid->getDomainList();
1596	std::vector<StdString> axisList = grid->getAxisList();
1597	std::vector<StdString> scalarList = grid->getScalarList();
1598
1599	StdString timeid = getTimeCounterName();
1600	StdString dimXid,dimYid;
1601	std::deque<StdString> dimIdList, dimCoordList;
1602	bool hasArea = false;
1603	StdString cellMeasures = "area:";
1604	bool compressedOutput = !field->indexed_output.isEmpty() && field->indexed_output;
1605
1606	for (int i = 0; i < numElement; ++i)
1607	{
1608	if (2 == axisDomainOrder(i))
1609	{
1610	CDomain* domain = CDomain::get(domainList[idxDomain]);
1611	StdString domId = domain->getDomainOutputName();
1612	StdString appendDomId = singleDomain ? "" : "_" + domId ;
1613
1614	if (compressedOutput && domain->isCompressible() && domain->type != CDomain::type_attr::unstructured)
1615	{
1616	dimIdList.push_back(domId + "_points");
1617	field->setUseCompressedOutput();
1618	}
1619
1620	switch (domain->type)
1621	{
1622	case CDomain::type_attr::curvilinear:
1623	if (!compressedOutput \|\| !domain->isCompressible())
1624	{
1625	dimXid = StdString("x").append(appendDomId);
1626	dimIdList.push_back(dimXid);
1627	dimYid = StdString("y").append(appendDomId);
1628	dimIdList.push_back(dimYid);
1629	}
1630	dimCoordList.push_back(StdString("nav_lon").append(appendDomId));
1631	dimCoordList.push_back(StdString("nav_lat").append(appendDomId));
1632	break ;
1633	case CDomain::type_attr::rectilinear:
1634	if (!compressedOutput \|\| !domain->isCompressible())
1635	{
1636	dimXid = StdString("lon").append(appendDomId);
1637	dimIdList.push_back(dimXid);
1638	dimYid = StdString("lat").append(appendDomId);
1639	dimIdList.push_back(dimYid);
1640	}
1641	break ;
1642	case CDomain::type_attr::unstructured:
1643	{
1644	if (SuperClassWriter::useCFConvention)
1645	{
1646	dimXid = StdString("cell").append(appendDomId);
1647	dimIdList.push_back(dimXid);
1648	dimCoordList.push_back(StdString("lon").append(appendDomId));
1649	dimCoordList.push_back(StdString("lat").append(appendDomId));
1650	}
1651	else
1652	{
1653	StdString domainName = domain->name;
1654	if (domain->nvertex == 1)
1655	{
1656	dimXid = "n" + domainName + "_node";
1657	dimIdList.push_back(dimXid);
1658	dimCoordList.push_back(StdString(domainName + "_node_x"));
1659	dimCoordList.push_back(StdString(domainName + "_node_y"));
1660	}
1661	else if (domain->nvertex == 2)
1662	{
1663	dimXid = "n" + domainName + "_edge";
1664	dimIdList.push_back(dimXid);
1665	dimCoordList.push_back(StdString(domainName + "_edge_x"));
1666	dimCoordList.push_back(StdString(domainName + "_edge_y"));
1667	}
1668	else
1669	{
1670	dimXid = "n" + domainName + "_face";
1671	dimIdList.push_back(dimXid);
1672	dimCoordList.push_back(StdString(domainName + "_face_x"));
1673	dimCoordList.push_back(StdString(domainName + "_face_y"));
1674	}
1675	} // ugrid convention
1676	} // case unstructured domain
1677	}
1678
1679	if (domain->hasArea)
1680	{
1681	hasArea = true;
1682	cellMeasures += " area" + appendDomId;
1683	}
1684	++idxDomain;
1685	}
1686	else if (1 == axisDomainOrder(i))
1687	{
1688	CAxis* axis = CAxis::get(axisList[idxAxis]);
1689	StdString axisId = axis->getAxisOutputName();
1690
1691	if (compressedOutput && axis->isCompressible())
1692	{
1693	dimIdList.push_back(axisId + "_points");
1694	field->setUseCompressedOutput();
1695	}
1696	else
1697	dimIdList.push_back(axisId);
1698
1699	dimCoordList.push_back(axisId);
1700	++idxAxis;
1701	}
1702	else // scalar
1703	{
1704	/* Do nothing here */
1705	}
1706	}
1707
1708	/*
1709	StdString lonid_loc = (server->intraCommSize > 1)
1710	? StdString("lon").append(appendDomid).append("_local")
1711	: lonid;
1712	StdString latid_loc = (server->intraCommSize > 1)
1713	? StdString("lat").append(appendDomid).append("_local")
1714	: latid;
1715	*/
1716	StdString fieldid = field->getFieldOutputName();
1717
1718	nc_type type ;
1719	if (field->prec.isEmpty()) type = NC_FLOAT ;
1720	else
1721	{
1722	if (field->prec==2) type = NC_SHORT ;
1723	else if (field->prec==4) type = NC_FLOAT ;
1724	else if (field->prec==8) type = NC_DOUBLE ;
1725	}
1726
1727	bool wtime = !(!field->operation.isEmpty() && field->getOperationTimeType() == func::CFunctor::once);
1728
1729	if (wtime)
1730	{
1731
1732	//StdOStringStream oss;
1733	// oss << "time_" << field->operation.getValue()
1734	// << "_" << field->getRelFile()->output_freq.getValue();
1735	//oss
1736	if (field->getOperationTimeType() == func::CFunctor::instant) coodinates.push_back(string("time_instant"));
1737	else if (field->getOperationTimeType() == func::CFunctor::centered) coodinates.push_back(string("time_centered"));
1738	dims.push_back(timeid);
1739	}
1740
1741	if (compressedOutput && grid->isCompressible())
1742	{
1743	dims.push_back(grid->getId() + "_points");
1744	field->setUseCompressedOutput();
1745	}
1746	else
1747	{
1748	while (!dimIdList.empty())
1749	{
1750	dims.push_back(dimIdList.back());
1751	dimIdList.pop_back();
1752	}
1753	}
1754
1755	while (!dimCoordList.empty())
1756	{
1757	coodinates.push_back(dimCoordList.back());
1758	dimCoordList.pop_back();
1759	}
1760
1761	try
1762	{
1763	SuperClassWriter::addVariable(fieldid, type, dims);
1764
1765	if (!field->standard_name.isEmpty())
1766	SuperClassWriter::addAttribute
1767	("standard_name", field->standard_name.getValue(), &fieldid);
1768
1769	if (!field->long_name.isEmpty())
1770	SuperClassWriter::addAttribute
1771	("long_name", field->long_name.getValue(), &fieldid);
1772
1773	if (!field->unit.isEmpty())
1774	SuperClassWriter::addAttribute
1775	("units", field->unit.getValue(), &fieldid);
1776
1777	if (!field->valid_min.isEmpty())
1778	SuperClassWriter::addAttribute
1779	("valid_min", field->valid_min.getValue(), &fieldid);
1780
1781	if (!field->valid_max.isEmpty())
1782	SuperClassWriter::addAttribute
1783	("valid_max", field->valid_max.getValue(), &fieldid);
1784
1785	if (!field->scale_factor.isEmpty())
1786	SuperClassWriter::addAttribute
1787	("scale_factor", field->scale_factor.getValue(), &fieldid);
1788
1789	if (!field->add_offset.isEmpty())
1790	SuperClassWriter::addAttribute
1791	("add_offset", field->add_offset.getValue(), &fieldid);
1792
1793	SuperClassWriter::addAttribute
1794	("online_operation", field->operation.getValue(), &fieldid);
1795
1796	// write child variables as attributes
1797
1798
1799	vector<CVariable*> listVars = field->getAllVariables() ;
1800	for (vector<CVariable>::iterator it = listVars.begin() ;it != listVars.end(); it++) writeAttribute_(it, fieldid) ;
1801
1802	bool alreadyAddCellMethod = false;
1803	StdString cellMethodsPrefix(""), cellMethodsSuffix("");
1804	if (!field->cell_methods.isEmpty())
1805	{
1806	StdString cellMethodString = field->cell_methods;
1807	if (field->cell_methods_mode.isEmpty() \|\|
1808	(CField::cell_methods_mode_attr::overwrite == field->cell_methods_mode))
1809	{
1810	SuperClassWriter::addAttribute("cell_methods", cellMethodString, &fieldid);
1811	alreadyAddCellMethod = true;
1812	}
1813	else
1814	{
1815	switch (field->cell_methods_mode)
1816	{
1817	case (CField::cell_methods_mode_attr::prefix):
1818	cellMethodsPrefix = cellMethodString;
1819	cellMethodsPrefix += " ";
1820	break;
1821	case (CField::cell_methods_mode_attr::suffix):
1822	cellMethodsSuffix = " ";
1823	cellMethodsSuffix += cellMethodString;
1824	break;
1825	case (CField::cell_methods_mode_attr::none):
1826	break;
1827	default:
1828	break;
1829	}
1830	}
1831	}
1832
1833
1834	if (wtime)
1835	{
1836	CDuration freqOp = field->freq_op.getValue();
1837	freqOp.solveTimeStep(*context->calendar);
1838	StdString freqOpStr = freqOp.toStringUDUnits();
1839	SuperClassWriter::addAttribute("interval_operation", freqOpStr, &fieldid);
1840
1841	CDuration freqOut = field->getRelFile()->output_freq.getValue();
1842	freqOut.solveTimeStep(*context->calendar);
1843	SuperClassWriter::addAttribute("interval_write", freqOut.toStringUDUnits(), &fieldid);
1844
1845	StdString cellMethods(cellMethodsPrefix + "time: ");
1846	if (field->operation.getValue() == "instant") cellMethods += "point";
1847	else if (field->operation.getValue() == "average") cellMethods += "mean";
1848	else if (field->operation.getValue() == "accumulate") cellMethods += "sum";
1849	else cellMethods += field->operation;
1850	if (freqOp.resolve(context->calendar) != freqOut.resolve(context->calendar))
1851	cellMethods += " (interval: " + freqOpStr + ")";
1852	cellMethods += cellMethodsSuffix;
1853	if (!alreadyAddCellMethod)
1854	SuperClassWriter::addAttribute("cell_methods", cellMethods, &fieldid);
1855	}
1856
1857	if (hasArea)
1858	SuperClassWriter::addAttribute("cell_measures", cellMeasures, &fieldid);
1859
1860	if (!field->default_value.isEmpty())
1861	{
1862	double default_value = field->default_value.getValue();
1863	float fdefault_value = (float)default_value;
1864	if (type == NC_DOUBLE)
1865	SuperClassWriter::setDefaultValue(fieldid, &default_value);
1866	else
1867	SuperClassWriter::setDefaultValue(fieldid, &fdefault_value);
1868	}
1869	else
1870	SuperClassWriter::setDefaultValue(fieldid, (double*)NULL);
1871
1872	if (field->compression_level.isEmpty())
1873	field->compression_level = field->file->compression_level.isEmpty() ? 0 : field->file->compression_level;
1874	SuperClassWriter::setCompressionLevel(fieldid, field->compression_level);
1875
1876	{ // Ecriture des coordonnes
1877
1878	StdString coordstr; //boost::algorithm::join(coodinates, " ")
1879	std::vector<StdString>::iterator
1880	itc = coodinates.begin(), endc = coodinates.end();
1881
1882	for (; itc!= endc; itc++)
1883	{
1884	StdString & coord = *itc;
1885	if (itc+1 != endc)
1886	coordstr.append(coord).append(" ");
1887	else coordstr.append(coord);
1888	}
1889
1890	SuperClassWriter::addAttribute("coordinates", coordstr, &fieldid);
1891
1892	}
1893	}
1894	catch (CNetCdfException& e)
1895	{
1896	StdString msg("On writing field : ");
1897	msg.append(fieldid); msg.append("\n");
1898	msg.append("In the context : ");
1899	msg.append(context->getId()); msg.append("\n");
1900	msg.append(e.what());
1901	ERROR("CNc4DataOutput::writeField_(CField* field)", << msg);
1902	}
1903	} // writeField_()
1904
1905	//--------------------------------------------------------------
1906
1907	void CNc4DataOutput::writeFile_ (CFile* file)
1908	{
1909	StdString filename = file->getFileOutputName();
1910	StdString description = (!file->description.isEmpty())
1911	? file->description.getValue()
1912	: StdString("Created by xios");
1913
1914	singleDomain = (file->nbDomains == 1);
1915
1916	try
1917	{
1918	if (SuperClassWriter::useCFConvention)
1919	this->writeFileAttributes(filename, description,
1920	StdString("CF-1.5"),
1921	StdString("An IPSL model"),
1922	this->getTimeStamp());
1923	else
1924	this->writeFileAttributes(filename, description,
1925	StdString("UGRID"),
1926	StdString("An IPSL model"),
1927	this->getTimeStamp());
1928
1929
1930	if (!appendMode)
1931	SuperClassWriter::addDimension("axis_nbounds", 2);
1932	}
1933	catch (CNetCdfException& e)
1934	{
1935	StdString msg("On writing file : ");
1936	msg.append(filename); msg.append("\n");
1937	msg.append("In the context : ");
1938	CContext* context = CContext::getCurrent() ;
1939	msg.append(context->getId()); msg.append("\n");
1940	msg.append(e.what());
1941	ERROR("CNc4DataOutput::writeFile_ (CFile* file)", << msg);
1942	}
1943	}
1944
1945	void CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)
1946	{
1947	StdString name = var->getVariableOutputName();
1948
1949	try
1950	{
1951	if (var->type.getValue() == CVariable::type_attr::t_int \|\| var->type.getValue() == CVariable::type_attr::t_int32)
1952	addAttribute(name, var->getData<int>(), &fieldId);
1953	else if (var->type.getValue() == CVariable::type_attr::t_int16)
1954	addAttribute(name, var->getData<short int>(), &fieldId);
1955	else if (var->type.getValue() == CVariable::type_attr::t_float)
1956	addAttribute(name, var->getData<float>(), &fieldId);
1957	else if (var->type.getValue() == CVariable::type_attr::t_double)
1958	addAttribute(name, var->getData<double>(), &fieldId);
1959	else if (var->type.getValue() == CVariable::type_attr::t_string)
1960	addAttribute(name, var->getData<string>(), &fieldId);
1961	else
1962	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)",
1963	<< "Unsupported variable of type " << var->type.getStringValue());
1964	}
1965	catch (CNetCdfException& e)
1966	{
1967	StdString msg("On writing attributes of variable with name : ");
1968	msg.append(name); msg.append("in the field "); msg.append(fieldId); msg.append("\n");
1969	msg.append("In the context : ");
1970	CContext* context = CContext::getCurrent() ;
1971	msg.append(context->getId()); msg.append("\n");
1972	msg.append(e.what());
1973	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", << msg);
1974	}
1975	}
1976
1977	void CNc4DataOutput::writeAttribute_ (CVariable* var)
1978	{
1979	StdString name = var->getVariableOutputName();
1980
1981	try
1982	{
1983	if (var->type.getValue() == CVariable::type_attr::t_int \|\| var->type.getValue() == CVariable::type_attr::t_int32)
1984	addAttribute(name, var->getData<int>());
1985	else if (var->type.getValue() == CVariable::type_attr::t_int16)
1986	addAttribute(name, var->getData<short int>());
1987	else if (var->type.getValue() == CVariable::type_attr::t_float)
1988	addAttribute(name, var->getData<float>());
1989	else if (var->type.getValue() == CVariable::type_attr::t_double)
1990	addAttribute(name, var->getData<double>());
1991	else if (var->type.getValue() == CVariable::type_attr::t_string)
1992	addAttribute(name, var->getData<string>());
1993	else
1994	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)",
1995	<< "Unsupported variable of type " << var->type.getStringValue());
1996	}
1997	catch (CNetCdfException& e)
1998	{
1999	StdString msg("On writing attributes of variable with name : ");
2000	msg.append(name); msg.append("\n");
2001	msg.append("In the context : ");
2002	CContext* context = CContext::getCurrent() ;
2003	msg.append(context->getId()); msg.append("\n");
2004	msg.append(e.what());
2005	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", << msg);
2006	}
2007	}
2008
2009	void CNc4DataOutput::syncFile_ (void)
2010	{
2011	try
2012	{
2013	SuperClassWriter::sync() ;
2014	}
2015	catch (CNetCdfException& e)
2016	{
2017	StdString msg("On synchronizing the write among processes");
2018	msg.append("In the context : ");
2019	CContext* context = CContext::getCurrent() ;
2020	msg.append(context->getId()); msg.append("\n");
2021	msg.append(e.what());
2022	ERROR("CNc4DataOutput::syncFile_ (void)", << msg);
2023	}
2024	}
2025
2026	void CNc4DataOutput::closeFile_ (void)
2027	{
2028	try
2029	{
2030	SuperClassWriter::close() ;
2031	}
2032	catch (CNetCdfException& e)
2033	{
2034	StdString msg("On closing file");
2035	msg.append("In the context : ");
2036	CContext* context = CContext::getCurrent() ;
2037	msg.append(context->getId()); msg.append("\n");
2038	msg.append(e.what());
2039	ERROR("CNc4DataOutput::syncFile_ (void)", << msg);
2040	}
2041
2042	}
2043
2044	//---------------------------------------------------------------
2045
2046	StdString CNc4DataOutput::getTimeStamp(void) const
2047	{
2048	const int buffer_size = 100;
2049	time_t rawtime;
2050	struct tm * timeinfo = NULL;
2051	char buffer [buffer_size];
2052
2053	time ( &rawtime );
2054	timeinfo = localtime ( &rawtime );
2055	strftime (buffer, buffer_size, "%Y-%b-%d %H:%M:%S %Z", timeinfo);
2056
2057	return (StdString(buffer));
2058	}
2059
2060	//---------------------------------------------------------------
2061
2062	void CNc4DataOutput::writeFieldData_ (CField* field)
2063	{
2064	CContext* context = CContext::getCurrent();
2065	CContextServer* server = context->server;
2066	CGrid* grid = field->grid;
2067
2068	if (field->getNStep()<1) return ;
2069
2070	if (!grid->doGridHaveDataToWrite())
2071	if (SuperClass::type == MULTI_FILE \|\| !isCollective) return;
2072
2073	StdString fieldid = field->getFieldOutputName();
2074
2075	StdOStringStream oss;
2076	string timeAxisId;
2077	if (field->getOperationTimeType() == func::CFunctor::instant) timeAxisId = "time_instant";
2078	else if (field->getOperationTimeType() == func::CFunctor::centered) timeAxisId = "time_centered";
2079
2080	StdString timeBoundId = getTimeCounterName() + "_bounds";
2081
2082	StdString timeAxisBoundId;
2083	if (field->getOperationTimeType() == func::CFunctor::instant) timeAxisBoundId = "time_instant_bounds";
2084	else if (field->getOperationTimeType() == func::CFunctor::centered) timeAxisBoundId = "time_centered_bounds";
2085
2086	if (!field->wasWritten())
2087	{
2088	if (appendMode && field->file->record_offset.isEmpty() &&
2089	field->getOperationTimeType() != func::CFunctor::once)
2090	{
2091	field->resetNStep(getRecordFromTime(field->last_Write_srv) + 1);
2092	}
2093
2094	field->setWritten();
2095	}
2096
2097
2098	CArray<double,1> time_data(1);
2099	CArray<double,1> time_data_bound(2);
2100	CArray<double,1> time_counter(1);
2101	CArray<double,1> time_counter_bound(2);
2102
2103	bool wtime = (field->getOperationTimeType() != func::CFunctor::once);
2104
2105	if (wtime)
2106	{
2107	Time lastWrite = field->last_Write_srv;
2108	Time lastLastWrite = field->lastlast_Write_srv;
2109
2110	if (field->getOperationTimeType() == func::CFunctor::instant)
2111	time_data(0) = lastWrite;
2112	else if (field->getOperationTimeType() == func::CFunctor::centered)
2113	time_data(0) = (lastWrite + lastLastWrite) / 2;
2114
2115	if (field->getOperationTimeType() == func::CFunctor::instant)
2116	time_data_bound(0) = time_data_bound(1) = lastWrite;
2117	else if (field->getOperationTimeType() == func::CFunctor::centered)
2118	{
2119	time_data_bound(0) = lastLastWrite;
2120	time_data_bound(1) = lastWrite;
2121	}
2122
2123	if (field->file->time_counter == CFile::time_counter_attr::instant)
2124	time_counter(0) = lastWrite;
2125	else if (field->file->time_counter == CFile::time_counter_attr::centered)
2126	time_counter(0) = (lastWrite + lastLastWrite) / 2;
2127	else if (field->file->time_counter == CFile::time_counter_attr::record)
2128	time_counter(0) = field->getNStep() - 1;
2129
2130
2131	if (field->file->time_counter == CFile::time_counter_attr::instant)
2132	time_counter_bound(0) = time_counter_bound(1) = lastWrite;
2133	else if (field->file->time_counter == CFile::time_counter_attr::centered)
2134	{
2135	time_counter_bound(0) = lastLastWrite;
2136	time_counter_bound(1) = lastWrite;
2137	}
2138	else if (field->file->time_counter == CFile::time_counter_attr::record)
2139	time_counter_bound(0) = time_counter_bound(1) = field->getNStep() - 1;
2140	}
2141
2142	bool isRoot = (server->intraCommRank == 0);
2143
2144	if (!field->scale_factor.isEmpty() \|\| !field->add_offset.isEmpty())
2145	{
2146	double scaleFactor = 1.0;
2147	double addOffset = 0.0;
2148	if (!field->scale_factor.isEmpty()) scaleFactor = field->scale_factor;
2149	if (!field->add_offset.isEmpty()) addOffset = field->add_offset;
2150	field->scaleFactorAddOffset(scaleFactor, addOffset);
2151	}
2152
2153	try
2154	{
2155	size_t writtenSize;
2156	if (field->getUseCompressedOutput())
2157	writtenSize = grid->getNumberWrittenIndexes();
2158	else
2159	writtenSize = grid->getWrittenDataSize();
2160
2161	CArray<double,1> fieldData(writtenSize);
2162	if (!field->default_value.isEmpty()) fieldData = field->default_value;
2163
2164	if (field->getUseCompressedOutput())
2165	field->outputCompressedField(fieldData);
2166	else
2167	field->outputField(fieldData);
2168
2169	if (!field->prec.isEmpty() && field->prec == 2) fieldData = round(fieldData);
2170
2171	switch (SuperClass::type)
2172	{
2173	case (MULTI_FILE) :
2174	{
2175	SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1);
2176	if (wtime)
2177	{
2178	SuperClassWriter::writeData(time_data, timeAxisId, isCollective, field->getNStep() - 1);
2179	SuperClassWriter::writeData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1);
2180	if (field->file->time_counter != CFile::time_counter_attr::none)
2181	{
2182	SuperClassWriter::writeData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1);
2183	if (field->file->time_counter != CFile::time_counter_attr::record)
2184	SuperClassWriter::writeData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1);
2185	}
2186	}
2187	break;
2188	}
2189	case (ONE_FILE) :
2190	{
2191	// const std::vector<int>& nZoomBeginGlobal = grid->getDistributionServer()->getZoomBeginGlobal();
2192	// const std::vector<int>& nZoomBeginServer = grid->getDistributionServer()->getZoomBeginServer();
2193	// const std::vector<int>& nZoomSizeServer = grid->getDistributionServer()->getZoomSizeServer();
2194
2195	// std::vector<StdSize> start, count;
2196
2197	// if (field->getUseCompressedOutput())
2198	// {
2199	// if (grid->isCompressible())
2200	// {
2201	// start.push_back(grid->getOffsetWrittenIndexes());
2202	// count.push_back(grid->getNumberWrittenIndexes());
2203	// }
2204	// else
2205	// {
2206	// CArray<int,1> axisDomainOrder = grid->axis_domain_order;
2207	// std::vector<StdString> domainList = grid->getDomainList();
2208	// std::vector<StdString> axisList = grid->getAxisList();
2209	// int numElement = axisDomainOrder.numElements();
2210	// int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1;
2211	// int idx = nZoomBeginGlobal.size() - 1;
2212
2213	// start.reserve(nZoomBeginGlobal.size());
2214	// count.reserve(nZoomBeginGlobal.size());
2215
2216
2217	// for (int i = numElement - 1; i >= 0; --i)
2218	// {
2219	// if (2 == axisDomainOrder(i))
2220	// {
2221	// CDomain* domain = CDomain::get(domainList[idxDomain]);
2222
2223	// if (domain->isCompressible())
2224	// {
2225	// start.push_back(domain->getOffsetWrittenIndexes());
2226	// count.push_back(domain->getNumberWrittenIndexes());
2227	// idx -= 2;
2228	// }
2229	// else
2230	// {
2231	// if ((domain->type) != CDomain::type_attr::unstructured)
2232	// {
2233	// start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2234	// count.push_back(nZoomSizeServer[idx]);
2235	// }
2236	// --idx;
2237	// start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2238	// count.push_back(nZoomSizeServer[idx]);
2239	// --idx;
2240	// }
2241	// --idxDomain;
2242	// }
2243	// else if (1 == axisDomainOrder(i))
2244	// {
2245	// CAxis* axis = CAxis::get(axisList[idxAxis]);
2246
2247	// if (axis->isCompressible())
2248	// {
2249	// start.push_back(axis->getOffsetWrittenIndexes());
2250	// count.push_back(axis->getNumberWrittenIndexes());
2251	// }
2252	// else
2253	// {
2254	// start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2255	// count.push_back(nZoomSizeServer[idx]);
2256	// }
2257
2258	// --idxAxis;
2259	// --idx;
2260	// }
2261	// }
2262	// }
2263	const std::vector<int>& nZoomBeginGlobal = grid->getDistributionServer()->getZoomBeginGlobal();
2264	const std::vector<int>& nZoomBeginServer = grid->getDistributionServer()->getZoomBeginServer();
2265	const std::vector<int>& nZoomSizeServer = grid->getDistributionServer()->getZoomSizeServer();
2266
2267	std::vector<StdSize> start, count;
2268
2269	if (field->getUseCompressedOutput())
2270	{
2271	if (grid->isCompressible())
2272	{
2273	start.push_back(grid->getOffsetWrittenIndexes());
2274	count.push_back(grid->getNumberWrittenIndexes());
2275	}
2276	else
2277	{
2278	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
2279	std::vector<StdString> domainList = grid->getDomainList();
2280	std::vector<StdString> axisList = grid->getAxisList();
2281	int numElement = axisDomainOrder.numElements();
2282	int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1;
2283	int idx = nZoomBeginGlobal.size() - 1;
2284
2285	start.reserve(nZoomBeginGlobal.size());
2286	count.reserve(nZoomBeginGlobal.size());
2287
2288
2289	for (int i = numElement - 1; i >= 0; --i)
2290	{
2291	if (2 == axisDomainOrder(i))
2292	{
2293	CDomain* domain = CDomain::get(domainList[idxDomain]);
2294
2295	if (domain->isCompressible())
2296	{
2297	start.push_back(domain->getOffsetWrittenIndexes());
2298	count.push_back(domain->getNumberWrittenIndexes());
2299	idx -= 2;
2300	}
2301	else
2302	{
2303	if ((domain->type) != CDomain::type_attr::unstructured)
2304	{
2305	start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2306	count.push_back(nZoomSizeServer[idx]);
2307	}
2308	--idx;
2309	start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2310	count.push_back(nZoomSizeServer[idx]);
2311	--idx;
2312	}
2313	--idxDomain;
2314	}
2315	else if (1 == axisDomainOrder(i))
2316	{
2317	CAxis* axis = CAxis::get(axisList[idxAxis]);
2318
2319	if (axis->isCompressible())
2320	{
2321	start.push_back(axis->getOffsetWrittenIndexes());
2322	count.push_back(axis->getNumberWrittenIndexes());
2323	}
2324	else
2325	{
2326	start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2327	count.push_back(nZoomSizeServer[idx]);
2328	}
2329
2330	--idxAxis;
2331	--idx;
2332	}
2333	}
2334	}
2335	}
2336	else
2337	{
2338	// CArray<int,1> axisDomainOrder = grid->axis_domain_order;
2339	// std::vector<StdString> domainList = grid->getDomainList();
2340	// std::vector<StdString> axisList = grid->getAxisList();
2341	// int numElement = axisDomainOrder.numElements();
2342	// int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1;
2343	// int idx = nZoomBeginGlobal.size() - 1;
2344
2345	// start.reserve(nZoomBeginGlobal.size());
2346	// count.reserve(nZoomBeginGlobal.size());
2347
2348	// for (int i = numElement - 1; i >= 0; --i)
2349	// {
2350	// if (2 == axisDomainOrder(i))
2351	// {
2352	// CDomain* domain = CDomain::get(domainList[idxDomain]);
2353	// if ((domain->type) != CDomain::type_attr::unstructured)
2354	// {
2355	// start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2356	// count.push_back(nZoomSizeServer[idx]);
2357	// }
2358	// --idx ;
2359	// start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2360	// count.push_back(nZoomSizeServer[idx]);
2361	// --idx ;
2362	// --idxDomain;
2363	// }
2364	// else if (1 == axisDomainOrder(i))
2365	// {
2366	// start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2367	// count.push_back(nZoomSizeServer[idx]);
2368	// --idx;
2369	// }
2370	// else
2371	// {
2372	// if (1 == axisDomainOrder.numElements())
2373	// {
2374	// start.push_back(0);
2375	// count.push_back(1);
2376	// }
2377	// --idx;
2378	// }
2379	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
2380	std::vector<StdString> domainList = grid->getDomainList();
2381	std::vector<StdString> axisList = grid->getAxisList();
2382	int numElement = axisDomainOrder.numElements();
2383	int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1;
2384	int idx = domainList.size() * 2 + axisList.size() - 1;// nZoomBeginGlobal.size() - 1;
2385
2386	start.reserve(nZoomBeginGlobal.size());
2387	count.reserve(nZoomBeginGlobal.size());
2388
2389	for (int i = numElement - 1; i >= 0; --i)
2390	{
2391	if (2 == axisDomainOrder(i))
2392	{
2393	CDomain* domain = CDomain::get(domainList[idxDomain]);
2394	if ((domain->type) != CDomain::type_attr::unstructured)
2395	{
2396	// start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2397	// count.push_back(nZoomSizeServer[idx]);
2398	// start.push_back((domain->getStartWriteIndex())[idx]);
2399	// count.push_back((domain->getCountWriteIndex())[idx]);
2400	start.push_back(domain->zoom_jbegin - domain->global_zoom_jbegin);
2401	count.push_back(domain->zoom_nj);
2402	}
2403	--idx ;
2404	// start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2405	// count.push_back(nZoomSizeServer[idx]);
2406	// start.push_back((domain->getStartWriteIndex())[idx]);
2407	// count.push_back((domain->getCountWriteIndex())[idx]);
2408	start.push_back(domain->zoom_ibegin - domain->global_zoom_ibegin);
2409	count.push_back(domain->zoom_ni);
2410	--idx ;
2411	--idxDomain;
2412	}
2413	else if (1 == axisDomainOrder(i))
2414	{
2415	CAxis* axis = CAxis::get(axisList[idxAxis]);
2416	// start.push_back(axis->getStartWriteIndex());
2417	// count.push_back(axis->getCountWriteIndex());
2418	start.push_back(axis->zoom_begin - axis->global_zoom_begin);
2419	count.push_back(axis->zoom_n);
2420	--idx;
2421	--idxAxis;
2422	}
2423	else
2424	{
2425	if (1 == axisDomainOrder.numElements())
2426	{
2427	start.push_back(0);
2428	count.push_back(1);
2429	}
2430	--idx;
2431	}
2432	}
2433	}
2434
2435	SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1, &start, &count);
2436	if (wtime)
2437	{
2438	SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot);
2439	SuperClassWriter::writeTimeAxisData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot);
2440	if (field->file->time_counter != CFile::time_counter_attr::none)
2441	{
2442	SuperClassWriter::writeTimeAxisData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1, isRoot);
2443	if (field->file->time_counter != CFile::time_counter_attr::record)
2444	SuperClassWriter::writeTimeAxisData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot);
2445	}
2446	}
2447
2448	break;
2449	}
2450	}
2451	}
2452	catch (CNetCdfException& e)
2453	{
2454	StdString msg("On writing field data: ");
2455	msg.append(fieldid); msg.append("\n");
2456	msg.append("In the context : ");
2457	msg.append(context->getId()); msg.append("\n");
2458	msg.append(e.what());
2459	ERROR("CNc4DataOutput::writeFieldData_ (CField* field)", << msg);
2460	}
2461	}
2462
2463	//---------------------------------------------------------------
2464
2465	void CNc4DataOutput::writeTimeAxis_
2466	(CField* field,
2467	const boost::shared_ptr<CCalendar> cal)
2468	{
2469	StdOStringStream oss;
2470
2471	if (field->getOperationTimeType() == func::CFunctor::once) return ;
2472
2473	// oss << "time_" << field->operation.getValue()
2474	// << "_" << field->getRelFile()->output_freq.getValue();
2475
2476	// StdString axisid = oss.str();
2477	// if (field->getOperationTimeType() == func::CFunctor::centered) axisid="time_centered" ;
2478	// else if (field->getOperationTimeType() == func::CFunctor::instant) axisid="time_instant" ;
2479
2480	StdString axisid("time_centered") ;
2481	StdString axisBoundId("time_centered_bounds");
2482	StdString timeid(getTimeCounterName());
2483	StdString timeBoundId("axis_nbounds");
2484
2485	if (field->getOperationTimeType() == func::CFunctor::instant)
2486	{
2487	axisid = "time_instant";
2488	axisBoundId = "time_instant_bounds";
2489	}
2490
2491	try
2492	{
2493	// Adding time_instant or time_centered
2494	std::vector<StdString> dims;
2495	dims.push_back(timeid);
2496	if (!SuperClassWriter::varExist(axisid))
2497	{
2498	SuperClassWriter::addVariable(axisid, NC_DOUBLE, dims);
2499
2500	CDate timeOrigin=cal->getTimeOrigin() ;
2501	StdOStringStream oss2;
2502	// oss2<<initDate.getYear()<<"-"<<initDate.getMonth()<<"-"<<initDate.getDay()<<" "
2503	// <<initDate.getHour()<<"-"<<initDate.getMinute()<<"-"<<initDate.getSecond() ;
2504	StdString strInitdate=oss2.str() ;
2505	StdString strTimeOrigin=timeOrigin.toString() ;
2506	this->writeTimeAxisAttributes
2507	(axisid, cal->getType(),
2508	StdString("seconds since ").append(strTimeOrigin),
2509	strTimeOrigin, axisBoundId);
2510	}
2511
2512	// Adding time_instant_bounds or time_centered_bounds variables
2513	if (!SuperClassWriter::varExist(axisBoundId))
2514	{
2515	dims.clear() ;
2516	dims.push_back(timeid);
2517	dims.push_back(timeBoundId);
2518	SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims);
2519	}
2520
2521	if (field->file->time_counter != CFile::time_counter_attr::none)
2522	{
2523	// Adding time_counter
2524	axisid = getTimeCounterName();
2525	axisBoundId = getTimeCounterName() + "_bounds";
2526	dims.clear();
2527	dims.push_back(timeid);
2528	if (!SuperClassWriter::varExist(axisid))
2529	{
2530	SuperClassWriter::addVariable(axisid, NC_DOUBLE, dims);
2531	SuperClassWriter::addAttribute("axis", string("T"), &axisid);
2532
2533	if (field->file->time_counter != CFile::time_counter_attr::record)
2534	{
2535	CDate timeOrigin = cal->getTimeOrigin();
2536	StdString strTimeOrigin = timeOrigin.toString();
2537
2538	this->writeTimeAxisAttributes(axisid, cal->getType(),
2539	StdString("seconds since ").append(strTimeOrigin),
2540	strTimeOrigin, axisBoundId);
2541	}
2542	}
2543
2544	// Adding time_counter_bound dimension
2545	if (field->file->time_counter != CFile::time_counter_attr::record)
2546	{
2547	if (!SuperClassWriter::varExist(axisBoundId))
2548	{
2549	dims.clear();
2550	dims.push_back(timeid);
2551	dims.push_back(timeBoundId);
2552	SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims);
2553	}
2554	}
2555	}
2556	}
2557	catch (CNetCdfException& e)
2558	{
2559	StdString msg("On writing time axis data: ");
2560	msg.append("In the context : ");
2561	CContext* context = CContext::getCurrent() ;
2562	msg.append(context->getId()); msg.append("\n");
2563	msg.append(e.what());
2564	ERROR("CNc4DataOutput::writeTimeAxis_ (CField* field, \
2565	const boost::shared_ptr<CCalendar> cal)", << msg);
2566	}
2567	}
2568
2569	//---------------------------------------------------------------
2570
2571	void CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name,
2572	const StdString & calendar,
2573	const StdString & units,
2574	const StdString & time_origin,
2575	const StdString & time_bounds,
2576	const StdString & standard_name,
2577	const StdString & long_name)
2578	{
2579	try
2580	{
2581	SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name);
2582	SuperClassWriter::addAttribute("long_name", long_name , &axis_name);
2583	SuperClassWriter::addAttribute("calendar", calendar , &axis_name);
2584	SuperClassWriter::addAttribute("units", units , &axis_name);
2585	SuperClassWriter::addAttribute("time_origin", time_origin , &axis_name);
2586	SuperClassWriter::addAttribute("bounds", time_bounds , &axis_name);
2587	}
2588	catch (CNetCdfException& e)
2589	{
2590	StdString msg("On writing time axis Attribute: ");
2591	msg.append("In the context : ");
2592	CContext* context = CContext::getCurrent() ;
2593	msg.append(context->getId()); msg.append("\n");
2594	msg.append(e.what());
2595	ERROR("CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, \
2596	const StdString & calendar,\
2597	const StdString & units, \
2598	const StdString & time_origin, \
2599	const StdString & time_bounds, \
2600	const StdString & standard_name, \
2601	const StdString & long_name)", << msg);
2602	}
2603	}
2604
2605	//---------------------------------------------------------------
2606
2607	void CNc4DataOutput::writeAxisAttributes(const StdString & axis_name,
2608	const StdString & axis,
2609	const StdString & standard_name,
2610	const StdString & long_name,
2611	const StdString & units,
2612	const StdString & nav_model)
2613	{
2614	try
2615	{
2616	if (!axis.empty())
2617	SuperClassWriter::addAttribute("axis" , axis , &axis_name);
2618
2619	SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name);
2620	SuperClassWriter::addAttribute("long_name" , long_name , &axis_name);
2621	SuperClassWriter::addAttribute("units" , units , &axis_name);
2622	// SuperClassWriter::addAttribute("nav_model" , nav_model , &axis_name);
2623	}
2624	catch (CNetCdfException& e)
2625	{
2626	StdString msg("On writing Axis Attribute: ");
2627	msg.append("In the context : ");
2628	CContext* context = CContext::getCurrent() ;
2629	msg.append(context->getId()); msg.append("\n");
2630	msg.append(e.what());
2631	ERROR("CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, \
2632	const StdString & axis, \
2633	const StdString & standard_name, \
2634	const StdString & long_name, \
2635	const StdString & units, \
2636	const StdString & nav_model)", << msg);
2637	}
2638	}
2639
2640	//---------------------------------------------------------------
2641
2642	void CNc4DataOutput::writeLocalAttributes
2643	(int ibegin, int ni, int jbegin, int nj, StdString domid)
2644	{
2645	try
2646	{
2647	SuperClassWriter::addAttribute(StdString("ibegin").append(domid), ibegin);
2648	SuperClassWriter::addAttribute(StdString("ni" ).append(domid), ni);
2649	SuperClassWriter::addAttribute(StdString("jbegin").append(domid), jbegin);
2650	SuperClassWriter::addAttribute(StdString("nj" ).append(domid), nj);
2651	}
2652	catch (CNetCdfException& e)
2653	{
2654	StdString msg("On writing Local Attributes: ");
2655	msg.append("In the context : ");
2656	CContext* context = CContext::getCurrent() ;
2657	msg.append(context->getId()); msg.append("\n");
2658	msg.append(e.what());
2659	ERROR("CNc4DataOutput::writeLocalAttributes \
2660	(int ibegin, int ni, int jbegin, int nj, StdString domid)", << msg);
2661	}
2662
2663	}
2664
2665	void CNc4DataOutput::writeLocalAttributes_IOIPSL(const StdString& dimXid, const StdString& dimYid,
2666	int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)
2667	{
2668	CArray<int,1> array(2) ;
2669
2670	try
2671	{
2672	SuperClassWriter::addAttribute("DOMAIN_number_total",size ) ;
2673	SuperClassWriter::addAttribute("DOMAIN_number", rank) ;
2674	array = SuperClassWriter::getDimension(dimXid) + 1, SuperClassWriter::getDimension(dimYid) + 1;
2675	SuperClassWriter::addAttribute("DOMAIN_dimensions_ids",array) ;
2676	array=ni_glo,nj_glo ;
2677	SuperClassWriter::addAttribute("DOMAIN_size_global", array) ;
2678	array=ni,nj ;
2679	SuperClassWriter::addAttribute("DOMAIN_size_local", array) ;
2680	array=ibegin+1,jbegin+1 ;
2681	SuperClassWriter::addAttribute("DOMAIN_position_first", array) ;
2682	array=ibegin+ni-1+1,jbegin+nj-1+1 ;
2683	SuperClassWriter::addAttribute("DOMAIN_position_last",array) ;
2684	array=0,0 ;
2685	SuperClassWriter::addAttribute("DOMAIN_halo_size_start", array) ;
2686	SuperClassWriter::addAttribute("DOMAIN_halo_size_end", array);
2687	SuperClassWriter::addAttribute("DOMAIN_type",string("box")) ;
2688	/*
2689	SuperClassWriter::addAttribute("DOMAIN_DIM_N001",string("x")) ;
2690	SuperClassWriter::addAttribute("DOMAIN_DIM_N002",string("y")) ;
2691	SuperClassWriter::addAttribute("DOMAIN_DIM_N003",string("axis_A")) ;
2692	SuperClassWriter::addAttribute("DOMAIN_DIM_N004",string("time_counter")) ;
2693	*/
2694	}
2695	catch (CNetCdfException& e)
2696	{
2697	StdString msg("On writing Local Attributes IOIPSL \n");
2698	msg.append("In the context : ");
2699	CContext* context = CContext::getCurrent() ;
2700	msg.append(context->getId()); msg.append("\n");
2701	msg.append(e.what());
2702	ERROR("CNc4DataOutput::writeLocalAttributes_IOIPSL \
2703	(int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)", << msg);
2704	}
2705	}
2706	//---------------------------------------------------------------
2707
2708	void CNc4DataOutput:: writeFileAttributes(const StdString & name,
2709	const StdString & description,
2710	const StdString & conventions,
2711	const StdString & production,
2712	const StdString & timeStamp)
2713	{
2714	try
2715	{
2716	SuperClassWriter::addAttribute("name" , name);
2717	SuperClassWriter::addAttribute("description", description);
2718	SuperClassWriter::addAttribute("title" , description);
2719	SuperClassWriter::addAttribute("Conventions", conventions);
2720	SuperClassWriter::addAttribute("production" , production);
2721	SuperClassWriter::addAttribute("timeStamp" , timeStamp);
2722	}
2723	catch (CNetCdfException& e)
2724	{
2725	StdString msg("On writing File Attributes \n ");
2726	msg.append("In the context : ");
2727	CContext* context = CContext::getCurrent() ;
2728	msg.append(context->getId()); msg.append("\n");
2729	msg.append(e.what());
2730	ERROR("CNc4DataOutput:: writeFileAttributes(const StdString & name, \
2731	const StdString & description, \
2732	const StdString & conventions, \
2733	const StdString & production, \
2734	const StdString & timeStamp)", << msg);
2735	}
2736	}
2737
2738	//---------------------------------------------------------------
2739
2740	void CNc4DataOutput::writeMaskAttributes(const StdString & mask_name,
2741	int data_dim,
2742	int data_ni,
2743	int data_nj,
2744	int data_ibegin,
2745	int data_jbegin)
2746	{
2747	try
2748	{
2749	SuperClassWriter::addAttribute("data_dim" , data_dim , &mask_name);
2750	SuperClassWriter::addAttribute("data_ni" , data_ni , &mask_name);
2751	SuperClassWriter::addAttribute("data_nj" , data_nj , &mask_name);
2752	SuperClassWriter::addAttribute("data_ibegin", data_ibegin, &mask_name);
2753	SuperClassWriter::addAttribute("data_jbegin", data_jbegin, &mask_name);
2754	}
2755	catch (CNetCdfException& e)
2756	{
2757	StdString msg("On writing Mask Attributes \n ");
2758	msg.append("In the context : ");
2759	CContext* context = CContext::getCurrent() ;
2760	msg.append(context->getId()); msg.append("\n");
2761	msg.append(e.what());
2762	ERROR("CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, \
2763	int data_dim, \
2764	int data_ni, \
2765	int data_nj, \
2766	int data_ibegin, \
2767	int data_jbegin)", << msg);
2768	}
2769	}
2770
2771	///--------------------------------------------------------------
2772
2773	StdSize CNc4DataOutput::getRecordFromTime(Time time)
2774	{
2775	std::map<Time, StdSize>::const_iterator it = timeToRecordCache.find(time);
2776	if (it == timeToRecordCache.end())
2777	{
2778	StdString timeAxisBoundsId(getTimeCounterName() + "_bounds");
2779	if (!SuperClassWriter::varExist(timeAxisBoundsId))
2780	timeAxisBoundsId = "time_instant_bounds";
2781
2782	CArray<double,2> timeAxisBounds;
2783	SuperClassWriter::getTimeAxisBounds(timeAxisBounds, timeAxisBoundsId, isCollective);
2784
2785	StdSize record = 0;
2786	double dtime(time);
2787	for (int n = timeAxisBounds.extent(1) - 1; n >= 0; n--)
2788	{
2789	if (timeAxisBounds(1, n) < dtime)
2790	{
2791	record = n + 1;
2792	break;
2793	}
2794	}
2795	it = timeToRecordCache.insert(std::make_pair(time, record)).first;
2796	}
2797	return it->second;
2798	}
2799
2800	///--------------------------------------------------------------
2801
2802	bool CNc4DataOutput::isWrittenDomain(const std::string& domainName) const
2803	{
2804	return (this->writtenDomains.find(domainName) != this->writtenDomains.end());
2805	}
2806
2807	bool CNc4DataOutput::isWrittenCompressedDomain(const std::string& domainName) const
2808	{
2809	return (this->writtenCompressedDomains.find(domainName) != this->writtenCompressedDomains.end());
2810	}
2811
2812	bool CNc4DataOutput::isWrittenAxis(const std::string& axisName) const
2813	{
2814	return (this->writtenAxis.find(axisName) != this->writtenAxis.end());
2815	}
2816
2817	bool CNc4DataOutput::isWrittenCompressedAxis(const std::string& axisName) const
2818	{
2819	return (this->writtenCompressedAxis.find(axisName) != this->writtenCompressedAxis.end());
2820	}
2821
2822	bool CNc4DataOutput::isWrittenScalar(const std::string& scalarName) const
2823	{
2824	return (this->writtenScalar.find(scalarName) != this->writtenScalar.end());
2825	}
2826
2827	void CNc4DataOutput::setWrittenDomain(const std::string& domainName)
2828	{
2829	this->writtenDomains.insert(domainName);
2830	}
2831
2832	void CNc4DataOutput::setWrittenCompressedDomain(const std::string& domainName)
2833	{
2834	this->writtenCompressedDomains.insert(domainName);
2835	}
2836
2837	void CNc4DataOutput::setWrittenAxis(const std::string& axisName)
2838	{
2839	this->writtenAxis.insert(axisName);
2840	}
2841
2842	void CNc4DataOutput::setWrittenCompressedAxis(const std::string& axisName)
2843	{
2844	this->writtenCompressedAxis.insert(axisName);
2845	}
2846
2847	void CNc4DataOutput::setWrittenScalar(const std::string& scalarName)
2848	{
2849	this->writtenScalar.insert(scalarName);
2850	}
2851	} // namespace xios

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source: XIOS/dev/dev_olga/src/io/nc4_data_output.cpp @ 1130

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