source: XIOS/dev/dev_ym/XIOS_COUPLING/src/node/domain.hpp @ 1934

Last change on this file since 1934 was 1934, checked in by ymipsl, 4 years ago

Big update on on going work related to data distribution and transfer between clients and servers.
Revisite of the source and store filter using "connectors".

-> inputs work again

YM

  • Property copyright set to
    Software name : XIOS (Xml I/O Server)
    http://forge.ipsl.jussieu.fr/ioserver
    Creation date : January 2009
    Licence : CeCCIL version2
    see license file in root directory : Licence_CeCILL_V2-en.txt
    or http://www.cecill.info/licences/Licence_CeCILL_V2-en.html
    Holder : CEA/LSCE (Laboratoire des Sciences du CLimat et de l'Environnement)
    CNRS/IPSL (Institut Pierre Simon Laplace)
    Project Manager : Yann Meurdesoif
    yann.meurdesoif@cea.fr
File size: 15.8 KB
Line 
1#ifndef __XIOS_CDomain__
2#define __XIOS_CDomain__
3
4/// XIOS headers ///
5#include "xios_spl.hpp"
6#include "group_factory.hpp"
7
8#include "declare_group.hpp"
9#include "declare_ref_func.hpp"
10#include "event_client.hpp"
11#include "event_server.hpp"
12#include "buffer_in.hpp"
13#include "array_new.hpp"
14#include "attribute_array.hpp"
15#include "attribute_enum.hpp"
16#include "transformation.hpp"
17#include "transformation_enum.hpp"
18#include "server_distribution_description.hpp"
19#include "mesh.hpp"
20#include "element.hpp"
21#include "local_connector.hpp"
22#include "scatterer_connector.hpp"
23#include "gatherer_connector.hpp"
24#include "distribution_type.hpp"
25
26
27namespace xios {
28
29   /// ////////////////////// Déclarations ////////////////////// ///
30
31   class CDomainGroup;
32   class CDomainAttributes;
33   class CDomain;
34   class CFile;
35
36   ///--------------------------------------------------------------
37
38   // Declare/Define CDomainAttribute
39   BEGIN_DECLARE_ATTRIBUTE_MAP(CDomain)
40#  include "domain_attribute.conf"
41#  include "domain_attribute_private.conf"
42   END_DECLARE_ATTRIBUTE_MAP(CDomain)
43
44   ///--------------------------------------------------------------
45
46   class CDomain
47      : public CObjectTemplate<CDomain>
48      , public CDomainAttributes
49   {
50     /// typedef ///
51     typedef CObjectTemplate<CDomain>   SuperClass;
52     typedef CDomainAttributes SuperClassAttribute;
53     public:
54         enum EEventId
55         {
56           EVENT_ID_INDEX, EVENT_ID_LON, EVENT_ID_LAT, 
57           EVENT_ID_AREA,
58           EVENT_ID_DATA_INDEX, EVENT_ID_SERVER_ATTRIBUT,
59           EVENT_ID_DOMAIN_DISTRIBUTION, EVENT_ID_SEND_DISTRIBUTED_ATTRIBUTE
60         } ;
61
62      public:
63
64         typedef CDomainAttributes RelAttributes;
65         typedef CDomainGroup      RelGroup;
66         typedef CTransformation<CDomain>::TransformationMapTypes TransMapTypes;
67
68         /// Constructeurs ///
69         CDomain(void);
70         explicit CDomain(const StdString & id);
71         CDomain(const CDomain & domain);       // Not implemented yet.
72         CDomain(const CDomain * const domain); // Not implemented yet.
73
74         static CDomain* createDomain();
75         
76         CMesh* mesh;
77         void assignMesh(const StdString, const int);
78       
79         virtual void parse(xml::CXMLNode & node);
80
81         void setContextClient(CContextClient* contextClient);
82
83         /// Vérifications ///
84         void checkAttributes(void);
85         bool checkAttributes_done_ = false ;
86
87         void checkAttributesOnClient();
88         void checkAttributesOnClientAfterTransformation();
89         void checkEligibilityForCompressedOutput(void);
90
91         void sendCheckedAttributes();
92
93         bool hasTransformation();
94         void solveInheritanceTransformation();
95         TransMapTypes getAllTransformations();
96         void redistribute(int nbLocalDomain);
97         void duplicateTransformation(CDomain*);
98         CTransformation<CDomain>* addTransformation(ETranformationType transType, const StdString& id="");
99
100      public:
101         const std::set<StdString> & getRelFiles(void) const;
102         bool IsWritten(const StdString & filename) const;
103         bool isWrittenCompressed(const StdString& filename) const;
104         
105         int getNumberWrittenIndexes(MPI_Comm writtenCom);
106         int getTotalNumberWrittenIndexes(MPI_Comm writtenCom);
107         int getOffsetWrittenIndexes(MPI_Comm writtenCom);
108         CArray<int,1>& getCompressedIndexToWriteOnServer(MPI_Comm writtenCom);
109
110         std::map<int, StdSize> getAttributesBufferSize(CContextClient* client, bool bufferForWriting = false);
111
112         bool isEmpty(void) const;
113         bool isDistributed(void) const;
114         bool isCompressible(void) const; 
115 
116         std::vector<int> getNbGlob();
117         bool isEqual(CDomain* domain);
118
119         static bool dispatchEvent(CEventServer& event);
120     
121      private:
122         /** define if the domain is completed or not ie all attributes have been received before in case
123             of grid reading from file or coupling */ 
124         bool isCompleted_=true ; 
125      public:     
126        /*!
127           \brief Check if a domain is completed
128           Before make any domain processing, we must be sure that all domain informations have
129           been sent, for exemple when reading a grid in a file or when grid elements are sent by an
130           other context (coupling). So all direct reference of the domain (domain_ref) must be also completed
131           \return true if domain and domain reference are completed
132          */
133         bool isCompleted(void)
134         {
135           if (hasDirectDomainReference()) if (!getDirectDomainReference()->isCompleted()) return false;
136           else return isCompleted_ ;
137         }
138         void setCompleted(void) { isCompleted_=true ; }
139         void unsetCompleted(void) { isCompleted_=false ; }
140
141      public:
142         /// Mutateur ///
143         void addRelFile(const StdString & filename);
144         void addRelFileCompressed(const StdString& filename);           
145         
146         void computeWrittenIndex();
147         void computeWrittenCompressedIndex(MPI_Comm);
148
149         void AllgatherRectilinearLonLat(CArray<double,1>& lon, CArray<double,1>& lat,
150                                         CArray<double,1>& lon_g, CArray<double,1>& lat_g);
151
152         void fillInRectilinearBoundLonLat(CArray<double,1>& lon, CArray<double,1>& lat,
153                                           CArray<double,2>& boundsLon, CArray<double,2>& boundsLat);
154         
155         void fillInLonLat();
156         bool distributionAttributesHaveValue() const;
157
158         size_t getGlobalWrittenSize() ;
159         /// Destructeur ///
160         virtual ~CDomain(void);
161
162         /// Accesseurs statiques ///
163         static StdString GetName(void);
164         static StdString GetDefName(void);
165
166         static ENodeType GetType(void);       
167
168      public:
169         CArray<double, 1> lonvalue, latvalue;
170         CArray<double, 2> bounds_lonvalue, bounds_latvalue;
171         CArray<double, 1> areavalue;
172
173         CArray<int,1> localIndexToWriteOnServer;
174
175         CArray<bool, 1> domainMask; // mask_1d, mask_2d -> domainMask
176         CArray<bool, 1> localMask; // domainMask + indexing
177         bool isCurvilinear ;
178         bool hasBounds ;
179         bool hasArea;
180         bool hasLonLat;
181         bool hasPole ;
182         bool hasLatInReadFile_ ; // specify if latitude is defined on read file, so it can be read later when grid distribution will be defined
183         bool hasBoundsLatInReadFile_ ; // specify if latitude boundarues are defined on read file, so it can be read later when grid distribution will be defined
184         bool hasLonInReadFile_ ; // specify if longitude is defined on read file, so it can be read later when grid distribution will be defined
185         bool hasBoundsLonInReadFile_ ; // specify if longitude boundaries are defined on read file, so it can be read later when grid distribution will be defined
186
187         void computeLocalMask(void) ;
188     
189         void computeConnectedClients(CContextClient* client); 
190         private: std::set<CContextClient*> computeConnectedClients_done_; public:
191         /** The number of server of a context client. Avoid to re-compute indice computed in a previous computeConnectedClient */
192         private: std::set<int> listNbServer_ ; public:
193         
194      private:
195         void checkDomain(void);
196         void checkLocalIDomain(void);
197         void checkLocalJDomain(void);
198
199         void checkMask(void);
200         void checkDomainData(void);
201         void checkCompression(void);
202
203         void checkBounds(void);
204         void checkArea(void);
205         void checkLonLat();
206
207         void setTransformations(const TransMapTypes&);         
208         void computeNGlobDomain();
209         
210       public:
211         void sendDomainToFileServer(CContextClient* client) ;
212       private:
213         std::set<CContextClient*> sendDomainToFileServer_done_ ;
214       private:
215         public:
216         void sendDomainToCouplerOut(CContextClient* client, const string& fieldId, int posInGrid) ;
217       private:
218         std::set<CContextClient*> sendDomainToCouplerOut_done_ ;
219     
220       public:
221        void makeAliasForCoupling(const string& fieldId, int posInGrid) ;
222
223       private:
224
225         void sendDomainDistribution(CContextClient* client, const string& domainId="") ; //for testing
226         void sendAttributes(); // ym obsolete -> to be removed
227         void sendIndex(CContextClient* client, const string& domainId="");
228         void sendDistributionAttributes(CContextClient* client, const string& domainId="");
229         void sendArea(CContextClient* client, const string& domainId="");
230         void sendLonLat(CContextClient* client, const string& domainId="");         
231         void sendDataIndex(CContextClient* client, const string& domainId="");
232         void convertLonLatValue();
233         void fillInRectilinearLonLat();
234         void fillInCurvilinearLonLat();
235         void fillInUnstructuredLonLat();
236         
237         static void recvDistributionAttributes(CEventServer& event);
238         static void recvIndex(CEventServer& event);
239         static void recvLon(CEventServer& event);
240         static void recvLat(CEventServer& event);
241         static void recvArea(CEventServer& event);
242         static void recvDataIndex(CEventServer& event);
243         void recvDistributionAttributes(CBufferIn& buffer);                 
244         void recvIndex(std::map<int, CBufferIn*>& rankBuffers);         
245         void recvLon(std::map<int, CBufferIn*>& rankBuffers);
246         void recvLat(std::map<int, CBufferIn*>& rankBuffers);
247         void recvArea(std::map<int, CBufferIn*>& rankBuffers);         
248         void recvDataIndex(std::map<int, CBufferIn*>& rankBuffers);
249
250         void completeLonLatClient(void); 
251         
252         
253       private:         
254
255/** Clients that have to send a domain. There can be multiple clients in case of secondary server, otherwise only one client. */
256         std::list<CContextClient*> clients;
257         std::set<CContextClient*> clientsSet;
258
259         bool isChecked, computedWrittenIndex_;
260         std::set<StdString> relFiles, relFilesCompressed;
261         bool isClientChecked; // Verify whether all attributes of domain on the client side are good
262         bool isClientAfterTransformationChecked;
263
264/** global index of the domain on server side, sent by the clients. This is global index for lon, lat, mask elements (ie non masked elements)
265    indGlobs_[rank] -> array of global index received from the client of rank "rank"
266    indGlobs[rank](ind) -> global indices of the "ind" element sent.
267    Defined only on server side
268*/
269         std::map<int, CArray<int,1> > indGlob_;
270
271/** only on client sided : defined the number of clients which participate to a message sent to a server for longitude, lat, area, etc. attributes
272    nbSender[nbServers] --> first map is related to the server distribution (ie associated with the contextClient)
273    nbSenders[nbServers][server_rank]-> return the number of participants of a message sent to the server of rank "server_rank"
274*/
275         std::map<int, map<int,int> > nbSenders; 
276
277/** only on client side : Global index of each client sent to server: map<serverSize, map<serverRank, indexes>>
278    indSrv_[nbServers] -->  first map is related to the server distribution (ie associated with the contextClient)
279    indSrv_[nbServers][server_rank] -> array of global index sent to the server of rank "server_rank"
280    indSrv_[nbServers][server_rank](ind) --> global index on server of the local element "ind" sent (for lon, lat, mask, etc...)
281*/
282         std::map<int, std::unordered_map<int, vector<size_t> > > indSrv_;
283         
284 /** make the mapping between the global index (the key) and the local index
285     globalLocalIndexMap_[global_index] --> get the local index
286 */       
287         std::unordered_map<size_t,size_t> globalLocalIndexMap_;
288
289
290/** only on server side : get the rank of each clients which participate to a received message
291*   recvClientRanks_[num_receiver] : client rank of the receiver "num_receiver"
292*/
293         std::vector<int> recvClientRanks_;
294
295         std::map<int,int> numberWrittenIndexes_, totalNumberWrittenIndexes_, offsetWrittenIndexes_;
296         std::map<int, CArray<int, 1> > compressedIndexToWriteOnServer;     
297         std::map<int, std::vector<int> > connectedServerRank_;
298
299         //! True if and only if the data defined on the domain can be outputted in a compressed way
300         bool isCompressible_;
301         bool isRedistributed_;
302         TransMapTypes transformationMap_;         
303         bool isUnstructed_;
304
305       
306       private:
307         static bool initializeTransformationMap(std::map<StdString, ETranformationType>& m);
308         static std::map<StdString, ETranformationType> transformationMapList_;
309         static bool _dummyTransformationMapList;
310
311       //////////////////////////////////////////////////////////////////////////////////////
312       //  this part is related to distribution, element definition, views and connectors  //
313       //////////////////////////////////////////////////////////////////////////////////////
314       private:
315         CLocalElement* localElement_ = nullptr ;
316         void initializeLocalElement(void) ;
317       
318       public: 
319         CLocalElement* getLocalElement(void) { if (localElement_==nullptr) initializeLocalElement() ; return localElement_ ; }
320         CLocalView* getLocalView(CElementView::type type) { return getLocalElement()->getView(type) ;}
321       
322       private: 
323         void addFullView(void) ;
324         void addWorkflowView(void) ;
325         void addModelView(void) ;
326       
327       private:
328         CLocalConnector* modelToWorkflowConnector_ ;
329         void computeModelToWorkflowConnector(void)  ;
330       public:
331         CLocalConnector* getModelToWorkflowConnector(void) { if (modelToWorkflowConnector_==nullptr) computeModelToWorkflowConnector() ; return modelToWorkflowConnector_ ;}
332
333       public:
334         void computeRemoteElement(CContextClient* client, EDistributionType) ;
335         void distributeToServer(CContextClient* client, std::map<int, CArray<size_t,1>>& globalIndex, const string& domainId="") ;
336
337         static void recvDomainDistribution(CEventServer& event) ;
338         void receivedDomainDistribution(CEventServer& event, int phasis) ;
339
340         void sendDistributedAttributes(CContextClient* client, CScattererConnector& scaterrerConnector, const string& domainId) ;
341         static void recvDistributedAttributes(CEventServer& event) ;
342         void recvDistributedAttributes(CEventServer& event, const string& type) ;
343       private:
344         map<CContextClient*, CDistributedElement*> remoteElement_ ;
345       public: 
346         CDistributedElement* getRemoteElement(CContextClient* client) {return remoteElement_[client] ;}
347       private:
348         map<CContextClient*, CScattererConnector*> clientToServerConnector_ ;
349       public: 
350         CScattererConnector* getClientToServerConnector(CContextClient* client) { return clientToServerConnector_[client] ;}
351       
352       private:
353         CGathererConnector*  gathererConnector_ ;
354         CGathererConnector* serverFromClientConnector_ ;
355         CDistributedElement* elementFrom_ ;
356       public:
357         CGathererConnector* getServerFromClientConnector(void) { return serverFromClientConnector_ ;}
358
359       private:
360         CScattererConnector*  serverToClientConnector_ = nullptr ;
361       public: 
362         CScattererConnector* getServerToClientConnector(void) { return serverToClientConnector_ ;} 
363
364       private:
365         map<CContextClient*,CGathererConnector*>  clientFromServerConnector_  ;
366       public: 
367         CGathererConnector* getClientFromServerConnector(CContextClient* client) { return clientFromServerConnector_[client] ;}       
368         
369
370         DECLARE_REF_FUNC(Domain,domain)
371
372   }; // class CDomain
373
374   ///--------------------------------------------------------------
375
376   // Declare/Define CDomainGroup and CDomainDefinition
377   DECLARE_GROUP(CDomain);
378
379   ///--------------------------------------------------------------
380
381} // namespace xios
382
383#endif //__XIOS_CDomain__
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