1 | #ifndef __XIOS_CGrid__ |
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2 | #define __XIOS_CGrid__ |
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3 | |
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4 | /// XIOS headers /// |
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5 | #include "xios_spl.hpp" |
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6 | #include "group_factory.hpp" |
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7 | |
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8 | #include "declare_group.hpp" |
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9 | #include "domain.hpp" |
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10 | #include "axis.hpp" |
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11 | #include "scalar.hpp" |
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12 | #include "array_new.hpp" |
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13 | #include "attribute_array.hpp" |
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14 | #include "distribution_server.hpp" |
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15 | #include "client_server_mapping.hpp" |
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16 | #include "utils.hpp" |
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17 | #include "transformation_enum.hpp" |
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18 | |
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19 | namespace xios { |
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20 | |
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21 | /// ////////////////////// Declarations ////////////////////// /// |
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22 | |
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23 | class CGridGroup; |
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24 | class CGridAttributes; |
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25 | class CDomainGroup; |
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26 | class CAxisGroup; |
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27 | class CScalarGroup; |
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28 | class CGrid; |
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29 | class CDistributionClient; |
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30 | class CDistributionServer; |
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31 | class CServerDistributionDescription; |
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32 | class CClientServerMapping; |
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33 | class CGridTransformation; |
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34 | |
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35 | ///-------------------------------------------------------------- |
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36 | |
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37 | // Declare/Define CGridAttribute |
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38 | BEGIN_DECLARE_ATTRIBUTE_MAP(CGrid) |
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39 | # include "grid_attribute.conf" |
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40 | END_DECLARE_ATTRIBUTE_MAP(CGrid) |
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41 | |
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42 | ///-------------------------------------------------------------- |
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43 | |
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44 | class CGrid |
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45 | : public CObjectTemplate<CGrid> |
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46 | , public CGridAttributes |
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47 | { |
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48 | /// typedef /// |
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49 | typedef CObjectTemplate<CGrid> SuperClass; |
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50 | typedef CGridAttributes SuperClassAttribute; |
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51 | |
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52 | public: |
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53 | |
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54 | typedef CGridAttributes RelAttributes; |
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55 | typedef CGridGroup RelGroup; |
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56 | |
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57 | enum EEventId |
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58 | { |
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59 | EVENT_ID_INDEX, EVENT_ID_ADD_DOMAIN, EVENT_ID_ADD_AXIS, EVENT_ID_ADD_SCALAR |
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60 | }; |
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61 | |
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62 | /// Constructeurs /// |
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63 | CGrid(void); |
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64 | explicit CGrid(const StdString& id); |
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65 | CGrid(const CGrid& grid); // Not implemented yet. |
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66 | CGrid(const CGrid* const grid); // Not implemented yet. |
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67 | |
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68 | /// Traitements /// |
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69 | // void solveReference(void); |
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70 | |
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71 | void checkEligibilityForCompressedOutput(); |
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72 | |
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73 | void solveDomainAxisRef(bool areAttributesChecked); |
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74 | |
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75 | void checkMaskIndex(bool doCalculateIndex); |
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76 | |
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77 | // virtual void toBinary (StdOStream& os) const; |
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78 | // virtual void fromBinary(StdIStream& is); |
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79 | |
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80 | void addRelFileCompressed(const StdString& filename); |
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81 | |
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82 | /// Tests /// |
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83 | bool isCompressible(void) const; |
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84 | bool isWrittenCompressed(const StdString& filename) const; |
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85 | |
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86 | public: |
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87 | |
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88 | /// Accesseurs /// |
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89 | StdSize getDimension(void); |
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90 | |
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91 | StdSize getDataSize(void) const; |
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92 | |
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93 | /// Entrees-sorties de champs |
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94 | template <int n> |
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95 | void inputField(const CArray<double,n>& field, CArray<double,1>& stored) const; |
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96 | template <int n> |
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97 | void maskField(const CArray<double,n>& field, CArray<double,1>& stored) const; |
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98 | template <int n> |
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99 | void outputField(const CArray<double,1>& stored, CArray<double,n>& field) const; |
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100 | template <int n> |
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101 | void uncompressField(const CArray<double,n>& data, CArray<double,1>& outData) const; |
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102 | |
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103 | virtual void parse(xml::CXMLNode& node); |
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104 | |
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105 | /// Destructeur /// |
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106 | virtual ~CGrid(void); |
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107 | |
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108 | public: |
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109 | |
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110 | /// Accesseurs statiques /// |
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111 | static StdString GetName(void); |
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112 | static StdString GetDefName(void); |
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113 | |
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114 | static ENodeType GetType(void); |
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115 | |
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116 | /// Instanciateurs Statiques /// |
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117 | static CGrid* createGrid(CDomain* domain); |
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118 | static CGrid* createGrid(CDomain* domain, CAxis* axis); |
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119 | static CGrid* createGrid(const std::vector<CDomain*>& domains, const std::vector<CAxis*>& axis, |
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120 | const CArray<int,1>& axisDomainOrder = CArray<int,1>()); |
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121 | static CGrid* createGrid(StdString id, const std::vector<CDomain*>& domains, const std::vector<CAxis*>& axis, |
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122 | const std::vector<CScalar*>& scalars, const CArray<int,1>& axisDomainOrder = CArray<int,1>()); |
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123 | static CGrid* createGrid(const std::vector<CDomain*>& domains, const std::vector<CAxis*>& axis, |
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124 | const std::vector<CScalar*>& scalars, const CArray<int,1>& axisDomainOrder); |
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125 | static StdString generateId(const std::vector<CDomain*>& domains, const std::vector<CAxis*>& axis, |
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126 | const std::vector<CScalar*>& scalars, const CArray<int,1>& axisDomainOrder = CArray<int,1>()); |
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127 | static StdString generateId(const CGrid* gridSrc, const CGrid* gridDest); |
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128 | static CGrid* cloneGrid(const StdString& idNewGrid, CGrid* gridSrc); |
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129 | |
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130 | public: |
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131 | void computeIndexServer(void); |
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132 | void computeIndex(void); |
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133 | void computeIndexScalarGrid(); |
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134 | void computeWrittenIndex(); |
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135 | |
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136 | void solveDomainRef(bool checkAtt); |
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137 | void solveAxisRef(bool checkAtt); |
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138 | void solveScalarRef(bool checkAtt); |
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139 | void solveDomainAxisRefInheritance(bool apply = true); |
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140 | void solveTransformations(); |
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141 | void solveDomainAxisBaseRef(); |
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142 | |
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143 | CDomain* addDomain(const std::string& id=StdString()); |
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144 | CAxis* addAxis(const std::string& id=StdString()); |
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145 | CScalar* addScalar(const std::string& id=StdString()); |
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146 | void sendAddDomain(const std::string& id,CContextClient* contextClient); |
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147 | void sendAddAxis(const std::string& id,CContextClient* contextClient); |
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148 | void sendAddScalar(const std::string& id,CContextClient* contextClient); |
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149 | void sendAllDomains(CContextClient* contextClient); |
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150 | void sendAllAxis(CContextClient* contextClient); |
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151 | void sendAllScalars(CContextClient* contextClient); |
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152 | |
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153 | static void recvAddDomain(CEventServer& event); |
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154 | void recvAddDomain(CBufferIn& buffer); |
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155 | static void recvAddAxis(CEventServer& event); |
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156 | void recvAddAxis(CBufferIn& buffer); |
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157 | static void recvAddScalar(CEventServer& event); |
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158 | void recvAddScalar(CBufferIn& buffer); |
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159 | |
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160 | static bool dispatchEvent(CEventServer& event); |
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161 | static void recvIndex(CEventServer& event); |
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162 | void recvIndex(vector<int> ranks, vector<CBufferIn*> buffers, CContextServer* server); |
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163 | void sendIndex(void); |
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164 | void sendIndexScalarGrid(); |
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165 | |
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166 | void setContextClient(CContextClient* contextClient); |
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167 | |
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168 | void computeDomConServer(); |
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169 | std::map<int, int> getDomConServerSide(); |
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170 | std::map<int, StdSize> getAttributesBufferSize(CContextClient* client, bool bufferForWriting = false); |
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171 | std::map<int, StdSize> getDataBufferSize(CContextClient* client, const std::string& id = "", bool bufferForWriting = false); |
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172 | std::vector<StdString> getDomainList(); |
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173 | std::vector<StdString> getAxisList(); |
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174 | std::vector<StdString> getScalarList(); |
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175 | std::vector<CDomain*> getDomains(); |
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176 | std::vector<CAxis*> getAxis(); |
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177 | std::vector<CScalar*> getScalars(); |
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178 | CDomain* getDomain(int domainIndex); |
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179 | CAxis* getAxis(int axisIndex); |
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180 | CScalar* getScalar(int scalarIndex); |
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181 | std::vector<int> getAxisOrder(); |
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182 | std::vector<int> getGlobalDimension(); |
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183 | bool isScalarGrid() const; |
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184 | |
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185 | bool doGridHaveDataToWrite(); |
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186 | bool doGridHaveDataDistributed(CContextClient* client = 0); |
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187 | size_t getWrittenDataSize() const; |
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188 | int getNumberWrittenIndexes() const; |
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189 | int getTotalNumberWrittenIndexes() const; |
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190 | int getOffsetWrittenIndexes() const; |
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191 | |
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192 | CDistributionServer* getDistributionServer(); |
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193 | CDistributionClient* getDistributionClient(); |
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194 | CGridTransformation* getTransformations(); |
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195 | |
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196 | void transformGrid(CGrid* transformGridSrc); |
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197 | void completeGrid(CGrid* transformGridSrc = 0); |
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198 | void doAutoDistribution(CGrid* transformGridSrc); |
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199 | bool isTransformed(); |
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200 | void setTransformed(); |
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201 | bool isGenerated(); |
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202 | void setGenerated(); |
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203 | void addTransGridSource(CGrid* gridSrc); |
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204 | std::map<CGrid*, std::pair<bool,StdString> >& getTransGridSource(); |
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205 | bool hasTransform(); |
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206 | size_t getGlobalWrittenSize(void) ; |
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207 | |
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208 | bool hasMask(void) const; |
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209 | void checkMask(void); |
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210 | void createMask(void); |
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211 | void modifyMask(const CArray<int,1>& indexToModify, bool valueToModify = false); |
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212 | void modifyMaskSize(const std::vector<int>& newDimensionSize, bool newValue = false); |
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213 | |
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214 | void computeGridGlobalDimension(const std::vector<CDomain*>& domains, |
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215 | const std::vector<CAxis*>& axis, |
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216 | const std::vector<CScalar*>& scalars, |
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217 | const CArray<int,1>& axisDomainOrder); |
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218 | |
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219 | private: |
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220 | template<int N> |
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221 | void checkGridMask(CArray<bool,N>& gridMask, |
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222 | const std::vector<CArray<bool,1>* >& domainMasks, |
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223 | const std::vector<CArray<bool,1>* >& axisMasks, |
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224 | const CArray<int,1>& axisDomainOrder, |
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225 | bool createMask = false); |
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226 | template<int N> |
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227 | void modifyGridMask(CArray<bool,N>& gridMask, const CArray<int,1>& indexToModify, bool valueToModify); |
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228 | |
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229 | template<int N> |
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230 | void modifyGridMaskSize(CArray<bool,N>& gridMask, const std::vector<int>& eachDimSize, bool newValue); |
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231 | |
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232 | void storeField_arr(const double* const data, CArray<double, 1>& stored) const; |
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233 | void restoreField_arr(const CArray<double, 1>& stored, double* const data) const; |
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234 | void uncompressField_arr(const double* const data, CArray<double, 1>& outData) const; |
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235 | void maskField_arr(const double* const data, CArray<double, 1>& stored) const; |
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236 | |
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237 | void setVirtualDomainGroup(CDomainGroup* newVDomainGroup); |
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238 | void setVirtualAxisGroup(CAxisGroup* newVAxisGroup); |
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239 | void setVirtualScalarGroup(CScalarGroup* newVScalarGroup); |
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240 | |
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241 | void setDomainList(const std::vector<CDomain*> domains = std::vector<CDomain*>()); |
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242 | void setAxisList(const std::vector<CAxis*> axis = std::vector<CAxis*>()); |
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243 | void setScalarList(const std::vector<CScalar*> scalars = std::vector<CScalar*>()); |
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244 | |
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245 | CDomainGroup* getVirtualDomainGroup() const; |
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246 | CAxisGroup* getVirtualAxisGroup() const; |
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247 | CScalarGroup* getVirtualScalarGroup() const; |
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248 | |
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249 | void checkAttributesAfterTransformation(); |
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250 | void setTransformationAlgorithms(); |
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251 | void computeIndexByElement(const std::vector<std::unordered_map<size_t,std::vector<int> > >& indexServerOnElement, |
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252 | const CContextClient* client, |
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253 | CClientServerMapping::GlobalIndexMap& globalIndexOnServer); |
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254 | int computeGridGlobalDimension(std::vector<int>& globalDim, |
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255 | const std::vector<CDomain*> domains, |
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256 | const std::vector<CAxis*> axis, |
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257 | const std::vector<CScalar*> scalars, |
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258 | const CArray<int,1>& axisDomainOrder); |
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259 | int getDistributedDimension(); |
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260 | |
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261 | void computeClientIndex(); |
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262 | void computeConnectedClients(); |
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263 | void computeClientIndexScalarGrid(); |
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264 | void computeConnectedClientsScalarGrid(); |
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265 | |
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266 | |
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267 | public: |
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268 | /** Array containing the local index of the grid |
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269 | * storeIndex_client[local_workflow_grid_index] -> local_model_grid_index. |
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270 | * Used to store field from model into the worklow, or to return field into models. |
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271 | * The size of the array is the number of local index of the workflow grid */ |
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272 | CArray<int, 1> storeIndex_client_; |
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273 | |
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274 | /** Array containing the grid mask masked defined by the mask_nd grid attribute. |
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275 | * The corresponding masked field value provided by the model will be replaced by a NaN value |
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276 | * in the workflow. */ |
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277 | CArray<bool, 1> storeMask_client_; |
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278 | |
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279 | /** Map containing the indexes on client side that will be sent to each connected server. |
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280 | * storeIndex_toSrv[&contextClient] -> map concerning the contextClient for which the data will be sent (client side) |
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281 | * storeIndex_toSrv[&contextClient][rank] -> array of indexes that will be sent to each "rank" of the connected servers |
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282 | * storeIndex_toSrv[&contextClient][rank](index_of_buffer_sent_to_server) -> local index of the field of the workflow |
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283 | * grid that will be sent to server */ |
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284 | std::map<CContextClient*, map<int, CArray<int, 1> > > storeIndex_toSrv_; |
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285 | |
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286 | |
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287 | /** Map containing the indexes on client side that will be received from each connected server. |
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288 | * This map is used to agreggate field data received from server (for reading) into a single array, which will be an entry |
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289 | * point of the worklow on client side. |
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290 | * storeIndex_toSrv[rank] -> array of indexes that will be received from each "rank" of the connected servers |
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291 | * storeIndex_toSrv[rank](index_of_buffer_received_from_server) -> local index of the field in the "workflow grid" |
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292 | * that has been received from server */ |
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293 | std::map<int, CArray<int, 1> > storeIndex_fromSrv_; // Support, for now, reading with level-1 server |
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294 | |
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295 | |
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296 | /** Maps storing the number of participating clients for data sent a specific server for a given contextClient, identified |
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297 | * by the servers communicator size. In future must be direcly identified by context. |
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298 | * nbSender_[context_server_size] -> map the number of client sender by connected rank of servers |
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299 | * nbSender_[context_server_size] [rank_server] -> the number of client participating to a send message for a server of rank "rank_server" |
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300 | * Usefull to indicate in a message the number of participant needed by the transfer protocol */ |
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301 | std::map<int, std::map<int,int> > nbSenders_; |
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302 | |
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303 | |
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304 | /** Maps storing the number of participating servers for data sent a specific client for a given contextClient. |
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305 | * Symetric of nbSenders_, but for server side which want to send data to client. |
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306 | * nbReadSender_[context_client_size] -> map the number of server sender by connected rank of clients |
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307 | * nbReadSender_[context_client_size] [rank_client] -> the number of serverq participating to a send message for a client of rank "rank_client" |
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308 | * Usefull to indicate in a message the number of participant needed by the transfer protocol */ |
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309 | std::map<CContextClient*, std::map<int,int> > nbReadSenders_; |
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310 | |
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311 | |
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312 | // Manh Ha's comment: " A client receives global index from other clients (via recvIndex) |
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313 | // then does mapping these index into local index of STORE_CLIENTINDEX |
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314 | // In this way, store_clientIndex can be used as an input of a source filter |
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315 | // Maybe we need a flag to determine whether a client wants to write. TODO " |
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316 | |
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317 | /** Map storing received data on server side. This map is the equivalent to the storeIndex_client, but for data received from client |
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318 | * instead that from model. This map is used to concatenate data received from several clients into a single array on server side |
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319 | * which match the local workflow grid. |
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320 | * outLocalIndexStoreOnClient_[client_rank] -> Array of index from client of rank "client_rank" |
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321 | * outLocalIndexStoreOnClient_[client_rank](index of buffer from client) -> local index of the workflow grid |
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322 | * The map is created in CGrid::computeClientIndex and filled upon receiving data in CField::recvUpdateData(). |
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323 | * Symetrically it is also used to send data from a server to several client for reading case. */ |
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324 | map<int, CArray<size_t, 1> > outLocalIndexStoreOnClient_; |
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325 | |
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326 | |
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327 | /** Indexes calculated based on server-like distribution. |
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328 | * They are used for writing/reading data and only calculated for server level that does the writing/reading. |
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329 | * Along with localIndexToWriteOnClient, these indexes are used to correctly place incoming data. |
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330 | * size of the array : numberWrittenIndexes_ : number of index written in a compressed way |
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331 | * localIndexToWriteOnServer_(compressed_written_index) : -> local uncompressed index that will be written in the file */ |
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332 | CArray<size_t,1> localIndexToWriteOnServer_; |
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333 | |
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334 | /** Indexes calculated based on client-like distribution. |
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335 | * They are used for writing/reading data and only calculated for server level that does the writing/reading. |
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336 | * Along with localIndexToWriteOnServer, these indexes are used to correctly place incoming data. |
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337 | * size of the array : numberWrittenIndexes_ |
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338 | * localIndexToWriteOnClient_(compressed_written_index) -> local index of the workflow grid*/ |
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339 | CArray<size_t,1> localIndexToWriteOnClient_; |
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340 | |
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341 | private: |
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342 | |
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343 | /** Clients that have to send a grid. There can be multiple clients in case of secondary server, otherwise only one client. */ |
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344 | std::list<CContextClient*> clients; |
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345 | std::set<CContextClient*> clientsSet; |
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346 | |
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347 | /** Map storing received indexes on server side sent by clients. Key = sender rank, value = global index array. |
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348 | Later, the global indexes received will be mapped onto local index computed with the local distribution. |
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349 | outGlobalIndexFromClient_[rank] -> array of global index send by client of rank "rank" |
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350 | outGlobalIndexFromClient_[rank](n) -> global index of datav n sent by client |
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351 | */ |
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352 | map<int, CArray<size_t, 1> > outGlobalIndexFromClient_; |
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353 | |
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354 | bool isChecked; |
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355 | bool isDomainAxisChecked; |
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356 | bool isIndexSent; |
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357 | |
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358 | CDomainGroup* vDomainGroup_; |
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359 | CAxisGroup* vAxisGroup_; |
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360 | CScalarGroup* vScalarGroup_; |
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361 | std::vector<std::string> axisList_, domList_, scalarList_; |
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362 | bool isAxisListSet, isDomListSet, isScalarListSet; |
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363 | |
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364 | /** Client-like distribution calculated based on the knowledge of the entire grid */ |
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365 | CDistributionClient* clientDistribution_; |
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366 | |
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367 | /** Server-like distribution calculated upon receiving indexes */ |
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368 | CDistributionServer* serverDistribution_; |
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369 | |
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370 | CClientServerMapping* clientServerMap_; |
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371 | size_t writtenDataSize_; |
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372 | int numberWrittenIndexes_, totalNumberWrittenIndexes_, offsetWrittenIndexes_; |
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373 | |
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374 | /** Map storing local ranks of connected receivers. Key = size of receiver's intracomm. |
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375 | * It is calculated in computeConnectedClients(). */ |
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376 | std::map<int, std::vector<int> > connectedServerRank_; |
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377 | |
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378 | /** Map storing the size of data to be send. Key = size of receiver's intracomm |
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379 | * It is calculated in computeConnectedClients(). */ |
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380 | std::map<int, std::map<int,size_t> > connectedDataSize_; |
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381 | |
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382 | /** Ranks of connected receivers in case of reading. It is calculated in recvIndex(). */ |
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383 | std::vector<int> connectedServerRankRead_; |
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384 | |
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385 | /** Size of data to be send in case of reading. It is calculated in recvIndex(). */ |
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386 | std::map<int,size_t> connectedDataSizeRead_; |
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387 | |
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388 | bool isDataDistributed_; |
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389 | //! True if and only if the data defined on the grid can be outputted in a compressed way |
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390 | bool isCompressible_; |
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391 | std::set<std::string> relFilesCompressed; |
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392 | |
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393 | bool isTransformed_, isGenerated_; |
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394 | bool computedWrittenIndex_; |
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395 | std::vector<int> axisPositionInGrid_; |
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396 | CGridTransformation* transformations_; |
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397 | bool hasDomainAxisBaseRef_; |
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398 | std::map<CGrid*, std::pair<bool,StdString> > gridSrc_; |
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399 | bool hasTransform_; |
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400 | |
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401 | /** Map storing global indexes of server-like (band-wise) distribution for sending to receivers (client side). |
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402 | * Key = size of receiver's intracomm (i.e. number of servers) |
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403 | * ~ map<int, umap<int, std::vector<size_t> >> globalIndexOnServer_ |
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404 | * globalIndexOnServer_[servers_size] -> map for a distribution of size "servers_size" (number of servers) |
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405 | * globalIndexOnServer_[servers_size][server_rank] -> array of global index managed by server of rank "server_rank" |
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406 | * globalIndexOnServer_[servers_size][server_rank][n] -> global index of data to be send to the server by client based on sub element of the grid. |
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407 | * -> grid masking is not included. |
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408 | */ |
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409 | // std::map<CContextClient*, CClientServerMapping::GlobalIndexMap> globalIndexOnServer_; |
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410 | std::map<int, CClientServerMapping::GlobalIndexMap> globalIndexOnServer_; |
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411 | |
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412 | |
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413 | /** List order of axis and domain in a grid, if there is a domain, it will take value 2, axis 1, scalar 0 */ |
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414 | std::vector<int> order_; |
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415 | |
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416 | }; // class CGrid |
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417 | |
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418 | ///-------------------------------------------------------------- |
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419 | |
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420 | template <int n> |
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421 | void CGrid::inputField(const CArray<double,n>& field, CArray<double,1>& stored) const |
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422 | TRY |
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423 | { |
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424 | //#ifdef __XIOS_DEBUG |
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425 | if (this->getDataSize() != field.numElements()) |
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426 | ERROR("void CGrid::inputField(const CArray<double,n>& field, CArray<double,1>& stored) const", |
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427 | << "[ Awaiting data of size = " << this->getDataSize() << ", " |
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428 | << "Received data size = " << field.numElements() << " ] " |
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429 | << "The data array does not have the right size! " |
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430 | << "Grid = " << this->getId()) |
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431 | //#endif |
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432 | this->storeField_arr(field.dataFirst(), stored); |
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433 | } |
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434 | CATCH |
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435 | |
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436 | template <int n> |
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437 | void CGrid::maskField(const CArray<double,n>& field, CArray<double,1>& stored) const |
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438 | { |
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439 | //#ifdef __XIOS_DEBUG |
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440 | if (this->getDataSize() != field.numElements()) |
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441 | ERROR("void CGrid::inputField(const CArray<double,n>& field, CArray<double,1>& stored) const", |
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442 | << "[ Awaiting data of size = " << this->getDataSize() << ", " |
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443 | << "Received data size = " << field.numElements() << " ] " |
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444 | << "The data array does not have the right size! " |
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445 | << "Grid = " << this->getId()) |
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446 | //#endif |
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447 | this->maskField_arr(field.dataFirst(), stored); |
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448 | } |
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449 | |
---|
450 | template <int n> |
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451 | void CGrid::outputField(const CArray<double,1>& stored, CArray<double,n>& field) const |
---|
452 | TRY |
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453 | { |
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454 | //#ifdef __XIOS_DEBUG |
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455 | if (this->getDataSize() != field.numElements()) |
---|
456 | ERROR("void CGrid::outputField(const CArray<double,1>& stored, CArray<double,n>& field) const", |
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457 | << "[ Size of the data = " << this->getDataSize() << ", " |
---|
458 | << "Output data size = " << field.numElements() << " ] " |
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459 | << "The ouput array does not have the right size! " |
---|
460 | << "Grid = " << this->getId()) |
---|
461 | //#endif |
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462 | this->restoreField_arr(stored, field.dataFirst()); |
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463 | } |
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464 | CATCH |
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465 | |
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466 | /*! |
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467 | This function removes the effect of mask on received data on the server. |
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468 | This function only serve for the checking purpose. TODO: Something must be done to seperate mask and data_index from each other in received data |
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469 | \data data received data with masking effect on the server |
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470 | \outData data without masking effect |
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471 | */ |
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472 | template <int N> |
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473 | void CGrid::uncompressField(const CArray<double,N>& data, CArray<double,1>& outData) const |
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474 | TRY |
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475 | { |
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476 | uncompressField_arr(data.dataFirst(), outData); |
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477 | } |
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478 | CATCH |
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479 | |
---|
480 | template<int N> |
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481 | void CGrid::checkGridMask(CArray<bool,N>& gridMask, |
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482 | const std::vector<CArray<bool,1>* >& domainMasks, |
---|
483 | const std::vector<CArray<bool,1>* >& axisMasks, |
---|
484 | const CArray<int,1>& axisDomainOrder, |
---|
485 | bool createMask) |
---|
486 | TRY |
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487 | { |
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488 | int idx = 0; |
---|
489 | int numElement = axisDomainOrder.numElements(); |
---|
490 | int dim = domainMasks.size() * 2 + axisMasks.size(); |
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491 | std::vector<CDomain*> domainP = this->getDomains(); |
---|
492 | std::vector<CAxis*> axisP = this->getAxis(); |
---|
493 | |
---|
494 | std::vector<int> idxLoop(dim,0), indexMap(numElement), eachDimSize(dim); |
---|
495 | std::vector<int> currentIndex(dim); |
---|
496 | int idxDomain = 0, idxAxis = 0; |
---|
497 | for (int i = 0; i < numElement; ++i) |
---|
498 | { |
---|
499 | indexMap[i] = idx; |
---|
500 | if (2 == axisDomainOrder(i)) { |
---|
501 | eachDimSize[indexMap[i]] = domainP[idxDomain]->ni; |
---|
502 | eachDimSize[indexMap[i]+1] = domainP[idxDomain]->nj; |
---|
503 | idx += 2; ++idxDomain; |
---|
504 | } |
---|
505 | else if (1 == axisDomainOrder(i)) { |
---|
506 | // eachDimSize[indexMap[i]] = axisMasks[idxAxis]->numElements(); |
---|
507 | eachDimSize[indexMap[i]] = axisP[idxAxis]->n; |
---|
508 | ++idx; ++idxAxis; |
---|
509 | } |
---|
510 | else {}; |
---|
511 | } |
---|
512 | |
---|
513 | if (!gridMask.isEmpty() && !createMask) |
---|
514 | { |
---|
515 | for (int i = 0; i < dim; ++i) |
---|
516 | { |
---|
517 | if (gridMask.extent(i) != eachDimSize[i]) |
---|
518 | ERROR("CGrid::checkMask(void)", |
---|
519 | << "The mask has one dimension whose size is different from the one of the local grid." << std::endl |
---|
520 | << "Local size of dimension " << i << " is " << eachDimSize[i] << "." << std::endl |
---|
521 | << "Mask size for dimension " << i << " is " << gridMask.extent(i) << "." << std::endl |
---|
522 | << "Grid = " << this->getId()) |
---|
523 | } |
---|
524 | } |
---|
525 | else { |
---|
526 | CArrayBoolTraits<CArray<bool,N> >::resizeArray(gridMask,eachDimSize); |
---|
527 | gridMask = true; |
---|
528 | } |
---|
529 | |
---|
530 | int ssize = gridMask.numElements(); |
---|
531 | idx = 0; |
---|
532 | while (idx < ssize) |
---|
533 | { |
---|
534 | for (int i = 0; i < dim-1; ++i) |
---|
535 | { |
---|
536 | if (idxLoop[i] == eachDimSize[i]) |
---|
537 | { |
---|
538 | idxLoop[i] = 0; |
---|
539 | ++idxLoop[i+1]; |
---|
540 | } |
---|
541 | } |
---|
542 | |
---|
543 | // Find out outer index |
---|
544 | idxDomain = idxAxis = 0; |
---|
545 | bool maskValue = true; |
---|
546 | for (int i = 0; i < numElement; ++i) |
---|
547 | { |
---|
548 | if (2 == axisDomainOrder(i)) |
---|
549 | { |
---|
550 | int idxTmp = idxLoop[indexMap[i]] + idxLoop[indexMap[i]+1] * eachDimSize[indexMap[i]]; |
---|
551 | if (idxTmp < (*domainMasks[idxDomain]).numElements()) |
---|
552 | maskValue = maskValue && (*domainMasks[idxDomain])(idxTmp); |
---|
553 | else |
---|
554 | maskValue = false; |
---|
555 | ++idxDomain; |
---|
556 | } |
---|
557 | else if (1 == axisDomainOrder(i)) |
---|
558 | { |
---|
559 | int idxTmp = idxLoop[indexMap[i]]; |
---|
560 | if (idxTmp < (*axisMasks[idxAxis]).numElements()) |
---|
561 | maskValue = maskValue && (*axisMasks[idxAxis])(idxTmp); |
---|
562 | else |
---|
563 | maskValue = false; |
---|
564 | |
---|
565 | ++idxAxis; |
---|
566 | } |
---|
567 | } |
---|
568 | |
---|
569 | int maskIndex = idxLoop[0]; |
---|
570 | int mulDim = 1; |
---|
571 | for (int k = 1; k < dim; ++k) |
---|
572 | { |
---|
573 | mulDim *= eachDimSize[k-1]; |
---|
574 | maskIndex += idxLoop[k]*mulDim; |
---|
575 | } |
---|
576 | *(gridMask.dataFirst()+maskIndex) &= maskValue; |
---|
577 | |
---|
578 | ++idxLoop[0]; |
---|
579 | ++idx; |
---|
580 | } |
---|
581 | } |
---|
582 | CATCH_DUMP_ATTR |
---|
583 | |
---|
584 | template<int N> |
---|
585 | void CGrid::modifyGridMaskSize(CArray<bool,N>& gridMask, |
---|
586 | const std::vector<int>& eachDimSize, |
---|
587 | bool newValue) |
---|
588 | TRY |
---|
589 | { |
---|
590 | if (N != eachDimSize.size()) |
---|
591 | { |
---|
592 | // ERROR("CGrid::modifyGridMaskSize(CArray<bool,N>& gridMask, |
---|
593 | // const std::vector<int>& eachDimSize, |
---|
594 | // bool newValue)", |
---|
595 | // << "Dimension size of the mask is different from input dimension size." << std::endl |
---|
596 | // << "Mask dimension is " << N << "." << std::endl |
---|
597 | // << "Input dimension is " << eachDimSize.size() << "." << std::endl |
---|
598 | // << "Grid = " << this->getId()) |
---|
599 | } |
---|
600 | CArrayBoolTraits<CArray<bool,N> >::resizeArray(gridMask,eachDimSize); |
---|
601 | gridMask = newValue; |
---|
602 | } |
---|
603 | CATCH_DUMP_ATTR |
---|
604 | |
---|
605 | |
---|
606 | /*! |
---|
607 | Modify the current mask of grid, the local index to be modified will take value false |
---|
608 | \param [in/out] gridMask current mask of grid |
---|
609 | \param [in] indexToModify local index to modify |
---|
610 | */ |
---|
611 | template<int N> |
---|
612 | void CGrid::modifyGridMask(CArray<bool,N>& gridMask, const CArray<int,1>& indexToModify, bool valueToModify) |
---|
613 | TRY |
---|
614 | { |
---|
615 | int num = indexToModify.numElements(); |
---|
616 | for (int idx = 0; idx < num; ++idx) |
---|
617 | { |
---|
618 | *(gridMask.dataFirst()+indexToModify(idx)) = valueToModify; |
---|
619 | } |
---|
620 | } |
---|
621 | CATCH_DUMP_ATTR |
---|
622 | |
---|
623 | ///-------------------------------------------------------------- |
---|
624 | |
---|
625 | |
---|
626 | |
---|
627 | // Declare/Define CGridGroup and CGridDefinition |
---|
628 | DECLARE_GROUP(CGrid); |
---|
629 | |
---|
630 | ///-------------------------------------------------------------- |
---|
631 | |
---|
632 | } // namespace xios |
---|
633 | |
---|
634 | #endif // __XIOS_CGrid__ |
---|