source: XIOS/trunk/doc/XIOS_reference_guide.lyx @ 714

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\begin_body

\begin_layout Title
XIOS Fortran Reference Guide
\end_layout

\begin_layout Author
Yann Meurdesoif
\end_layout

\begin_layout Chapter
Attribute reference
\end_layout

\begin_layout Section
Context attribute reference
\end_layout

\begin_layout Section
Calendar attribute reference
\end_layout

\begin_layout Subsection*
type: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
enumeration { Gregorian, Julian, D360, AllLeap, NoLeap, user_defined }
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: type
\end_layout

\begin_layout Standard
Define the calendar used for the current context.
 This attribute is mandatory and cannot be modified once it has been set.
\begin_inset Newline newline
\end_inset


\begin_inset Newline newline
\end_inset

When using the Fortran interface, this attribute must be defined using the
 following subroutine:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_define_calendar(type, timestep, start_date, time_origin,
\begin_inset Newline newline
\end_inset

                                day_length, month_lengths, year_length,
\begin_inset Newline newline
\end_inset

                                leap_year_month, leap_year_drift,
\begin_inset Newline newline
\end_inset

                                leap_year_drift_offset)
\end_layout

\begin_layout Subsection*
start_date: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
date
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
TYPE(xios_date) :: start_date
\end_layout

\begin_layout Standard
Define the start date of the simulation for the current context.
 This attribute is optional, the default value is 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout

\series bold
0000-01-01 00:00:00
\end_layout

\end_inset

.
 The 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
type
\end_layout

\end_inset

 attribute must always be set at the same time or before this attribute
 is defined.
\begin_inset Newline newline
\end_inset


\begin_inset Newline newline
\end_inset

A partial date is allowed in the configuration file as long as the omitted
 parts are at the end, in which case they are initialized as in the default
 value.
 Optionally an offset can be added to the date using the notation "
\emph on
+ duration
\emph default
".
 
\begin_inset Newline newline
\end_inset


\begin_inset Newline newline
\end_inset

When using the Fortran interface, this attribute can be defined at the same
 time as the calendar 
\series bold
type
\series default
:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_define_calendar(type, timestep, start_date, time_origin,
\begin_inset Newline newline
\end_inset

                                day_length, month_lengths, year_length,
\begin_inset Newline newline
\end_inset

                                leap_year_month, leap_year_drift,
\begin_inset Newline newline
\end_inset

                                leap_year_drift_offset)
\end_layout

\begin_layout Standard
or later using the following subroutine:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_set_start_date(start_date)
\end_layout

\begin_layout Subsection*
time_origin: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
date
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
TYPE(xios_date) :: time_origin
\end_layout

\begin_layout Standard
Define the time origin of the time axis.
 It will appear as metadata attached to the time axis in the output file.
 This attribute is optional, the default value is 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout

\series bold
0000-01-01 00:00:00
\end_layout

\end_inset

.
 The 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
type
\end_layout

\end_inset

 attribute must always be set at the same time or before this attribute
 is defined.
\begin_inset Newline newline
\end_inset


\begin_inset Newline newline
\end_inset

A partial date is allowed in the configuration file as long as the omitted
 parts are at the end, in which case they are initialized as in the default
 value.
 Optionally an offset can be added to the date using the notation "
\emph on
+ duration
\emph default
".
 
\begin_inset Newline newline
\end_inset


\begin_inset Newline newline
\end_inset

When using the Fortran interface, this attribute can be defined at the same
 time as the calendar 
\series bold
type
\series default
:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_define_calendar(type, timestep, start_date, time_origin,
\begin_inset Newline newline
\end_inset

                                day_length, month_lengths, year_length,
\begin_inset Newline newline
\end_inset

                                leap_year_month, leap_year_drift,
\begin_inset Newline newline
\end_inset

                                leap_year_drift_offset)
\end_layout

\begin_layout Standard
or later using the following subroutine:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_set_time_origin(time_origin)
\end_layout

\begin_layout Subsection*
timestep: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
duration
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran: 
\end_layout

\begin_layout LyX-Code
TYPE(xios_duration) :: timestep
\end_layout

\begin_layout Standard
Define the time step of the simulation for the current context.
 This attribute is mandatory.
\begin_inset Newline newline
\end_inset


\begin_inset Newline newline
\end_inset

When using the Fortran interface, this attribute can be defined at the same
 time as the calendar 
\series bold
type
\series default
:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_define_calendar(type, timestep, start_date, time_origin,
\begin_inset Newline newline
\end_inset

                                day_length, month_lengths, year_length,
\begin_inset Newline newline
\end_inset

                                leap_year_month, leap_year_drift,
\begin_inset Newline newline
\end_inset

                                leap_year_drift_offset)
\end_layout

\begin_layout Standard
or using the following subroutine:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_set_timestep(timestep)
\end_layout

\begin_layout Subsection*
day_length: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
integer
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran: 
\end_layout

\begin_layout LyX-Code
INTEGER :: day_length
\end_layout

\begin_layout Standard
Define the duration of a day, in seconds, when using a custom calendar.
 This attribute is mandatory if the calendar 
\series bold
type
\series default
 is set to "
\emph on
user_defined
\emph default
", otherwise it must not be defined.
\begin_inset Newline newline
\end_inset


\begin_inset Newline newline
\end_inset

When using the Fortran interface, this attribute must be defined at the
 same time as the calendar 
\series bold
type
\series default
:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_define_calendar(type, timestep, start_date, time_origin,
\begin_inset Newline newline
\end_inset

                                day_length, month_lengths, year_length,
\begin_inset Newline newline
\end_inset

                                leap_year_month, leap_year_drift,
\begin_inset Newline newline
\end_inset

                                leap_year_drift_offset)
\end_layout

\begin_layout Subsection*
month_lengths: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
1D-array of integer
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran: 
\end_layout

\begin_layout LyX-Code
INTEGER :: month_lengths(:)
\end_layout

\begin_layout Standard
Define the duration of each month, in days, when using a custom calendar.
 The number of elements in the array defines the number of months in a year
 and the sum of all elements is the total number of days in a year.
 This attribute is mandatory if the calendar 
\series bold
type
\series default
 is set to 
\series bold
\emph on
user_defined
\series default
\emph default
 and the 
\series bold
year_length
\series default
 attribute is not used, otherwise it must not be defined.
\begin_inset Newline newline
\end_inset


\begin_inset Newline newline
\end_inset

When using the Fortran interface, this attribute must be defined at the
 same time as the calendar 
\series bold
type
\series default
:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_define_calendar(type, timestep, start_date, time_origin,
\begin_inset Newline newline
\end_inset

                                day_length, month_lengths, year_length,
\begin_inset Newline newline
\end_inset

                                leap_year_month, leap_year_drift,
\begin_inset Newline newline
\end_inset

                                leap_year_drift_offset)
\end_layout

\begin_layout Subsection*
year_length: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
integer
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran: 
\end_layout

\begin_layout LyX-Code
INTEGER :: year_length
\end_layout

\begin_layout Standard
Define the duration of a year, in seconds, when using a custom calendar.
 This attribute is mandatory if the calendar 
\series bold
type
\series default
 is set to 
\series bold
\emph on
user_defined
\series default
\emph default
 and the 
\series bold
month_lengths
\series default
 attribute is not used, otherwise it must not be defined.
\begin_inset Newline newline
\end_inset


\begin_inset Newline newline
\end_inset

Note that the date format is modified when using this attribute: the month
 must be always be omitted and the day must also be omitted if 
\begin_inset Formula $year\_length\leq day\_length$
\end_inset

.
\begin_inset Newline newline
\end_inset


\begin_inset Newline newline
\end_inset

When using the Fortran interface, this attribute must be defined at the
 same time as the calendar 
\series bold
type
\series default
:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_define_calendar(type, timestep, start_date, time_origin,
\begin_inset Newline newline
\end_inset

                                day_length, month_lengths, year_length,
\begin_inset Newline newline
\end_inset

                                leap_year_month, leap_year_drift,
\begin_inset Newline newline
\end_inset

                                leap_year_drift_offset)
\end_layout

\begin_layout Subsection*
leap_year_month: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
integer
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran: 
\end_layout

\begin_layout LyX-Code
INTEGER :: leap_year_month
\end_layout

\begin_layout Standard
Define the month to which the extra day will be added in case of leap year,
 when using a custom calendar.
 This attribute is optional if the calendar 
\series bold
type
\series default
 is set to 
\series bold
\emph on
user_defined
\series default
\emph default
 and the 
\series bold
month_lengths
\series default
 attribute is used, otherwise it must not be defined.
 The default behaviour is not to have any leap year.
 If defined, this attribute must comply with the following constraint: 
\begin_inset Formula $1\leq leap\_year\_month\leq size(month\_lengths)$
\end_inset

 and the 
\series bold
leap_year_drift
\series default
 attribute must also be defined.
\begin_inset Newline newline
\end_inset


\begin_inset Newline newline
\end_inset

When using the Fortran interface, this attribute must be defined at the
 same time as the calendar 
\series bold
type
\series default
:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_define_calendar(type, timestep, start_date, time_origin,
\begin_inset Newline newline
\end_inset

                                day_length, month_lengths, year_length,
\begin_inset Newline newline
\end_inset

                                leap_year_month, leap_year_drift,
\begin_inset Newline newline
\end_inset

                                leap_year_drift_offset)
\end_layout

\begin_layout Subsection*
leap_year_drift: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
double
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran: 
\end_layout

\begin_layout LyX-Code
DOUBLE PRECISION :: leap_year_drift
\end_layout

\begin_layout Standard
Define the yearly drift, expressed as a fraction of a day, between the calendar
 year and the astronomical year, when using a custom calendar.
 This attribute is optional if the calendar 
\series bold
type
\series default
 is set to 
\series bold
\emph on
user_defined
\series default
\emph default
 and the 
\series bold
month_lengths
\series default
 attribute is used, otherwise it must not be defined.
 The default behaviour is not to have any leap year, i.e.
 the default value is 
\begin_inset Formula $\mathbf{0}$
\end_inset

.
 If defined, this attribute must comply with the following constraint: 
\begin_inset Formula $0\leq leap\_year\_drift<1$
\end_inset

 and the 
\series bold
leap_year_month
\series default
 attribute must also be defined.
\begin_inset Newline newline
\end_inset


\begin_inset Newline newline
\end_inset

When using the Fortran interface, this attribute must be defined at the
 same time as the calendar 
\series bold
type
\series default
:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_define_calendar(type, timestep, start_date, time_origin,
\begin_inset Newline newline
\end_inset

                                day_length, month_lengths, year_length,
\begin_inset Newline newline
\end_inset

                                leap_year_month, leap_year_drift,
\begin_inset Newline newline
\end_inset

                                leap_year_drift_offset)
\end_layout

\begin_layout Subsection*
leap_year_drift_offset: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
double
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran: 
\end_layout

\begin_layout LyX-Code
DOUBLE PRECISION :: leap_year_drift_offset
\end_layout

\begin_layout Standard
Define the initial drift between the calendar year and the astronomical
 year, expressed as a fraction of a day, at the beginning of the time origin's
 year, when using a custom calendar.
 This attribute is optional if the 
\series bold
leap_year_month
\series default
 and 
\series bold
leap_year_drift
\series default
 attributes are used, otherwise it must not be defined.
 The default value is 
\begin_inset Formula $\mathbf{0}$
\end_inset

.
 If defined, this attribute must comply with the following constraint: 
\begin_inset Formula $0\leq leap\_year\_drift\_offset<1$
\end_inset

.
 If 
\begin_inset Formula $leap\_yeap\_drift\_offset+leap\_yeap\_drift$
\end_inset

 is greater or equal to 1, then the first year will be a leap year.
\begin_inset Newline newline
\end_inset


\begin_inset Newline newline
\end_inset

When using the Fortran interface, this attribute must be defined at the
 same time as the calendar 
\series bold
type
\series default
:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_define_calendar(type, timestep, start_date, time_origin,
\begin_inset Newline newline
\end_inset

                                day_length, month_lengths, year_length,
\begin_inset Newline newline
\end_inset

                                leap_year_month, leap_year_drift,
\begin_inset Newline newline
\end_inset

                                leap_year_drift_offset)
\end_layout

\begin_layout Section
Axis attribute reference
\end_layout

\begin_layout Subsection*
name: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
string
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran: 
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: name
\end_layout

\begin_layout Standard
Define the name of the vertical axis, as it will appear in a file.
 If not defined, a name is self generated from the id.
 If multiple vertical axis are defined in a same file, each name must be
 different.
 
\end_layout

\begin_layout Subsection*
standard_name: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
string
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran: 
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: standard_name
\end_layout

\begin_layout Standard
Define the standard name of the vertical axis, as it will appear in the
 metadata attached to the axis of the output file.
 
\end_layout

\begin_layout Subsection*
long_name: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
string
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran: 
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: long_name
\end_layout

\begin_layout Standard
Define the long name of the vertical axis, as it will appear in the metadata
 attached to the axis of the output file.
 
\end_layout

\begin_layout Subsection*
unit: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
string
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran: 
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: unit
\end_layout

\begin_layout Standard
Define the unit of the axis as it will appear in the metadata attached to
 the axis in the output file.
\end_layout

\begin_layout Subsection*
size: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
integer
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: size
\end_layout

\begin_layout Standard
Define the size of the axis.
 This attribute is mandatory.
\end_layout

\begin_layout Subsection*
zoom_begin: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
integer
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: zoom_begin
\end_layout

\begin_layout Standard
Define the the beginning of the zoom.
 This must be an index between 1 and 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
size
\end_layout

\end_inset

.
 If not specified the default value is 1.
 It must also be evaluated from 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
zoom_end
\end_layout

\end_inset

 and 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
zoom_size
\end_layout

\end_inset

 if these are specified.
\end_layout

\begin_layout Subsection*
zoom_end: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
integer
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: zoom_end
\end_layout

\begin_layout Standard
Define the the end of the zoom.
 This must be an index between 1 and 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
size
\end_layout

\end_inset

.
 If not specified the default value is 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
size
\end_layout

\end_inset

.
 It must also be evaluated from 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
zoom_begin
\end_layout

\end_inset

 and 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
zoom_size
\end_layout

\end_inset

 if these are specified.
\end_layout

\begin_layout Subsection*
zoom_size: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
integer
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: zoom_size
\end_layout

\begin_layout Standard
Define the the size of the zoom.
 This must be an integer between 1 and 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
size
\end_layout

\end_inset

.
 If not specified the default value is 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
size
\end_layout

\end_inset

.
 It must also be evaluated from 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
zoom_begin
\end_layout

\end_inset

 and 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
zoom_end
\end_layout

\end_inset

 if these are specified.
\end_layout

\begin_layout Subsection*
value: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
1D-array of double
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
DOUBLE PRECISION :: value(:)
\end_layout

\begin_layout Standard
Define the value of each level of a vertical axis.
 The size of the array must be equal to the 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
size
\end_layout

\end_inset

 attribute.
 If not defined the default values are filled with values from 1 to 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
size
\end_layout

\end_inset

.
\end_layout

\begin_layout Subsection*
bounds: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
2D-array of double
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
DOUBLE PRECISION :: value(:,:)
\end_layout

\begin_layout Standard
Define the boundaries of each level of a the vertical axis.
 The dimensions of the array must be 
\begin_inset Formula $2\times\textbf{size}$
\end_inset

.
\end_layout

\begin_layout Section
Domain attribute reference
\end_layout

\begin_layout Subsection*
name: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
string
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: name
\end_layout

\begin_layout Standard
Define the name of the horizontal domain.
 This attribute may be used in case of multiple domains defined in the same
 file.
 In this case, the 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
name
\end_layout

\end_inset

 attribute will be suffixed to the longitude and latitude dimensions and
 axis name.
 Otherwise, a suffix will be self-generated.
\end_layout

\begin_layout Subsection*
type: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
enumeration { regular, curvilinear, unstructured }
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: type
\end_layout

\begin_layout Standard
Define the type of the grid.
\end_layout

\begin_layout Subsection*
ni_glo: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
integer
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: ni_glo
\end_layout

\begin_layout Standard
Define the first dimension of the global domain.
 This attribute is mandatory.
\end_layout

\begin_layout Subsection*
nj_glo: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
integer
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: nj_glo
\end_layout

\begin_layout Standard
Define the second dimension of the global domain.
 This attribute is mandatory.
\end_layout

\begin_layout Subsection*
ni: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
integer
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: ni
\end_layout

\begin_layout Standard
Define the first dimension of the local domain.
 This attribute may be also computed from 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
ibegin
\end_layout

\end_inset

 and 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
iend
\end_layout

\end_inset

 attribute value, so this attribute is optional.
 But, if defined, a consistent value must be supplied.
\end_layout

\begin_layout Standard
\begin_inset Formula $ni=iend-ibegin+1$
\end_inset


\end_layout

\begin_layout Standard
\begin_inset Formula $1\leq ibegin\leq iend\leq ni\_glo$
\end_inset


\end_layout

\begin_layout Subsection*
ibegin: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
integer
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: ibegin
\end_layout

\begin_layout Standard
Define the begining index of the first dimension of the local domain.
 This attribute may be also computed from 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
ni
\end_layout

\end_inset

 and 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
iend
\end_layout

\end_inset

 attribute values, so this attribute is optional.
 But, if defined, a consistent value must be supplied.
\end_layout

\begin_layout Standard
\begin_inset Formula $ibegin=iend-ni+1$
\end_inset


\end_layout

\begin_layout Standard
\begin_inset Formula $1\leq ibegin\leq iend\leq ni\_glo$
\end_inset


\end_layout

\begin_layout Subsection*
iend: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
integer
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: iend
\end_layout

\begin_layout Standard
Define the end index of the first dimension of the local domain.
 This attribute may be also computed from 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
ni
\end_layout

\end_inset

 and 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
ibegin
\end_layout

\end_inset

 attribute values, so this attribute is optional.
 But, if defined, a consistent value must be supplied.
\end_layout

\begin_layout Standard
\begin_inset Formula $iend=ibegin+ni-1$
\end_inset


\end_layout

\begin_layout Standard
\begin_inset Formula $1\leq ibegin\leq iend\leq ni\_glo$
\end_inset


\end_layout

\begin_layout Subsection*
nj: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
integer
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: nj
\end_layout

\begin_layout Standard
Define the second dimension of the local domain.
 This attribute may be also computed from 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
jbegin
\end_layout

\end_inset

 and 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
jend
\end_layout

\end_inset

 attribute values, so this attribute is optional.
 But, if defined, a consistent value must be supplied.
\end_layout

\begin_layout Standard
\begin_inset Formula $nj=jend-jbegin+1$
\end_inset


\end_layout

\begin_layout Standard
\begin_inset Formula $1\leq jbegin\leq jend\leq nj\_glo$
\end_inset


\end_layout

\begin_layout Subsection*
jbegin: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
integer
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: jbegin
\end_layout

\begin_layout Standard
Define the beginning index of the second dimension of the local domain.
 This attribute may be also computed from 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
nj
\end_layout

\end_inset

 and 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
jend
\end_layout

\end_inset

 attribute values, so this attribute is optional.
 But, if defined, a consistent value must be supplied.
\end_layout

\begin_layout Standard
\begin_inset Formula $jbegin=jend-nj+1$
\end_inset


\end_layout

\begin_layout Standard
\begin_inset Formula $1\leq jbegin\leq jend\leq nj\_glo$
\end_inset


\end_layout

\begin_layout Subsection*
jend: 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout
integer
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: jend
\end_layout

\begin_layout Standard
Define the ending index of the second dimension of the local domain.
 This attribute may be also computed from 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
nj
\end_layout

\end_inset

 and 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
jbegin
\end_layout

\end_inset

 attribute values, so this attribute is optional.
 But, if defined, a consistent value must be supplied.
\end_layout

\begin_layout Standard
\begin_inset Formula $jend=jbegin+nj-1$
\end_inset


\end_layout

\begin_layout Standard
\begin_inset Formula $1\leq jbegin\leq jend\leq nj\_glo$
\end_inset


\end_layout

\begin_layout Subsection*
zoom_ni: 
\emph on
integer
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: zoom_ni
\end_layout

\begin_layout Standard
Define the size of the zoom on the first dimension on the global domain.
 This attribute is optional.
 The default value is 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
ni
\end_layout

\end_inset

.
\end_layout

\begin_layout Standard
\begin_inset Formula $1\leq zoom\_ni\leq ni$
\end_inset


\end_layout

\begin_layout Subsection*
zoom_ibegin: 
\emph on
integer
\end_layout

\begin_layout Standard
Fortran
\end_layout

\begin_layout LyX-Code
INTEGER :: zoom_ibegin
\end_layout

\begin_layout Standard
Define the beginning index on the first dimension of the zoom for the global
 domain.
 This attribute is optional.
 The default value is
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
1
\end_layout

\end_inset

.
\end_layout

\begin_layout Subsection*
zoom_nj: 
\emph on
integer
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: zoom_nj
\end_layout

\begin_layout Standard
Define the size of the zoom on the second dimension for the global domain.
 This attribute is optional.
 The default value is
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
nj
\end_layout

\end_inset

.
\end_layout

\begin_layout Standard
\begin_inset Formula $1\leq zoom\_ni\leq ni$
\end_inset


\end_layout

\begin_layout Subsection*
zoom_jbegin: 
\emph on
integer
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: zoom_jbegin
\end_layout

\begin_layout Standard
Define the beginning index on the second dimension of the zoom for the global
 domain.
 This attribute is optional.
 The default value is 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
1
\end_layout

\end_inset

.
\end_layout

\begin_layout Subsection*
mask: 
\emph on
2D-array of bool
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
LOGICAL :: mask(:,:)
\end_layout

\begin_layout Standard
Define the mask of the local domain.
 The masked value will be replaced by the value of the field attribute 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
default_value
\end_layout

\end_inset

 in the output file.
\end_layout

\begin_layout Subsection*
lonvalue: 
\emph on
1D-array of double
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
DOUBLE PRECISION :: lonvalue(:)
\end_layout

\begin_layout Standard
Define the value of the longitude on the local domain.
 For a cartesian grid, the size of the array will be 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
ni
\end_layout

\end_inset

.
 For a curvilinear grid, the size of the array will be 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
ni
\begin_inset Formula $\times$
\end_inset

nj
\end_layout

\end_inset

.
 This attribute is mandatory.
\end_layout

\begin_layout Subsection*
latvalue: 
\emph on
1D-array of double
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
DOUBLE PRECISION :: latvalue(:)
\end_layout

\begin_layout Standard
Define the value of the latitude on the local domain.
 For a cartesian grid, the size of the array will be nj.
 For a curvilinear grid, the size of the array will be 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
ni
\begin_inset Formula $\times$
\end_inset

nj
\end_layout

\end_inset

.
 This attribute is mandatory.
\end_layout

\begin_layout Subsection*
nvertex: 
\emph on
integer
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: nvertex
\end_layout

\begin_layout Standard
Define the the maximum number of vertices for a cell.
 This is useful to specify the boundaries of cells for an unstructured mesh.
 This attribute is optional.
\end_layout

\begin_layout Subsection*
bounds_lon: 
\emph on
1D-array of double
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
DOUBLE PRECISION :: bounds_lon(:)
\end_layout

\begin_layout Standard
Longitude value of the vertex of the cells.
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
nvertex
\end_layout

\end_inset

 attribute must also be defined.
 This attribute is optional.
\end_layout

\begin_layout Subsection*
bounds_lat: 
\emph on
1D-array of double
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
DOUBLE PRECISION :: bounds_lat(:)
\end_layout

\begin_layout Standard
Latitude value of the vertex of the cells.
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
nvertex
\end_layout

\end_inset

 attribute must also be defined.
 This attribute is optional.
\end_layout

\begin_layout Subsection*
area: 
\emph on
2D-array of double
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
DOUBLE PRECISION :: area(:,:)
\end_layout

\begin_layout Standard
Area of the cells.
 The size of the array must be 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
ni
\begin_inset Formula $\times$
\end_inset

nj
\end_layout

\end_inset

.
 This attribute is optional.
\end_layout

\begin_layout Subsection*
data_dim: 
\emph on
integer
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: datadim
\end_layout

\begin_layout Standard
Define how a field is stored on memory for the client code.
 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
datadim
\end_layout

\end_inset

 value can be 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
1
\end_layout

\end_inset

 or 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
2
\end_layout

\end_inset

.
 A value of 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
1
\end_layout

\end_inset

 indicates that the horizontal layer of the field is stored on a 1D array
 as a vector of points.
 A value of 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
2
\end_layout

\end_inset

 indicates that the horizontal layer is stored in a 2D array.
 This attribute is mandatory.
\end_layout

\begin_layout Subsection*
data_ibegin:
\emph on
 integer
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: data_ibegin
\end_layout

\begin_layout Standard
Define the beginning index of the field data for the first dimension.
 This attribute is an offset regarding the local domain, so the value can
 be negative.
 A negative value indicates that only some valid part of the data will extracted
, for example in the case of a ghost cell.
 A positive value indicates that the local domain is greater than the data
 stored in memory.
 A 0-value means that the local domain matches the data in memory.
 This attribute is optional and the default value is 0.
 Otherwise 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
data_ibegin
\end_layout

\end_inset

 and 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
data_ni
\end_layout

\end_inset

 must be defined together.
\end_layout

\begin_layout Subsection*
data_ni: 
\emph on
integer
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: data_ni
\end_layout

\begin_layout Standard
Define the size of the field data for the first dimension.
 This attribute is optional and the default value is 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
ni
\end_layout

\end_inset

.
 Otherwise 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
data_ibegin
\end_layout

\end_inset

 and 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
data_ni
\end_layout

\end_inset

 must be defined together.
\end_layout

\begin_layout Subsection*
data_jbegin: 
\emph on
integer
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: data_jbegin
\end_layout

\begin_layout Standard
Define the beginning index of the field data for the second dimension.
 This attribute is take account only if
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
 data_dim=2
\end_layout

\end_inset

.
 This attribute is an offset regarding the local domain, so the value can
 be negative.
 A negative value indicate that only some valid part of the data will extracted,
 for example in case of ghost cell.
 A positive value indicate that the local domain is greater than the data
 stored in memory.
 A 0-value means that the local domain match the data in memory.
 This attribute is optional and the default value is 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
0
\end_layout

\end_inset

.
 Otherwise 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
data_jbegin
\end_layout

\end_inset

 and 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
data_nj
\end_layout

\end_inset

 must be defined together.
\end_layout

\begin_layout Subsection*
data_nj: 
\emph on
integer
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: data_nj
\end_layout

\begin_layout Standard
Define the size of the field data for the first dimension.
 This attribute is take account only if 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
data_dim=2
\end_layout

\end_inset

.
 This attribute is optional and the default value is 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
nj
\end_layout

\end_inset

.
 Otherwise 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
data_jbegin
\end_layout

\end_inset

 and 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
data_nj
\end_layout

\end_inset

 must be defined together.
\end_layout

\begin_layout Subsection*
data_n_index: 
\emph on
integer
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: data_nindex
\end_layout

\begin_layout Standard
In case of a compressed horizontal domain, this attribute define the number
 of points stored in memory on the local domain.
\end_layout

\begin_layout Subsection*
data_i_index: 
\emph on
1D-array of integer
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: data_i_index(:)
\end_layout

\begin_layout Standard
In case of a compressed horizontal domain, define the indexation the indexation
 of the data for the first dimension.
 The size of the array must be 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
data_nindex
\end_layout

\end_inset

.
 This attribute is optional.
\end_layout

\begin_layout Subsection*
data_j_index: 
\emph on
1D-array of integer
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: data_j_index(:)
\end_layout

\begin_layout Standard
In case of a compressed horizontal domain, define the indexation the indexation
 of the data for the second dimension.
 This is meaningful only if 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
data_dim=2
\end_layout

\end_inset

.
 The size of the array must be 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
data_nindex
\end_layout

\end_inset

.
 This attribute is optional.
\end_layout

\begin_layout Section
Grid attribute reference
\end_layout

\begin_layout Subsection*
name: string
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: name
\end_layout

\begin_layout Standard
Define the name of the grid.
 This attribute is actually not used internally.
 Optional attribute.
\end_layout

\begin_layout Subsection*
domain_ref: string
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: domain_ref
\end_layout

\begin_layout Standard
Define the horizontal domain reference of the grid.
 This attribute is mandatory.
\end_layout

\begin_layout Subsection*
axis_ref: string
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: axis_ref
\end_layout

\begin_layout Standard
Define the axis reference of the grid.
 This attribute is optional, if not defined, the grid will be considered
 as a 2-Dimensionnal grid without vertical layer.
\end_layout

\begin_layout Subsection*
mask: 
\emph on
3D-array of bool
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
LOGICAL :: mask(:,:,:)
\end_layout

\begin_layout Standard
Define the mask of the local grid.
 Masked value will be replaced by the value of the field attribute 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
default_value
\end_layout

\end_inset

 in the output file.
\end_layout

\begin_layout Section
Field attribute reference
\end_layout

\begin_layout Subsection*
name: 
\emph on
string
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: name
\end_layout

\begin_layout Standard
Define the 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
name
\end_layout

\end_inset

 of the field as it will appear in an output file.
 This attribute is optional.
 If not present, the identifier 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
id
\end_layout

\end_inset

 will be substituted.
\end_layout

\begin_layout Subsection*
standard_name: 
\emph on
string
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: standard_name
\end_layout

\begin_layout Standard
Define the 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
standard_name
\end_layout

\end_inset

 attribute as it will appear in the metadata of an output file.
 This attribute is optional.
\end_layout

\begin_layout Subsection*
long_name: 
\emph on
string
\end_layout

\begin_layout Standard
Fortran: 
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: long_name
\end_layout

\begin_layout Standard
Define the 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
long_name
\end_layout

\end_inset

 attribute as it will appear in the metadata of an output file.
 This attribute is optional.
\end_layout

\begin_layout Subsection*
unit: 
\emph on
string
\end_layout

\begin_layout Standard
Fortran: 
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: unit
\end_layout

\begin_layout Standard
Define the 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
unit
\end_layout

\end_inset

 of the field.
 This attribute is optional.
\end_layout

\begin_layout Subsection*
operation: enumeration
\emph on
 { once, instant, average, maximum, minimum, accumulate }
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: operation
\end_layout

\begin_layout Standard
Define the temporal operation applied on the field.
 This attribute is optional, by default no operation is applied.
\end_layout

\begin_layout Subsection*
freq_op: 
\emph on
duration
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
TYPE(xios_duration) :: freq_op
\end_layout

\begin_layout Standard
Define the frequency of the sampling for the temporal operation, so a field
 value will be used for temporal averaging every 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
freq_op
\end_layout

\end_inset

 time step.
 It is very useful for sub-processes called at different frequency in a
 model.
 This attribute is optional, the default value is 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
1ts
\end_layout

\end_inset

(1 time step).
\end_layout

\begin_layout Subsection*
freq_offset: 
\emph on
duration
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
TYPE(xios_duration) :: freq_offset
\end_layout

\begin_layout Standard
Define the offset when 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
freq_op
\end_layout

\end_inset

 is defined.
 This attribute is optional, the default value is 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
0ts
\end_layout

\end_inset

(0 time step).
\end_layout

\begin_layout Standard
\begin_inset Formula $0\leq freq\_offset<freq\_op$
\end_inset


\end_layout

\begin_layout Subsection*
level: 
\emph on
integer
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: level
\end_layout

\begin_layout Standard
Define the level of output of the field.
 A field will be output only if the file attribute
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
 output_level 
\begin_inset Formula $\geq$
\end_inset

level
\end_layout

\end_inset

.
 This attribute is optional, the default value is 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
0
\end_layout

\end_inset

.
\end_layout

\begin_layout Subsection*
prec: 
\emph on
integer
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: prec
\end_layout

\begin_layout Standard
Define the precision in byte of a field in an output file.
 Available value are: 2 (integer), 4 (float single precision) and 8 (float
 double precision).
\end_layout

\begin_layout Subsection*
enabled: 
\emph on
bool
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
LOGICAL :: enabled
\end_layout

\begin_layout Standard
Define if a field must be output or not.
 This attribute is optional, the default value is 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
true
\end_layout

\end_inset

.
\end_layout

\begin_layout Subsection*
read_access: 
\emph on
bool
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
LOGICAL :: read_access
\end_layout

\begin_layout Standard
Define whether a field can be read from the model or not.
 This attribute is optional, the default value is 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
false
\end_layout

\end_inset

.
 Note that for fields belonging to a file in 
\series bold
\emph on
read
\series default
\emph default
 
\series bold
mode
\series default
, this attribute is always 
\series bold
true
\series default
.
\end_layout

\begin_layout Subsection*
field_ref: 
\emph on
string
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: field_ref
\end_layout

\begin_layout Standard
Define a field reference.
 All attributes are inherited from the referenced field after the classical
 inheritance mechanism.
 The value assigned to the referenced field is transmitted to to current
 field to perform temporal operation.
 This attribute is optional.
\end_layout

\begin_layout Subsection*
grid_ref: 
\emph on
string
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: grid_ref
\end_layout

\begin_layout Standard
Define on which grid the current field is defined.
 This attribute is optional, if missing, domain_ref and axis_ref must be
 defining.
\end_layout

\begin_layout Subsection*
domain_ref: 
\emph on
string
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: domain_ref
\end_layout

\begin_layout Standard
Define on which horizontal domain the current field is defined.
 This attribute is optional, but if this attribute is defined, 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
grid_ref
\end_layout

\end_inset

 must not be.
\end_layout

\begin_layout Subsection*
axis_ref: 
\emph on
string
\end_layout

\begin_layout Standard
Fortran: 
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: axis_ref
\end_layout

\begin_layout Standard
Define on which vertical axis the current field is defined.
 This attribute is optional, but if this attribute is defined, 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
domain_ref
\end_layout

\end_inset

 must be too and 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
grid_ref
\end_layout

\end_inset

 must not.
\end_layout

\begin_layout Subsection*
default_value: 
\emph on
double
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
DOUBLE PRECISION :: default_value
\end_layout

\begin_layout Standard
Define the value which should be used in place of the missing data of a
 field.
 This attribute is optional.
 If no value was defined, the missing data will be replaced by uninitialized
 values which can lead to undefined behaviors.
\end_layout

\begin_layout Subsection*
valid_min: 
\emph on
double
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
DOUBLE PRECISION :: valid_min
\end_layout

\begin_layout Standard
All field values below 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
valid_min
\end_layout

\end_inset

 attribute value are set to missing value.
\end_layout

\begin_layout Subsection*
valid_min: 
\emph on
double
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
DOUBLE PRECISION :: valid_min
\end_layout

\begin_layout Standard
All field values above 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
valid_max
\end_layout

\end_inset

 attribute value are set to missing value.
\end_layout

\begin_layout Subsection*
detect_missing_value: 
\emph on
bool
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
LOGICAL: detect_missing_value
\end_layout

\begin_layout Standard
When XIOS detect a default value in a field, it does not include the value
 in the statistic of the operation, like averaging, minimum, maximum...
\end_layout

\begin_layout Subsection*
add_offset: 
\emph on
double
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
DOUBLE PRECISION: add_offset
\end_layout

\begin_layout Standard
Set the 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
add_offset
\end_layout

\end_inset

 metadata CF attribute in the output file.
 In output, the 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
add_offset
\end_layout

\end_inset

 value is subtracted to the field values.
\end_layout

\begin_layout Subsection*
scale_factor: 
\emph on
double
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
DOUBLE PRECISION: scale_factor
\end_layout

\begin_layout Standard
Set the 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
scale_factor
\end_layout

\end_inset

 metadata CF attribute in the output file.
 In output, the field values are divided by the 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
scale_factor
\end_layout

\end_inset

 value.
\end_layout

\begin_layout Subsection*
compression_level: 
\emph on
integer
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: compression_level
\end_layout

\begin_layout Standard
Define whether the field should be compressed using NetCDF-4 built-in compressio
n.
 The compression level must range from 0 to 9.
 An higher compression level means a better compression at the cost of using
 more processing power.
 This attribute is optional, the default value is inherited from the file
 attribute 
\series bold
compression_level
\series default
.
\end_layout

\begin_layout Subsection*
indexed_output: 
\emph on
bool
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
LOGICAL :: indexed_output
\end_layout

\begin_layout Standard
Define whether the field data must be outputted as an indexed grid instead
 of a full grid whenever possible.
 This attribute is optional, the default value is 
\series bold
\emph on
false
\series default
\emph default
.
\end_layout

\begin_layout Subsection*
ts_enabled: 
\emph on
bool
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
LOGICAL :: ts_enabled
\end_layout

\begin_layout Standard
Define whether the field can be outputted as a timeserie if requested.
 This attribute is optional, the default value is 
\series bold
\emph on
false
\series default
\emph default
.
\end_layout

\begin_layout Subsection*
ts_split_freq: 
\emph on
duration
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
TYPE(xios_duration) :: ts_split_freq
\end_layout

\begin_layout Standard
Define the splitting frequency that should be used for the timeserie if
 it has been requested.
 This attribute is optional, by default this value is inherited from the
 file 
\series bold
split_freq
\series default
.
\end_layout

\begin_layout Section
Variable attribute reference
\end_layout

\begin_layout Subsection*
name: 
\emph on
string
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: name
\end_layout

\begin_layout Standard
Define the 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
name
\end_layout

\end_inset

 of the variable as it will appear in an output file.
 This attribute is optional.
 If not present, the 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
id
\end_layout

\end_inset

 will be used instead.
\end_layout

\begin_layout Subsection*
type: enumeration { bool, int, int32, int16, int64, float, double, string
 }
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: type
\end_layout

\begin_layout Standard
Define the 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
type
\end_layout

\end_inset

 of the variable.
 Note that the 
\series bold
\emph on
int
\series default
\emph default
 type is a synonym for 
\series bold
\emph on
int32
\series default
\emph default
.
 This attribute is mandatory.
\end_layout

\begin_layout Section
File attribute reference
\end_layout

\begin_layout Subsection*
name: 
\emph on
string
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: name
\end_layout

\begin_layout Standard
Define the name of the file.
 This attribute is mandatory.
\end_layout

\begin_layout Subsection*
name_suffix: 
\emph on
string
\end_layout

\begin_layout Standard
Fortran: 
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: name_suffix
\end_layout

\begin_layout Standard
Define a suffix to add to the name of the file.
 This attribute is optional.
\end_layout

\begin_layout Subsection*
min_digits: 
\emph on
integer
\end_layout

\begin_layout Standard
Fortran: 
\end_layout

\begin_layout LyX-Code
INTEGER :: min_digits
\end_layout

\begin_layout Standard
For multiple_file, define the minimum digits composing the suffix defining
 the rank of the server, which will be happened to the name of the file.
 This attribute is optional and the default value is 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
0
\end_layout

\end_inset

.
\end_layout

\begin_layout Subsection*
output_freq: 
\emph on
duration
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
TYPE(xios_duration) :: output_freq
\end_layout

\begin_layout Standard
Define the output frequency for the current file.
 This attribute is mandatory.
\end_layout

\begin_layout Subsection*
output_level: 
\emph on
integer
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: output_level
\end_layout

\begin_layout Standard
Define an output level for the field defining inside the current file.
 Field is output only if the field attribute 
\begin_inset Formula $level\leq output\_level$
\end_inset

.
\end_layout

\begin_layout Subsection*
sync_freq: 
\emph on
duration
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
TYPE(xios_duration) :: sync_freq
\end_layout

\begin_layout Standard
Define the frequency for flushing the current file onto disk.
 It may result bad performance but data are wrote even if the file will
 not be closed.
 This attribute is optional.
\end_layout

\begin_layout Subsection*
split_freq: 
\emph on
duration
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
TYPE(xios_duration) :: split_freq
\end_layout

\begin_layout Standard
Define the time frequency for splitting the current file.
 In that case, the start and end dates are added to the file 
\series bold
name
\series default
 (see 
\begin_inset Flex Emph
status collapsed

\begin_layout Plain Layout

\series bold
\emph on
split_freq_format
\end_layout

\end_inset

 attribute).
 This attribute is optional, by default no splitting is done.
\end_layout

\begin_layout Subsection*
split_freq_format: 
\emph on
string
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: split_freq_format
\end_layout

\begin_layout Standard
Define the format of the split date suffixed to the file.
 Can contain any character, 
\emph on

\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
%y
\end_layout

\end_inset


\emph default
 will be replaced by the year (4 characters), 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
%mo
\end_layout

\end_inset

 by the month (2 char), 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
%d
\end_layout

\end_inset

 by the day (2 char), 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
%h
\end_layout

\end_inset

 by the hour (2 char), 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
%mi
\end_layout

\end_inset

 by the minute (2 char), 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
%s
\end_layout

\end_inset

 by the second (2 char), 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
%S
\end_layout

\end_inset

 by the number of seconds since the time origin and 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
%D
\end_layout

\end_inset

 by the number of full days since the time origin.
 This attribute is optional and the default behavior is to create a suffix
 with the date until the smaller non zero unit.
 For example, in one day split frequency, the hour, minute and second will
 not appear in the suffix, only year, month and day.
\end_layout

\begin_layout Subsection*
enabled: 
\emph on
bool
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
LOGICAL :: enabled
\end_layout

\begin_layout Standard
Define if a file must be written/read or not.
 This attribute is optional, the default value is 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
true
\end_layout

\end_inset

.
\end_layout

\begin_layout Subsection*
type: 
\emph on
mode { read, write }
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: mode
\end_layout

\begin_layout Standard
Define whether the file will be read or written.
 This attribute is optional, the default value is 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout
write
\end_layout

\end_inset

.
\end_layout

\begin_layout Subsection*
type: 
\emph on
enumeration { one_file, multiple_file }
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: type
\end_layout

\begin_layout Standard
Define the type of the file: 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout

\emph on
multiple_file
\end_layout

\end_inset

: one file by server using sequential netcdf writing, 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout

\emph on
one_file
\end_layout

\end_inset

: one single global file is wrote using netcdf4 parallel access.
 This attribute is mandatory.
\end_layout

\begin_layout Subsection*
format: 
\emph on
enumeration { netcdf4, netcdf4_classic }
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: type
\end_layout

\begin_layout Standard
Define the format of the file: 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout

\emph on
netcdf4
\end_layout

\end_inset

: the HDF5 format will be used, 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout

\emph on
netcdf4
\emph default
_
\emph on
classic
\end_layout

\end_inset

: the classic NetCDF format will be used.
 The attribute is optional, the default value is 
\series bold
\emph on
netcdf4
\series default
\emph default
.
\begin_inset Newline newline
\end_inset


\begin_inset Newline newline
\end_inset

Note that the 
\series bold
\emph on
netcdf4
\emph default
_
\emph on
classic
\series default
\emph default
 format can be used with the attribute 
\series bold
type
\series default
 set to 
\series bold
\emph on
one_file
\series default
\emph default
 only if the NetCDF4 library was compiled with Parallel NetCDF support (--enable
-pnetcdf).
\end_layout

\begin_layout Subsection*
par_access: 
\emph on
enumeration { collective, independent }
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: par_access
\end_layout

\begin_layout Standard
For parallel writing, define which type of MPI calls will be used.
 This attribute is optional, the default value is 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout

\emph on
collective
\end_layout

\end_inset

.
\end_layout

\begin_layout Subsection*
append: 
\emph on
bool
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
LOGICAL :: append
\end_layout

\begin_layout Standard
Define whether the output data is to be appended at the end of the file
 if it already exists or if the existing file is to be overwritten.
 This attribute is optional, the default value is 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout

\emph on
false
\end_layout

\end_inset

.
\end_layout

\begin_layout Subsection*
compression_level: 
\emph on
integer
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
INTEGER :: compression_level
\end_layout

\begin_layout Standard
Define whether the fields should be compressed using NetCDF-4 built-in compressi
on by default.
 The compression level must range from 0 to 9.
 An higher compression level means a better compression at the cost of using
 more processing power.
 This attribute is optional, the default value is 
\begin_inset Flex Strong
status collapsed

\begin_layout Plain Layout

\emph on
0
\end_layout

\end_inset

 (no compression).
\end_layout

\begin_layout Subsection*
time_counter: 
\emph on
enumeration { centered, instant, record, none }
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: time_counter
\end_layout

\begin_layout Standard
Define how the 
\begin_inset Quotes eld
\end_inset

time_counter
\begin_inset Quotes erd
\end_inset

 variable will be outputted:
\end_layout

\begin_layout Itemize

\series bold
\emph on
centered
\series default
\emph default
: use centered times
\end_layout

\begin_layout Itemize

\series bold
\emph on
instant
\series default
\emph default
: use instant times
\end_layout

\begin_layout Itemize

\series bold
\emph on
record
\series default
\emph default
: use record indexes
\end_layout

\begin_layout Itemize

\series bold
\emph on
none
\series default
\emph default
: do not output the variable.
\end_layout

\begin_layout Standard
This attribute is optional, the default value is 
\series bold
\emph on
centered
\series default
\emph default
.
\end_layout

\begin_layout Subsection*
timeseries: 
\emph on
enumeration { none, only, both, exclusive }
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: time_counter
\end_layout

\begin_layout Standard
Define whether the timeseries must be outputted:
\end_layout

\begin_layout Itemize

\series bold
\emph on
none
\series default
\emph default
: no timeseries are outputted, only the regular file
\end_layout

\begin_layout Itemize

\series bold
\emph on
only
\series default
\emph default
: only the timeseries are outputted, the regular file is not created
\end_layout

\begin_layout Itemize

\series bold
\emph on
both
\series default
\emph default
: both the timeseries and the regular file are outputted.
\end_layout

\begin_layout Itemize

\series bold
\emph on
exclusive
\series default
\emph default
: the timeseries are outputted and a regular file is created with only the
 fields which were not marked for output as a timeserie (if any).
\end_layout

\begin_layout Standard
This attribute is optional, the default value is 
\series bold
\emph on
none
\series default
\emph default
.
\end_layout

\begin_layout Subsection*
ts_prefix: 
\emph on
string
\end_layout

\begin_layout Standard
Fortran:
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*) :: ts_prefix
\end_layout

\begin_layout Standard
Define the prefix to use for the name of the timeseries files.
 This attribute is optional, by default the file 
\series bold
name
\series default
 will be used.
\end_layout

\begin_layout Chapter
Fortran interface reference
\end_layout

\begin_layout Section*
Initialization
\end_layout

\begin_layout Subsection*
XIOS initialization
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_initialize(client_id, local_comm, return_comm)
\end_layout

\begin_layout LyX-Code
  CHARACTER(LEN=*),INTENT(IN)         :: client_id
\end_layout

\begin_layout LyX-Code
  INTEGER,INTENT(IN),OPTIONAL         :: local_comm
\end_layout

\begin_layout LyX-Code
  INTEGER,INTENT(OUT),OPTIONAL        :: return_comm
\end_layout

\begin_layout Subsubsection*
Argument:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
client_id
\end_layout

\end_inset

: client identifier
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
local_comm
\end_layout

\end_inset

: MPI communicator of the client
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
return_comm
\end_layout

\end_inset

: split return MPI communicator
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This subroutine must be called before any other call of MPI client library.
 It may be able to initialize MPI library (calling 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
MPI_Init
\end_layout

\end_inset

) if not already initialized.
 Since XIOS is able to work in client/server mode (parameter 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
using_server=true
\end_layout

\end_inset

), the global communicator must be split and a local split communicator
 is returned to be used by the client model for it own purpose.
 If more than one model is present, XIOS could be interfaced with the OASIS
 coupler (compiled with 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
-using_oasis
\end_layout

\end_inset

 option and parameter 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
using_oasis=true
\end_layout

\end_inset

), so in this case, the splitting would be done globally by OASIS.
\end_layout

\begin_layout Itemize
If MPI is not initialized, XIOS would initialize it calling MPI_Init function.
 In this case, the MPI finalization would be done by XIOS in the 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_finalize
\end_layout

\end_inset

 subroutine, and must not be done by the model.
\end_layout

\begin_layout Itemize
If OASIS coupler is not used (using_oasis=false)
\end_layout

\begin_deeper
\begin_layout Itemize
If server mode is not activated (
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
using_server=false
\end_layout

\end_inset

): if local_comm MPI communicator is specified then it would be used for
 internal MPI communication otherwise 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
MPI_COMM_WORLD
\end_layout

\end_inset

 communicator would be used by default.
 A copy of the communicator (of 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
local_comm
\end_layout

\end_inset

 or 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
MPI_COMM_WORLD
\end_layout

\end_inset

) would be returned in return_comm argument.
 If 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
return_comm
\end_layout

\end_inset

 is not specified, then 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
local_comm
\end_layout

\end_inset

 or 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
MPI_COMM_WORLD
\end_layout

\end_inset

 can be used by the model for it own communication.
\end_layout

\begin_layout Itemize
If server mode is activated (
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
using_server=true
\end_layout

\end_inset

): 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
local_comm
\end_layout

\end_inset

 must not be specified since the global 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
MPI_COMM_WORLD
\end_layout

\end_inset

 communicator would be split by XIOS.
 The split communicator is returned in 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
return_comm
\end_layout

\end_inset

 argument.
\end_layout

\end_deeper
\begin_layout Itemize
If OASIS coupler is used (
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
using_oasis=true
\end_layout

\end_inset

)
\end_layout

\begin_deeper
\begin_layout Itemize
If server mode is not enabled (
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
using_server=false
\end_layout

\end_inset

) 
\end_layout

\begin_deeper
\begin_layout Itemize
If 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
local_comm
\end_layout

\end_inset

 is specified, it means that OASIS has been initialized by the model and
 global communicator has been already split previously by OASIS, and passed
 as 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
local_comm
\end_layout

\end_inset

 argument.
 The returned communicator would be a duplicate copy of 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
local_comm
\end_layout

\end_inset

.
\end_layout

\begin_layout Itemize
Otherwise: if MPI was not initialized, OASIS will be initialized calling
 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
prism_init_comp_proto
\end_layout

\end_inset

 subroutine.
 In this case, XIOS will call 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
prism_terminate_proto
\end_layout

\end_inset

 when 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_finalized
\end_layout

\end_inset

 is called.
 The split communicator is returned in 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
return_comm
\end_layout

\end_inset

 argument using 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
prism_get_localcomm_proto
\end_layout

\end_inset

 return argument.
\end_layout

\end_deeper
\begin_layout Itemize
If server mode is enabled (
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
using_server=true
\end_layout

\end_inset

)
\end_layout

\begin_deeper
\begin_layout Itemize
If 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
local_comm
\end_layout

\end_inset

 is specified, it means that OASIS has been initialized by the model and
 global communicator has been already split previously by OASIS, and passed
 as local_comm argument.
 The returned communicator return_comm would be a split communicator given
 by OASIS.
\end_layout

\begin_layout Itemize
Otherwise: if MPI was not initialized, OASIS will be initialized calling
 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
prism_init_comp_proto
\end_layout

\end_inset

 subroutine.
 In this case, XIOS will call 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
prism_terminate_proto
\end_layout

\end_inset

 when 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_finalized
\end_layout

\end_inset

 is called.
 The split communicator is returned in 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
return_comm
\end_layout

\end_inset

 argument using 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
prism_get_localcomm_proto
\end_layout

\end_inset

 return argument.
\end_layout

\end_deeper
\end_deeper
\begin_layout Section*
Finalization
\end_layout

\begin_layout Subsection*
XIOS finalization
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_finalize()
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Standard
None
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This call must be done at the end of the simulation for a successful execution.
 It gives the end signal to the xios server pools to finish it execution.
 If MPI has been initialize by XIOS the MPI_Finalize will be called.
 If OASIS coupler has been initialized by XIOS, then finalization will be
 done calling 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
prism_terminate_proto
\end_layout

\end_inset

 subroutine.
\end_layout

\begin_layout Section*
Tree elements management subroutines
\end_layout

\begin_layout Standard
This set of subroutines enable the models to interact, complete or query
 the XML tree data base.
 New elements or group of elements can be added as child in the tree, attributes
 of the elements can be set or query.
 The type of element actually available are: context, axis, domain, grid,
 field, variable and file.
 An element can be identified by a string or by an handle associated to
 the type of the element.
 Root element (ex: 
\begin_inset Quotes eld
\end_inset

axis_definition
\begin_inset Quotes erd
\end_inset

, 
\begin_inset Quotes eld
\end_inset

field_definition
\begin_inset Quotes erd
\end_inset

,....) are considered like a group of element and are identified by a specific
 string 
\begin_inset Quotes eld
\end_inset

element_definition
\begin_inset Quotes erd
\end_inset

 where element can be any one of the existing elements.
\end_layout

\begin_layout Subsection*
Fortran type of the handles element
\end_layout

\begin_layout Quotation
TYPE(xios_element)
\end_layout

\begin_layout Standard
where 
\begin_inset Quotes eld
\end_inset

element
\begin_inset Quotes erd
\end_inset

 can be any one among 
\begin_inset Quotes eld
\end_inset

context
\begin_inset Quotes erd
\end_inset

, 
\begin_inset Quotes eld
\end_inset

axis
\begin_inset Quotes erd
\end_inset

, 
\begin_inset Quotes eld
\end_inset

domain
\begin_inset Quotes erd
\end_inset

, 
\begin_inset Quotes eld
\end_inset

grid
\begin_inset Quotes erd
\end_inset

, 
\begin_inset Quotes eld
\end_inset

field
\begin_inset Quotes erd
\end_inset

, 
\begin_inset Quotes eld
\end_inset

variable
\begin_inset Quotes erd
\end_inset

 or 
\begin_inset Quotes eld
\end_inset

file
\begin_inset Quotes erd
\end_inset

, or the associated group (excepted for context): 
\begin_inset Quotes eld
\end_inset

axis_group
\begin_inset Quotes erd
\end_inset

, 
\begin_inset Quotes eld
\end_inset

domain_group
\begin_inset Quotes erd
\end_inset

, 
\begin_inset Quotes eld
\end_inset

grid_group
\begin_inset Quotes erd
\end_inset

, 
\begin_inset Quotes eld
\end_inset

field_group
\begin_inset Quotes erd
\end_inset

, 
\begin_inset Quotes eld
\end_inset

variable_group
\begin_inset Quotes erd
\end_inset

 or 
\begin_inset Quotes eld
\end_inset

file_group
\begin_inset Quotes erd
\end_inset

.
\end_layout

\begin_layout Subsection*
Getting handles
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_get_element_handle(id,handle)
\end_layout

\begin_layout LyX-Code
CHARACTER(len = *) , INTENT(IN) :: id
\end_layout

\begin_layout LyX-Code
TYPE(xios_element), INTENT(OUT):: handle
\end_layout

\begin_layout Standard
where element is one of the existing element or group of element.
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
id
\end_layout

\end_inset

: string identifier.
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
handle
\end_layout

\end_inset

: element handle
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This subroutine return the handle of the specified element identified by
 its string.
 The element must be existing otherwise it raise an error.
\end_layout

\begin_layout Subsection*
Query for a valid element
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
LOGICAL FUNCTION xios_is_valid_element(id)
\end_layout

\begin_layout LyX-Code
CHARACTER(len = *) , INTENT(IN) :: id
\end_layout

\begin_layout Standard
where element is one of the existing element or group of element.
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
id
\end_layout

\end_inset

: string identifier.
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This function return .TRUE.
 if the element defined by the string identifier id is existing in the data
 base, otherwise it return .FALSE.
 .
\end_layout

\begin_layout Subsection*
Adding child
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_add_element(parent_handle, child_handle, child_id)
\end_layout

\begin_layout LyX-Code
TYPE(xios_element)         , INTENT(IN) :: parent_handle
\end_layout

\begin_layout LyX-Code
TYPE(xios_element)         , INTENT(OUT):: child_handle
\end_layout

\begin_layout LyX-Code
CHARACTER(len = *), OPTIONAL, INTENT(IN) :: child_id
\end_layout

\begin_layout Standard
where element is one of the existing element or group of element.
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
parent_handle
\end_layout

\end_inset

: handle of the parent element.
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
child_handle
\end_layout

\end_inset

: handle of the child element.
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
child_id
\end_layout

\end_inset

: string identifier of the child.
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This subroutine add a child to an existing parent element.
 The identifier of the child, if existing, can be specified optionally.
 All group elements can contains child of the same kind, provided generic
 inheritance.
 Some elements can contains children of an other kind for a specific behaviour.
 File element may contains field_group, field, variable and variable_group
 child elements.
 Field elements may contains variable_group of variable child element.
\end_layout

\begin_layout Subsection*
Query if a value of an element attributes is defined (by handle)
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_is_defined_attr(handle, attr_1=attribute_1, attr_2=attribute_2,
 ...)
\end_layout

\begin_layout LyX-Code
TYPE(xios_element)         , INTENT(IN) :: handle
\end_layout

\begin_layout LyX-Code
LOGICAL, OPTIONAL  , INTENT(OUT) :: attr_1
\end_layout

\begin_layout LyX-Code
LOGICAL, OPTIONAL  , INTENT(OUT) :: attr_2
\end_layout

\begin_layout LyX-Code
....
\end_layout

\begin_layout Standard
where element is one of the existing element or group of element.
 attribute_x is describing in the chapter dedicated to the attribute description.
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
handle
\end_layout

\end_inset

: element handle.
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
attr_x
\end_layout

\end_inset

: return true if the attribute as a defined value.
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This subroutine my be used to query if one or more attributes of an element
 have a defined value.
 The list of attributes and their type are described in a specific chapter
 of the documentation.
 
\end_layout

\begin_layout Subsection*
Query if a value of an element attributes is defined (by identifier)
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_is_defined_element_attr(id, attr_1=attribute_1, attr_2=attribute
_2, ...)
\end_layout

\begin_layout LyX-Code
CHARACTER(len = *) , INTENT(IN) :: id
\end_layout

\begin_layout LyX-Code
LOGICAL, OPTIONAL  , INTENT(OUT) :: attr_1
\end_layout

\begin_layout LyX-Code
LOGICAL, OPTIONAL  , INTENT(OUT) :: attr_2
\end_layout

\begin_layout LyX-Code
....
\end_layout

\begin_layout Standard
where element is one of the existing element or group of element.
 attribute_x is describing in the chapter dedicated to the attribute description.
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
id
\end_layout

\end_inset

: element identifier.
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
attr_x
\end_layout

\end_inset

: return true if the attribute as a defined value.
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This subroutine my be used to query if one or more attributes of an element
 have a defined value.
 The list of available attributes and their type are described in a specific
 chapter of the documentation.
 
\end_layout

\begin_layout Subsection*
Setting element attributes value by handle
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_set_attr(handle, attr_1=attribute_1, attr_2=attribute_2,
 ...)
\end_layout

\begin_layout LyX-Code
TYPE(xios_element)         , INTENT(IN) :: handle
\end_layout

\begin_layout LyX-Code
attribute_type_1, OPTIONAL  , INTENT(IN) :: attr_1
\end_layout

\begin_layout LyX-Code
attribute_type_2, OPTIONAL  , INTENT(IN) :: attr_2
\end_layout

\begin_layout LyX-Code
....
\end_layout

\begin_layout Standard
where element is one of the existing element or group of element.
 attribute_x and attribute_type_x are describing in the chapter dedicated
 to the attribute description.
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
handle
\end_layout

\end_inset

: element handle.
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
attr_x
\end_layout

\end_inset

: value of the attribute to be set.
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This subroutine my be used to set one or more attribute to an element defined
 by its handle.
 The list of available attributes and their type are described in a specific
 chapter of the documentation.
 
\end_layout

\begin_layout Subsection*
Setting element attributes value by id
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_set_element_attr(id, attr_1=attribute_1, attr_2=attribute_2,
 ...)
\end_layout

\begin_layout LyX-Code
CHARACTER(len = *),  INTENT(IN)          :: id
\end_layout

\begin_layout LyX-Code
attribute_type_1, OPTIONAL  , INTENT(IN) :: attr_1
\end_layout

\begin_layout LyX-Code
attribute_type_2, OPTIONAL  , INTENT(IN) :: attr_2
\end_layout

\begin_layout LyX-Code
....
\end_layout

\begin_layout Standard
where element is one of the existing element or group of element.
 attribute_x and attribute_type_x are describing in the chapter dedicated
 to the attribute description.
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
id
\end_layout

\end_inset

: string identifier.
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
attr_x
\end_layout

\end_inset

: value of the attribute to be set.
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This subroutine my be used to set one or more attribute to an element defined
 by its string id.
 The list of available attributes and their type are described in a specific
 chapter of the documentation.
\end_layout

\begin_layout Subsection*
Getting element attributes value (by handle)
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_get_attr(handle, attr_1=attribute_1, attr_2=attribute_2,
 ...)
\end_layout

\begin_layout LyX-Code
TYPE(xios_element)         , INTENT(IN) :: handle
\end_layout

\begin_layout LyX-Code
attribute_type_1, OPTIONAL  , INTENT(OUT) :: attr_1
\end_layout

\begin_layout LyX-Code
attribute_type_2, OPTIONAL  , INTENT(OUT) :: attr_2
\end_layout

\begin_layout LyX-Code
....
\end_layout

\begin_layout Standard
where element is one of the existing element or group of element.
 attribute_x and attribute_type_x are describing in the chapter dedicated
 to the attribute description.
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
handle
\end_layout

\end_inset

: element handle.
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
attr_x
\end_layout

\end_inset

: value of the attribute to be get.
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This subroutine my be used to get one or more attribute value of an element
 defined by its handle.
 All attributes in the arguments list must be defined.
 The list of available attributes and their type are described in a specific
 chapter of the documentation.
 
\end_layout

\begin_layout Subsection*
Getting element attributes value (by identifier)
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_get_element_attr(id, attr_1=attribute_1, attr_2=attribute_2,
 ...)
\end_layout

\begin_layout LyX-Code
CHARACTER(len = *),   INTENT(IN)          :: id
\end_layout

\begin_layout LyX-Code
attribute_type_1, OPTIONAL  , INTENT(OUT) :: attr_1
\end_layout

\begin_layout LyX-Code
attribute_type_2, OPTIONAL  , INTENT(OUT) :: attr_2
\end_layout

\begin_layout LyX-Code
....
\end_layout

\begin_layout Standard
where element is one of the existing element or group of element.
 attribute_x is describing in the chapter dedicated to the attribute description.
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
id
\end_layout

\end_inset

: element string identifier.
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
attr_x
\end_layout

\end_inset

: value of the attribute to be get.
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This subroutine my be used to get one or more attribute value of an element
 defined by its handle.
 All attributes in the arguments list must have a defined value.
 The list of available attributes and their type are described in a specific
 chapter of the documentation.
\end_layout

\begin_layout Section*
Interface relative to context management
\end_layout

\begin_layout Subsection*
XIOS context initialization
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_context_initialize(context_id, context_comm)
\end_layout

\begin_layout LyX-Code
  CHARACTER(LEN=*),INTENT(IN)         :: context_id
\end_layout

\begin_layout LyX-Code
  INTEGER,INTENT(IN)                  :: context_comm
\end_layout

\begin_layout Subsubsection*
Argument:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
context_id
\end_layout

\end_inset

: context identifier
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
context_comm
\end_layout

\end_inset

: MPI communicator of the context
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This subroutine initialize a context identified by 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
context_id
\end_layout

\end_inset

 string and must be called before any call related to this context.
 A context must be associated to a communicator, which can be the returned
 communicator of the 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_initialize
\end_layout

\end_inset

 subroutine or a sub-communicator of this.
 The context initialization is dynamic and can be done at any time before
 the 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_finalize
\end_layout

\end_inset

 call.
\end_layout

\begin_layout Subsection*
XIOS context finalization
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_context_finalize()
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Standard
None
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This subroutine must be call to close a context, before the 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_finalize
\end_layout

\end_inset

 call.
 It waits until that all pending request sent to the servers will be processed
 and the opened files will be closed.
\end_layout

\begin_layout Subsection*
Setting current active context
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_set_current_context(context_handle)
\end_layout

\begin_layout LyX-Code
TYPE(xios_context),INTENT(IN) :: context_handle
\end_layout

\begin_layout Standard
or
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_set_current_context(context_id)
\end_layout

\begin_layout LyX-Code
CHARACTER(LEN=*),INTENT(IN) :: context_id
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
context_handle
\end_layout

\end_inset

: handle of the context
\end_layout

\begin_layout Standard
or
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
context_id
\end_layout

\end_inset

: string context identifier
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
These subroutines set the current active context.
 All xios calls after will refer to this active context.
 If only one context is defined, it is automatically set as the active context.
 
\end_layout

\begin_layout Subsection*
Closing definition
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_close_context_definition()
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Standard
None
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This subroutine must be call when all definitions of a context is finished
 at the end of the initialization and before entering to the time loop.
 A lot of operations are performed internally (inheritance, grid definition,
 contacting servers,...) so this call is mandatory.
 Any call related to the tree management definition done after will have
 an undefined effect.
\end_layout

\begin_layout Section*
Interface relative to calendar management
\end_layout

\begin_layout Subsection*
Creating the calendar
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_define_calendar(type, timestep, start_date, time_origin,
 &
\begin_inset Newline newline
\end_inset

                                day_length, month_lengths, year_length,
 &
\begin_inset Newline newline
\end_inset

                                leap_year_month, leap_year_drift, &
\begin_inset Newline newline
\end_inset

                                leap_year_drift_offset)
\begin_inset Newline newline
\end_inset

CHARACTER(len = *),              INTENT(IN) :: type
\begin_inset Newline newline
\end_inset

TYPE(xios_duration),   OPTIONAL, INTENT(IN) :: timestep
\begin_inset Newline newline
\end_inset

TYPE(xios_date),       OPTIONAL, INTENT(IN) :: start_date
\begin_inset Newline newline
\end_inset

TYPE(xios_date),       OPTIONAL, INTENT(IN) :: time_origin
\begin_inset Newline newline
\end_inset

INTEGER,               OPTIONAL, INTENT(IN) :: day_length
\begin_inset Newline newline
\end_inset

INTEGER,               OPTIONAL, INTENT(IN) :: month_lengths(:)
\begin_inset Newline newline
\end_inset

INTEGER,               OPTIONAL, INTENT(IN) :: year_length
\begin_inset Newline newline
\end_inset

DOUBLE PRECISION,      OPTIONAL, INTENT(IN) :: leap_year_drift
\begin_inset Newline newline
\end_inset

DOUBLE PRECISION,      OPTIONAL, INTENT(IN) :: leap_year_drift_offset
\begin_inset Newline newline
\end_inset

INTEGER,               OPTIONAL, INTENT(IN) :: leap_year_month
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
type
\end_layout

\end_inset

: the calendar type, one of 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
"Gregorian"
\end_layout

\end_inset

, 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
"Julian"
\end_layout

\end_inset

, 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
"D360"
\end_layout

\end_inset

, 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
"AllLeap"
\end_layout

\end_inset

, 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
"NoLeap"
\end_layout

\end_inset

, 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
"user_defined"
\end_layout

\end_inset


\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
timestep
\end_layout

\end_inset

: the time step of the simulation (optional, can be set later)
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
start_date
\end_layout

\end_inset

: the start date of the simulation (optional, 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_date(0000, 01, 01, 00, 00, 00)
\end_layout

\end_inset

 is used by default)
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
time_origin
\end_layout

\end_inset

: the origin of the time axis (optional, 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_date(0000, 01, 01, 00, 00, 00)
\end_layout

\end_inset

 is used by default)
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
day_length
\end_layout

\end_inset

: the length of a day in seconds (mandatory when creating an user defined
 calendar, must not be set otherwise)
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
month_lengths
\end_layout

\end_inset

: the length of each month of the year in days (either 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
month_lengths
\end_layout

\end_inset

 or 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
year_length
\end_layout

\end_inset

 must be set when creating an user defined calendar, must not be set otherwise)
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
year_length
\end_layout

\end_inset

: the length of a year in seconds (either 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
month_lengths
\end_layout

\end_inset

 or 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
year_length
\end_layout

\end_inset

 must be set when creating an user defined calendar, must not be set otherwise)
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
leap_year_drift
\end_layout

\end_inset

: the yearly drift between the user defined calendar and the astronomical
 calendar, expressed as a fraction of day (can optionally be set when creating
 an user defined calendar in which case 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
leap_year_month
\end_layout

\end_inset

 must be set too)
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
leap_year_drift_offset
\end_layout

\end_inset

: the initial drift between the user defined calendar and the astronomical
 calendar at the time origin, expressed as a fraction of day (can optionally
 be set if 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
leap_year_drift
\end_layout

\end_inset

 and 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
leap_year_month
\end_layout

\end_inset

 are set)
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
leap_year_month
\end_layout

\end_inset

: the month to which an extra day must be added in case of leap year (can
 optionally be set when creating an user defined calendar in which case
 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
leap_year_drift
\end_layout

\end_inset

 must be set too)
\end_layout

\begin_layout Standard
For a more detailed description of those arguments, see the description
 of the corresponding attributes in section 1.2 
\begin_inset Quotes eld
\end_inset

Calendar attribute reference
\begin_inset Quotes erd
\end_inset

.
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This subroutine creates the calendar for the current context.
 Note that the calendar is created once and for all, either from the XML
 configuration file or the Fortran interface.
 If it was not created from the configuration file, then this subroutine
 must be called once and only once before the context definition is closed.
 The calendar features can be used immediately after the calendar was created.
\begin_inset Newline newline
\end_inset


\begin_inset Newline newline
\end_inset

If an user defined calendar is created, the following arguments must also
 be provided:
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
day_length
\end_layout

\end_inset

 and either 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
month_lengths
\end_layout

\end_inset

 or 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
year_length
\end_layout

\end_inset

.
 Optionally it is possible to configure the user defined calendar to have
 leap years.
 In this case, 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
leap_year_drift
\end_layout

\end_inset

 and 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
leap_year_month
\end_layout

\end_inset

 must also be provided and 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
leap_year_drift_offset
\end_layout

\end_inset

 might be used.
\end_layout

\begin_layout Subsection*
Accessing the calendar type of the current calendar
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_get_calendar_type(calendar_type)
\begin_inset Newline newline
\end_inset

CHARACTER(len=*), INTENT(OUT) :: calendar_type
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
calendar_type
\end_layout

\end_inset

: on output, the type of the calendar attached to the current context
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This subroutine gets the calendar type associated to the current context.
 It will raise an error if used before the calendar was created.
\end_layout

\begin_layout Subsection*
Accessing and defining the time step of the current calendar
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_get_timestep(timestep)
\begin_inset Newline newline
\end_inset

TYPE(xios_duration), INTENT(OUT) :: timestep
\end_layout

\begin_layout Standard
and
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_set_timestep(timestep)
\begin_inset Newline newline
\end_inset

TYPE(xios_duration), INTENT(IN) :: timestep
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
timestep
\end_layout

\end_inset

: a duration corresponding to the time step of the simulation
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
Those subroutines respectively gets and sets the time step associated to
 the calendar of the current context.
 Note that the time step must always be set before the context definition
 is closed and that an error will be raised if the getter subroutine is
 used before the time step is defined.
\end_layout

\begin_layout Subsection*
Accessing and defining the start date of the current calendar
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_get_start_date(start_date)
\begin_inset Newline newline
\end_inset

TYPE(xios_date), INTENT(OUT) :: start_date
\end_layout

\begin_layout Standard
and
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_set_start_date(start_date)
\begin_inset Newline newline
\end_inset

TYPE(xios_date), INTENT(IN) :: start_date
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
start_date
\end_layout

\end_inset

: a date corresponding to the beginning of the simulation
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
Those subroutines respectively gets and sets the start date associated to
 the calendar of the current context.
 They must not be used before the calendar was created.
\end_layout

\begin_layout Subsection*
Accessing and defining the time origin of the current calendar
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_get_time_origin(time_origin)
\begin_inset Newline newline
\end_inset

TYPE(xios_date), INTENT(OUT) :: time_origin
\end_layout

\begin_layout Standard
and
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_set_time_date(time_origin)
\begin_inset Newline newline
\end_inset

TYPE(xios_date), INTENT(IN) :: time_origin
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
start_date
\end_layout

\end_inset

: a date corresponding to the origin of the time axis
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
Those subroutines respectively gets and sets the origin of time associated
 to the calendar of the current context.
 They must not be used before the calendar was created.
\end_layout

\begin_layout Subsection*
Updating the current date of the current calendar
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_update_calendar(step)
\begin_inset Newline newline
\end_inset

INTEGER, INTENT(IN) :: step
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
step
\end_layout

\end_inset

: the current iteration number
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This subroutine sets the current date associated to the calendar of the
 current context based on the current iteration number: 
\begin_inset Formula $current\_date=start\_date+step\times timestep$
\end_inset

.
 It must not be used before the calendar was created.
\end_layout

\begin_layout Subsection*
Accessing the current date of the current calendar
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
SUBROUTINE xios_get_current_date(current_date)
\begin_inset Newline newline
\end_inset

TYPE(xios_date), INTENT(OUT) :: current_date
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
current_date
\end_layout

\end_inset

: on output, the current date
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This subroutine gets the current date associated to the calendar of the
 current context.
 It must not be used before the calendar was created.
\end_layout

\begin_layout Subsection*
Accessing the year length of the current calendar
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
INTEGER FUNCTION xios_get_year_length_in_seconds(year)
\begin_inset Newline newline
\end_inset

INTEGER, INTENT(IN) :: year
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
year
\end_layout

\end_inset

: the year whose length is requested
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This function returns the duration in seconds of the specified year, taking
 leap years into account based on the calendar of the current context.
 It must not be used before the calendar was created.
\end_layout

\begin_layout Subsection*
Accessing the day length of the current calendar
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
INTEGER FUNCTION xios_get_day_length_in_seconds()
\end_layout

\begin_layout Subsubsection*
Arguments: None
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This function returns the duration in seconds of a day, based on the calendar
 of the current context.
 It must not be used before the calendar was created.
\end_layout

\begin_layout Section*
Interface relative to duration handling
\end_layout

\begin_layout Subsection*
Duration constants
\end_layout

\begin_layout Standard
Some duration constants are available to ease duration handling:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_year
\end_layout

\end_inset


\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_month
\end_layout

\end_inset


\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_day
\end_layout

\end_inset


\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_hour
\end_layout

\end_inset


\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_minute
\end_layout

\end_inset


\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_second
\end_layout

\end_inset


\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_timestep
\end_layout

\end_inset


\end_layout

\begin_layout Subsection*
Arithmetic operations on durations
\end_layout

\begin_layout Standard
The following arithmetic operations on durations are available:
\end_layout

\begin_layout Itemize
Addition: 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_duration = xios_duration + xios_duration
\end_layout

\end_inset


\end_layout

\begin_layout Itemize
Subtraction: 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_duration = xios_duration - xios_duration
\end_layout

\end_inset


\end_layout

\begin_layout Itemize
Multiplication by a scalar value: 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_duration = scalar * xios_duration
\end_layout

\end_inset

 or 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_duration = xios_duration * scalar
\end_layout

\end_inset


\end_layout

\begin_layout Itemize
Negation: 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_duration = -xios_duration
\end_layout

\end_inset


\end_layout

\begin_layout Subsection*
Comparison operations on durations
\end_layout

\begin_layout Standard
The following comparison operations on durations are available:
\end_layout

\begin_layout Itemize
Equality: 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
LOGICAL = xios_duration == xios_duration
\end_layout

\end_inset


\end_layout

\begin_layout Itemize
Inequality: 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
LOGICAL = xios_duration /= xios_duration
\end_layout

\end_inset


\end_layout

\begin_layout Section*
Interface relative to date handling
\end_layout

\begin_layout Subsection*
Arithmetic operations on dates
\end_layout

\begin_layout Standard
The following arithmetic operations on dates are available:
\end_layout

\begin_layout Itemize
Addition of a duration: 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_date = xios_date + xios_duration
\end_layout

\end_inset


\end_layout

\begin_layout Itemize
Subtraction of a duration: 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_date = xios_date - xios_duration
\end_layout

\end_inset


\end_layout

\begin_layout Itemize
Subtraction of two dates: 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
xios_duration = xios_date - xios_date
\end_layout

\end_inset


\end_layout

\begin_layout Subsection*
Comparison operations on dates
\end_layout

\begin_layout Standard
The following comparison operations on dates are available:
\end_layout

\begin_layout Itemize
Equality: 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
LOGICAL = xios_date == xios_date
\end_layout

\end_inset


\end_layout

\begin_layout Itemize
Inequality: 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
LOGICAL = xios_date /= xios_date
\end_layout

\end_inset


\end_layout

\begin_layout Itemize
Less than: 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
LOGICAL = xios_date < xios_date
\end_layout

\end_inset


\end_layout

\begin_layout Itemize
Less or equal: 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
LOGICAL = xios_date <= xios_date
\end_layout

\end_inset


\end_layout

\begin_layout Itemize
Greater than: 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
LOGICAL = xios_date > xios_date
\end_layout

\end_inset


\end_layout

\begin_layout Itemize
Greater or equal: 
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
LOGICAL = xios_date >= xios_date
\end_layout

\end_inset


\end_layout

\begin_layout Subsection*
Converting a date to a number of seconds since the time origin
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
FUNCTION INTEGER(kind = 8) xios_date_convert_to_seconds(date)
\begin_inset Newline newline
\end_inset

TYPE(xios_date), INTENT(IN) :: date
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
date
\end_layout

\end_inset

: the date to convert
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This function returns the number of seconds since the time origin for the
 specified date, based on the calendar of the current context.
 It must not be used before the calendar was created.
\end_layout

\begin_layout Subsection*
Converting a date to a number of seconds since the beginning of the year
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
FUNCTION INTEGER xios(date_get_second_of_year)(date)
\begin_inset Newline newline
\end_inset

TYPE(xios_date), INTENT(IN) :: date
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
date
\end_layout

\end_inset

: the date to convert
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This function returns the number of seconds since the beginning of the year
 for the specified date, based on the calendar of the current context.
 It must not be used before the calendar was created.
\end_layout

\begin_layout Subsection*
Converting a date to a number of days since the beginning of the year
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
FUNCTION DOUBLE_PRECISION xios_date_get_day_of_year(date)
\begin_inset Newline newline
\end_inset

TYPE(xios_date), INTENT(IN) :: date
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
date
\end_layout

\end_inset

: the date to convert
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This function returns the number of days since the beginning of the year
 for the specified date, based on the calendar of the current context.
 It must not be used before the calendar was created.
\end_layout

\begin_layout Subsection*
Converting a date to a fraction of the current year
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
FUNCTION DOUBLE_PRECISION xios_date_get_fraction_of_year(date)
\begin_inset Newline newline
\end_inset

TYPE(xios_date), INTENT(IN) :: date
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
date
\end_layout

\end_inset

: the date to convert
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This function returns the fraction of year corresponding to the specified
 date, based on the calendar of the current context.
 It must not be used before the calendar was created.
\end_layout

\begin_layout Subsection*
Converting a date to a number of seconds since the beginning of the day
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
FUNCTION INTEGER xios(date_get_second_of_day)(date)
\begin_inset Newline newline
\end_inset

TYPE(xios_date), INTENT(IN) :: date
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
date
\end_layout

\end_inset

: the date to convert
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This function returns the number of seconds since the beginning of the day
 for the specified date, based on the calendar of the current context.
 It must not be used before the calendar was created.
\end_layout

\begin_layout Subsection*
Converting a date to a fraction of the current day
\end_layout

\begin_layout Subsubsection*
Synopsis:
\end_layout

\begin_layout LyX-Code
FUNCTION DOUBLE_PRECISION xios_date_get_fraction_of_day(date)
\begin_inset Newline newline
\end_inset

TYPE(xios_date), INTENT(IN) :: date
\end_layout

\begin_layout Subsubsection*
Arguments:
\end_layout

\begin_layout Itemize
\begin_inset Flex Code
status collapsed

\begin_layout Plain Layout
date
\end_layout

\end_inset

: the date to convert
\end_layout

\begin_layout Subsubsection*
Description:
\end_layout

\begin_layout Standard
This function returns the fraction of day corresponding to the specified
 date, based on the calendar of the current context.
 It must not be used before the calendar was created.
\end_layout

\end_body
\end_document