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source: XIOS/dev/dev_ym/XIOS_COUPLING/src/io/nc4_data_output.cpp @ 1882

Last change on this file since 1882 was 1882, checked in by ymipsl, 4 years ago

Xios coupling branch
Refactor and simplify file writer filter management on server side.

YM

Property copyright set to
Software name : XIOS (Xml I/O Server)
http://forge.ipsl.jussieu.fr/ioserver
Creation date : January 2009
Licence : CeCCIL version2
see license file in root directory : Licence_CeCILL_V2-en.txt
or http://www.cecill.info/licences/Licence_CeCILL_V2-en.html
Holder : CEA/LSCE (Laboratoire des Sciences du CLimat et de l'Environnement)
CNRS/IPSL (Institut Pierre Simon Laplace)
Project Manager : Yann Meurdesoif
yann.meurdesoif@cea.fr
Property svn:executable set to *

File size: 131.6 KB

Rev	Line
[219]	1	#include "nc4_data_output.hpp"
	2
[352]	3	#include "attribute_template.hpp"
	4	#include "group_template.hpp"
[219]	5
	6	#include "file.hpp"
	7	#include "calendar.hpp"
[278]	8	#include "context.hpp"
[300]	9	#include "context_server.hpp"
[498]	10	#include "netCdfException.hpp"
	11	#include "exception.hpp"
[1158]	12	#include "timer.hpp"
	13	#include "uuid.hpp"
[335]	14	namespace xios
[219]	15	{
[878]	16	/// ////////////////////// Dfinitions ////////////////////// ///
[219]	17	CNc4DataOutput::CNc4DataOutput
[1158]	18	(CFile* file, const StdString & filename, bool exist)
[219]	19	: SuperClass()
	20	, SuperClassWriter(filename, exist)
	21	, filename(filename)
[1158]	22	, file(file),hasTimeInstant(false),hasTimeCentered(false), timeCounterType(none)
[219]	23	{
[1158]	24	SuperClass::type = MULTI_FILE;
[1456]	25	compressionLevel= file->compression_level.isEmpty() ? 0 :file->compression_level ;
[219]	26	}
	27
	28	CNc4DataOutput::CNc4DataOutput
[1158]	29	(CFile* file, const StdString & filename, bool exist, bool useClassicFormat, bool useCFConvention,
[1639]	30	MPI_Comm comm_file, bool multifile, bool isCollective, const StdString& timeCounterName)
[219]	31	: SuperClass()
[878]	32	, SuperClassWriter(filename, exist, useClassicFormat, useCFConvention, &comm_file, multifile, timeCounterName)
[379]	33	, comm_file(comm_file)
[219]	34	, filename(filename)
[335]	35	, isCollective(isCollective)
[1158]	36	, file(file),hasTimeInstant(false),hasTimeCentered(false), timeCounterType(none)
[219]	37	{
[1158]	38	SuperClass::type = (multifile) ? MULTI_FILE : ONE_FILE;
[1459]	39	if (file==NULL) compressionLevel = 0 ;
	40	else compressionLevel= file->compression_level.isEmpty() ? 0 :file->compression_level ;
[219]	41	}
	42
	43	CNc4DataOutput::~CNc4DataOutput(void)
[879]	44	{ /* Ne rien faire de plus */ }
[219]	45
	46	///--------------------------------------------------------------
	47
	48	const StdString & CNc4DataOutput::getFileName(void) const
	49	{
	50	return (this->filename);
	51	}
	52
	53	//---------------------------------------------------------------
	54
[347]	55	void CNc4DataOutput::writeDomain_(CDomain* domain)
[1622]	56	TRY
[219]	57	{
[1391]	58	StdString lonName,latName ;
	59
[1129]	60	domain->computeWrittenIndex();
[1249]	61	domain->computeWrittenCompressedIndex(comm_file);
	62
[881]	63	if (domain->type == CDomain::type_attr::unstructured)
	64	{
	65	if (SuperClassWriter::useCFConvention)
	66	writeUnstructuredDomain(domain) ;
	67	else
	68	writeUnstructuredDomainUgrid(domain) ;
	69	return ;
	70	}
[488]	71
[347]	72	CContext* context = CContext::getCurrent() ;
[488]	73
[219]	74	if (domain->IsWritten(this->filename)) return;
	75	domain->checkAttributes();
[488]	76
	77	if (domain->isEmpty())
[881]	78	if (SuperClass::type==MULTI_FILE) return;
[219]	79
	80	std::vector<StdString> dim0, dim1;
[772]	81	StdString domid = domain->getDomainOutputName();
[318]	82	StdString appendDomid = (singleDomain) ? "" : "_"+domid ;
[706]	83	if (isWrittenDomain(domid)) return ;
[774]	84	else setWrittenDomain(domid);
[1132]	85
	86	int nvertex = (domain->nvertex.isEmpty()) ? 0 : domain->nvertex;
[449]	87
[488]	88
[1158]	89	StdString dimXid, dimYid ;
	90
	91	nc_type typePrec ;
	92	if (domain->prec.isEmpty()) typePrec = NC_FLOAT ;
	93	else if (domain->prec==4) typePrec = NC_FLOAT ;
	94	else if (domain->prec==8) typePrec = NC_DOUBLE ;
	95
[664]	96	bool isRegularDomain = (domain->type == CDomain::type_attr::rectilinear);
[449]	97	switch (domain->type)
[433]	98	{
[449]	99	case CDomain::type_attr::curvilinear :
[1391]	100
	101	if (domain->lon_name.isEmpty()) lonName = "nav_lon";
	102	else lonName = domain->lon_name;
	103
	104	if (domain->lat_name.isEmpty()) latName = "nav_lat";
	105	else latName = domain->lat_name;
	106
[1430]	107	if (domain->dim_i_name.isEmpty()) dimXid=StdString("x").append(appendDomid);
	108	else dimXid=domain->dim_i_name.getValue() + appendDomid;
	109
	110	if (domain->dim_j_name.isEmpty()) dimYid=StdString("y").append(appendDomid);
	111	else dimYid=domain->dim_j_name.getValue() + appendDomid;
	112
[449]	113	break ;
[1391]	114
[664]	115	case CDomain::type_attr::rectilinear :
[1391]	116
[1430]	117	if (domain->lon_name.isEmpty())
	118	{
	119	if (domain->dim_i_name.isEmpty())
	120	lonName = "lon";
	121	else
	122	lonName = domain->dim_i_name.getValue();
	123	}
[1391]	124	else lonName = domain->lon_name;
	125
[1430]	126	if (domain->lat_name.isEmpty())
	127	{
	128	if (domain->dim_j_name.isEmpty())
	129	latName = "lat";
	130	else
	131	latName = domain->dim_j_name.getValue();
	132	}
[1391]	133	else latName = domain->lat_name;
	134
[1430]	135	if (domain->dim_i_name.isEmpty()) dimXid = lonName+appendDomid;
	136	else dimXid = domain->dim_i_name.getValue()+appendDomid;
	137
	138	if (domain->dim_j_name.isEmpty()) dimYid = latName+appendDomid;
	139	else dimYid = domain->dim_j_name.getValue()+appendDomid;
[449]	140	break;
[488]	141	}
	142
[617]	143	StdString dimVertId = StdString("nvertex").append(appendDomid);
	144
[449]	145	string lonid,latid,bounds_lonid,bounds_latid ;
[611]	146	string areaId = "area" + appendDomid;
[219]	147
[1637]	148	CArray<int, 1>& indexToWrite = domain->localIndexToWriteOnServer;
[1129]	149	int nbWritten = indexToWrite.numElements();
	150	CArray<double,1> writtenLat, writtenLon;
	151	CArray<double,2> writtenBndsLat, writtenBndsLon;
	152	CArray<double,1> writtenArea;
	153
	154	if (domain->hasLonLat)
	155	{
	156	writtenLat.resize(nbWritten);
	157	writtenLon.resize(nbWritten);
	158	for (int idx = 0; idx < nbWritten; ++idx)
	159	{
[1637]	160	if (indexToWrite(idx) < 0)
	161	{
	162	writtenLat(idx) = -1.; // hole
	163	writtenLon(idx) = -1.;
	164	}
	165	else
	166	{
	167	writtenLat(idx) = domain->latvalue(indexToWrite(idx));
	168	writtenLon(idx) = domain->lonvalue(indexToWrite(idx));
	169	}
[1129]	170	}
	171
	172	if (domain->hasBounds)
	173	{
	174	int nvertex = domain->nvertex, idx;
	175	writtenBndsLat.resize(nvertex, nbWritten);
	176	writtenBndsLon.resize(nvertex, nbWritten);
	177	CArray<double,2>& boundslat = domain->bounds_latvalue;
	178	CArray<double,2>& boundslon = domain->bounds_lonvalue;
	179	for (idx = 0; idx < nbWritten; ++idx)
	180	for (int nv = 0; nv < nvertex; ++nv)
	181	{
[1637]	182	if (indexToWrite(idx) < 0)
	183	{
	184	writtenBndsLat(nv, idx) = -1.; // hole
	185	writtenBndsLon(nv, idx) = -1.;
	186	}
	187	else
	188	{
[1390]	189	writtenBndsLat(nv, idx) = boundslat(nv, int(indexToWrite(idx)));
	190	writtenBndsLon(nv, idx) = boundslon(nv, int(indexToWrite(idx)));
[1637]	191	}
[1129]	192	}
	193	}
	194	}
	195
	196	if (domain->hasArea)
	197	{
	198	writtenArea.resize(nbWritten);
	199	for (int idx = 0; idx < nbWritten; ++idx)
	200	{
[1637]	201	if (indexToWrite(idx) < 0)
	202	writtenArea(idx) = -1.;
[1390]	203	else
[1637]	204	writtenArea(idx) = domain->areavalue(indexToWrite(idx));
[1129]	205	}
	206	}
	207
[498]	208	try
[219]	209	{
[498]	210	switch (SuperClass::type)
	211	{
	212	case (MULTI_FILE) :
	213	{
	214	switch (domain->type)
	215	{
	216	case CDomain::type_attr::curvilinear :
	217	dim0.push_back(dimYid); dim0.push_back(dimXid);
[1415]	218	lonid = lonName+appendDomid;
	219	latid = latName+appendDomid;
[498]	220	break ;
[664]	221	case CDomain::type_attr::rectilinear :
[1415]	222	lonid = lonName+appendDomid;
	223	latid = latName+appendDomid;
[498]	224	dim0.push_back(dimYid);
	225	dim1.push_back(dimXid);
	226	break;
	227	}
[1430]	228	if (!domain->bounds_lon_name.isEmpty()) bounds_lonid = domain->bounds_lon_name;
	229	else bounds_lonid = "bounds_"+lonName+appendDomid;
	230	if (!domain->bounds_lat_name.isEmpty()) bounds_latid = domain->bounds_lat_name;
	231	else bounds_latid = "bounds_"+latName+appendDomid;
[488]	232
[1553]	233	SuperClassWriter::addDimension(dimXid, domain->ni);
	234	SuperClassWriter::addDimension(dimYid, domain->nj);
[488]	235
[617]	236	if (domain->hasBounds)
	237	SuperClassWriter::addDimension(dimVertId, domain->nvertex);
	238
[1853]	239	if (context->intraCommSize_ > 1)
[498]	240	{
[1553]	241	this->writeLocalAttributes(domain->ibegin,
	242	domain->ni,
	243	domain->jbegin,
	244	domain->nj,
[616]	245	appendDomid);
[488]	246
[628]	247	if (singleDomain)
	248	this->writeLocalAttributes_IOIPSL(dimXid, dimYid,
[1553]	249	domain->ibegin,
	250	domain->ni,
	251	domain->jbegin,
	252	domain->nj,
[628]	253	domain->ni_glo,domain->nj_glo,
[1853]	254	context->intraCommRank_,context->intraCommSize_);
[449]	255	}
[488]	256
[665]	257	if (domain->hasLonLat)
[498]	258	{
[665]	259	switch (domain->type)
	260	{
	261	case CDomain::type_attr::curvilinear :
[1456]	262	SuperClassWriter::addVariable(latid, typePrec, dim0, compressionLevel);
	263	SuperClassWriter::addVariable(lonid, typePrec, dim0, compressionLevel);
[665]	264	break ;
	265	case CDomain::type_attr::rectilinear :
[1456]	266	SuperClassWriter::addVariable(latid, typePrec, dim0, compressionLevel);
	267	SuperClassWriter::addVariable(lonid, typePrec, dim1, compressionLevel);
[665]	268	break ;
	269	}
[488]	270
[665]	271	this->writeAxisAttributes(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid);
	272	this->writeAxisAttributes(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid);
[219]	273
[665]	274	if (domain->hasBounds)
	275	{
	276	SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid);
	277	SuperClassWriter::addAttribute("bounds", bounds_latid, &latid);
[617]	278
[665]	279	dim0.clear();
	280	dim0.push_back(dimYid);
	281	dim0.push_back(dimXid);
	282	dim0.push_back(dimVertId);
[1456]	283	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0, compressionLevel);
	284	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0, compressionLevel);
[665]	285	}
[617]	286	}
	287
[498]	288	dim0.clear();
[616]	289	dim0.push_back(dimYid);
[498]	290	dim0.push_back(dimXid);
[219]	291
	292
[1853]	293	// supress mask if (context->intraCommSize_ > 1)
[498]	294	// supress mask {
	295	// supress mask SuperClassWriter::addVariable(maskid, NC_INT, dim0);
	296	// supress mask
	297	// supress mask this->writeMaskAttributes(maskid,
	298	// supress mask domain->data_dim.getValue()/*,
	299	// supress mask domain->data_ni.getValue(),
	300	// supress mask domain->data_nj.getValue(),
	301	// supress mask domain->data_ibegin.getValue(),
	302	// supress mask domain->data_jbegin.getValue()*/);
	303	// supress mask }
[488]	304
[498]	305	//SuperClassWriter::setDefaultValue(maskid, &dvm);
[219]	306
[611]	307	if (domain->hasArea)
	308	{
[1456]	309	SuperClassWriter::addVariable(areaId, typePrec, dim0, compressionLevel);
[614]	310	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
[611]	311	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
	312	}
	313
[498]	314	SuperClassWriter::definition_end();
[449]	315
[665]	316	if (domain->hasLonLat)
[498]	317	{
[665]	318	switch (domain->type)
	319	{
[1129]	320	case CDomain::type_attr::curvilinear :
	321	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0);
	322	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0);
[665]	323	break;
	324	case CDomain::type_attr::rectilinear :
[1553]	325	CArray<double,1> lat = writtenLat(Range(fromStart,toEnd,domain->ni)) ;
[665]	326	SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0);
[1553]	327	CArray<double,1> lon = writtenLon(Range(0,domain->ni-1)) ;
[665]	328	SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0);
	329	break;
	330	}
[611]	331
[665]	332	if (domain->hasBounds)
	333	{
[1129]	334	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0);
	335	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0);
[665]	336	}
[617]	337	}
	338
[611]	339	if (domain->hasArea)
[1129]	340	{
[1132]	341	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0);
[1129]	342	}
	343
[498]	344	SuperClassWriter::definition_start();
[219]	345
[498]	346	break;
	347	}
	348	case (ONE_FILE) :
	349	{
[1553]	350	SuperClassWriter::addDimension(dimXid, domain->ni_glo);
	351	SuperClassWriter::addDimension(dimYid, domain->nj_glo);
[286]	352
[617]	353	if (domain->hasBounds)
	354	SuperClassWriter::addDimension(dimVertId, domain->nvertex);
	355
[665]	356	if (domain->hasLonLat)
[498]	357	{
[665]	358	switch (domain->type)
	359	{
	360	case CDomain::type_attr::curvilinear :
	361	dim0.push_back(dimYid); dim0.push_back(dimXid);
[1415]	362	lonid = lonName+appendDomid;
	363	latid = latName+appendDomid;
[1456]	364	SuperClassWriter::addVariable(latid, typePrec, dim0, compressionLevel);
	365	SuperClassWriter::addVariable(lonid, typePrec, dim0, compressionLevel);
[665]	366	break;
[449]	367
[665]	368	case CDomain::type_attr::rectilinear :
	369	dim0.push_back(dimYid);
	370	dim1.push_back(dimXid);
[1415]	371	lonid = lonName+appendDomid;
	372	latid = latName+appendDomid;
[1456]	373	SuperClassWriter::addVariable(latid, typePrec, dim0, compressionLevel);
	374	SuperClassWriter::addVariable(lonid, typePrec, dim1, compressionLevel);
[665]	375	break;
	376	}
[1430]	377	if (!domain->bounds_lon_name.isEmpty()) bounds_lonid = domain->bounds_lon_name;
	378	else bounds_lonid = "bounds_"+lonName+appendDomid;
	379	if (!domain->bounds_lat_name.isEmpty()) bounds_latid = domain->bounds_lat_name;
	380	else bounds_latid = "bounds_"+latName+appendDomid;
[665]	381
	382	this->writeAxisAttributes
	383	(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid);
	384	this->writeAxisAttributes
	385	(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid);
	386
	387	if (domain->hasBounds)
	388	{
	389	SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid);
	390	SuperClassWriter::addAttribute("bounds", bounds_latid, &latid);
	391
	392	dim0.clear();
[498]	393	dim0.push_back(dimYid);
[665]	394	dim0.push_back(dimXid);
	395	dim0.push_back(dimVertId);
[1456]	396	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0, compressionLevel);
	397	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0, compressionLevel);
[665]	398	}
[498]	399	}
[611]	400
	401	if (domain->hasArea)
	402	{
	403	dim0.clear();
	404	dim0.push_back(dimYid); dim0.push_back(dimXid);
[1456]	405	SuperClassWriter::addVariable(areaId, typePrec, dim0, compressionLevel);
[614]	406	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
[611]	407	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
	408	dim0.clear();
	409	}
	410
	411	SuperClassWriter::definition_end();
[286]	412
[498]	413	switch (domain->type)
[384]	414	{
[498]	415	case CDomain::type_attr::curvilinear :
[449]	416	{
[498]	417	std::vector<StdSize> start(2) ;
	418	std::vector<StdSize> count(2) ;
[1637]	419	// Comment out: it is not working for a hole
	420	// if (domain->isEmpty())
	421	// {
	422	// start[0]=0 ; start[1]=0 ;
	423	// count[0]=0 ; count[1]=0 ;
	424	// }
	425	// else
[498]	426	{
[1553]	427	start[1]=domain->ibegin;
	428	start[0]=domain->jbegin;
	429	count[1]=domain->ni ; count[0]=domain->nj ;
[498]	430	}
[488]	431
[665]	432	if (domain->hasLonLat)
	433	{
[1129]	434	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count);
	435	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count);
[665]	436	}
[498]	437	break;
	438	}
[664]	439	case CDomain::type_attr::rectilinear :
[449]	440	{
[665]	441	if (domain->hasLonLat)
[498]	442	{
[665]	443	std::vector<StdSize> start(1) ;
	444	std::vector<StdSize> count(1) ;
	445	if (domain->isEmpty())
	446	{
	447	start[0]=0 ;
	448	count[0]=0 ;
[1129]	449	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count);
	450	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count);
[665]	451	}
	452	else
[1129]	453	{
[1553]	454	start[0]=domain->jbegin;
	455	count[0]=domain->nj;
	456	CArray<double,1> lat = writtenLat(Range(fromStart,toEnd,domain->ni));
[665]	457	SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0,&start,&count);
	458
[1553]	459	start[0]=domain->ibegin;
	460	count[0]=domain->ni;
	461	CArray<double,1> lon = writtenLon(Range(0,domain->ni-1));
[665]	462	SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0,&start,&count);
	463	}
[498]	464	}
	465	break;
[449]	466	}
[384]	467	}
[611]	468
[617]	469	if (domain->hasBounds)
	470	{
	471	std::vector<StdSize> start(3);
	472	std::vector<StdSize> count(3);
	473	if (domain->isEmpty())
	474	{
	475	start[2] = start[1] = start[0] = 0;
	476	count[2] = count[1] = count[0] = 0;
	477	}
	478	else
	479	{
	480	start[2] = 0;
[1553]	481	start[1] = domain->ibegin;
	482	start[0] = domain->jbegin;
[1099]	483	count[2] = domain->nvertex;
[1553]	484	count[1] = domain->ni;
	485	count[0] = domain->nj;
[617]	486	}
[1143]	487
[1129]	488	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0, &start, &count);
	489	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0, &start, &count);
[617]	490	}
	491
[611]	492	if (domain->hasArea)
	493	{
	494	std::vector<StdSize> start(2);
	495	std::vector<StdSize> count(2);
	496
	497	if (domain->isEmpty())
	498	{
	499	start[0] = 0; start[1] = 0;
	500	count[0] = 0; count[1] = 0;
	501	}
	502	else
	503	{
[1553]	504	start[1] = domain->ibegin;
	505	start[0] = domain->jbegin;
	506	count[1] = domain->ni;
	507	count[0] = domain->nj;
[611]	508	}
[1143]	509
[1129]	510	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0, &start, &count);
[611]	511	}
	512
[498]	513	SuperClassWriter::definition_start();
	514	break;
	515	}
	516	default :
	517	ERROR("CNc4DataOutput::writeDomain(domain)",
	518	<< "[ type = " << SuperClass::type << "]"
	519	<< " not implemented yet !");
	520	}
[449]	521	}
[498]	522	catch (CNetCdfException& e)
	523	{
	524	StdString msg("On writing the domain : ");
	525	msg.append(domid); msg.append("\n");
	526	msg.append("In the context : ");
	527	msg.append(context->getId()); msg.append("\n");
	528	msg.append(e.what());
	529	ERROR("CNc4DataOutput::writeDomain_(CDomain* domain)", << msg);
	530	}
	531
[449]	532	domain->addRelFile(this->filename);
	533	}
[1622]	534	CATCH
[449]	535
[879]	536	//--------------------------------------------------------------
[878]	537
[879]	538	void CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain)
	539	{
	540	CContext* context = CContext::getCurrent() ;
[878]	541
[879]	542	if (domain->IsWritten(this->filename)) return;
[1494]	543
	544	StdString domid = domain->getDomainOutputName();
	545
	546	// The first domain for the same mesh that will be written is that with the highest value of nvertex.
	547	// Thus the entire mesh connectivity will be generated at once.
	548	if (isWrittenDomain(domid)) return ;
	549	else setWrittenDomain(domid);
	550
[879]	551	domain->checkAttributes();
	552	if (domain->isEmpty())
	553	if (SuperClass::type==MULTI_FILE) return ;
[878]	554
[1158]	555	nc_type typePrec ;
	556	if (domain->prec.isEmpty()) typePrec = NC_FLOAT ;
	557	else if (domain->prec==4) typePrec = NC_FLOAT ;
	558	else if (domain->prec==8) typePrec = NC_DOUBLE ;
	559
[879]	560	std::vector<StdString> dim0;
	561	StdString domainName = domain->name;
[924]	562	domain->assignMesh(domainName, domain->nvertex);
[1853]	563	domain->mesh->createMeshEpsilon(context->intraComm_, domain->lonvalue, domain->latvalue, domain->bounds_lonvalue, domain->bounds_latvalue);
[878]	564
[879]	565	StdString node_x = domainName + "_node_x";
	566	StdString node_y = domainName + "_node_y";
[878]	567
[879]	568	StdString edge_x = domainName + "_edge_x";
	569	StdString edge_y = domainName + "_edge_y";
	570	StdString edge_nodes = domainName + "_edge_nodes";
[878]	571
[879]	572	StdString face_x = domainName + "_face_x";
	573	StdString face_y = domainName + "_face_y";
	574	StdString face_nodes = domainName + "_face_nodes";
[902]	575	StdString face_edges = domainName + "_face_edges";
	576	StdString edge_faces = domainName + "_edge_face_links";
	577	StdString face_faces = domainName + "_face_links";
[878]	578
[879]	579	StdString dimNode = "n" + domainName + "_node";
	580	StdString dimEdge = "n" + domainName + "_edge";
	581	StdString dimFace = "n" + domainName + "_face";
	582	StdString dimVertex = "n" + domainName + "_vertex";
	583	StdString dimTwo = "Two";
[878]	584
[879]	585	if (!SuperClassWriter::dimExist(dimTwo)) SuperClassWriter::addDimension(dimTwo, 2);
[1494]	586	dim0.clear();
	587	SuperClassWriter::addVariable(domainName, NC_INT, dim0, compressionLevel);
	588	SuperClassWriter::addAttribute("cf_role", StdString("mesh_topology"), &domainName);
	589	SuperClassWriter::addAttribute("long_name", StdString("Topology data of 2D unstructured mesh"), &domainName);
	590	SuperClassWriter::addAttribute("topology_dimension", 2, &domainName);
	591	SuperClassWriter::addAttribute("node_coordinates", node_x + " " + node_y, &domainName);
[878]	592
[879]	593	try
	594	{
	595	switch (SuperClass::type)
	596	{
	597	case (ONE_FILE) :
	598	{
	599	// Adding nodes
	600	if (domain->nvertex == 1)
	601	{
	602	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
	603	{
[902]	604	SuperClassWriter::addDimension(dimNode, domain->ni_glo);
[879]	605	dim0.clear();
	606	dim0.push_back(dimNode);
[1456]	607	SuperClassWriter::addVariable(node_x, typePrec, dim0, compressionLevel);
[879]	608	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
[924]	609	SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x);
[879]	610	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
[1456]	611	SuperClassWriter::addVariable(node_y, typePrec, dim0, compressionLevel);
[879]	612	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
[924]	613	SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y);
[879]	614	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
	615	}
	616	} // domain->nvertex == 1
[878]	617
[879]	618	// Adding edges and nodes, if nodes have not been defined previously
	619	if (domain->nvertex == 2)
	620	{
	621	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
	622	{
[924]	623	SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo);
[879]	624	dim0.clear();
	625	dim0.push_back(dimNode);
[1456]	626	SuperClassWriter::addVariable(node_x, typePrec, dim0, compressionLevel);
[879]	627	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
[924]	628	SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x);
[879]	629	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
[1456]	630	SuperClassWriter::addVariable(node_y, typePrec, dim0, compressionLevel);
[879]	631	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
[924]	632	SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y);
[879]	633	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
	634	}
[924]	635	SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName);
	636	SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName);
	637	SuperClassWriter::addDimension(dimEdge, domain->ni_glo);
	638	dim0.clear();
	639	dim0.push_back(dimEdge);
[1456]	640	SuperClassWriter::addVariable(edge_x, typePrec, dim0, compressionLevel);
[924]	641	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x);
	642	SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x);
	643	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x);
[1456]	644	SuperClassWriter::addVariable(edge_y, typePrec, dim0, compressionLevel);
[924]	645	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y);
	646	SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y);
	647	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y);
	648	dim0.clear();
	649	dim0.push_back(dimEdge);
	650	dim0.push_back(dimTwo);
[1456]	651	SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0, compressionLevel);
[924]	652	SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes);
	653	SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes);
	654	SuperClassWriter::addAttribute("start_index", 0, &edge_nodes);
[879]	655	} // domain->nvertex == 2
[878]	656
[879]	657	// Adding faces, edges, and nodes, if edges and nodes have not been defined previously
	658	if (domain->nvertex > 2)
	659	{
	660	// Nodes
	661	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
	662	{
[924]	663	SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo);
[879]	664	dim0.clear();
	665	dim0.push_back(dimNode);
[1456]	666	SuperClassWriter::addVariable(node_x, typePrec, dim0, compressionLevel);
[879]	667	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
[924]	668	SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x);
[879]	669	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
[1456]	670	SuperClassWriter::addVariable(node_y, typePrec, dim0, compressionLevel);
[879]	671	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
[924]	672	SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y);
[879]	673	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
	674	}
	675	if (!SuperClassWriter::varExist(edge_x) \|\| !SuperClassWriter::varExist(edge_y))
	676	{
	677	SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName);
	678	SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName);
[924]	679	SuperClassWriter::addDimension(dimEdge, domain->mesh->nbEdgesGlo);
[879]	680	dim0.clear();
	681	dim0.push_back(dimEdge);
[1456]	682	SuperClassWriter::addVariable(edge_x, typePrec, dim0, compressionLevel);
[879]	683	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x);
[924]	684	SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x);
[879]	685	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x);
[1456]	686	SuperClassWriter::addVariable(edge_y, typePrec, dim0, compressionLevel);
[879]	687	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y);
[924]	688	SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y);
[879]	689	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y);
	690	dim0.clear();
	691	dim0.push_back(dimEdge);
	692	dim0.push_back(dimTwo);
[1456]	693	SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0, compressionLevel);
[879]	694	SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes);
	695	SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes);
	696	SuperClassWriter::addAttribute("start_index", 0, &edge_nodes);
	697	}
[924]	698	SuperClassWriter::addAttribute("face_coordinates", face_x + " " + face_y, &domainName);
	699	SuperClassWriter::addAttribute("face_node_connectivity", face_nodes, &domainName);
	700	SuperClassWriter::addDimension(dimFace, domain->ni_glo);
	701	SuperClassWriter::addDimension(dimVertex, domain->nvertex);
	702	dim0.clear();
	703	dim0.push_back(dimFace);
[1456]	704	SuperClassWriter::addVariable(face_x, typePrec, dim0, compressionLevel);
[924]	705	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &face_x);
	706	SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh faces."), &face_x);
	707	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &face_x);
[1456]	708	SuperClassWriter::addVariable(face_y, typePrec, dim0, compressionLevel);
[924]	709	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &face_y);
	710	SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh faces."), &face_y);
	711	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &face_y);
	712	dim0.clear();
	713	dim0.push_back(dimFace);
	714	dim0.push_back(dimVertex);
[1456]	715	SuperClassWriter::addVariable(face_nodes, NC_INT, dim0, compressionLevel);
[924]	716	SuperClassWriter::addAttribute("cf_role", StdString("face_node_connectivity"), &face_nodes);
	717	SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its corner nodes."), &face_nodes);
	718	SuperClassWriter::addAttribute("start_index", 0, &face_nodes);
	719	dim0.clear();
	720	dim0.push_back(dimFace);
	721	dim0.push_back(dimVertex);
[1456]	722	SuperClassWriter::addVariable(face_edges, NC_INT, dim0, compressionLevel);
[924]	723	SuperClassWriter::addAttribute("cf_role", StdString("face_edge_connectivity"), &face_edges);
	724	SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its edges."), &face_edges);
	725	SuperClassWriter::addAttribute("start_index", 0, &face_edges);
[929]	726	SuperClassWriter::addAttribute("_FillValue", 999999, &face_edges);
[924]	727	dim0.clear();
	728	dim0.push_back(dimEdge);
	729	dim0.push_back(dimTwo);
[1456]	730	SuperClassWriter::addVariable(edge_faces, NC_INT, dim0, compressionLevel);
[924]	731	SuperClassWriter::addAttribute("cf_role", StdString("edge_face connectivity"), &edge_faces);
	732	SuperClassWriter::addAttribute("long_name", StdString("neighbor faces for edges"), &edge_faces);
	733	SuperClassWriter::addAttribute("start_index", 0, &edge_faces);
	734	SuperClassWriter::addAttribute("_FillValue", -999, &edge_faces);
	735	SuperClassWriter::addAttribute("comment", StdString("missing neighbor faces are indicated using _FillValue"), &edge_faces);
	736	dim0.clear();
	737	dim0.push_back(dimFace);
	738	dim0.push_back(dimVertex);
[1456]	739	SuperClassWriter::addVariable(face_faces, NC_INT, dim0, compressionLevel);
[924]	740	SuperClassWriter::addAttribute("cf_role", StdString("face_face connectivity"), &face_faces);
	741	SuperClassWriter::addAttribute("long_name", StdString("Indicates which other faces neighbor each face"), &face_faces);
	742	SuperClassWriter::addAttribute("start_index", 0, &face_faces);
[929]	743	SuperClassWriter::addAttribute("_FillValue", 999999, &face_faces);
[924]	744	SuperClassWriter::addAttribute("flag_values", -1, &face_faces);
	745	SuperClassWriter::addAttribute("flag_meanings", StdString("out_of_mesh"), &face_faces);
[879]	746	} // domain->nvertex > 2
[878]	747
[879]	748	SuperClassWriter::definition_end();
[878]	749
[924]	750	std::vector<StdSize> startEdges(1) ;
	751	std::vector<StdSize> countEdges(1) ;
	752	std::vector<StdSize> startNodes(1) ;
	753	std::vector<StdSize> countNodes(1) ;
	754	std::vector<StdSize> startFaces(1) ;
	755	std::vector<StdSize> countFaces(1) ;
	756	std::vector<StdSize> startEdgeNodes(2) ;
	757	std::vector<StdSize> countEdgeNodes(2) ;
	758	std::vector<StdSize> startEdgeFaces(2) ;
	759	std::vector<StdSize> countEdgeFaces(2) ;
	760	std::vector<StdSize> startFaceConctv(2) ;
	761	std::vector<StdSize> countFaceConctv(2) ;
[902]	762
[1494]	763	if (domain->nvertex == 1)
[879]	764	{
[1494]	765	if (domain->isEmpty())
	766	{
	767	startNodes[0]=0 ;
	768	countNodes[0]=0 ;
	769	}
	770	else
	771	{
[1553]	772	startNodes[0] = domain->ibegin;
	773	countNodes[0] = domain->ni ;
[1494]	774	}
[924]	775
[1494]	776	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes);
	777	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes);
	778	}
	779	else if (domain->nvertex == 2)
	780	{
	781	if (domain->isEmpty())
	782	{
	783	startEdges[0]=0 ;
	784	countEdges[0]=0 ;
	785	startNodes[0]=0 ;
	786	countNodes[0]=0 ;
	787	startEdgeNodes[0]=0;
	788	startEdgeNodes[1]=0;
	789	countEdgeNodes[0]=0;
	790	countEdgeNodes[1]=0;
[924]	791
[1494]	792	}
	793	else
	794	{
[1553]	795	startEdges[0] = domain->ibegin;
	796	countEdges[0] = domain->ni;
[1494]	797	startNodes[0] = domain->mesh->node_start;
	798	countNodes[0] = domain->mesh->node_count;
[1553]	799	startEdgeNodes[0] = domain->ibegin;
[1494]	800	startEdgeNodes[1] = 0;
[1553]	801	countEdgeNodes[0] = domain->ni;
[1494]	802	countEdgeNodes[1] = 2;
	803	}
	804	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes);
	805	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes);
	806	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
	807	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
	808	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
	809	}
[879]	810	else
	811	{
[1494]	812	if (domain->isEmpty())
	813	{
	814	startFaces[0] = 0 ;
	815	countFaces[0] = 0 ;
	816	startNodes[0] = 0;
	817	countNodes[0] = 0;
	818	startEdges[0] = 0;
	819	countEdges[0] = 0;
	820	startEdgeFaces[0] = 0;
	821	startEdgeFaces[1] = 0;
	822	countEdgeFaces[0] = 0;
	823	countEdgeFaces[1] = 0;
	824	startFaceConctv[0] = 0;
	825	startFaceConctv[1] = 0;
	826	countFaceConctv[0] = 0;
	827	countFaceConctv[1] = 0;
	828	}
	829	else
	830	{
[1553]	831	startFaces[0] = domain->ibegin;
	832	countFaces[0] = domain->ni ;
[1494]	833	startNodes[0] = domain->mesh->node_start;
	834	countNodes[0] = domain->mesh->node_count;
	835	startEdges[0] = domain->mesh->edge_start;
	836	countEdges[0] = domain->mesh->edge_count;
	837	startEdgeNodes[0] = domain->mesh->edge_start;
	838	startEdgeNodes[1] = 0;
	839	countEdgeNodes[0] = domain->mesh->edge_count;
	840	countEdgeNodes[1]= 2;
	841	startEdgeFaces[0] = domain->mesh->edge_start;
	842	startEdgeFaces[1]= 0;
	843	countEdgeFaces[0] = domain->mesh->edge_count;
	844	countEdgeFaces[1]= 2;
[1553]	845	startFaceConctv[0] = domain->ibegin;
[1494]	846	startFaceConctv[1] = 0;
[1553]	847	countFaceConctv[0] = domain->ni;
[1494]	848	countFaceConctv[1] = domain->nvertex;
	849	}
	850	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes);
	851	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes);
	852	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges);
	853	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges);
	854	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes);
	855	SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0, &startFaces, &countFaces);
	856	SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0, &startFaces, &countFaces);
	857	SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes, isCollective, 0, &startFaceConctv, &countFaceConctv);
	858	SuperClassWriter::writeData(domain->mesh->face_edges, face_edges, isCollective, 0, &startFaceConctv, &countFaceConctv);
	859	SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces, isCollective, 0, &startEdgeFaces, &countEdgeFaces);
	860	SuperClassWriter::writeData(domain->mesh->face_faces, face_faces, isCollective, 0, &startFaceConctv, &countFaceConctv);
	861	}
[879]	862	SuperClassWriter::definition_start();
[878]	863
[879]	864	break;
	865	} // ONE_FILE
[878]	866
[879]	867	case (MULTI_FILE) :
	868	{
[1637]	869	ERROR("CNc4DataOutput::writeDomain(domain)",
	870	<< "[ type = multiple_file ]"
	871	<< " is not yet implemented for UGRID files !");
[879]	872	break;
	873	}
[878]	874
[879]	875	default :
	876	ERROR("CNc4DataOutput::writeDomain(domain)",
	877	<< "[ type = " << SuperClass::type << "]"
	878	<< " not implemented yet !");
	879	} // switch
	880	} // try
[878]	881
[879]	882	catch (CNetCdfException& e)
	883	{
	884	StdString msg("On writing the domain : ");
	885	msg.append(domid); msg.append("\n");
	886	msg.append("In the context : ");
	887	msg.append(context->getId()); msg.append("\n");
	888	msg.append(e.what());
[924]	889	ERROR("CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain)", << msg);
[879]	890	}
[878]	891
[879]	892	domain->addRelFile(this->filename);
	893	}
[878]	894
[879]	895	//--------------------------------------------------------------
[878]	896
[879]	897	void CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)
[449]	898	{
	899	CContext* context = CContext::getCurrent() ;
[488]	900
[449]	901	if (domain->IsWritten(this->filename)) return;
	902	domain->checkAttributes();
[488]	903
	904	if (domain->isEmpty())
[449]	905	if (SuperClass::type==MULTI_FILE) return ;
	906
	907	std::vector<StdString> dim0, dim1;
[772]	908	StdString domid = domain->getDomainOutputName();
[705]	909	if (isWrittenDomain(domid)) return ;
[774]	910	else setWrittenDomain(domid);
[705]	911
[449]	912	StdString appendDomid = (singleDomain) ? "" : "_"+domid ;
	913
[1430]	914	StdString lonName,latName, cellName ;
[1391]	915	if (domain->lon_name.isEmpty()) lonName = "lon";
	916	else lonName = domain->lon_name;
	917
	918	if (domain->lat_name.isEmpty()) latName = "lat";
	919	else latName = domain->lat_name;
	920
[1430]	921	if (!domain->dim_i_name.isEmpty()) cellName=domain->dim_i_name;
	922	else cellName="cell";
	923	StdString dimXid = cellName+appendDomid;
[449]	924	StdString dimVertId = StdString("nvertex").append(appendDomid);
[488]	925
[449]	926	string lonid,latid,bounds_lonid,bounds_latid ;
[611]	927	string areaId = "area" + appendDomid;
[449]	928
[1158]	929	nc_type typePrec ;
	930	if (domain->prec.isEmpty()) typePrec = NC_FLOAT ;
	931	else if (domain->prec==4) typePrec = NC_FLOAT ;
	932	else if (domain->prec==8) typePrec = NC_DOUBLE ;
	933
[1132]	934	int nvertex = (domain->nvertex.isEmpty()) ? 0 : domain->nvertex;
[1025]	935
[1637]	936	CArray<int, 1>& indexToWrite = domain->localIndexToWriteOnServer;
[1132]	937	int nbWritten = indexToWrite.numElements();
	938	CArray<double,1> writtenLat, writtenLon;
	939	CArray<double,2> writtenBndsLat, writtenBndsLon;
	940	CArray<double,1> writtenArea;
	941
	942	if (domain->hasLonLat)
	943	{
	944	writtenLat.resize(nbWritten);
	945	writtenLon.resize(nbWritten);
	946	for (int idx = 0; idx < nbWritten; ++idx)
	947	{
[1637]	948	if (indexToWrite(idx) < 0)
	949	{
	950	writtenLat(idx) = -1.;
	951	writtenLon(idx) = -1.;
	952	}
	953	else
	954	{
	955	writtenLat(idx) = domain->latvalue(indexToWrite(idx));
	956	writtenLon(idx) = domain->lonvalue(indexToWrite(idx));
	957	}
[1132]	958	}
[1390]	959	}
[1132]	960
[1390]	961	if (domain->hasBounds)
	962	{
	963	int nvertex = domain->nvertex, idx;
	964	writtenBndsLat.resize(nvertex, nbWritten);
	965	writtenBndsLon.resize(nvertex, nbWritten);
	966	CArray<double,2>& boundslat = domain->bounds_latvalue;
	967	CArray<double,2>& boundslon = domain->bounds_lonvalue;
	968	for (idx = 0; idx < nbWritten; ++idx)
	969	{
	970	for (int nv = 0; nv < nvertex; ++nv)
	971	{
[1637]	972	if (indexToWrite(idx) < 0)
[1132]	973	{
[1637]	974	writtenBndsLat(nv, idx) = -1.;
	975	writtenBndsLon(nv, idx) = -1.;
[1132]	976	}
[1390]	977	else
	978	{
[1637]	979	writtenBndsLat(nv, idx) = boundslat(nv, int(indexToWrite(idx)));
	980	writtenBndsLon(nv, idx) = boundslon(nv, int(indexToWrite(idx)));
[1390]	981	}
	982	}
[1132]	983	}
	984	}
	985
	986	if (domain->hasArea)
	987	{
	988	writtenArea.resize(nbWritten);
	989	for (int idx = 0; idx < nbWritten; ++idx)
	990	{
[1637]	991	if (indexToWrite(idx) < 0)
	992	writtenArea(idx) = -1.;
	993	else
	994	writtenArea(idx) = domain->areavalue(indexToWrite(idx));
[1132]	995	}
	996	}
	997
[498]	998	try
[449]	999	{
[498]	1000	switch (SuperClass::type)
	1001	{
	1002	case (MULTI_FILE) :
	1003	{
	1004	dim0.push_back(dimXid);
[1553]	1005	SuperClassWriter::addDimension(dimXid, domain->ni);
[488]	1006
[1415]	1007	lonid = lonName+appendDomid;
	1008	latid = latName+appendDomid;
[1430]	1009	if (!domain->bounds_lon_name.isEmpty()) bounds_lonid = domain->bounds_lon_name;
	1010	else bounds_lonid = "bounds_"+lonName+appendDomid;
	1011	if (!domain->bounds_lat_name.isEmpty()) bounds_latid = domain->bounds_lat_name;
	1012	else bounds_latid = "bounds_"+latName+appendDomid;
	1013
[665]	1014	if (domain->hasLonLat)
	1015	{
[1456]	1016	SuperClassWriter::addVariable(latid, typePrec, dim0, compressionLevel);
	1017	SuperClassWriter::addVariable(lonid, typePrec, dim0, compressionLevel);
[665]	1018	this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid);
	1019	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid);
	1020	this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid);
	1021	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid);
	1022	if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex);
	1023	}
[498]	1024	dim0.clear();
	1025	if (domain->hasBounds)
	1026	{
	1027	dim0.push_back(dimXid);
	1028	dim0.push_back(dimVertId);
[1456]	1029	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0, compressionLevel);
	1030	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0, compressionLevel);
[498]	1031	}
	1032
	1033	dim0.clear();
[449]	1034	dim0.push_back(dimXid);
[611]	1035	if (domain->hasArea)
	1036	{
[1456]	1037	SuperClassWriter::addVariable(areaId, typePrec, dim0, compressionLevel);
[614]	1038	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
[611]	1039	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
	1040	}
	1041
[498]	1042	SuperClassWriter::definition_end();
[449]	1043
[665]	1044	if (domain->hasLonLat)
[498]	1045	{
[1132]	1046	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0);
	1047	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0);
[665]	1048	if (domain->hasBounds)
	1049	{
[1132]	1050	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0);
	1051	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0);
[665]	1052	}
[498]	1053	}
[611]	1054
	1055	if (domain->hasArea)
[1132]	1056	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0);
[611]	1057
[498]	1058	SuperClassWriter::definition_start();
	1059	break ;
	1060	}
[488]	1061
[498]	1062	case (ONE_FILE) :
	1063	{
[1415]	1064	lonid = lonName+appendDomid;
	1065	latid = latName+appendDomid;
[1430]	1066	if (!domain->bounds_lon_name.isEmpty()) bounds_lonid = domain->bounds_lon_name;
	1067	else bounds_lonid = "bounds_"+lonName+appendDomid;
	1068	if (!domain->bounds_lat_name.isEmpty()) bounds_latid = domain->bounds_lat_name;
	1069	else bounds_latid = "bounds_"+latName+appendDomid;
[1391]	1070
[498]	1071	dim0.push_back(dimXid);
[1132]	1072	SuperClassWriter::addDimension(dimXid, domain->ni_glo);
[665]	1073	if (domain->hasLonLat)
	1074	{
[1456]	1075	SuperClassWriter::addVariable(latid, typePrec, dim0, compressionLevel);
	1076	SuperClassWriter::addVariable(lonid, typePrec, dim0, compressionLevel);
[665]	1077
	1078	this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid);
	1079	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid);
	1080	this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid);
	1081	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid);
[1025]	1082	if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, nvertex);
[665]	1083	}
[498]	1084	dim0.clear();
[449]	1085
[498]	1086	if (domain->hasBounds)
	1087	{
	1088	dim0.push_back(dimXid);
	1089	dim0.push_back(dimVertId);
[1456]	1090	SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0, compressionLevel);
	1091	SuperClassWriter::addVariable(bounds_latid, typePrec, dim0, compressionLevel);
[498]	1092	}
[488]	1093
[611]	1094	if (domain->hasArea)
	1095	{
	1096	dim0.clear();
	1097	dim0.push_back(dimXid);
[1456]	1098	SuperClassWriter::addVariable(areaId, typePrec, dim0, compressionLevel);
[614]	1099	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
[611]	1100	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
	1101	}
	1102
[498]	1103	SuperClassWriter::definition_end();
[488]	1104
[498]	1105	std::vector<StdSize> start(1), startBounds(2) ;
	1106	std::vector<StdSize> count(1), countBounds(2) ;
	1107	if (domain->isEmpty())
	1108	{
	1109	start[0]=0 ;
	1110	count[0]=0 ;
	1111	startBounds[1]=0 ;
[1025]	1112	countBounds[1]=nvertex ;
[498]	1113	startBounds[0]=0 ;
	1114	countBounds[0]=0 ;
	1115	}
	1116	else
	1117	{
[1553]	1118	start[0]=domain->ibegin;
	1119	count[0]=domain->ni;
	1120	startBounds[0]=domain->ibegin;
[498]	1121	startBounds[1]=0 ;
[1553]	1122	countBounds[0]=domain->ni;
[1025]	1123	countBounds[1]=nvertex ;
[498]	1124	}
[665]	1125
	1126	if (domain->hasLonLat)
[498]	1127	{
[1132]	1128	SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count);
	1129	SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count);
[665]	1130	if (domain->hasBounds)
	1131	{
[1132]	1132	SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0,&startBounds,&countBounds);
	1133	SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0,&startBounds,&countBounds);
[665]	1134	}
[498]	1135	}
[488]	1136
[611]	1137	if (domain->hasArea)
[1132]	1138	SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0, &start, &count);
[488]	1139
[498]	1140	SuperClassWriter::definition_start();
[488]	1141
[498]	1142	break;
	1143	}
	1144	default :
	1145	ERROR("CNc4DataOutput::writeDomain(domain)",
	1146	<< "[ type = " << SuperClass::type << "]"
	1147	<< " not implemented yet !");
	1148	}
[219]	1149	}
[498]	1150	catch (CNetCdfException& e)
	1151	{
	1152	StdString msg("On writing the domain : ");
	1153	msg.append(domid); msg.append("\n");
	1154	msg.append("In the context : ");
	1155	msg.append(context->getId()); msg.append("\n");
	1156	msg.append(e.what());
	1157	ERROR("CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)", << msg);
	1158	}
[219]	1159	domain->addRelFile(this->filename);
	1160	}
	1161	//--------------------------------------------------------------
	1162
[347]	1163	void CNc4DataOutput::writeAxis_(CAxis* axis)
[219]	1164	{
[1030]	1165	if (axis->IsWritten(this->filename)) return;
	1166	axis->checkAttributes();
[488]	1167
[1129]	1168	axis->computeWrittenIndex();
[1249]	1169	axis->computeWrittenCompressedIndex(comm_file);
[1129]	1170
[1559]	1171	int size = (MULTI_FILE == SuperClass::type) ? axis->n.getValue()
	1172	: axis->n_glo.getValue();
[1099]	1173
[1559]	1174	if ((0 == axis->n) && (MULTI_FILE == SuperClass::type)) return;
[1235]	1175
[1030]	1176	std::vector<StdString> dims;
	1177	StdString axisid = axis->getAxisOutputName();
[1435]	1178	StdString axisDim, axisBoundsId;
[1030]	1179	if (isWrittenAxis(axisid)) return ;
	1180	else setWrittenAxis(axisid);
[705]	1181
[1158]	1182	nc_type typePrec ;
	1183	if (axis->prec.isEmpty()) typePrec = NC_FLOAT ;
[1235]	1184	else if (axis->prec==4) typePrec = NC_FLOAT ;
[1158]	1185	else if (axis->prec==8) typePrec = NC_DOUBLE ;
	1186
	1187	if (!axis->label.isEmpty()) typePrec = NC_CHAR ;
	1188	string strId="str_len" ;
[1030]	1189	try
	1190	{
[1433]	1191	if (axis->dim_name.isEmpty()) axisDim = axisid;
	1192	else axisDim=axis->dim_name.getValue();
[1559]	1193	SuperClassWriter::addDimension(axisDim, size);
[1433]	1194	dims.push_back(axisDim);
	1195
[1439]	1196	if (!axis->label.isEmpty() && !SuperClassWriter::dimExist(strId)) SuperClassWriter::addDimension(strId, stringArrayLen);
[1433]	1197
[1435]	1198	if (axis->hasValue \|\| !axis->label.isEmpty())
[816]	1199	{
[1158]	1200	if (!axis->label.isEmpty()) dims.push_back(strId);
[1430]	1201
[1456]	1202	SuperClassWriter::addVariable(axisid, typePrec, dims, compressionLevel);
[219]	1203
[1030]	1204	if (!axis->name.isEmpty())
	1205	SuperClassWriter::addAttribute("name", axis->name.getValue(), &axisid);
[219]	1206
[1030]	1207	if (!axis->standard_name.isEmpty())
	1208	SuperClassWriter::addAttribute("standard_name", axis->standard_name.getValue(), &axisid);
[540]	1209
[1030]	1210	if (!axis->long_name.isEmpty())
	1211	SuperClassWriter::addAttribute("long_name", axis->long_name.getValue(), &axisid);
[219]	1212
[1030]	1213	if (!axis->unit.isEmpty())
	1214	SuperClassWriter::addAttribute("units", axis->unit.getValue(), &axisid);
[219]	1215
[1430]	1216	if (!axis->axis_type.isEmpty())
	1217	{
	1218	switch(axis->axis_type)
	1219	{
	1220	case CAxis::axis_type_attr::X :
	1221	SuperClassWriter::addAttribute("axis", string("X"), &axisid);
	1222	break;
	1223	case CAxis::axis_type_attr::Y :
	1224	SuperClassWriter::addAttribute("axis", string("Y"), &axisid);
	1225	break;
	1226	case CAxis::axis_type_attr::Z :
	1227	SuperClassWriter::addAttribute("axis", string("Z"), &axisid);
	1228	break;
	1229	case CAxis::axis_type_attr::T :
	1230	SuperClassWriter::addAttribute("axis", string("T"), &axisid);
	1231	break;
	1232	}
	1233	}
	1234
[1030]	1235	if (!axis->positive.isEmpty())
	1236	{
	1237	SuperClassWriter::addAttribute("positive",
	1238	(axis->positive == CAxis::positive_attr::up) ? string("up") : string("down"),
	1239	&axisid);
	1240	}
[399]	1241
[1266]	1242	if (!axis->formula.isEmpty())
	1243	SuperClassWriter::addAttribute("formula", axis->formula.getValue(), &axisid);
	1244
	1245	if (!axis->formula_term.isEmpty())
	1246	SuperClassWriter::addAttribute("formula_term", axis->formula_term.getValue(), &axisid);
	1247
[1435]	1248	axisBoundsId = (axis->bounds_name.isEmpty()) ? axisid + "_bounds" : axis->bounds_name;
[1249]	1249	if (!axis->bounds.isEmpty() && axis->label.isEmpty())
[1030]	1250	{
	1251	dims.push_back("axis_nbounds");
[1456]	1252	SuperClassWriter::addVariable(axisBoundsId, typePrec, dims, compressionLevel);
[1030]	1253	SuperClassWriter::addAttribute("bounds", axisBoundsId, &axisid);
[1288]	1254
	1255	if (!axis->standard_name.isEmpty())
	1256	SuperClassWriter::addAttribute("standard_name", axis->standard_name.getValue(), &axisBoundsId);
	1257
	1258	if (!axis->unit.isEmpty())
	1259	SuperClassWriter::addAttribute("units", axis->unit.getValue(), &axisBoundsId);
	1260
[1266]	1261	if (!axis->formula_bounds.isEmpty())
[1288]	1262	SuperClassWriter::addAttribute("formula", axis->formula_bounds.getValue(), &axisBoundsId);
[1266]	1263
	1264	if (!axis->formula_term_bounds.isEmpty())
[1288]	1265	SuperClassWriter::addAttribute("formula_term", axis->formula_term_bounds.getValue(), &axisBoundsId);
[1030]	1266	}
[1435]	1267	}
[816]	1268
[1435]	1269	SuperClassWriter::definition_end();
	1270
[1637]	1271	CArray<int, 1>& indexToWrite = axis->localIndexToWriteOnServer;
[1435]	1272	int nbWritten = indexToWrite.numElements();
	1273	CArray<double,1> axis_value(indexToWrite.numElements());
	1274	if (!axis->value.isEmpty())
	1275	{
[1421]	1276	for (int i = 0; i < nbWritten; i++)
	1277	{
[1637]	1278	if (indexToWrite(i) < 0)
	1279	axis_value(i) = -1; // Some value in case of a hole
	1280	else
[1421]	1281	axis_value(i) = axis->value(indexToWrite(i));
	1282	}
[1435]	1283	}
	1284	CArray<double,2> axis_bounds;
	1285	CArray<string,1> axis_label;
	1286	if (!axis->label.isEmpty())
	1287	{
	1288	axis_label.resize(indexToWrite.numElements());
	1289	for (int i = 0; i < nbWritten; i++)
[1235]	1290	{
[1637]	1291	if (indexToWrite(i) < 0)
	1292	axis_label(i) = boost::lexical_cast<string>(-1); // Some value in case of a hole
	1293	else
[1435]	1294	axis_label(i) = axis->label(indexToWrite(i));
[1235]	1295	}
[1435]	1296	}
[1129]	1297
[1435]	1298	switch (SuperClass::type)
	1299	{
	1300	case MULTI_FILE:
[1030]	1301	{
[1435]	1302	if (axis->label.isEmpty())
[1437]	1303	{
	1304	if (!axis->value.isEmpty())
	1305	SuperClassWriter::writeData(axis_value, axisid, isCollective, 0);
[633]	1306
[1437]	1307	if (!axis->bounds.isEmpty())
	1308	{
[1129]	1309	axis_bounds.resize(2, indexToWrite.numElements());
	1310	for (int i = 0; i < nbWritten; ++i)
	1311	{
[1637]	1312	if (indexToWrite(i) < 0)
[1421]	1313	{
[1637]	1314	axis_bounds(0, i) = -1.; // Some value in case of a hole
	1315	axis_bounds(1, i) = -1.;
[1421]	1316	}
	1317	else
	1318	{
[1637]	1319	axis_bounds(0, i) = axis->bounds(0, int(indexToWrite(i)));
	1320	axis_bounds(1, i) = axis->bounds(1, int(indexToWrite(i)));
[1421]	1321	}
[1129]	1322	}
[1437]	1323	SuperClassWriter::writeData(axis_bounds, axisBoundsId, isCollective, 0);
	1324	}
[1435]	1325	}
[1437]	1326	else
[1435]	1327	SuperClassWriter::writeData(axis_label, axisid, isCollective, 0);
	1328
	1329	SuperClassWriter::definition_start();
	1330	break;
	1331	}
	1332	case ONE_FILE:
	1333	{
	1334	std::vector<StdSize> start(1), startBounds(2) ;
	1335	std::vector<StdSize> count(1), countBounds(2) ;
[1559]	1336	start[0] = startBounds[0] = axis->begin;
	1337	count[0] = countBounds[0] = axis->n;
[1435]	1338	startBounds[1] = 0;
	1339	countBounds[1] = 2;
	1340
	1341	if (axis->label.isEmpty())
[1437]	1342	{
	1343	if (!axis->value.isEmpty())
	1344	SuperClassWriter::writeData(axis_value, axisid, isCollective, 0, &start, &count);
[1435]	1345
[1437]	1346	if (!axis->bounds.isEmpty())
[1235]	1347	{
[1437]	1348	axis_bounds.resize(2, indexToWrite.numElements());
	1349	for (int i = 0; i < nbWritten; ++i)
[1435]	1350	{
[1637]	1351	if (indexToWrite(i) < 0)
[1437]	1352	{
[1637]	1353	axis_bounds(0, i) = -1.;
	1354	axis_bounds(1, i) = -1.;
[1437]	1355	}
	1356	else
	1357	{
[1637]	1358	axis_bounds(0, i) = axis->bounds(0, int(indexToWrite(i)));
	1359	axis_bounds(1, i) = axis->bounds(1, int(indexToWrite(i)));
[1437]	1360	}
[1435]	1361	}
[1437]	1362	SuperClassWriter::writeData(axis_bounds, axisBoundsId, isCollective, 0, &startBounds, &countBounds);
[1235]	1363	}
[1435]	1364	}
[1437]	1365	else
[1435]	1366	{
	1367	std::vector<StdSize> startLabel(2), countLabel(2);
	1368	startLabel[0] = start[0]; startLabel[1] = 0;
	1369	countLabel[0] = count[0]; countLabel[1] = stringArrayLen;
	1370	SuperClassWriter::writeData(axis_label, axisid, isCollective, 0, &startLabel, &countLabel);
	1371	}
[609]	1372
[1435]	1373	SuperClassWriter::definition_start();
	1374
	1375	break;
[609]	1376	}
[1435]	1377	default :
	1378	ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)",
	1379	<< "[ type = " << SuperClass::type << "]"
	1380	<< " not implemented yet !");
[609]	1381	}
[1030]	1382	}
	1383	catch (CNetCdfException& e)
	1384	{
	1385	StdString msg("On writing the axis : ");
	1386	msg.append(axisid); msg.append("\n");
	1387	msg.append("In the context : ");
	1388	CContext* context = CContext::getCurrent() ;
	1389	msg.append(context->getId()); msg.append("\n");
	1390	msg.append(e.what());
	1391	ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)", << msg);
	1392	}
[1158]	1393	axis->addRelFile(this->filename);
[391]	1394	}
[488]	1395
[887]	1396	void CNc4DataOutput::writeScalar_(CScalar* scalar)
	1397	{
	1398	if (scalar->IsWritten(this->filename)) return;
	1399	scalar->checkAttributes();
	1400	int scalarSize = 1;
	1401
	1402	StdString scalaId = scalar->getScalarOutputName();
[1430]	1403	StdString boundsId;
[887]	1404	if (isWrittenAxis(scalaId)) return ;
	1405	else setWrittenAxis(scalaId);
	1406
[1158]	1407	nc_type typePrec ;
	1408	if (scalar->prec.isEmpty()) typePrec = NC_FLOAT ;
	1409	else if (scalar->prec==4) typePrec = NC_FLOAT ;
	1410	else if (scalar->prec==8) typePrec = NC_DOUBLE ;
	1411
[1435]	1412	if (!scalar->label.isEmpty()) typePrec = NC_CHAR ;
	1413	string strId="str_len" ;
	1414
[887]	1415	try
	1416	{
[1439]	1417	if (!scalar->label.isEmpty() && !SuperClassWriter::dimExist(strId)) SuperClassWriter::addDimension(strId, stringArrayLen);
[1435]	1418
	1419	if (!scalar->value.isEmpty() \|\| !scalar->label.isEmpty())
[887]	1420	{
[1430]	1421	std::vector<StdString> dims;
	1422	StdString scalarDim = scalaId;
	1423
[1435]	1424	if (!scalar->label.isEmpty()) dims.push_back(strId);
	1425
[1158]	1426	SuperClassWriter::addVariable(scalaId, typePrec, dims);
[887]	1427
	1428	if (!scalar->name.isEmpty())
	1429	SuperClassWriter::addAttribute("name", scalar->name.getValue(), &scalaId);
	1430
	1431	if (!scalar->standard_name.isEmpty())
	1432	SuperClassWriter::addAttribute("standard_name", scalar->standard_name.getValue(), &scalaId);
	1433
	1434	if (!scalar->long_name.isEmpty())
	1435	SuperClassWriter::addAttribute("long_name", scalar->long_name.getValue(), &scalaId);
	1436
	1437	if (!scalar->unit.isEmpty())
	1438	SuperClassWriter::addAttribute("units", scalar->unit.getValue(), &scalaId);
	1439
[1430]	1440	if (!scalar->axis_type.isEmpty())
	1441	{
	1442	switch(scalar->axis_type)
	1443	{
	1444	case CScalar::axis_type_attr::X :
	1445	SuperClassWriter::addAttribute("axis", string("X"), &scalaId);
	1446	break;
	1447	case CScalar::axis_type_attr::Y :
	1448	SuperClassWriter::addAttribute("axis", string("Y"), &scalaId);
	1449	break;
	1450	case CScalar::axis_type_attr::Z :
	1451	SuperClassWriter::addAttribute("axis", string("Z"), &scalaId);
	1452	break;
	1453	case CScalar::axis_type_attr::T :
	1454	SuperClassWriter::addAttribute("axis", string("T"), &scalaId);
	1455	break;
	1456	}
	1457	}
	1458
[1435]	1459	if (!scalar->positive.isEmpty())
[1430]	1460	{
[1435]	1461	SuperClassWriter::addAttribute("positive",
	1462	(scalar->positive == CScalar::positive_attr::up) ? string("up") : string("down"),
	1463	&scalaId);
	1464	}
	1465
	1466	if (!scalar->bounds.isEmpty() && scalar->label.isEmpty())
	1467	{
[1436]	1468	dims.clear();
	1469	dims.push_back("axis_nbounds");
[1435]	1470	boundsId = (scalar->bounds_name.isEmpty()) ? (scalaId + "_bounds") : scalar->bounds_name.getValue();
[1430]	1471	SuperClassWriter::addVariable(boundsId, typePrec, dims);
[1436]	1472	SuperClassWriter::addAttribute("bounds", boundsId, &scalaId);
[1430]	1473	}
	1474
[887]	1475	SuperClassWriter::definition_end();
	1476
	1477	switch (SuperClass::type)
	1478	{
	1479	case MULTI_FILE:
	1480	{
	1481	CArray<double,1> scalarValue(scalarSize);
[1435]	1482	CArray<string,1> scalarLabel(scalarSize);
[1436]	1483	CArray<double,1> scalarBounds(scalarSize*2);
[1435]	1484
	1485	if (!scalar->value.isEmpty() && scalar->label.isEmpty())
[1430]	1486	{
[1435]	1487	scalarValue(0) = scalar->value;
	1488	SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0);
	1489	}
	1490
	1491	if (!scalar->bounds.isEmpty() && scalar->label.isEmpty())
	1492	{
[1436]	1493	scalarBounds(0) = scalar->bounds(0);
	1494	scalarBounds(1) = scalar->bounds(1);
	1495	SuperClassWriter::writeData(scalarBounds, boundsId, isCollective, 0);
[1430]	1496	}
[1435]	1497
	1498	if (!scalar->label.isEmpty())
	1499	{
	1500	scalarLabel(0) = scalar->label;
	1501	SuperClassWriter::writeData(scalarLabel, scalaId, isCollective, 0);
	1502	}
	1503
[887]	1504	SuperClassWriter::definition_start();
	1505
	1506	break;
	1507	}
	1508	case ONE_FILE:
	1509	{
	1510	CArray<double,1> scalarValue(scalarSize);
[1435]	1511	CArray<string,1> scalarLabel(scalarSize);
[1436]	1512	CArray<double,1> scalarBounds(scalarSize*2);
[887]	1513
	1514	std::vector<StdSize> start(1);
	1515	std::vector<StdSize> count(1);
	1516	start[0] = 0;
	1517	count[0] = 1;
[1435]	1518	if (!scalar->value.isEmpty() && scalar->label.isEmpty())
[1430]	1519	{
[1435]	1520	scalarValue(0) = scalar->value;
	1521	SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0, &start, &count);
	1522	}
	1523	if (!scalar->bounds.isEmpty() && scalar->label.isEmpty())
	1524	{
[1436]	1525	scalarBounds(0) = scalar->bounds(0);
	1526	scalarBounds(1) = scalar->bounds(1);
	1527	count[0] = 2;
	1528	SuperClassWriter::writeData(scalarBounds, boundsId, isCollective, 0, &start, &count);
[1430]	1529	}
[1435]	1530	if (!scalar->label.isEmpty())
	1531	{
	1532	scalarLabel(0) = scalar->label;
	1533	count[0] = stringArrayLen;
	1534	SuperClassWriter::writeData(scalarLabel, scalaId, isCollective, 0, &start, &count);
	1535	}
	1536
[887]	1537	SuperClassWriter::definition_start();
	1538
	1539	break;
	1540	}
	1541	default :
	1542	ERROR("CNc4DataOutput::writeAxis_(CAxis* scalar)",
	1543	<< "[ type = " << SuperClass::type << "]"
	1544	<< " not implemented yet !");
	1545	}
	1546	}
	1547	}
	1548	catch (CNetCdfException& e)
	1549	{
	1550	StdString msg("On writing the scalar : ");
	1551	msg.append(scalaId); msg.append("\n");
	1552	msg.append("In the context : ");
	1553	CContext* context = CContext::getCurrent() ;
	1554	msg.append(context->getId()); msg.append("\n");
	1555	msg.append(e.what());
	1556	ERROR("CNc4DataOutput::writeScalar_(CScalar* scalar)", << msg);
	1557	}
	1558	scalar->addRelFile(this->filename);
	1559	}
	1560
[676]	1561	//--------------------------------------------------------------
	1562
	1563	void CNc4DataOutput::writeGridCompressed_(CGrid* grid)
	1564	{
	1565	if (grid->isScalarGrid() \|\| grid->isWrittenCompressed(this->filename)) return;
	1566
	1567	try
	1568	{
[887]	1569	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
[676]	1570	std::vector<StdString> domainList = grid->getDomainList();
	1571	std::vector<StdString> axisList = grid->getAxisList();
[887]	1572	std::vector<StdString> scalarList = grid->getScalarList();
	1573	int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0;
[676]	1574
	1575	std::vector<StdString> dims;
	1576
	1577	if (grid->isCompressible())
	1578	{
	1579	StdString varId = grid->getId() + "_points";
	1580
	1581	int nbIndexes = (SuperClass::type == MULTI_FILE) ? grid->getNumberWrittenIndexes() : grid->getTotalNumberWrittenIndexes();
	1582	SuperClassWriter::addDimension(varId, nbIndexes);
	1583
	1584	dims.push_back(varId);
	1585	SuperClassWriter::addVariable(varId, NC_INT, dims);
	1586
	1587	StdOStringStream compress;
	1588	for (int i = numElement - 1; i >= 0; --i)
	1589	{
[887]	1590	if (2 == axisDomainOrder(i))
[676]	1591	{
	1592	CDomain* domain = CDomain::get(domainList[domainList.size() - idxDomain - 1]);
[772]	1593	StdString domId = domain->getDomainOutputName();
[676]	1594	StdString appendDomId = singleDomain ? "" : "_" + domId;
	1595
	1596	switch (domain->type)
	1597	{
	1598	case CDomain::type_attr::curvilinear:
	1599	compress << "y" << appendDomId << " x" << appendDomId;
	1600	break;
	1601	case CDomain::type_attr::rectilinear:
	1602	compress << "lat" << appendDomId << " lon" << appendDomId;
	1603	break;
	1604	case CDomain::type_attr::unstructured:
[1430]	1605	StdString cellName = (!domain->dim_i_name.isEmpty()) ? cellName=domain->dim_i_name : "cell";
	1606	compress << cellName << appendDomId;
	1607	// compress << "cell" << appendDomId;
[676]	1608	break;
	1609	}
	1610	++idxDomain;
	1611	}
[887]	1612	else if (1 == axisDomainOrder(i))
[676]	1613	{
	1614	CAxis* axis = CAxis::get(axisList[axisList.size() - idxAxis - 1]);
[772]	1615	compress << axis->getAxisOutputName();
[676]	1616	++idxAxis;
	1617	}
[887]	1618	else
	1619	{
	1620	CScalar* scalar = CScalar::get(scalarList[scalarList.size() - idxScalar - 1]);
	1621	compress << scalar->getScalarOutputName();
	1622	++idxScalar;
	1623	}
[676]	1624
	1625	if (i != 0) compress << ' ';
	1626	}
[1144]	1627	SuperClassWriter::addAttribute("compress", compress.str(), &varId);
[676]	1628
	1629	CArray<int, 1> indexes(grid->getNumberWrittenIndexes());
[1847]	1630	indexes = grid->localIndexToWriteOnServer_;
[676]	1631
	1632	switch (SuperClass::type)
	1633	{
	1634	case (MULTI_FILE):
	1635	{
	1636	SuperClassWriter::writeData(indexes, varId, isCollective, 0);
	1637	break;
	1638	}
	1639	case (ONE_FILE):
	1640	{
	1641	if (grid->doGridHaveDataDistributed())
[1871]	1642	grid->getServerDistribution()->computeGlobalIndex(indexes);
[676]	1643
	1644	std::vector<StdSize> start, count;
	1645	start.push_back(grid->getOffsetWrittenIndexes());
	1646	count.push_back(grid->getNumberWrittenIndexes());
	1647
	1648	SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count);
	1649	break;
	1650	}
	1651	}
	1652	}
	1653	else
	1654	{
	1655	for (int i = 0; i < numElement; ++i)
	1656	{
	1657	StdString varId, compress;
	1658	CArray<int, 1> indexes;
	1659	bool isDistributed;
	1660	StdSize nbIndexes, totalNbIndexes, offset;
	1661	int firstGlobalIndex;
	1662
[887]	1663	if (2 == axisDomainOrder(i))
[676]	1664	{
	1665	CDomain* domain = CDomain::get(domainList[idxDomain]);
[774]	1666	StdString domId = domain->getDomainOutputName();
	1667
[676]	1668	if (!domain->isCompressible()
	1669	\|\| domain->type == CDomain::type_attr::unstructured
[774]	1670	\|\| domain->isWrittenCompressed(this->filename)
	1671	\|\| isWrittenCompressedDomain(domId))
[676]	1672	continue;
	1673
	1674	StdString appendDomId = singleDomain ? "" : "_" + domId;
	1675
	1676	varId = domId + "_points";
	1677	switch (domain->type)
	1678	{
	1679	case CDomain::type_attr::curvilinear:
	1680	compress = "y" + appendDomId + " x" + appendDomId;
	1681	break;
	1682	case CDomain::type_attr::rectilinear:
	1683	compress = "lat" + appendDomId + " lon" + appendDomId;
	1684	break;
	1685	}
	1686
[1249]	1687	// indexes.resize(domain->compressedIndexToWriteOnServer[comm_file].numElements());
	1688	// indexes = domain->compressedIndexToWriteOnServer[com_file];
	1689	indexes.resize(domain->getCompressedIndexToWriteOnServer(comm_file).numElements());
	1690	indexes = domain->getCompressedIndexToWriteOnServer(comm_file);
[1143]	1691
[676]	1692	isDistributed = domain->isDistributed();
[1249]	1693	nbIndexes = domain->getNumberWrittenIndexes(comm_file);
	1694	totalNbIndexes = domain->getTotalNumberWrittenIndexes(comm_file);
	1695	offset = domain->getOffsetWrittenIndexes(comm_file);
[676]	1696	firstGlobalIndex = domain->ibegin + domain->jbegin * domain->ni_glo;
	1697
	1698	domain->addRelFileCompressed(this->filename);
[774]	1699	setWrittenCompressedDomain(domId);
[676]	1700	++idxDomain;
	1701	}
[887]	1702	else if (1 == axisDomainOrder(i))
[676]	1703	{
	1704	CAxis* axis = CAxis::get(axisList[idxAxis]);
[774]	1705	StdString axisId = axis->getAxisOutputName();
	1706
	1707	if (!axis->isCompressible()
	1708	\|\| axis->isWrittenCompressed(this->filename)
	1709	\|\| isWrittenCompressedAxis(axisId))
[676]	1710	continue;
	1711
	1712	varId = axisId + "_points";
	1713	compress = axisId;
	1714
[1249]	1715	// indexes.resize(axis->compressedIndexToWriteOnServer.numElements());
	1716	// indexes = axis->compressedIndexToWriteOnServer;
[1143]	1717
[1249]	1718	indexes.resize(axis->getCompressedIndexToWriteOnServer(comm_file).numElements());
	1719	indexes = axis->getCompressedIndexToWriteOnServer(comm_file);
	1720
[676]	1721	isDistributed = axis->isDistributed();
[1249]	1722	nbIndexes = axis->getNumberWrittenIndexes(comm_file);
	1723	totalNbIndexes = axis->getTotalNumberWrittenIndexes(comm_file);
	1724	offset = axis->getOffsetWrittenIndexes(comm_file);
[676]	1725	firstGlobalIndex = axis->begin;
	1726
	1727	axis->addRelFileCompressed(this->filename);
[774]	1728	setWrittenCompressedAxis(axisId);
[676]	1729	++idxAxis;
	1730	}
[887]	1731	else
	1732	{
	1733	}
[676]	1734
	1735	if (!varId.empty())
	1736	{
	1737	SuperClassWriter::addDimension(varId, (SuperClass::type == MULTI_FILE) ? nbIndexes : totalNbIndexes);
	1738
	1739	dims.clear();
	1740	dims.push_back(varId);
	1741	SuperClassWriter::addVariable(varId, NC_INT, dims);
	1742
	1743	SuperClassWriter::addAttribute("compress", compress, &varId);
	1744
	1745	switch (SuperClass::type)
	1746	{
	1747	case (MULTI_FILE):
	1748	{
	1749	indexes -= firstGlobalIndex;
	1750	SuperClassWriter::writeData(indexes, varId, isCollective, 0);
	1751	break;
	1752	}
	1753	case (ONE_FILE):
	1754	{
	1755	std::vector<StdSize> start, count;
	1756	start.push_back(offset);
	1757	count.push_back(nbIndexes);
	1758
	1759	SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count);
	1760	break;
	1761	}
	1762	}
	1763	}
[1144]	1764	}
[676]	1765	}
	1766
	1767	grid->addRelFileCompressed(this->filename);
	1768	}
	1769	catch (CNetCdfException& e)
	1770	{
	1771	StdString msg("On writing compressed grid : ");
	1772	msg.append(grid->getId()); msg.append("\n");
	1773	msg.append("In the context : ");
	1774	CContext* context = CContext::getCurrent();
	1775	msg.append(context->getId()); msg.append("\n");
	1776	msg.append(e.what());
	1777	ERROR("CNc4DataOutput::writeGridCompressed_(CGrid* grid)", << msg);
	1778	}
	1779	}
	1780
	1781	//--------------------------------------------------------------
	1782
[391]	1783	void CNc4DataOutput::writeTimeDimension_(void)
	1784	{
[498]	1785	try
	1786	{
[802]	1787	SuperClassWriter::addDimension(getTimeCounterName());
[498]	1788	}
	1789	catch (CNetCdfException& e)
	1790	{
[614]	1791	StdString msg("On writing time dimension : time_couter\n");
[498]	1792	msg.append("In the context : ");
	1793	CContext* context = CContext::getCurrent() ;
	1794	msg.append(context->getId()); msg.append("\n");
	1795	msg.append(e.what());
	1796	ERROR("CNc4DataOutput::writeTimeDimension_(void)", << msg);
	1797	}
[391]	1798	}
[676]	1799
[219]	1800	//--------------------------------------------------------------
	1801
[347]	1802	void CNc4DataOutput::writeField_(CField* field)
[219]	1803	{
[1158]	1804	CContext* context = CContext::getCurrent() ;
[300]	1805
[1158]	1806	std::vector<StdString> dims, coodinates;
[1869]	1807	CGrid* grid = field->getGrid();
[1158]	1808	if (!grid->doGridHaveDataToWrite())
[567]	1809	if (SuperClass::type==MULTI_FILE) return ;
[488]	1810
[1158]	1811	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
	1812	int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0;
	1813	std::vector<StdString> domainList = grid->getDomainList();
	1814	std::vector<StdString> axisList = grid->getAxisList();
	1815	std::vector<StdString> scalarList = grid->getScalarList();
[219]	1816
[1158]	1817	StdString timeid = getTimeCounterName();
	1818	StdString dimXid,dimYid;
	1819	std::deque<StdString> dimIdList, dimCoordList;
	1820	bool hasArea = false;
	1821	StdString cellMeasures = "area:";
	1822	bool compressedOutput = !field->indexed_output.isEmpty() && field->indexed_output;
[488]	1823
[1158]	1824	for (int i = 0; i < numElement; ++i)
	1825	{
	1826	if (2 == axisDomainOrder(i))
	1827	{
	1828	CDomain* domain = CDomain::get(domainList[idxDomain]);
	1829	StdString domId = domain->getDomainOutputName();
	1830	StdString appendDomId = singleDomain ? "" : "_" + domId ;
[1391]	1831	StdString lonName,latName ;
[1430]	1832	StdString dimIname,dimJname ;
[676]	1833
[1415]	1834	if (domain->lon_name.isEmpty())
	1835	{
	1836	if (domain->type==CDomain::type_attr::curvilinear) lonName = "nav_lon";
	1837	else lonName = "lon";
	1838	}
[1391]	1839	else lonName = domain->lon_name;
	1840
[1415]	1841	if (domain->lat_name.isEmpty())
	1842	{
	1843	if (domain->type==CDomain::type_attr::curvilinear) latName = "nav_lat";
	1844	else latName = "lat";
	1845	}
[1391]	1846	else latName = domain->lat_name;
[1430]	1847
	1848	if (domain->dim_i_name.isEmpty())
	1849	{
	1850	if (domain->type==CDomain::type_attr::curvilinear) dimIname = "x";
	1851	else if (domain->type==CDomain::type_attr::unstructured) dimIname = "cell";
	1852	else dimIname = lonName;
	1853	}
	1854	else dimIname = domain->dim_i_name;
	1855
	1856	if (domain->dim_j_name.isEmpty())
	1857	{
	1858	if (domain->type==CDomain::type_attr::curvilinear) dimJname = "y";
	1859	else dimJname = latName;
	1860	}
	1861	else dimJname = domain->dim_j_name;
[1391]	1862
[1158]	1863	if (compressedOutput && domain->isCompressible() && domain->type != CDomain::type_attr::unstructured)
	1864	{
	1865	dimIdList.push_back(domId + "_points");
	1866	field->setUseCompressedOutput();
	1867	}
[676]	1868
[1158]	1869	switch (domain->type)
[879]	1870	{
[1158]	1871	case CDomain::type_attr::curvilinear:
	1872	if (!compressedOutput \|\| !domain->isCompressible())
	1873	{
[1430]	1874	dimXid=dimIname+appendDomId;
	1875	dimYid=dimJname+appendDomId;
[1158]	1876	dimIdList.push_back(dimXid);
	1877	dimIdList.push_back(dimYid);
	1878	}
[1415]	1879	dimCoordList.push_back(lonName+appendDomId);
	1880	dimCoordList.push_back(latName+appendDomId);
[1158]	1881	break ;
	1882	case CDomain::type_attr::rectilinear:
	1883	if (!compressedOutput \|\| !domain->isCompressible())
	1884	{
[1430]	1885	dimXid = dimIname+appendDomId;
	1886	dimYid = dimJname+appendDomId;
[1158]	1887	dimIdList.push_back(dimXid);
	1888	dimIdList.push_back(dimYid);
	1889	}
[1430]	1890	if (lonName != dimIname) dimCoordList.push_back(lonName+appendDomId);
	1891	if (latName != dimJname) dimCoordList.push_back(latName+appendDomId);
	1892
[1158]	1893	break ;
	1894	case CDomain::type_attr::unstructured:
	1895	{
	1896	if (SuperClassWriter::useCFConvention)
	1897	{
[1430]	1898	dimXid = dimIname + appendDomId;
[1158]	1899	dimIdList.push_back(dimXid);
[1415]	1900	dimCoordList.push_back(lonName+appendDomId);
	1901	dimCoordList.push_back(latName+appendDomId);
[1158]	1902	}
	1903	else
	1904	{
	1905	StdString domainName = domain->name;
	1906	if (domain->nvertex == 1)
	1907	{
	1908	dimXid = "n" + domainName + "_node";
	1909	dimIdList.push_back(dimXid);
	1910	dimCoordList.push_back(StdString(domainName + "_node_x"));
	1911	dimCoordList.push_back(StdString(domainName + "_node_y"));
	1912	}
	1913	else if (domain->nvertex == 2)
	1914	{
	1915	dimXid = "n" + domainName + "_edge";
	1916	dimIdList.push_back(dimXid);
	1917	dimCoordList.push_back(StdString(domainName + "_edge_x"));
	1918	dimCoordList.push_back(StdString(domainName + "_edge_y"));
	1919	}
	1920	else
	1921	{
	1922	dimXid = "n" + domainName + "_face";
	1923	dimIdList.push_back(dimXid);
	1924	dimCoordList.push_back(StdString(domainName + "_face_x"));
	1925	dimCoordList.push_back(StdString(domainName + "_face_y"));
	1926	}
	1927	} // ugrid convention
	1928	} // case unstructured domain
[879]	1929	}
[1158]	1930
	1931	if (domain->hasArea)
[879]	1932	{
[1158]	1933	hasArea = true;
	1934	cellMeasures += " area" + appendDomId;
[879]	1935	}
[1158]	1936	++idxDomain;
	1937	}
	1938	else if (1 == axisDomainOrder(i))
	1939	{
	1940	CAxis* axis = CAxis::get(axisList[idxAxis]);
	1941	StdString axisId = axis->getAxisOutputName();
[1430]	1942	StdString axisDim;
[1158]	1943
[1430]	1944	if (axis->dim_name.isEmpty()) axisDim = axisId;
	1945	else axisDim=axis->dim_name.getValue();
	1946
[1158]	1947	if (compressedOutput && axis->isCompressible())
[879]	1948	{
[1430]	1949	dimIdList.push_back(axisDim + "_points");
[1158]	1950	field->setUseCompressedOutput();
[879]	1951	}
[1158]	1952	else
[1430]	1953	dimIdList.push_back(axisDim);
[878]	1954
[1430]	1955	if (axisDim != axisId) dimCoordList.push_back(axisId);
[1158]	1956	++idxAxis;
	1957	}
[1430]	1958	else
[1158]	1959	{
[1430]	1960	CScalar* scalar = CScalar::get(scalarList[idxScalar]);
	1961	StdString scalarId = scalar->getScalarOutputName();
[1446]	1962	if (!scalar->value.isEmpty() \|\| !scalar->label.isEmpty())
	1963	dimCoordList.push_back(scalarId);
[1430]	1964	++idxScalar;
[1158]	1965	}
	1966	}
[488]	1967
[1158]	1968	StdString fieldid = field->getFieldOutputName();
[219]	1969
[1158]	1970	nc_type type ;
	1971	if (field->prec.isEmpty()) type = NC_FLOAT ;
	1972	else
	1973	{
	1974	if (field->prec==2) type = NC_SHORT ;
	1975	else if (field->prec==4) type = NC_FLOAT ;
	1976	else if (field->prec==8) type = NC_DOUBLE ;
	1977	}
[488]	1978
[1158]	1979	bool wtime = !(!field->operation.isEmpty() && field->getOperationTimeType() == func::CFunctor::once);
[488]	1980
[1158]	1981	if (wtime)
	1982	{
	1983	if (field->hasTimeInstant && hasTimeInstant) coodinates.push_back(string("time_instant"));
	1984	else if (field->hasTimeCentered && hasTimeCentered) coodinates.push_back(string("time_centered"));
	1985	dims.push_back(timeid);
	1986	}
[488]	1987
[1158]	1988	if (compressedOutput && grid->isCompressible())
	1989	{
	1990	dims.push_back(grid->getId() + "_points");
	1991	field->setUseCompressedOutput();
	1992	}
	1993	else
	1994	{
	1995	while (!dimIdList.empty())
	1996	{
	1997	dims.push_back(dimIdList.back());
	1998	dimIdList.pop_back();
	1999	}
	2000	}
[219]	2001
[1158]	2002	while (!dimCoordList.empty())
	2003	{
	2004	coodinates.push_back(dimCoordList.back());
	2005	dimCoordList.pop_back();
	2006	}
[219]	2007
[1158]	2008	try
	2009	{
[498]	2010	SuperClassWriter::addVariable(fieldid, type, dims);
[488]	2011
[498]	2012	if (!field->standard_name.isEmpty())
	2013	SuperClassWriter::addAttribute
	2014	("standard_name", field->standard_name.getValue(), &fieldid);
[219]	2015
[498]	2016	if (!field->long_name.isEmpty())
	2017	SuperClassWriter::addAttribute
	2018	("long_name", field->long_name.getValue(), &fieldid);
[219]	2019
[498]	2020	if (!field->unit.isEmpty())
	2021	SuperClassWriter::addAttribute
	2022	("units", field->unit.getValue(), &fieldid);
[463]	2023
[1158]	2024	// Ugrid field attributes "mesh" and "location"
	2025	if (!SuperClassWriter::useCFConvention)
	2026	{
	2027	if (!domainList.empty())
	2028	{
	2029	CDomain* domain = CDomain::get(domainList[0]); // Suppose that we have only domain
	2030	StdString mesh = domain->name;
	2031	SuperClassWriter::addAttribute("mesh", mesh, &fieldid);
	2032	StdString location;
	2033	if (domain->nvertex == 1)
	2034	location = "node";
	2035	else if (domain->nvertex == 2)
	2036	location = "edge";
	2037	else if (domain->nvertex > 2)
	2038	location = "face";
	2039	SuperClassWriter::addAttribute("location", location, &fieldid);
	2040	}
	2041
	2042	}
	2043
	2044	if (!field->valid_min.isEmpty())
[498]	2045	SuperClassWriter::addAttribute
	2046	("valid_min", field->valid_min.getValue(), &fieldid);
[463]	2047
[498]	2048	if (!field->valid_max.isEmpty())
	2049	SuperClassWriter::addAttribute
	2050	("valid_max", field->valid_max.getValue(), &fieldid);
[464]	2051
[498]	2052	if (!field->scale_factor.isEmpty())
	2053	SuperClassWriter::addAttribute
	2054	("scale_factor", field->scale_factor.getValue(), &fieldid);
[464]	2055
[498]	2056	if (!field->add_offset.isEmpty())
	2057	SuperClassWriter::addAttribute
	2058	("add_offset", field->add_offset.getValue(), &fieldid);
[488]	2059
[498]	2060	SuperClassWriter::addAttribute
	2061	("online_operation", field->operation.getValue(), &fieldid);
[472]	2062
[498]	2063	// write child variables as attributes
[488]	2064
	2065
[1021]	2066	bool alreadyAddCellMethod = false;
	2067	StdString cellMethodsPrefix(""), cellMethodsSuffix("");
	2068	if (!field->cell_methods.isEmpty())
	2069	{
[1158]	2070	StdString cellMethodString = field->cell_methods;
	2071	if (field->cell_methods_mode.isEmpty() \|\|
[1021]	2072	(CField::cell_methods_mode_attr::overwrite == field->cell_methods_mode))
[1158]	2073	{
	2074	SuperClassWriter::addAttribute("cell_methods", cellMethodString, &fieldid);
	2075	alreadyAddCellMethod = true;
	2076	}
	2077	else
	2078	{
	2079	switch (field->cell_methods_mode)
	2080	{
	2081	case (CField::cell_methods_mode_attr::prefix):
	2082	cellMethodsPrefix = cellMethodString;
	2083	cellMethodsPrefix += " ";
	2084	break;
	2085	case (CField::cell_methods_mode_attr::suffix):
	2086	cellMethodsSuffix = " ";
	2087	cellMethodsSuffix += cellMethodString;
	2088	break;
	2089	case (CField::cell_methods_mode_attr::none):
	2090	break;
	2091	default:
	2092	break;
	2093	}
	2094	}
[1021]	2095	}
[488]	2096
[1021]	2097
[498]	2098	if (wtime)
	2099	{
[614]	2100	CDuration freqOp = field->freq_op.getValue();
	2101	freqOp.solveTimeStep(*context->calendar);
	2102	StdString freqOpStr = freqOp.toStringUDUnits();
[612]	2103	SuperClassWriter::addAttribute("interval_operation", freqOpStr, &fieldid);
[437]	2104
[614]	2105	CDuration freqOut = field->getRelFile()->output_freq.getValue();
	2106	freqOut.solveTimeStep(*context->calendar);
	2107	SuperClassWriter::addAttribute("interval_write", freqOut.toStringUDUnits(), &fieldid);
[612]	2108
[1021]	2109	StdString cellMethods(cellMethodsPrefix + "time: ");
[612]	2110	if (field->operation.getValue() == "instant") cellMethods += "point";
	2111	else if (field->operation.getValue() == "average") cellMethods += "mean";
	2112	else if (field->operation.getValue() == "accumulate") cellMethods += "sum";
	2113	else cellMethods += field->operation;
[614]	2114	if (freqOp.resolve(context->calendar) != freqOut.resolve(context->calendar))
	2115	cellMethods += " (interval: " + freqOpStr + ")";
[1021]	2116	cellMethods += cellMethodsSuffix;
	2117	if (!alreadyAddCellMethod)
	2118	SuperClassWriter::addAttribute("cell_methods", cellMethods, &fieldid);
[498]	2119	}
[488]	2120
[611]	2121	if (hasArea)
	2122	SuperClassWriter::addAttribute("cell_measures", cellMeasures, &fieldid);
	2123
[498]	2124	if (!field->default_value.isEmpty())
	2125	{
[1424]	2126	double default_value = field->default_value.getValue();
	2127	if (type == NC_DOUBLE)
	2128	{
	2129	SuperClassWriter::setDefaultValue(fieldid, &default_value);
	2130	}
	2131	else if (type == NC_SHORT)
	2132	{
	2133	short sdefault_value = (short)default_value;
	2134	SuperClassWriter::setDefaultValue(fieldid, &sdefault_value);
	2135	}
	2136	else
	2137	{
	2138	float fdefault_value = (float)default_value;
	2139	SuperClassWriter::setDefaultValue(fieldid, &fdefault_value);
	2140	}
[498]	2141	}
	2142	else
[517]	2143	SuperClassWriter::setDefaultValue(fieldid, (double*)NULL);
[219]	2144
[606]	2145	if (field->compression_level.isEmpty())
[1872]	2146	field->compression_level = field->getRelFile()->compression_level.isEmpty() ? 0 : field->getRelFile()->compression_level;
[606]	2147	SuperClassWriter::setCompressionLevel(fieldid, field->compression_level);
	2148
[878]	2149	{ // Ecriture des coordonnes
[488]	2150
[498]	2151	StdString coordstr; //boost::algorithm::join(coodinates, " ")
	2152	std::vector<StdString>::iterator
	2153	itc = coodinates.begin(), endc = coodinates.end();
[488]	2154
[498]	2155	for (; itc!= endc; itc++)
	2156	{
	2157	StdString & coord = *itc;
	2158	if (itc+1 != endc)
	2159	coordstr.append(coord).append(" ");
	2160	else coordstr.append(coord);
	2161	}
[219]	2162
[498]	2163	SuperClassWriter::addAttribute("coordinates", coordstr, &fieldid);
[219]	2164
[498]	2165	}
[1222]	2166
	2167	vector<CVariable*> listVars = field->getAllVariables() ;
	2168	for (vector<CVariable>::iterator it = listVars.begin() ;it != listVars.end(); it++) writeAttribute_(it, fieldid) ;
	2169
[219]	2170	}
[498]	2171	catch (CNetCdfException& e)
	2172	{
	2173	StdString msg("On writing field : ");
	2174	msg.append(fieldid); msg.append("\n");
	2175	msg.append("In the context : ");
	2176	msg.append(context->getId()); msg.append("\n");
	2177	msg.append(e.what());
	2178	ERROR("CNc4DataOutput::writeField_(CField* field)", << msg);
	2179	}
[879]	2180	} // writeField_()
[219]	2181
	2182	//--------------------------------------------------------------
	2183
[347]	2184	void CNc4DataOutput::writeFile_ (CFile* file)
[219]	2185	{
[773]	2186	StdString filename = file->getFileOutputName();
[219]	2187	StdString description = (!file->description.isEmpty())
	2188	? file->description.getValue()
[335]	2189	: StdString("Created by xios");
[609]	2190
	2191	singleDomain = (file->nbDomains == 1);
	2192
[1158]	2193	StdString conv_str ;
	2194	if (file->convention_str.isEmpty())
	2195	{
	2196	if (SuperClassWriter::useCFConvention) conv_str="CF-1.6" ;
	2197	else conv_str="UGRID" ;
	2198	}
	2199	else conv_str=file->convention_str ;
	2200
[498]	2201	try
	2202	{
[1309]	2203	if (!appendMode) this->writeFileAttributes(filename, description,
	2204	conv_str,
	2205	StdString("An IPSL model"),
	2206	this->getTimeStamp());
[609]	2207
[701]	2208	if (!appendMode)
	2209	SuperClassWriter::addDimension("axis_nbounds", 2);
[498]	2210	}
	2211	catch (CNetCdfException& e)
	2212	{
	2213	StdString msg("On writing file : ");
	2214	msg.append(filename); msg.append("\n");
	2215	msg.append("In the context : ");
	2216	CContext* context = CContext::getCurrent() ;
	2217	msg.append(context->getId()); msg.append("\n");
	2218	msg.append(e.what());
	2219	ERROR("CNc4DataOutput::writeFile_ (CFile* file)", << msg);
	2220	}
[219]	2221	}
[488]	2222
[472]	2223	void CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)
	2224	{
[773]	2225	StdString name = var->getVariableOutputName();
[488]	2226
[498]	2227	try
	2228	{
[527]	2229	if (var->type.getValue() == CVariable::type_attr::t_int \|\| var->type.getValue() == CVariable::type_attr::t_int32)
	2230	addAttribute(name, var->getData<int>(), &fieldId);
	2231	else if (var->type.getValue() == CVariable::type_attr::t_int16)
	2232	addAttribute(name, var->getData<short int>(), &fieldId);
	2233	else if (var->type.getValue() == CVariable::type_attr::t_float)
	2234	addAttribute(name, var->getData<float>(), &fieldId);
	2235	else if (var->type.getValue() == CVariable::type_attr::t_double)
	2236	addAttribute(name, var->getData<double>(), &fieldId);
	2237	else if (var->type.getValue() == CVariable::type_attr::t_string)
	2238	addAttribute(name, var->getData<string>(), &fieldId);
	2239	else
	2240	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)",
	2241	<< "Unsupported variable of type " << var->type.getStringValue());
[498]	2242	}
	2243	catch (CNetCdfException& e)
	2244	{
	2245	StdString msg("On writing attributes of variable with name : ");
	2246	msg.append(name); msg.append("in the field "); msg.append(fieldId); msg.append("\n");
	2247	msg.append("In the context : ");
	2248	CContext* context = CContext::getCurrent() ;
	2249	msg.append(context->getId()); msg.append("\n");
	2250	msg.append(e.what());
	2251	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", << msg);
	2252	}
[472]	2253	}
[488]	2254
[472]	2255	void CNc4DataOutput::writeAttribute_ (CVariable* var)
	2256	{
[773]	2257	StdString name = var->getVariableOutputName();
	2258
[498]	2259	try
	2260	{
[527]	2261	if (var->type.getValue() == CVariable::type_attr::t_int \|\| var->type.getValue() == CVariable::type_attr::t_int32)
	2262	addAttribute(name, var->getData<int>());
	2263	else if (var->type.getValue() == CVariable::type_attr::t_int16)
	2264	addAttribute(name, var->getData<short int>());
	2265	else if (var->type.getValue() == CVariable::type_attr::t_float)
	2266	addAttribute(name, var->getData<float>());
	2267	else if (var->type.getValue() == CVariable::type_attr::t_double)
	2268	addAttribute(name, var->getData<double>());
	2269	else if (var->type.getValue() == CVariable::type_attr::t_string)
	2270	addAttribute(name, var->getData<string>());
	2271	else
	2272	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)",
	2273	<< "Unsupported variable of type " << var->type.getStringValue());
[498]	2274	}
	2275	catch (CNetCdfException& e)
	2276	{
	2277	StdString msg("On writing attributes of variable with name : ");
	2278	msg.append(name); msg.append("\n");
	2279	msg.append("In the context : ");
	2280	CContext* context = CContext::getCurrent() ;
	2281	msg.append(context->getId()); msg.append("\n");
	2282	msg.append(e.what());
	2283	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", << msg);
	2284	}
[488]	2285	}
	2286
[321]	2287	void CNc4DataOutput::syncFile_ (void)
	2288	{
[498]	2289	try
	2290	{
	2291	SuperClassWriter::sync() ;
	2292	}
	2293	catch (CNetCdfException& e)
	2294	{
	2295	StdString msg("On synchronizing the write among processes");
	2296	msg.append("In the context : ");
	2297	CContext* context = CContext::getCurrent() ;
	2298	msg.append(context->getId()); msg.append("\n");
	2299	msg.append(e.what());
	2300	ERROR("CNc4DataOutput::syncFile_ (void)", << msg);
	2301	}
[321]	2302	}
[219]	2303
[286]	2304	void CNc4DataOutput::closeFile_ (void)
	2305	{
[498]	2306	try
	2307	{
	2308	SuperClassWriter::close() ;
	2309	}
	2310	catch (CNetCdfException& e)
	2311	{
	2312	StdString msg("On closing file");
	2313	msg.append("In the context : ");
	2314	CContext* context = CContext::getCurrent() ;
	2315	msg.append(context->getId()); msg.append("\n");
	2316	msg.append(e.what());
	2317	ERROR("CNc4DataOutput::syncFile_ (void)", << msg);
	2318	}
	2319
[286]	2320	}
	2321
[219]	2322	//---------------------------------------------------------------
	2323
	2324	StdString CNc4DataOutput::getTimeStamp(void) const
	2325	{
	2326	const int buffer_size = 100;
	2327	time_t rawtime;
	2328	struct tm * timeinfo = NULL;
	2329	char buffer [buffer_size];
[1158]	2330	StdString formatStr;
	2331	if (file->time_stamp_format.isEmpty()) formatStr="%Y-%b-%d %H:%M:%S %Z" ;
	2332	else formatStr=file->time_stamp_format;
[219]	2333
[1158]	2334	// time ( &rawtime );
	2335	// timeinfo = localtime ( &rawtime );
[219]	2336	time ( &rawtime );
[1158]	2337	timeinfo = gmtime ( &rawtime );
	2338	strftime (buffer, buffer_size, formatStr.c_str(), timeinfo);
[219]	2339
	2340	return (StdString(buffer));
	2341	}
[488]	2342
[219]	2343	//---------------------------------------------------------------
[488]	2344
[1882]	2345	void CNc4DataOutput::writeFieldData_ (CField* field, const CArray<double,1>& data)
[219]	2346	{
[707]	2347	CContext* context = CContext::getCurrent();
[1869]	2348	CGrid* grid = field->getGrid();
[1882]	2349	CArray<double,1> dataIn(data.copy()) ;
[300]	2350
[1158]	2351	if (field->getNStep()<1)
	2352	{
	2353	return;
	2354	}
[952]	2355
[707]	2356	if (!grid->doGridHaveDataToWrite())
[1158]	2357	if (SuperClass::type == MULTI_FILE \|\| !isCollective)
	2358	{
	2359	return;
	2360	}
[488]	2361
[770]	2362	StdString fieldid = field->getFieldOutputName();
[286]	2363
[707]	2364	StdOStringStream oss;
	2365	string timeAxisId;
[1158]	2366	if (field->hasTimeInstant) timeAxisId = "time_instant";
	2367	else if (field->hasTimeCentered) timeAxisId = "time_centered";
[488]	2368
[802]	2369	StdString timeBoundId = getTimeCounterName() + "_bounds";
[449]	2370
[707]	2371	StdString timeAxisBoundId;
[1158]	2372	if (field->hasTimeInstant) timeAxisBoundId = "time_instant_bounds";
	2373	else if (field->hasTimeCentered) timeAxisBoundId = "time_centered_bounds";
[488]	2374
[707]	2375	if (!field->wasWritten())
	2376	{
[1872]	2377	if (appendMode && field->getRelFile()->record_offset.isEmpty() &&
[1158]	2378	field->getOperationTimeType() != func::CFunctor::once)
[707]	2379	{
[1158]	2380	double factorUnit;
[1872]	2381	if (!field->getRelFile()->time_units.isEmpty() && field->getRelFile()->time_units==CFile::time_units_attr::days)
[1158]	2382	factorUnit=context->getCalendar()->getDayLengthInSeconds() ;
	2383	else factorUnit=1 ;
	2384	field->resetNStep(getRecordFromTime(field->last_Write_srv,factorUnit) + 1);
[707]	2385	}
[488]	2386
[707]	2387	field->setWritten();
	2388	}
[488]	2389
	2390
[707]	2391	CArray<double,1> time_data(1);
	2392	CArray<double,1> time_data_bound(2);
	2393	CArray<double,1> time_counter(1);
	2394	CArray<double,1> time_counter_bound(2);
	2395
	2396	bool wtime = (field->getOperationTimeType() != func::CFunctor::once);
[1158]	2397	bool wtimeCounter =false ;
	2398	bool wtimeData =false ;
	2399
[707]	2400
[444]	2401	if (wtime)
	2402	{
[692]	2403	Time lastWrite = field->last_Write_srv;
	2404	Time lastLastWrite = field->lastlast_Write_srv;
	2405
[1158]	2406
	2407	if (field->hasTimeInstant)
	2408	{
	2409	time_data(0) = time_data_bound(1) = lastWrite;
[692]	2410	time_data_bound(0) = time_data_bound(1) = lastWrite;
[1158]	2411	if (timeCounterType==instant)
	2412	{
	2413	time_counter(0) = time_data(0);
	2414	time_counter_bound(0) = time_data_bound(0);
	2415	time_counter_bound(1) = time_data_bound(1);
	2416	wtimeCounter=true ;
	2417	}
	2418	if (hasTimeInstant) wtimeData=true ;
	2419	}
	2420	else if (field->hasTimeCentered)
[488]	2421	{
[1158]	2422	time_data(0) = (lastWrite + lastLastWrite) / 2;
[692]	2423	time_data_bound(0) = lastLastWrite;
	2424	time_data_bound(1) = lastWrite;
[1158]	2425	if (timeCounterType==centered)
	2426	{
	2427	time_counter(0) = time_data(0) ;
	2428	time_counter_bound(0) = time_data_bound(0) ;
	2429	time_counter_bound(1) = time_data_bound(1) ;
	2430	wtimeCounter=true ;
	2431	}
	2432	if (hasTimeCentered) wtimeData=true ;
[488]	2433	}
	2434
[1158]	2435	if (timeCounterType==record)
	2436	{
[692]	2437	time_counter(0) = field->getNStep() - 1;
[1158]	2438	time_counter_bound(0) = time_counter_bound(1) = field->getNStep() - 1;
	2439	wtimeCounter=true ;
	2440	}
[692]	2441
[1872]	2442	if (!field->getRelFile()->time_units.isEmpty() && field->getRelFile()->time_units==CFile::time_units_attr::days)
[692]	2443	{
[1158]	2444	double secByDay=context->getCalendar()->getDayLengthInSeconds() ;
	2445	time_data/=secByDay;
	2446	time_data_bound/=secByDay;
	2447	time_counter/=secByDay;
	2448	time_counter_bound/=secByDay;
[692]	2449	}
	2450	}
	2451
[1853]	2452	bool isRoot = (context->intraCommRank_ == 0);
[488]	2453
[464]	2454	if (!field->scale_factor.isEmpty() \|\| !field->add_offset.isEmpty())
	2455	{
[707]	2456	double scaleFactor = 1.0;
	2457	double addOffset = 0.0;
	2458	if (!field->scale_factor.isEmpty()) scaleFactor = field->scale_factor;
	2459	if (!field->add_offset.isEmpty()) addOffset = field->add_offset;
[1882]	2460	field->scaleFactorAddOffset(dataIn, scaleFactor, addOffset);
[464]	2461	}
[488]	2462
[498]	2463	try
[219]	2464	{
[676]	2465	size_t writtenSize;
	2466	if (field->getUseCompressedOutput())
	2467	writtenSize = grid->getNumberWrittenIndexes();
	2468	else
	2469	writtenSize = grid->getWrittenDataSize();
	2470
	2471	CArray<double,1> fieldData(writtenSize);
[567]	2472	if (!field->default_value.isEmpty()) fieldData = field->default_value;
[676]	2473
	2474	if (field->getUseCompressedOutput())
[1882]	2475	field->outputCompressedField(dataIn, fieldData);
[676]	2476	else
[1882]	2477	field->outputField(dataIn, fieldData);
[676]	2478
[707]	2479	if (!field->prec.isEmpty() && field->prec == 2) fieldData = round(fieldData);
[567]	2480
	2481	switch (SuperClass::type)
[498]	2482	{
[567]	2483	case (MULTI_FILE) :
	2484	{
[1158]	2485	CTimer::get("Files : writing data").resume();
[692]	2486	SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1);
[1158]	2487	CTimer::get("Files : writing data").suspend();
[567]	2488	if (wtime)
	2489	{
[1158]	2490	CTimer::get("Files : writing time axis").resume();
	2491	if ( wtimeData)
[692]	2492	{
[1158]	2493	SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot);
	2494	SuperClassWriter::writeTimeAxisDataBounds(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot);
	2495	}
	2496	if (wtimeCounter)
	2497	{
	2498	SuperClassWriter::writeTimeAxisData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1,isRoot);
	2499	if (timeCounterType!=record) SuperClassWriter::writeTimeAxisDataBounds(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot);
[692]	2500	}
[1158]	2501	CTimer::get("Files : writing time axis").suspend();
[567]	2502	}
[707]	2503	break;
[567]	2504	}
	2505	case (ONE_FILE) :
	2506	{
[464]	2507
[676]	2508	std::vector<StdSize> start, count;
[464]	2509
[676]	2510	if (field->getUseCompressedOutput())
	2511	{
	2512	if (grid->isCompressible())
	2513	{
	2514	start.push_back(grid->getOffsetWrittenIndexes());
	2515	count.push_back(grid->getNumberWrittenIndexes());
	2516	}
	2517	else
	2518	{
[887]	2519	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
[676]	2520	std::vector<StdString> domainList = grid->getDomainList();
	2521	std::vector<StdString> axisList = grid->getAxisList();
	2522	int numElement = axisDomainOrder.numElements();
	2523	int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1;
[1553]	2524	int idx = domainList.size() * 2 + axisList.size() - 1;
[464]	2525
[1553]	2526	start.reserve(idx+1);
	2527	count.reserve(idx+1);
[676]	2528
	2529	for (int i = numElement - 1; i >= 0; --i)
	2530	{
[887]	2531	if (2 == axisDomainOrder(i))
[676]	2532	{
	2533	CDomain* domain = CDomain::get(domainList[idxDomain]);
	2534
	2535	if (domain->isCompressible())
	2536	{
[1249]	2537	start.push_back(domain->getOffsetWrittenIndexes(comm_file));
	2538	count.push_back(domain->getNumberWrittenIndexes(comm_file));
[710]	2539	idx -= 2;
[676]	2540	}
	2541	else
	2542	{
[710]	2543	if ((domain->type) != CDomain::type_attr::unstructured)
	2544	{
[1553]	2545	start.push_back(domain->jbegin);
	2546	count.push_back(domain->nj);
[710]	2547	}
	2548	--idx;
[1553]	2549	start.push_back(domain->ibegin);
	2550	count.push_back(domain->ni);
[710]	2551	--idx;
[676]	2552	}
	2553	--idxDomain;
	2554	}
[887]	2555	else if (1 == axisDomainOrder(i))
[676]	2556	{
	2557	CAxis* axis = CAxis::get(axisList[idxAxis]);
	2558
	2559	if (axis->isCompressible())
	2560	{
[1249]	2561	start.push_back(axis->getOffsetWrittenIndexes(comm_file));
	2562	count.push_back(axis->getNumberWrittenIndexes(comm_file));
[676]	2563	}
	2564	else
	2565	{
[1553]	2566	start.push_back(axis->begin);
	2567	count.push_back(axis->n);
[676]	2568	}
	2569	--idxAxis;
	2570	--idx;
	2571	}
	2572	}
[1158]	2573	}
[676]	2574	}
	2575	else
[498]	2576	{
[887]	2577	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
[705]	2578	std::vector<StdString> domainList = grid->getDomainList();
	2579	std::vector<StdString> axisList = grid->getAxisList();
	2580	int numElement = axisDomainOrder.numElements();
	2581	int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1;
[1553]	2582	int idx = domainList.size() * 2 + axisList.size() - 1;
[705]	2583
[1553]	2584	start.reserve(idx+1);
	2585	count.reserve(idx+1);
[705]	2586
	2587	for (int i = numElement - 1; i >= 0; --i)
	2588	{
[887]	2589	if (2 == axisDomainOrder(i))
[705]	2590	{
	2591	CDomain* domain = CDomain::get(domainList[idxDomain]);
[710]	2592	if ((domain->type) != CDomain::type_attr::unstructured)
[705]	2593	{
[1553]	2594	start.push_back(domain->jbegin);
	2595	count.push_back(domain->nj);
[705]	2596	}
	2597	--idx ;
[1143]	2598
[1553]	2599	start.push_back(domain->ibegin);
	2600	count.push_back(domain->ni);
[705]	2601	--idx ;
	2602	--idxDomain;
	2603	}
[887]	2604	else if (1 == axisDomainOrder(i))
[705]	2605	{
[1143]	2606	CAxis* axis = CAxis::get(axisList[idxAxis]);
[1559]	2607	start.push_back(axis->begin);
	2608	count.push_back(axis->n);
[705]	2609	--idx;
[1025]	2610	--idxAxis;
[887]	2611	}
	2612	else
	2613	{
	2614	if (1 == axisDomainOrder.numElements())
	2615	{
	2616	start.push_back(0);
	2617	count.push_back(1);
	2618	}
	2619	--idx;
	2620	}
[705]	2621	}
[498]	2622	}
[488]	2623
[1158]	2624
	2625	CTimer::get("Files : writing data").resume();
[676]	2626	SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1, &start, &count);
[1158]	2627	CTimer::get("Files : writing data").suspend();
	2628
	2629	if (wtime)
	2630	{
	2631	CTimer::get("Files : writing time axis").resume();
	2632	if ( wtimeData)
[692]	2633	{
[1158]	2634	SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot);
	2635	SuperClassWriter::writeTimeAxisDataBounds(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot);
[692]	2636	}
[1158]	2637	if (wtimeCounter)
	2638	{
	2639	SuperClassWriter::writeTimeAxisData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1,isRoot);
	2640	if (timeCounterType!=record) SuperClassWriter::writeTimeAxisDataBounds(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot);
[586]	2641
[1158]	2642	}
	2643	CTimer::get("Files : writing time axis").suspend();
	2644	}
	2645
[586]	2646	break;
[286]	2647	}
[567]	2648	}
[219]	2649	}
[498]	2650	catch (CNetCdfException& e)
	2651	{
	2652	StdString msg("On writing field data: ");
	2653	msg.append(fieldid); msg.append("\n");
	2654	msg.append("In the context : ");
	2655	msg.append(context->getId()); msg.append("\n");
	2656	msg.append(e.what());
[1130]	2657	ERROR("CNc4DataOutput::writeFieldData_ (CField* field)", << msg);
[498]	2658	}
[219]	2659	}
	2660
	2661	//---------------------------------------------------------------
	2662
	2663	void CNc4DataOutput::writeTimeAxis_
[347]	2664	(CField* field,
[1542]	2665	const std::shared_ptr<CCalendar> cal)
[219]	2666	{
	2667	StdOStringStream oss;
[1158]	2668	bool createInstantAxis=false ;
	2669	bool createCenteredAxis=false ;
	2670	bool createTimeCounterAxis=false ;
	2671
[645]	2672	if (field->getOperationTimeType() == func::CFunctor::once) return ;
[488]	2673
	2674
[1158]	2675	StdString axisId ;
	2676	StdString axisBoundId;
[802]	2677	StdString timeid(getTimeCounterName());
[614]	2678	StdString timeBoundId("axis_nbounds");
[488]	2679
[1158]	2680	StdString strTimeUnits ;
[1872]	2681	if (!field->getRelFile()->time_units.isEmpty() && field->getRelFile()->time_units==CFile::time_units_attr::days) strTimeUnits="days since " ;
[1158]	2682	else strTimeUnits="seconds since " ;
	2683
	2684	if (field->getOperationTimeType() == func::CFunctor::instant) field->hasTimeInstant = true;
	2685	if (field->getOperationTimeType() == func::CFunctor::centered) field->hasTimeCentered = true;
	2686
	2687
[1872]	2688	if (field->getRelFile()->time_counter.isEmpty())
[488]	2689	{
[1158]	2690	if (timeCounterType==none) createTimeCounterAxis=true ;
	2691	if (field->hasTimeCentered)
	2692	{
	2693	timeCounterType=centered ;
	2694	if (!hasTimeCentered) createCenteredAxis=true ;
	2695	}
	2696	if (field->hasTimeInstant)
	2697	{
	2698	if (timeCounterType==none) timeCounterType=instant ;
	2699	if (!hasTimeInstant) createInstantAxis=true ;
	2700	}
[488]	2701	}
[1872]	2702	else if (field->getRelFile()->time_counter==CFile::time_counter_attr::instant)
[1158]	2703	{
	2704	if (field->hasTimeCentered)
	2705	{
	2706	if (!hasTimeCentered) createCenteredAxis=true ;
	2707	}
	2708	if (field->hasTimeInstant)
	2709	{
	2710	if (timeCounterType==none) createTimeCounterAxis=true ;
	2711	timeCounterType=instant ;
	2712	if (!hasTimeInstant) createInstantAxis=true ;
	2713	}
	2714	}
[1872]	2715	else if (field->getRelFile()->time_counter==CFile::time_counter_attr::centered)
[1158]	2716	{
	2717	if (field->hasTimeCentered)
	2718	{
	2719	if (timeCounterType==none) createTimeCounterAxis=true ;
	2720	timeCounterType=centered ;
	2721	if (!hasTimeCentered) createCenteredAxis=true ;
	2722	}
	2723	if (field->hasTimeInstant)
	2724	{
	2725	if (!hasTimeInstant) createInstantAxis=true ;
	2726	}
	2727	}
[1872]	2728	else if (field->getRelFile()->time_counter==CFile::time_counter_attr::instant_exclusive)
[1158]	2729	{
	2730	if (field->hasTimeCentered)
	2731	{
	2732	if (!hasTimeCentered) createCenteredAxis=true ;
	2733	}
	2734	if (field->hasTimeInstant)
	2735	{
	2736	if (timeCounterType==none) createTimeCounterAxis=true ;
	2737	timeCounterType=instant ;
	2738	}
	2739	}
[1872]	2740	else if (field->getRelFile()->time_counter==CFile::time_counter_attr::centered_exclusive)
[1158]	2741	{
	2742	if (field->hasTimeCentered)
	2743	{
	2744	if (timeCounterType==none) createTimeCounterAxis=true ;
	2745	timeCounterType=centered ;
	2746	}
	2747	if (field->hasTimeInstant)
	2748	{
	2749	if (!hasTimeInstant) createInstantAxis=true ;
	2750	}
	2751	}
[1872]	2752	else if (field->getRelFile()->time_counter==CFile::time_counter_attr::exclusive)
[1158]	2753	{
	2754	if (field->hasTimeCentered)
	2755	{
	2756	if (timeCounterType==none) createTimeCounterAxis=true ;
	2757	if (timeCounterType==instant) createInstantAxis=true ;
	2758	timeCounterType=centered ;
	2759	}
	2760	if (field->hasTimeInstant)
	2761	{
	2762	if (timeCounterType==none)
	2763	{
	2764	createTimeCounterAxis=true ;
	2765	timeCounterType=instant ;
	2766	}
	2767	if (timeCounterType==centered)
	2768	{
	2769	if (!hasTimeInstant) createInstantAxis=true ;
	2770	}
	2771	}
	2772	}
[1872]	2773	else if (field->getRelFile()->time_counter==CFile::time_counter_attr::none)
[1158]	2774	{
	2775	if (field->hasTimeCentered)
	2776	{
	2777	if (!hasTimeCentered) createCenteredAxis=true ;
	2778	}
	2779	if (field->hasTimeInstant)
	2780	{
	2781	if (!hasTimeInstant) createInstantAxis=true ;
	2782	}
	2783	}
[1872]	2784	else if (field->getRelFile()->time_counter==CFile::time_counter_attr::record)
[1158]	2785	{
	2786	if (timeCounterType==none) createTimeCounterAxis=true ;
	2787	timeCounterType=record ;
	2788	if (field->hasTimeCentered)
	2789	{
	2790	if (!hasTimeCentered) createCenteredAxis=true ;
	2791	}
	2792	if (field->hasTimeInstant)
	2793	{
	2794	if (!hasTimeInstant) createInstantAxis=true ;
	2795	}
	2796	}
	2797
	2798	if (createInstantAxis)
	2799	{
	2800	axisId="time_instant" ;
	2801	axisBoundId="time_instant_bounds";
	2802	hasTimeInstant=true ;
	2803	}
[488]	2804
[1158]	2805	if (createCenteredAxis)
	2806	{
	2807	axisId="time_centered" ;
	2808	axisBoundId="time_centered_bounds";
	2809	hasTimeCentered=true ;
	2810	}
	2811
	2812
[498]	2813	try
[219]	2814	{
[1158]	2815	std::vector<StdString> dims;
	2816
	2817	if (createInstantAxis \|\| createCenteredAxis)
	2818	{
	2819	// Adding time_instant or time_centered
	2820	dims.push_back(timeid);
	2821	if (!SuperClassWriter::varExist(axisId))
	2822	{
	2823	SuperClassWriter::addVariable(axisId, NC_DOUBLE, dims);
[488]	2824
[1158]	2825	CDate timeOrigin=cal->getTimeOrigin() ;
	2826	StdOStringStream oss2;
	2827	StdString strInitdate=oss2.str() ;
	2828	StdString strTimeOrigin=timeOrigin.toString() ;
	2829	this->writeTimeAxisAttributes(axisId, cal->getType(),strTimeUnits+strTimeOrigin,
	2830	strTimeOrigin, axisBoundId);
	2831	}
[219]	2832
[1158]	2833	// Adding time_instant_bounds or time_centered_bounds variables
	2834	if (!SuperClassWriter::varExist(axisBoundId))
	2835	{
	2836	dims.clear() ;
	2837	dims.push_back(timeid);
	2838	dims.push_back(timeBoundId);
	2839	SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims);
	2840	}
[498]	2841	}
[488]	2842
[1158]	2843	if (createTimeCounterAxis)
[498]	2844	{
[692]	2845	// Adding time_counter
[1158]	2846	axisId = getTimeCounterName();
[802]	2847	axisBoundId = getTimeCounterName() + "_bounds";
[692]	2848	dims.clear();
	2849	dims.push_back(timeid);
[1158]	2850	if (!SuperClassWriter::varExist(axisId))
[692]	2851	{
[1158]	2852	SuperClassWriter::addVariable(axisId, NC_DOUBLE, dims);
	2853	SuperClassWriter::addAttribute("axis", string("T"), &axisId);
[488]	2854
[1872]	2855	if (field->getRelFile()->time_counter.isEmpty() \|\|
	2856	(field->getRelFile()->time_counter != CFile::time_counter_attr::record))
[692]	2857	{
	2858	CDate timeOrigin = cal->getTimeOrigin();
	2859	StdString strTimeOrigin = timeOrigin.toString();
[498]	2860
[1158]	2861	this->writeTimeAxisAttributes(axisId, cal->getType(),
	2862	strTimeUnits+strTimeOrigin,
[692]	2863	strTimeOrigin, axisBoundId);
	2864	}
	2865	}
	2866
	2867	// Adding time_counter_bound dimension
[1872]	2868	if (field->getRelFile()->time_counter.isEmpty() \|\| (field->getRelFile()->time_counter != CFile::time_counter_attr::record))
[692]	2869	{
	2870	if (!SuperClassWriter::varExist(axisBoundId))
	2871	{
	2872	dims.clear();
	2873	dims.push_back(timeid);
	2874	dims.push_back(timeBoundId);
	2875	SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims);
	2876	}
	2877	}
[498]	2878	}
[488]	2879	}
[498]	2880	catch (CNetCdfException& e)
[488]	2881	{
[498]	2882	StdString msg("On writing time axis data: ");
	2883	msg.append("In the context : ");
	2884	CContext* context = CContext::getCurrent() ;
	2885	msg.append(context->getId()); msg.append("\n");
	2886	msg.append(e.what());
	2887	ERROR("CNc4DataOutput::writeTimeAxis_ (CField* field, \
[1542]	2888	const std::shared_ptr<CCalendar> cal)", << msg);
[488]	2889	}
[219]	2890	}
	2891
	2892	//---------------------------------------------------------------
[488]	2893
[219]	2894	void CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name,
	2895	const StdString & calendar,
	2896	const StdString & units,
	2897	const StdString & time_origin,
[488]	2898	const StdString & time_bounds,
[219]	2899	const StdString & standard_name,
[613]	2900	const StdString & long_name)
[219]	2901	{
[498]	2902	try
	2903	{
	2904	SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name);
	2905	SuperClassWriter::addAttribute("long_name", long_name , &axis_name);
	2906	SuperClassWriter::addAttribute("calendar", calendar , &axis_name);
	2907	SuperClassWriter::addAttribute("units", units , &axis_name);
	2908	SuperClassWriter::addAttribute("time_origin", time_origin , &axis_name);
	2909	SuperClassWriter::addAttribute("bounds", time_bounds , &axis_name);
	2910	}
	2911	catch (CNetCdfException& e)
	2912	{
	2913	StdString msg("On writing time axis Attribute: ");
	2914	msg.append("In the context : ");
	2915	CContext* context = CContext::getCurrent() ;
	2916	msg.append(context->getId()); msg.append("\n");
	2917	msg.append(e.what());
	2918	ERROR("CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, \
[613]	2919	const StdString & calendar,\
	2920	const StdString & units, \
	2921	const StdString & time_origin, \
	2922	const StdString & time_bounds, \
	2923	const StdString & standard_name, \
	2924	const StdString & long_name)", << msg);
[498]	2925	}
[219]	2926	}
[488]	2927
[219]	2928	//---------------------------------------------------------------
	2929
	2930	void CNc4DataOutput::writeAxisAttributes(const StdString & axis_name,
	2931	const StdString & axis,
	2932	const StdString & standard_name,
	2933	const StdString & long_name,
	2934	const StdString & units,
	2935	const StdString & nav_model)
	2936	{
[498]	2937	try
	2938	{
[613]	2939	if (!axis.empty())
	2940	SuperClassWriter::addAttribute("axis" , axis , &axis_name);
	2941
[498]	2942	SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name);
	2943	SuperClassWriter::addAttribute("long_name" , long_name , &axis_name);
	2944	SuperClassWriter::addAttribute("units" , units , &axis_name);
[973]	2945	// SuperClassWriter::addAttribute("nav_model" , nav_model , &axis_name);
[498]	2946	}
	2947	catch (CNetCdfException& e)
	2948	{
	2949	StdString msg("On writing Axis Attribute: ");
	2950	msg.append("In the context : ");
	2951	CContext* context = CContext::getCurrent() ;
	2952	msg.append(context->getId()); msg.append("\n");
	2953	msg.append(e.what());
	2954	ERROR("CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, \
[613]	2955	const StdString & axis, \
	2956	const StdString & standard_name, \
	2957	const StdString & long_name, \
	2958	const StdString & units, \
	2959	const StdString & nav_model)", << msg);
[498]	2960	}
[219]	2961	}
	2962
	2963	//---------------------------------------------------------------
[488]	2964
[219]	2965	void CNc4DataOutput::writeLocalAttributes
	2966	(int ibegin, int ni, int jbegin, int nj, StdString domid)
	2967	{
[498]	2968	try
	2969	{
[318]	2970	SuperClassWriter::addAttribute(StdString("ibegin").append(domid), ibegin);
	2971	SuperClassWriter::addAttribute(StdString("ni" ).append(domid), ni);
	2972	SuperClassWriter::addAttribute(StdString("jbegin").append(domid), jbegin);
	2973	SuperClassWriter::addAttribute(StdString("nj" ).append(domid), nj);
[498]	2974	}
	2975	catch (CNetCdfException& e)
	2976	{
	2977	StdString msg("On writing Local Attributes: ");
	2978	msg.append("In the context : ");
	2979	CContext* context = CContext::getCurrent() ;
	2980	msg.append(context->getId()); msg.append("\n");
	2981	msg.append(e.what());
	2982	ERROR("CNc4DataOutput::writeLocalAttributes \
	2983	(int ibegin, int ni, int jbegin, int nj, StdString domid)", << msg);
	2984	}
	2985
[219]	2986	}
	2987
[628]	2988	void CNc4DataOutput::writeLocalAttributes_IOIPSL(const StdString& dimXid, const StdString& dimYid,
	2989	int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)
[391]	2990	{
	2991	CArray<int,1> array(2) ;
	2992
[498]	2993	try
	2994	{
	2995	SuperClassWriter::addAttribute("DOMAIN_number_total",size ) ;
	2996	SuperClassWriter::addAttribute("DOMAIN_number", rank) ;
[629]	2997	array = SuperClassWriter::getDimension(dimXid) + 1, SuperClassWriter::getDimension(dimYid) + 1;
[498]	2998	SuperClassWriter::addAttribute("DOMAIN_dimensions_ids",array) ;
	2999	array=ni_glo,nj_glo ;
	3000	SuperClassWriter::addAttribute("DOMAIN_size_global", array) ;
	3001	array=ni,nj ;
	3002	SuperClassWriter::addAttribute("DOMAIN_size_local", array) ;
[819]	3003	array=ibegin+1,jbegin+1 ;
[498]	3004	SuperClassWriter::addAttribute("DOMAIN_position_first", array) ;
[819]	3005	array=ibegin+ni-1+1,jbegin+nj-1+1 ;
[498]	3006	SuperClassWriter::addAttribute("DOMAIN_position_last",array) ;
	3007	array=0,0 ;
	3008	SuperClassWriter::addAttribute("DOMAIN_halo_size_start", array) ;
	3009	SuperClassWriter::addAttribute("DOMAIN_halo_size_end", array);
	3010	SuperClassWriter::addAttribute("DOMAIN_type",string("box")) ;
	3011	/*
	3012	SuperClassWriter::addAttribute("DOMAIN_DIM_N001",string("x")) ;
	3013	SuperClassWriter::addAttribute("DOMAIN_DIM_N002",string("y")) ;
	3014	SuperClassWriter::addAttribute("DOMAIN_DIM_N003",string("axis_A")) ;
	3015	SuperClassWriter::addAttribute("DOMAIN_DIM_N004",string("time_counter")) ;
	3016	*/
	3017	}
	3018	catch (CNetCdfException& e)
	3019	{
[628]	3020	StdString msg("On writing Local Attributes IOIPSL \n");
[498]	3021	msg.append("In the context : ");
	3022	CContext* context = CContext::getCurrent() ;
	3023	msg.append(context->getId()); msg.append("\n");
	3024	msg.append(e.what());
	3025	ERROR("CNc4DataOutput::writeLocalAttributes_IOIPSL \
	3026	(int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)", << msg);
	3027	}
[391]	3028	}
[219]	3029	//---------------------------------------------------------------
	3030
	3031	void CNc4DataOutput:: writeFileAttributes(const StdString & name,
	3032	const StdString & description,
	3033	const StdString & conventions,
	3034	const StdString & production,
	3035	const StdString & timeStamp)
	3036	{
[498]	3037	try
	3038	{
	3039	SuperClassWriter::addAttribute("name" , name);
	3040	SuperClassWriter::addAttribute("description", description);
[613]	3041	SuperClassWriter::addAttribute("title" , description);
	3042	SuperClassWriter::addAttribute("Conventions", conventions);
[1158]	3043	// SuperClassWriter::addAttribute("production" , production);
	3044
	3045	StdString timeStampStr ;
	3046	if (file->time_stamp_name.isEmpty()) timeStampStr="timeStamp" ;
	3047	else timeStampStr=file->time_stamp_name ;
	3048	SuperClassWriter::addAttribute(timeStampStr, timeStamp);
	3049
	3050	StdString uuidName ;
	3051	if (file->uuid_name.isEmpty()) uuidName="uuid" ;
	3052	else uuidName=file->uuid_name ;
	3053
	3054	if (file->uuid_format.isEmpty()) SuperClassWriter::addAttribute(uuidName, getUuidStr());
	3055	else SuperClassWriter::addAttribute(uuidName, getUuidStr(file->uuid_format));
	3056
[498]	3057	}
	3058	catch (CNetCdfException& e)
	3059	{
	3060	StdString msg("On writing File Attributes \n ");
	3061	msg.append("In the context : ");
	3062	CContext* context = CContext::getCurrent() ;
	3063	msg.append(context->getId()); msg.append("\n");
	3064	msg.append(e.what());
	3065	ERROR("CNc4DataOutput:: writeFileAttributes(const StdString & name, \
	3066	const StdString & description, \
	3067	const StdString & conventions, \
	3068	const StdString & production, \
	3069	const StdString & timeStamp)", << msg);
	3070	}
[219]	3071	}
	3072
	3073	//---------------------------------------------------------------
	3074
	3075	void CNc4DataOutput::writeMaskAttributes(const StdString & mask_name,
	3076	int data_dim,
	3077	int data_ni,
	3078	int data_nj,
	3079	int data_ibegin,
	3080	int data_jbegin)
	3081	{
[498]	3082	try
	3083	{
	3084	SuperClassWriter::addAttribute("data_dim" , data_dim , &mask_name);
	3085	SuperClassWriter::addAttribute("data_ni" , data_ni , &mask_name);
	3086	SuperClassWriter::addAttribute("data_nj" , data_nj , &mask_name);
	3087	SuperClassWriter::addAttribute("data_ibegin", data_ibegin, &mask_name);
	3088	SuperClassWriter::addAttribute("data_jbegin", data_jbegin, &mask_name);
	3089	}
	3090	catch (CNetCdfException& e)
	3091	{
	3092	StdString msg("On writing Mask Attributes \n ");
	3093	msg.append("In the context : ");
	3094	CContext* context = CContext::getCurrent() ;
	3095	msg.append(context->getId()); msg.append("\n");
	3096	msg.append(e.what());
	3097	ERROR("CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, \
	3098	int data_dim, \
	3099	int data_ni, \
	3100	int data_nj, \
	3101	int data_ibegin, \
	3102	int data_jbegin)", << msg);
	3103	}
[219]	3104	}
	3105
	3106	///--------------------------------------------------------------
	3107
[1158]	3108	StdSize CNc4DataOutput::getRecordFromTime(Time time, double factorUnit)
[707]	3109	{
	3110	std::map<Time, StdSize>::const_iterator it = timeToRecordCache.find(time);
	3111	if (it == timeToRecordCache.end())
	3112	{
[802]	3113	StdString timeAxisBoundsId(getTimeCounterName() + "_bounds");
[1158]	3114	if (!SuperClassWriter::varExist(timeAxisBoundsId)) timeAxisBoundsId = "time_centered_bounds";
	3115	if (!SuperClassWriter::varExist(timeAxisBoundsId)) timeAxisBoundsId = "time_instant_bounds";
[707]	3116
	3117	CArray<double,2> timeAxisBounds;
[1158]	3118	std::vector<StdSize> dimSize(SuperClassWriter::getDimensions(timeAxisBoundsId)) ;
	3119
[707]	3120	StdSize record = 0;
	3121	double dtime(time);
[1158]	3122	for (int n = dimSize[0] - 1; n >= 0; n--)
[707]	3123	{
[1158]	3124	SuperClassWriter::getTimeAxisBounds(timeAxisBounds, timeAxisBoundsId, isCollective, n);
	3125	timeAxisBounds*=factorUnit ;
	3126	if (timeAxisBounds(1, 0) < dtime)
[707]	3127	{
	3128	record = n + 1;
	3129	break;
	3130	}
	3131	}
	3132	it = timeToRecordCache.insert(std::make_pair(time, record)).first;
	3133	}
	3134	return it->second;
	3135	}
[774]	3136
	3137	///--------------------------------------------------------------
	3138
	3139	bool CNc4DataOutput::isWrittenDomain(const std::string& domainName) const
	3140	{
	3141	return (this->writtenDomains.find(domainName) != this->writtenDomains.end());
	3142	}
	3143
	3144	bool CNc4DataOutput::isWrittenCompressedDomain(const std::string& domainName) const
	3145	{
	3146	return (this->writtenCompressedDomains.find(domainName) != this->writtenCompressedDomains.end());
	3147	}
	3148
	3149	bool CNc4DataOutput::isWrittenAxis(const std::string& axisName) const
	3150	{
	3151	return (this->writtenAxis.find(axisName) != this->writtenAxis.end());
	3152	}
	3153
	3154	bool CNc4DataOutput::isWrittenCompressedAxis(const std::string& axisName) const
	3155	{
	3156	return (this->writtenCompressedAxis.find(axisName) != this->writtenCompressedAxis.end());
	3157	}
	3158
[887]	3159	bool CNc4DataOutput::isWrittenScalar(const std::string& scalarName) const
	3160	{
	3161	return (this->writtenScalar.find(scalarName) != this->writtenScalar.end());
	3162	}
	3163
[774]	3164	void CNc4DataOutput::setWrittenDomain(const std::string& domainName)
	3165	{
	3166	this->writtenDomains.insert(domainName);
	3167	}
	3168
	3169	void CNc4DataOutput::setWrittenCompressedDomain(const std::string& domainName)
	3170	{
	3171	this->writtenCompressedDomains.insert(domainName);
	3172	}
	3173
	3174	void CNc4DataOutput::setWrittenAxis(const std::string& axisName)
	3175	{
	3176	this->writtenAxis.insert(axisName);
	3177	}
	3178
	3179	void CNc4DataOutput::setWrittenCompressedAxis(const std::string& axisName)
	3180	{
	3181	this->writtenCompressedAxis.insert(axisName);
	3182	}
[887]	3183
	3184	void CNc4DataOutput::setWrittenScalar(const std::string& scalarName)
	3185	{
	3186	this->writtenScalar.insert(scalarName);
	3187	}
[335]	3188	} // namespace xios

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