[630] | 1 | /*! |
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| 2 | \file axis_algorithm_interpolate.cpp |
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| 3 | \author Ha NGUYEN |
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| 4 | \since 23 June 2015 |
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| 5 | \date 02 Jul 2015 |
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| 6 | |
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| 7 | \brief Algorithm for interpolation on an axis. |
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| 8 | */ |
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| 9 | #include "axis_algorithm_interpolate.hpp" |
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[933] | 10 | #include "axis.hpp" |
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| 11 | #include "interpolate_axis.hpp" |
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[630] | 12 | #include <algorithm> |
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| 13 | #include "context.hpp" |
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| 14 | #include "context_client.hpp" |
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| 15 | #include "utils.hpp" |
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[827] | 16 | #include "grid.hpp" |
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[933] | 17 | #include "grid_transformation_factory_impl.hpp" |
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[827] | 18 | #include "distribution_client.hpp" |
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[1412] | 19 | #include "timer.hpp" |
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[630] | 20 | |
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| 21 | namespace xios { |
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[933] | 22 | CGenericAlgorithmTransformation* CAxisAlgorithmInterpolate::create(CGrid* gridDst, CGrid* gridSrc, |
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| 23 | CTransformation<CAxis>* transformation, |
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| 24 | int elementPositionInGrid, |
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| 25 | std::map<int, int>& elementPositionInGridSrc2ScalarPosition, |
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| 26 | std::map<int, int>& elementPositionInGridSrc2AxisPosition, |
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| 27 | std::map<int, int>& elementPositionInGridSrc2DomainPosition, |
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| 28 | std::map<int, int>& elementPositionInGridDst2ScalarPosition, |
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| 29 | std::map<int, int>& elementPositionInGridDst2AxisPosition, |
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| 30 | std::map<int, int>& elementPositionInGridDst2DomainPosition) |
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[1612] | 31 | TRY |
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[933] | 32 | { |
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| 33 | std::vector<CAxis*> axisListDestP = gridDst->getAxis(); |
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| 34 | std::vector<CAxis*> axisListSrcP = gridSrc->getAxis(); |
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[630] | 35 | |
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[933] | 36 | CInterpolateAxis* interpolateAxis = dynamic_cast<CInterpolateAxis*> (transformation); |
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| 37 | int axisDstIndex = elementPositionInGridDst2AxisPosition[elementPositionInGrid]; |
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| 38 | int axisSrcIndex = elementPositionInGridSrc2AxisPosition[elementPositionInGrid]; |
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| 39 | |
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| 40 | return (new CAxisAlgorithmInterpolate(axisListDestP[axisDstIndex], axisListSrcP[axisSrcIndex], interpolateAxis)); |
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| 41 | } |
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[1612] | 42 | CATCH |
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[933] | 43 | |
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| 44 | bool CAxisAlgorithmInterpolate::registerTrans() |
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[1612] | 45 | TRY |
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[933] | 46 | { |
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| 47 | CGridTransformationFactory<CAxis>::registerTransformation(TRANS_INTERPOLATE_AXIS, create); |
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| 48 | } |
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[1612] | 49 | CATCH |
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[933] | 50 | |
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[630] | 51 | CAxisAlgorithmInterpolate::CAxisAlgorithmInterpolate(CAxis* axisDestination, CAxis* axisSource, CInterpolateAxis* interpAxis) |
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[827] | 52 | : CAxisAlgorithmTransformation(axisDestination, axisSource), coordinate_(), transPosition_() |
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[1612] | 53 | TRY |
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[630] | 54 | { |
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| 55 | interpAxis->checkValid(axisSource); |
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| 56 | order_ = interpAxis->order.getValue(); |
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[827] | 57 | if (!interpAxis->coordinate.isEmpty()) |
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[630] | 58 | { |
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[827] | 59 | coordinate_ = interpAxis->coordinate.getValue(); |
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| 60 | this->idAuxInputs_.resize(1); |
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| 61 | this->idAuxInputs_[0] = coordinate_; |
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[630] | 62 | } |
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| 63 | } |
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[1612] | 64 | CATCH |
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[630] | 65 | |
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| 66 | /*! |
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| 67 | Compute the index mapping between axis on grid source and one on grid destination |
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| 68 | */ |
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[827] | 69 | void CAxisAlgorithmInterpolate::computeIndexSourceMapping_(const std::vector<CArray<double,1>* >& dataAuxInputs) |
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[1612] | 70 | TRY |
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[630] | 71 | { |
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[1412] | 72 | CTimer::get("CAxisAlgorithmInterpolate::computeIndexSourceMapping_").resume() ; |
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[630] | 73 | CContext* context = CContext::getCurrent(); |
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| 74 | CContextClient* client=context->client; |
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| 75 | int nbClient = client->clientSize; |
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[827] | 76 | CArray<bool,1>& axisMask = axisSrc_->mask; |
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[666] | 77 | int srcSize = axisSrc_->n_glo.getValue(); |
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[827] | 78 | std::vector<CArray<double,1> > vecAxisValue; |
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[630] | 79 | |
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[827] | 80 | // Fill in axis value from coordinate |
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| 81 | fillInAxisValue(vecAxisValue, dataAuxInputs); |
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[896] | 82 | std::vector<double> valueSrc(srcSize); |
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| 83 | std::vector<double> recvBuff(srcSize); |
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| 84 | std::vector<int> indexVec(srcSize); |
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[630] | 85 | |
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[827] | 86 | for (int idx = 0; idx < vecAxisValue.size(); ++idx) |
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| 87 | { |
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| 88 | CArray<double,1>& axisValue = vecAxisValue[idx]; |
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| 89 | retrieveAllAxisValue(axisValue, axisMask, recvBuff, indexVec); |
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| 90 | XIOSAlgorithms::sortWithIndex<double, CVectorStorage>(recvBuff, indexVec); |
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[896] | 91 | for (int i = 0; i < srcSize; ++i) valueSrc[i] = recvBuff[indexVec[i]]; |
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[912] | 92 | computeInterpolantPoint(valueSrc, indexVec, idx); |
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[827] | 93 | } |
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[1412] | 94 | CTimer::get("CAxisAlgorithmInterpolate::computeIndexSourceMapping_").suspend() ; |
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[630] | 95 | } |
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[1612] | 96 | CATCH |
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[630] | 97 | |
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| 98 | /*! |
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| 99 | Compute the interpolant points |
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| 100 | Assume that we have all value of axis source, with these values, need to calculate weight (coeff) of Lagrange polynomial |
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| 101 | \param [in] axisValue all value of axis source |
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[896] | 102 | \param [in] tranPos position of axis on a domain |
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[630] | 103 | */ |
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[912] | 104 | void CAxisAlgorithmInterpolate::computeInterpolantPoint(const std::vector<double>& axisValue, |
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| 105 | const std::vector<int>& indexVec, |
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| 106 | int transPos) |
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[1612] | 107 | TRY |
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[630] | 108 | { |
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| 109 | std::vector<double>::const_iterator itb = axisValue.begin(), ite = axisValue.end(); |
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[937] | 110 | std::vector<double>::const_iterator itLowerBound, itUpperBound, it, iteRange, itfirst, itsecond; |
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[630] | 111 | const double sfmax = NumTraits<double>::sfmax(); |
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[937] | 112 | const double precision = NumTraits<double>::dummy_precision(); |
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[630] | 113 | |
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[666] | 114 | int ibegin = axisDest_->begin.getValue(); |
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[630] | 115 | CArray<double,1>& axisDestValue = axisDest_->value; |
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| 116 | int numValue = axisDestValue.numElements(); |
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| 117 | std::map<int, std::vector<std::pair<int,double> > > interpolatingIndexValues; |
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| 118 | |
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| 119 | for (int idx = 0; idx < numValue; ++idx) |
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| 120 | { |
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[918] | 121 | bool outOfRange = false; |
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[630] | 122 | double destValue = axisDestValue(idx); |
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[918] | 123 | if (destValue < *itb) outOfRange = true; |
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| 124 | |
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[630] | 125 | itLowerBound = std::lower_bound(itb, ite, destValue); |
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| 126 | itUpperBound = std::upper_bound(itb, ite, destValue); |
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| 127 | if ((ite != itUpperBound) && (sfmax == *itUpperBound)) itUpperBound = ite; |
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| 128 | |
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[918] | 129 | if ((ite == itLowerBound) || (ite == itUpperBound)) outOfRange = true; |
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[937] | 130 | |
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[918] | 131 | // We don't do extrapolation FOR NOW, maybe in the future |
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| 132 | if (!outOfRange) |
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[630] | 133 | { |
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[918] | 134 | if ((itLowerBound == itUpperBound) && (itb != itLowerBound)) --itLowerBound; |
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[937] | 135 | double distanceToLower = destValue - *itLowerBound; |
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| 136 | double distanceToUpper = *itUpperBound - destValue; |
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[630] | 137 | int order = (order_ + 1) - 2; |
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[937] | 138 | bool down = (distanceToLower < distanceToUpper) ? true : false; |
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[630] | 139 | for (int k = 0; k < order; ++k) |
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| 140 | { |
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| 141 | if ((itb != itLowerBound) && down) |
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| 142 | { |
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| 143 | --itLowerBound; |
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[937] | 144 | distanceToLower = destValue - *itLowerBound; |
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| 145 | down = (distanceToLower < distanceToUpper) ? true : false; |
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[630] | 146 | continue; |
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| 147 | } |
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| 148 | if ((ite != itUpperBound) && (sfmax != *itUpperBound)) |
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| 149 | { |
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| 150 | ++itUpperBound; |
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[937] | 151 | distanceToUpper = *itUpperBound - destValue; |
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| 152 | down = (distanceToLower < distanceToUpper) ? true : false; |
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| 153 | |
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[630] | 154 | } |
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| 155 | } |
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| 156 | |
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[918] | 157 | iteRange = (ite == itUpperBound) ? itUpperBound : itUpperBound + 1; |
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[937] | 158 | itsecond = it = itLowerBound; ++itsecond; |
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| 159 | while (it < iteRange) |
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[918] | 160 | { |
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[1324] | 161 | while ( (itsecond < ite) && ((*itsecond -*it) < precision) ) |
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[937] | 162 | { ++itsecond; ++it; } |
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[918] | 163 | int index = std::distance(itb, it); |
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| 164 | interpolatingIndexValues[idx+ibegin].push_back(make_pair(indexVec[index],*it)); |
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[937] | 165 | ++it; ++itsecond; |
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[918] | 166 | } |
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[937] | 167 | |
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[630] | 168 | } |
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| 169 | } |
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[827] | 170 | computeWeightedValueAndMapping(interpolatingIndexValues, transPos); |
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[630] | 171 | } |
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[1612] | 172 | CATCH |
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[630] | 173 | |
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| 174 | /*! |
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| 175 | Compute weight (coeff) of Lagrange's polynomial |
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| 176 | \param [in] interpolatingIndexValues the necessary axis value to calculate the coeffs |
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| 177 | */ |
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[827] | 178 | void CAxisAlgorithmInterpolate::computeWeightedValueAndMapping(const std::map<int, std::vector<std::pair<int,double> > >& interpolatingIndexValues, int transPos) |
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[1612] | 179 | TRY |
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[630] | 180 | { |
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[833] | 181 | TransformationIndexMap& transMap = this->transformationMapping_[transPos]; |
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| 182 | TransformationWeightMap& transWeight = this->transformationWeight_[transPos]; |
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[630] | 183 | std::map<int, std::vector<std::pair<int,double> > >::const_iterator itb = interpolatingIndexValues.begin(), it, |
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| 184 | ite = interpolatingIndexValues.end(); |
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[666] | 185 | int ibegin = axisDest_->begin.getValue(); |
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[630] | 186 | for (it = itb; it != ite; ++it) |
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| 187 | { |
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| 188 | int globalIndexDest = it->first; |
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| 189 | double localValue = axisDest_->value(globalIndexDest - ibegin); |
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| 190 | const std::vector<std::pair<int,double> >& interpVal = it->second; |
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| 191 | int interpSize = interpVal.size(); |
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[827] | 192 | transMap[globalIndexDest].resize(interpSize); |
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| 193 | transWeight[globalIndexDest].resize(interpSize); |
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[630] | 194 | for (int idx = 0; idx < interpSize; ++idx) |
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| 195 | { |
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| 196 | int index = interpVal[idx].first; |
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| 197 | double weight = 1.0; |
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| 198 | |
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| 199 | for (int k = 0; k < interpSize; ++k) |
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| 200 | { |
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| 201 | if (k == idx) continue; |
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| 202 | weight *= (localValue - interpVal[k].second); |
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| 203 | weight /= (interpVal[idx].second - interpVal[k].second); |
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| 204 | } |
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[827] | 205 | transMap[globalIndexDest][idx] = index; |
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| 206 | transWeight[globalIndexDest][idx] = weight; |
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| 207 | if (!transPosition_.empty()) |
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| 208 | { |
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| 209 | (this->transformationPosition_[transPos])[globalIndexDest] = transPosition_[transPos]; |
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| 210 | } |
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[630] | 211 | } |
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| 212 | } |
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[918] | 213 | if (!transPosition_.empty() && this->transformationPosition_[transPos].empty()) |
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| 214 | (this->transformationPosition_[transPos])[0] = transPosition_[transPos]; |
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| 215 | |
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[630] | 216 | } |
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[1612] | 217 | CATCH |
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[630] | 218 | |
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| 219 | /*! |
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| 220 | Each client retrieves all values of an axis |
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| 221 | \param [in/out] recvBuff buffer for receiving values (already allocated) |
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| 222 | \param [in/out] indexVec mapping between values and global index of axis |
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| 223 | */ |
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[827] | 224 | void CAxisAlgorithmInterpolate::retrieveAllAxisValue(const CArray<double,1>& axisValue, const CArray<bool,1>& axisMask, |
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| 225 | std::vector<double>& recvBuff, std::vector<int>& indexVec) |
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[1612] | 226 | TRY |
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[630] | 227 | { |
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| 228 | CContext* context = CContext::getCurrent(); |
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| 229 | CContextClient* client=context->client; |
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| 230 | int nbClient = client->clientSize; |
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| 231 | |
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[666] | 232 | int srcSize = axisSrc_->n_glo.getValue(); |
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[630] | 233 | int numValue = axisValue.numElements(); |
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| 234 | |
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| 235 | if (srcSize == numValue) // Only one client or axis not distributed |
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| 236 | { |
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| 237 | for (int idx = 0; idx < srcSize; ++idx) |
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| 238 | { |
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| 239 | if (axisMask(idx)) |
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| 240 | { |
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| 241 | recvBuff[idx] = axisValue(idx); |
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| 242 | indexVec[idx] = idx; |
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| 243 | } |
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[896] | 244 | else |
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| 245 | { |
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| 246 | recvBuff[idx] = NumTraits<double>::sfmax(); |
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| 247 | indexVec[idx] = -1; |
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| 248 | } |
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[630] | 249 | } |
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| 250 | |
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| 251 | } |
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| 252 | else // Axis distributed |
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| 253 | { |
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| 254 | double* sendValueBuff = new double [numValue]; |
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| 255 | int* sendIndexBuff = new int [numValue]; |
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| 256 | int* recvIndexBuff = new int [srcSize]; |
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| 257 | |
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[666] | 258 | int ibegin = axisSrc_->begin.getValue(); |
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[630] | 259 | for (int idx = 0; idx < numValue; ++idx) |
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| 260 | { |
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| 261 | if (axisMask(idx)) |
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| 262 | { |
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| 263 | sendValueBuff[idx] = axisValue(idx); |
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| 264 | sendIndexBuff[idx] = idx + ibegin; |
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| 265 | } |
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| 266 | else |
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| 267 | { |
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| 268 | sendValueBuff[idx] = NumTraits<double>::sfmax(); |
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| 269 | sendIndexBuff[idx] = -1; |
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| 270 | } |
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| 271 | } |
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| 272 | |
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| 273 | int* recvCount=new int[nbClient]; |
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| 274 | MPI_Allgather(&numValue,1,MPI_INT,recvCount,1,MPI_INT,client->intraComm); |
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| 275 | |
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| 276 | int* displ=new int[nbClient]; |
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| 277 | displ[0]=0 ; |
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| 278 | for(int n=1;n<nbClient;n++) displ[n]=displ[n-1]+recvCount[n-1]; |
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| 279 | |
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| 280 | // Each client have enough global info of axis |
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| 281 | MPI_Allgatherv(sendIndexBuff,numValue,MPI_INT,recvIndexBuff,recvCount,displ,MPI_INT,client->intraComm); |
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| 282 | MPI_Allgatherv(sendValueBuff,numValue,MPI_DOUBLE,&(recvBuff[0]),recvCount,displ,MPI_DOUBLE,client->intraComm); |
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| 283 | |
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| 284 | for (int idx = 0; idx < srcSize; ++idx) |
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| 285 | { |
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| 286 | indexVec[idx] = recvIndexBuff[idx]; |
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| 287 | } |
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| 288 | |
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| 289 | delete [] displ; |
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| 290 | delete [] recvCount; |
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| 291 | delete [] recvIndexBuff; |
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| 292 | delete [] sendIndexBuff; |
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| 293 | delete [] sendValueBuff; |
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| 294 | } |
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| 295 | } |
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[1612] | 296 | CATCH |
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[630] | 297 | |
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[827] | 298 | /*! |
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| 299 | Fill in axis value dynamically from a field whose grid is composed of a domain and an axis |
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| 300 | \param [in/out] vecAxisValue vector axis value filled in from input field |
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| 301 | */ |
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| 302 | void CAxisAlgorithmInterpolate::fillInAxisValue(std::vector<CArray<double,1> >& vecAxisValue, |
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| 303 | const std::vector<CArray<double,1>* >& dataAuxInputs) |
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[1612] | 304 | TRY |
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[827] | 305 | { |
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| 306 | if (coordinate_.empty()) |
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| 307 | { |
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| 308 | vecAxisValue.resize(1); |
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| 309 | vecAxisValue[0].resize(axisSrc_->value.numElements()); |
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| 310 | vecAxisValue[0] = axisSrc_->value; |
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| 311 | this->transformationMapping_.resize(1); |
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| 312 | this->transformationWeight_.resize(1); |
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| 313 | } |
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| 314 | else |
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| 315 | { |
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| 316 | CField* field = CField::get(coordinate_); |
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| 317 | CGrid* grid = field->grid; |
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| 318 | |
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| 319 | std::vector<CDomain*> domListP = grid->getDomains(); |
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| 320 | std::vector<CAxis*> axisListP = grid->getAxis(); |
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| 321 | if (domListP.empty() || axisListP.empty() || (1 < domListP.size()) || (1 < axisListP.size())) |
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| 322 | ERROR("CAxisAlgorithmInterpolate::fillInAxisValue(std::vector<CArray<double,1> >& vecAxisValue)", |
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| 323 | << "XIOS only supports dynamic interpolation with coordinate (field) associated with grid composed of a domain and an axis" |
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| 324 | << "Coordinate (field) id = " <<field->getId() << std::endl |
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| 325 | << "Associated grid id = " << grid->getId()); |
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| 326 | |
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| 327 | CDomain* dom = domListP[0]; |
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| 328 | size_t vecAxisValueSize = dom->i_index.numElements(); |
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[913] | 329 | size_t vecAxisValueSizeWithMask = 0; |
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| 330 | for (size_t idx = 0; idx < vecAxisValueSize; ++idx) |
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| 331 | { |
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[1311] | 332 | if (dom->domainMask(idx)) ++vecAxisValueSizeWithMask; |
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[913] | 333 | } |
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| 334 | |
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[862] | 335 | int niGlobDom = dom->ni_glo.getValue(); |
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[913] | 336 | vecAxisValue.resize(vecAxisValueSizeWithMask); |
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[827] | 337 | if (transPosition_.empty()) |
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| 338 | { |
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[913] | 339 | size_t indexMask = 0; |
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| 340 | transPosition_.resize(vecAxisValueSizeWithMask); |
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[827] | 341 | for (size_t idx = 0; idx < vecAxisValueSize; ++idx) |
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| 342 | { |
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[1311] | 343 | if (dom->domainMask(idx)) |
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[913] | 344 | { |
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| 345 | transPosition_[indexMask].resize(1); |
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| 346 | transPosition_[indexMask][0] = (dom->i_index)(idx) + niGlobDom * (dom->j_index)(idx); |
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| 347 | ++indexMask; |
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| 348 | } |
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| 349 | |
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[827] | 350 | } |
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| 351 | } |
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[913] | 352 | this->transformationMapping_.resize(vecAxisValueSizeWithMask); |
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| 353 | this->transformationWeight_.resize(vecAxisValueSizeWithMask); |
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| 354 | this->transformationPosition_.resize(vecAxisValueSizeWithMask); |
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[827] | 355 | |
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[831] | 356 | const CDistributionClient::GlobalLocalDataMap& globalLocalIndexSendToServer = grid->getDistributionClient()->getGlobalLocalDataSendToServer(); |
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| 357 | CDistributionClient::GlobalLocalDataMap::const_iterator itIndex, iteIndex = globalLocalIndexSendToServer.end(); |
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[827] | 358 | size_t axisSrcSize = axisSrc_->index.numElements(); |
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| 359 | std::vector<int> globalDimension = grid->getGlobalDimension(); |
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[831] | 360 | |
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[913] | 361 | size_t indexMask = 0; |
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[827] | 362 | for (size_t idx = 0; idx < vecAxisValueSize; ++idx) |
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| 363 | { |
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[1311] | 364 | if (dom->domainMask(idx)) |
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[827] | 365 | { |
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[913] | 366 | size_t axisValueSize = 0; |
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| 367 | for (size_t jdx = 0; jdx < axisSrcSize; ++jdx) |
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[827] | 368 | { |
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[913] | 369 | size_t globalIndex = ((dom->i_index)(idx) + (dom->j_index)(idx)*globalDimension[0]) + (axisSrc_->index)(jdx)*globalDimension[0]*globalDimension[1]; |
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| 370 | if (iteIndex != globalLocalIndexSendToServer.find(globalIndex)) |
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| 371 | { |
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| 372 | ++axisValueSize; |
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| 373 | } |
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[827] | 374 | } |
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| 375 | |
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[913] | 376 | vecAxisValue[indexMask].resize(axisValueSize); |
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| 377 | axisValueSize = 0; |
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| 378 | for (size_t jdx = 0; jdx < axisSrcSize; ++jdx) |
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[827] | 379 | { |
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[913] | 380 | size_t globalIndex = ((dom->i_index)(idx) + (dom->j_index)(idx)*globalDimension[0]) + (axisSrc_->index)(jdx)*globalDimension[0]*globalDimension[1]; |
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| 381 | itIndex = globalLocalIndexSendToServer.find(globalIndex); |
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| 382 | if (iteIndex != itIndex) |
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| 383 | { |
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| 384 | vecAxisValue[indexMask](axisValueSize) = (*dataAuxInputs[0])(itIndex->second); |
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| 385 | ++axisValueSize; |
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| 386 | } |
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[827] | 387 | } |
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[913] | 388 | ++indexMask; |
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[827] | 389 | } |
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| 390 | } |
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| 391 | } |
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[630] | 392 | } |
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[1612] | 393 | CATCH |
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[827] | 394 | |
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| 395 | } |
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