[219] | 1 | #include "nc4_data_output.hpp" |
---|
| 2 | |
---|
| 3 | #include <boost/lexical_cast.hpp> |
---|
[352] | 4 | #include "attribute_template.hpp" |
---|
| 5 | #include "group_template.hpp" |
---|
[219] | 6 | |
---|
| 7 | #include "file.hpp" |
---|
| 8 | #include "calendar.hpp" |
---|
[278] | 9 | #include "context.hpp" |
---|
[300] | 10 | #include "context_server.hpp" |
---|
[498] | 11 | #include "netCdfException.hpp" |
---|
| 12 | #include "exception.hpp" |
---|
[219] | 13 | |
---|
[335] | 14 | namespace xios |
---|
[219] | 15 | { |
---|
[878] | 16 | /// ////////////////////// Dfinitions ////////////////////// /// |
---|
[219] | 17 | CNc4DataOutput::CNc4DataOutput |
---|
| 18 | (const StdString & filename, bool exist) |
---|
| 19 | : SuperClass() |
---|
| 20 | , SuperClassWriter(filename, exist) |
---|
| 21 | , filename(filename) |
---|
| 22 | { |
---|
[989] | 23 | SuperClass::type = MULTI_FILE; |
---|
[219] | 24 | } |
---|
| 25 | |
---|
| 26 | CNc4DataOutput::CNc4DataOutput |
---|
[878] | 27 | (const StdString & filename, bool exist, bool useClassicFormat, bool useCFConvention, |
---|
[924] | 28 | MPI_Comm comm_file, bool multifile, bool isCollective, const StdString& timeCounterName) |
---|
[219] | 29 | : SuperClass() |
---|
[878] | 30 | , SuperClassWriter(filename, exist, useClassicFormat, useCFConvention, &comm_file, multifile, timeCounterName) |
---|
[379] | 31 | , comm_file(comm_file) |
---|
[219] | 32 | , filename(filename) |
---|
[335] | 33 | , isCollective(isCollective) |
---|
[219] | 34 | { |
---|
[989] | 35 | SuperClass::type = (multifile) ? MULTI_FILE : ONE_FILE; |
---|
[219] | 36 | } |
---|
| 37 | |
---|
| 38 | CNc4DataOutput::~CNc4DataOutput(void) |
---|
[879] | 39 | { /* Ne rien faire de plus */ } |
---|
[219] | 40 | |
---|
| 41 | ///-------------------------------------------------------------- |
---|
| 42 | |
---|
| 43 | const StdString & CNc4DataOutput::getFileName(void) const |
---|
| 44 | { |
---|
| 45 | return (this->filename); |
---|
| 46 | } |
---|
| 47 | |
---|
| 48 | //--------------------------------------------------------------- |
---|
| 49 | |
---|
[347] | 50 | void CNc4DataOutput::writeDomain_(CDomain* domain) |
---|
[219] | 51 | { |
---|
[881] | 52 | if (domain->type == CDomain::type_attr::unstructured) |
---|
| 53 | { |
---|
| 54 | if (SuperClassWriter::useCFConvention) |
---|
| 55 | writeUnstructuredDomain(domain) ; |
---|
| 56 | else |
---|
| 57 | writeUnstructuredDomainUgrid(domain) ; |
---|
| 58 | return ; |
---|
| 59 | } |
---|
[488] | 60 | |
---|
[347] | 61 | CContext* context = CContext::getCurrent() ; |
---|
[300] | 62 | CContextServer* server=context->server ; |
---|
[488] | 63 | |
---|
[219] | 64 | if (domain->IsWritten(this->filename)) return; |
---|
| 65 | domain->checkAttributes(); |
---|
[488] | 66 | |
---|
| 67 | if (domain->isEmpty()) |
---|
[881] | 68 | if (SuperClass::type==MULTI_FILE) return; |
---|
[219] | 69 | |
---|
| 70 | std::vector<StdString> dim0, dim1; |
---|
[772] | 71 | StdString domid = domain->getDomainOutputName(); |
---|
[318] | 72 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
---|
[706] | 73 | if (isWrittenDomain(domid)) return ; |
---|
[774] | 74 | else setWrittenDomain(domid); |
---|
[449] | 75 | |
---|
| 76 | |
---|
[1045] | 77 | StdString dimXid, dimYid ; |
---|
[488] | 78 | |
---|
[1045] | 79 | nc_type typePrec ; |
---|
| 80 | if (domain->prec.isEmpty()) typePrec = NC_FLOAT ; |
---|
| 81 | else if (domain->prec==4) typePrec = NC_FLOAT ; |
---|
| 82 | else if (domain->prec==8) typePrec = NC_DOUBLE ; |
---|
| 83 | |
---|
[664] | 84 | bool isRegularDomain = (domain->type == CDomain::type_attr::rectilinear); |
---|
[449] | 85 | switch (domain->type) |
---|
[433] | 86 | { |
---|
[449] | 87 | case CDomain::type_attr::curvilinear : |
---|
| 88 | dimXid = StdString("x").append(appendDomid); |
---|
| 89 | dimYid = StdString("y").append(appendDomid); |
---|
| 90 | break ; |
---|
[664] | 91 | case CDomain::type_attr::rectilinear : |
---|
[449] | 92 | dimXid = StdString("lon").append(appendDomid); |
---|
| 93 | dimYid = StdString("lat").append(appendDomid); |
---|
| 94 | break; |
---|
[488] | 95 | } |
---|
| 96 | |
---|
[617] | 97 | StdString dimVertId = StdString("nvertex").append(appendDomid); |
---|
| 98 | |
---|
[449] | 99 | string lonid,latid,bounds_lonid,bounds_latid ; |
---|
[611] | 100 | string areaId = "area" + appendDomid; |
---|
[391] | 101 | /* |
---|
[300] | 102 | StdString lonid_loc = (server->intraCommSize > 1) |
---|
[318] | 103 | ? StdString("lon").append(appendDomid).append("_local") |
---|
[278] | 104 | : lonid; |
---|
[300] | 105 | StdString latid_loc = (server->intraCommSize > 1) |
---|
[318] | 106 | ? StdString("lat").append(appendDomid).append("_local") |
---|
[278] | 107 | : latid; |
---|
[391] | 108 | */ |
---|
[219] | 109 | |
---|
[498] | 110 | try |
---|
[219] | 111 | { |
---|
[498] | 112 | switch (SuperClass::type) |
---|
| 113 | { |
---|
| 114 | case (MULTI_FILE) : |
---|
| 115 | { |
---|
| 116 | // if (domain->isEmpty()) return; |
---|
[488] | 117 | |
---|
[498] | 118 | if (server->intraCommSize > 1) |
---|
| 119 | { |
---|
| 120 | // SuperClassWriter::addDimension(lonid, domain->zoom_ni.getValue()); |
---|
| 121 | // SuperClassWriter::addDimension(latid, domain->zoom_nj.getValue()); |
---|
| 122 | } |
---|
[286] | 123 | |
---|
[498] | 124 | switch (domain->type) |
---|
| 125 | { |
---|
| 126 | case CDomain::type_attr::curvilinear : |
---|
| 127 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
---|
| 128 | lonid = StdString("nav_lon").append(appendDomid); |
---|
| 129 | latid = StdString("nav_lat").append(appendDomid); |
---|
| 130 | break ; |
---|
[664] | 131 | case CDomain::type_attr::rectilinear : |
---|
[498] | 132 | lonid = StdString("lon").append(appendDomid); |
---|
| 133 | latid = StdString("lat").append(appendDomid); |
---|
| 134 | dim0.push_back(dimYid); |
---|
| 135 | dim1.push_back(dimXid); |
---|
| 136 | break; |
---|
| 137 | } |
---|
[488] | 138 | |
---|
[617] | 139 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
---|
| 140 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
---|
| 141 | |
---|
[616] | 142 | SuperClassWriter::addDimension(dimXid, domain->zoom_ni_srv); |
---|
| 143 | SuperClassWriter::addDimension(dimYid, domain->zoom_nj_srv); |
---|
[488] | 144 | |
---|
[617] | 145 | if (domain->hasBounds) |
---|
| 146 | SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
---|
| 147 | |
---|
[498] | 148 | if (server->intraCommSize > 1) |
---|
| 149 | { |
---|
[616] | 150 | this->writeLocalAttributes(domain->zoom_ibegin_srv, |
---|
| 151 | domain->zoom_ni_srv, |
---|
| 152 | domain->zoom_jbegin_srv, |
---|
| 153 | domain->zoom_nj_srv, |
---|
| 154 | appendDomid); |
---|
[488] | 155 | |
---|
[628] | 156 | if (singleDomain) |
---|
| 157 | this->writeLocalAttributes_IOIPSL(dimXid, dimYid, |
---|
| 158 | domain->zoom_ibegin_srv, |
---|
| 159 | domain->zoom_ni_srv, |
---|
| 160 | domain->zoom_jbegin_srv, |
---|
| 161 | domain->zoom_nj_srv, |
---|
| 162 | domain->ni_glo,domain->nj_glo, |
---|
| 163 | server->intraCommRank,server->intraCommSize); |
---|
[449] | 164 | } |
---|
[488] | 165 | |
---|
[665] | 166 | if (domain->hasLonLat) |
---|
[498] | 167 | { |
---|
[665] | 168 | switch (domain->type) |
---|
| 169 | { |
---|
| 170 | case CDomain::type_attr::curvilinear : |
---|
[1045] | 171 | SuperClassWriter::addVariable(latid, typePrec, dim0); |
---|
| 172 | SuperClassWriter::addVariable(lonid, typePrec, dim0); |
---|
[665] | 173 | break ; |
---|
| 174 | case CDomain::type_attr::rectilinear : |
---|
[1045] | 175 | SuperClassWriter::addVariable(latid, typePrec, dim0); |
---|
| 176 | SuperClassWriter::addVariable(lonid, typePrec, dim1); |
---|
[665] | 177 | break ; |
---|
| 178 | } |
---|
[488] | 179 | |
---|
[665] | 180 | this->writeAxisAttributes(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid); |
---|
| 181 | this->writeAxisAttributes(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid); |
---|
[219] | 182 | |
---|
[665] | 183 | if (domain->hasBounds) |
---|
| 184 | { |
---|
| 185 | SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid); |
---|
| 186 | SuperClassWriter::addAttribute("bounds", bounds_latid, &latid); |
---|
[617] | 187 | |
---|
[665] | 188 | dim0.clear(); |
---|
| 189 | dim0.push_back(dimYid); |
---|
| 190 | dim0.push_back(dimXid); |
---|
| 191 | dim0.push_back(dimVertId); |
---|
[1045] | 192 | SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0); |
---|
| 193 | SuperClassWriter::addVariable(bounds_latid, typePrec, dim0); |
---|
[665] | 194 | } |
---|
[617] | 195 | } |
---|
| 196 | |
---|
[498] | 197 | dim0.clear(); |
---|
[616] | 198 | dim0.push_back(dimYid); |
---|
[498] | 199 | dim0.push_back(dimXid); |
---|
[219] | 200 | |
---|
| 201 | |
---|
[498] | 202 | // supress mask if (server->intraCommSize > 1) |
---|
| 203 | // supress mask { |
---|
| 204 | // supress mask SuperClassWriter::addVariable(maskid, NC_INT, dim0); |
---|
| 205 | // supress mask |
---|
| 206 | // supress mask this->writeMaskAttributes(maskid, |
---|
| 207 | // supress mask domain->data_dim.getValue()/*, |
---|
| 208 | // supress mask domain->data_ni.getValue(), |
---|
| 209 | // supress mask domain->data_nj.getValue(), |
---|
| 210 | // supress mask domain->data_ibegin.getValue(), |
---|
| 211 | // supress mask domain->data_jbegin.getValue()*/); |
---|
| 212 | // supress mask } |
---|
[488] | 213 | |
---|
[498] | 214 | //SuperClassWriter::setDefaultValue(maskid, &dvm); |
---|
[219] | 215 | |
---|
[611] | 216 | if (domain->hasArea) |
---|
| 217 | { |
---|
[1045] | 218 | SuperClassWriter::addVariable(areaId, typePrec, dim0); |
---|
[614] | 219 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
---|
[611] | 220 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
---|
| 221 | } |
---|
| 222 | |
---|
[498] | 223 | SuperClassWriter::definition_end(); |
---|
[449] | 224 | |
---|
[665] | 225 | if (domain->hasLonLat) |
---|
[498] | 226 | { |
---|
[665] | 227 | switch (domain->type) |
---|
| 228 | { |
---|
| 229 | case CDomain::type_attr::curvilinear : |
---|
| 230 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0); |
---|
| 231 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0); |
---|
| 232 | break; |
---|
| 233 | case CDomain::type_attr::rectilinear : |
---|
| 234 | CArray<double,1> lat = domain->latvalue_srv(Range(fromStart,toEnd,domain->zoom_ni_srv)) ; |
---|
| 235 | SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0); |
---|
| 236 | CArray<double,1> lon=domain->lonvalue_srv(Range(0,domain->zoom_ni_srv-1)) ; |
---|
| 237 | SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0); |
---|
| 238 | break; |
---|
| 239 | } |
---|
[611] | 240 | |
---|
[665] | 241 | if (domain->hasBounds) |
---|
| 242 | { |
---|
| 243 | SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0); |
---|
| 244 | SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0); |
---|
| 245 | } |
---|
[617] | 246 | } |
---|
| 247 | |
---|
[611] | 248 | if (domain->hasArea) |
---|
| 249 | SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0); |
---|
| 250 | |
---|
[498] | 251 | SuperClassWriter::definition_start(); |
---|
[219] | 252 | |
---|
[498] | 253 | break; |
---|
| 254 | } |
---|
| 255 | case (ONE_FILE) : |
---|
| 256 | { |
---|
[631] | 257 | SuperClassWriter::addDimension(dimXid, domain->global_zoom_ni); |
---|
| 258 | SuperClassWriter::addDimension(dimYid, domain->global_zoom_nj); |
---|
[286] | 259 | |
---|
[617] | 260 | if (domain->hasBounds) |
---|
| 261 | SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
---|
| 262 | |
---|
[665] | 263 | if (domain->hasLonLat) |
---|
[498] | 264 | { |
---|
[665] | 265 | switch (domain->type) |
---|
| 266 | { |
---|
| 267 | case CDomain::type_attr::curvilinear : |
---|
| 268 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
---|
| 269 | lonid = StdString("nav_lon").append(appendDomid); |
---|
| 270 | latid = StdString("nav_lat").append(appendDomid); |
---|
[1045] | 271 | SuperClassWriter::addVariable(latid, typePrec, dim0); |
---|
| 272 | SuperClassWriter::addVariable(lonid, typePrec, dim0); |
---|
[665] | 273 | break; |
---|
[449] | 274 | |
---|
[665] | 275 | case CDomain::type_attr::rectilinear : |
---|
| 276 | dim0.push_back(dimYid); |
---|
| 277 | dim1.push_back(dimXid); |
---|
| 278 | lonid = StdString("lon").append(appendDomid); |
---|
| 279 | latid = StdString("lat").append(appendDomid); |
---|
[1045] | 280 | SuperClassWriter::addVariable(latid, typePrec, dim0); |
---|
| 281 | SuperClassWriter::addVariable(lonid, typePrec, dim1); |
---|
[665] | 282 | break; |
---|
| 283 | } |
---|
| 284 | |
---|
| 285 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
---|
| 286 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
---|
| 287 | |
---|
| 288 | this->writeAxisAttributes |
---|
| 289 | (lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid); |
---|
| 290 | this->writeAxisAttributes |
---|
| 291 | (latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid); |
---|
| 292 | |
---|
| 293 | if (domain->hasBounds) |
---|
| 294 | { |
---|
| 295 | SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid); |
---|
| 296 | SuperClassWriter::addAttribute("bounds", bounds_latid, &latid); |
---|
| 297 | |
---|
| 298 | dim0.clear(); |
---|
[498] | 299 | dim0.push_back(dimYid); |
---|
[665] | 300 | dim0.push_back(dimXid); |
---|
| 301 | dim0.push_back(dimVertId); |
---|
[1045] | 302 | SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0); |
---|
| 303 | SuperClassWriter::addVariable(bounds_latid, typePrec, dim0); |
---|
[665] | 304 | } |
---|
[498] | 305 | } |
---|
[611] | 306 | |
---|
| 307 | if (domain->hasArea) |
---|
| 308 | { |
---|
| 309 | dim0.clear(); |
---|
| 310 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
---|
[1045] | 311 | SuperClassWriter::addVariable(areaId, typePrec, dim0); |
---|
[614] | 312 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
---|
[611] | 313 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
---|
| 314 | dim0.clear(); |
---|
| 315 | } |
---|
| 316 | |
---|
| 317 | SuperClassWriter::definition_end(); |
---|
[286] | 318 | |
---|
[498] | 319 | switch (domain->type) |
---|
[384] | 320 | { |
---|
[498] | 321 | case CDomain::type_attr::curvilinear : |
---|
[449] | 322 | { |
---|
[498] | 323 | std::vector<StdSize> start(2) ; |
---|
| 324 | std::vector<StdSize> count(2) ; |
---|
| 325 | if (domain->isEmpty()) |
---|
| 326 | { |
---|
[611] | 327 | start[0]=0 ; start[1]=0 ; |
---|
[498] | 328 | count[0]=0 ; count[1]=0 ; |
---|
| 329 | } |
---|
| 330 | else |
---|
| 331 | { |
---|
[631] | 332 | start[1]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
| 333 | start[0]=domain->zoom_jbegin_srv-domain->global_zoom_jbegin; |
---|
[498] | 334 | count[1]=domain->zoom_ni_srv ; count[0]=domain->zoom_nj_srv ; |
---|
| 335 | } |
---|
[488] | 336 | |
---|
[665] | 337 | if (domain->hasLonLat) |
---|
| 338 | { |
---|
| 339 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count); |
---|
| 340 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count); |
---|
| 341 | } |
---|
[498] | 342 | break; |
---|
| 343 | } |
---|
[664] | 344 | case CDomain::type_attr::rectilinear : |
---|
[449] | 345 | { |
---|
[665] | 346 | if (domain->hasLonLat) |
---|
[498] | 347 | { |
---|
[665] | 348 | std::vector<StdSize> start(1) ; |
---|
| 349 | std::vector<StdSize> count(1) ; |
---|
| 350 | if (domain->isEmpty()) |
---|
| 351 | { |
---|
| 352 | start[0]=0 ; |
---|
| 353 | count[0]=0 ; |
---|
| 354 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count); |
---|
| 355 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count); |
---|
[449] | 356 | |
---|
[665] | 357 | } |
---|
| 358 | else |
---|
| 359 | { |
---|
| 360 | start[0]=domain->zoom_jbegin_srv-domain->global_zoom_jbegin; |
---|
| 361 | count[0]=domain->zoom_nj_srv ; |
---|
| 362 | CArray<double,1> lat = domain->latvalue_srv(Range(fromStart,toEnd,domain->zoom_ni_srv)) ; |
---|
| 363 | SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0,&start,&count); |
---|
| 364 | |
---|
| 365 | start[0]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
| 366 | count[0]=domain->zoom_ni_srv ; |
---|
| 367 | CArray<double,1> lon=domain->lonvalue_srv(Range(0,domain->zoom_ni_srv-1)) ; |
---|
| 368 | SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0,&start,&count); |
---|
| 369 | } |
---|
[498] | 370 | } |
---|
| 371 | break; |
---|
[449] | 372 | } |
---|
[384] | 373 | } |
---|
[611] | 374 | |
---|
[617] | 375 | if (domain->hasBounds) |
---|
| 376 | { |
---|
| 377 | std::vector<StdSize> start(3); |
---|
| 378 | std::vector<StdSize> count(3); |
---|
| 379 | if (domain->isEmpty()) |
---|
| 380 | { |
---|
| 381 | start[2] = start[1] = start[0] = 0; |
---|
| 382 | count[2] = count[1] = count[0] = 0; |
---|
| 383 | } |
---|
| 384 | else |
---|
| 385 | { |
---|
| 386 | start[2] = 0; |
---|
[631] | 387 | start[1] = domain->zoom_ibegin_srv - domain->global_zoom_ibegin; |
---|
| 388 | start[0] = domain->zoom_jbegin_srv - domain->global_zoom_jbegin; |
---|
[617] | 389 | count[2] = domain->nvertex; |
---|
| 390 | count[1] = domain->zoom_ni_srv; |
---|
| 391 | count[0] = domain->zoom_nj_srv; |
---|
| 392 | } |
---|
[625] | 393 | |
---|
[878] | 394 | SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0, &start, &count); |
---|
| 395 | SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0, &start, &count); |
---|
[617] | 396 | } |
---|
| 397 | |
---|
[611] | 398 | if (domain->hasArea) |
---|
| 399 | { |
---|
| 400 | std::vector<StdSize> start(2); |
---|
| 401 | std::vector<StdSize> count(2); |
---|
| 402 | |
---|
| 403 | if (domain->isEmpty()) |
---|
| 404 | { |
---|
| 405 | start[0] = 0; start[1] = 0; |
---|
| 406 | count[0] = 0; count[1] = 0; |
---|
| 407 | } |
---|
| 408 | else |
---|
| 409 | { |
---|
[631] | 410 | start[1] = domain->zoom_ibegin_srv - domain->global_zoom_ibegin; |
---|
| 411 | start[0] = domain->zoom_jbegin_srv - domain->global_zoom_jbegin; |
---|
[611] | 412 | count[1] = domain->zoom_ni_srv; |
---|
| 413 | count[0] = domain->zoom_nj_srv; |
---|
| 414 | } |
---|
| 415 | |
---|
| 416 | SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0, &start, &count); |
---|
| 417 | } |
---|
| 418 | |
---|
[498] | 419 | SuperClassWriter::definition_start(); |
---|
| 420 | break; |
---|
| 421 | } |
---|
| 422 | default : |
---|
| 423 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
| 424 | << "[ type = " << SuperClass::type << "]" |
---|
| 425 | << " not implemented yet !"); |
---|
| 426 | } |
---|
[449] | 427 | } |
---|
[498] | 428 | catch (CNetCdfException& e) |
---|
| 429 | { |
---|
| 430 | StdString msg("On writing the domain : "); |
---|
| 431 | msg.append(domid); msg.append("\n"); |
---|
| 432 | msg.append("In the context : "); |
---|
| 433 | msg.append(context->getId()); msg.append("\n"); |
---|
| 434 | msg.append(e.what()); |
---|
| 435 | ERROR("CNc4DataOutput::writeDomain_(CDomain* domain)", << msg); |
---|
| 436 | } |
---|
| 437 | |
---|
[449] | 438 | domain->addRelFile(this->filename); |
---|
| 439 | } |
---|
| 440 | |
---|
[879] | 441 | //-------------------------------------------------------------- |
---|
[878] | 442 | |
---|
[879] | 443 | void CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain) |
---|
| 444 | { |
---|
| 445 | CContext* context = CContext::getCurrent() ; |
---|
| 446 | CContextServer* server=context->server ; |
---|
[878] | 447 | |
---|
[879] | 448 | if (domain->IsWritten(this->filename)) return; |
---|
| 449 | domain->checkAttributes(); |
---|
| 450 | if (domain->isEmpty()) |
---|
| 451 | if (SuperClass::type==MULTI_FILE) return ; |
---|
[878] | 452 | |
---|
[1045] | 453 | nc_type typePrec ; |
---|
| 454 | if (domain->prec.isEmpty()) typePrec = NC_FLOAT ; |
---|
| 455 | else if (domain->prec==4) typePrec = NC_FLOAT ; |
---|
| 456 | else if (domain->prec==8) typePrec = NC_DOUBLE ; |
---|
| 457 | |
---|
[879] | 458 | std::vector<StdString> dim0; |
---|
| 459 | StdString domid = domain->getDomainOutputName(); |
---|
| 460 | StdString domainName = domain->name; |
---|
[924] | 461 | domain->assignMesh(domainName, domain->nvertex); |
---|
| 462 | domain->mesh->createMeshEpsilon(server->intraComm, domain->lonvalue_srv, domain->latvalue_srv, domain->bounds_lon_srv, domain->bounds_lat_srv); |
---|
[878] | 463 | |
---|
[879] | 464 | StdString node_x = domainName + "_node_x"; |
---|
| 465 | StdString node_y = domainName + "_node_y"; |
---|
[878] | 466 | |
---|
[879] | 467 | StdString edge_x = domainName + "_edge_x"; |
---|
| 468 | StdString edge_y = domainName + "_edge_y"; |
---|
| 469 | StdString edge_nodes = domainName + "_edge_nodes"; |
---|
[878] | 470 | |
---|
[879] | 471 | StdString face_x = domainName + "_face_x"; |
---|
| 472 | StdString face_y = domainName + "_face_y"; |
---|
| 473 | StdString face_nodes = domainName + "_face_nodes"; |
---|
[902] | 474 | StdString face_edges = domainName + "_face_edges"; |
---|
| 475 | StdString edge_faces = domainName + "_edge_face_links"; |
---|
| 476 | StdString face_faces = domainName + "_face_links"; |
---|
[878] | 477 | |
---|
[879] | 478 | StdString dimNode = "n" + domainName + "_node"; |
---|
| 479 | StdString dimEdge = "n" + domainName + "_edge"; |
---|
| 480 | StdString dimFace = "n" + domainName + "_face"; |
---|
| 481 | StdString dimVertex = "n" + domainName + "_vertex"; |
---|
| 482 | StdString dimTwo = "Two"; |
---|
[878] | 483 | |
---|
[879] | 484 | if (!SuperClassWriter::dimExist(dimTwo)) SuperClassWriter::addDimension(dimTwo, 2); |
---|
| 485 | if (!isWrittenDomain(domid)) |
---|
| 486 | { |
---|
| 487 | dim0.clear(); |
---|
| 488 | SuperClassWriter::addVariable(domainName, NC_INT, dim0); |
---|
| 489 | SuperClassWriter::addAttribute("cf_role", StdString("mesh_topology"), &domainName); |
---|
[924] | 490 | SuperClassWriter::addAttribute("long_name", StdString("Topology data of 2D unstructured mesh"), &domainName); |
---|
| 491 | SuperClassWriter::addAttribute("topology_dimension", 2, &domainName); |
---|
[879] | 492 | SuperClassWriter::addAttribute("node_coordinates", node_x + " " + node_y, &domainName); |
---|
| 493 | } |
---|
[878] | 494 | |
---|
[879] | 495 | try |
---|
| 496 | { |
---|
| 497 | switch (SuperClass::type) |
---|
| 498 | { |
---|
| 499 | case (ONE_FILE) : |
---|
| 500 | { |
---|
| 501 | // Adding nodes |
---|
| 502 | if (domain->nvertex == 1) |
---|
| 503 | { |
---|
| 504 | if (!SuperClassWriter::varExist(node_x) || !SuperClassWriter::varExist(node_y)) |
---|
| 505 | { |
---|
[902] | 506 | SuperClassWriter::addDimension(dimNode, domain->ni_glo); |
---|
[879] | 507 | dim0.clear(); |
---|
| 508 | dim0.push_back(dimNode); |
---|
[1045] | 509 | SuperClassWriter::addVariable(node_x, typePrec, dim0); |
---|
[879] | 510 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x); |
---|
[924] | 511 | SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x); |
---|
[879] | 512 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x); |
---|
[1045] | 513 | SuperClassWriter::addVariable(node_y, typePrec, dim0); |
---|
[879] | 514 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y); |
---|
[924] | 515 | SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y); |
---|
[879] | 516 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y); |
---|
| 517 | } |
---|
| 518 | } // domain->nvertex == 1 |
---|
[878] | 519 | |
---|
[879] | 520 | // Adding edges and nodes, if nodes have not been defined previously |
---|
| 521 | if (domain->nvertex == 2) |
---|
| 522 | { |
---|
| 523 | if (!SuperClassWriter::varExist(node_x) || !SuperClassWriter::varExist(node_y)) |
---|
| 524 | { |
---|
[924] | 525 | SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo); |
---|
[879] | 526 | dim0.clear(); |
---|
| 527 | dim0.push_back(dimNode); |
---|
[1045] | 528 | SuperClassWriter::addVariable(node_x, typePrec, dim0); |
---|
[879] | 529 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x); |
---|
[924] | 530 | SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x); |
---|
[879] | 531 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x); |
---|
[1045] | 532 | SuperClassWriter::addVariable(node_y, typePrec, dim0); |
---|
[879] | 533 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y); |
---|
[924] | 534 | SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y); |
---|
[879] | 535 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y); |
---|
| 536 | } |
---|
[924] | 537 | SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName); |
---|
| 538 | SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName); |
---|
| 539 | SuperClassWriter::addDimension(dimEdge, domain->ni_glo); |
---|
| 540 | dim0.clear(); |
---|
| 541 | dim0.push_back(dimEdge); |
---|
[1045] | 542 | SuperClassWriter::addVariable(edge_x, typePrec, dim0); |
---|
[924] | 543 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x); |
---|
| 544 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x); |
---|
| 545 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x); |
---|
[1045] | 546 | SuperClassWriter::addVariable(edge_y, typePrec, dim0); |
---|
[924] | 547 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y); |
---|
| 548 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y); |
---|
| 549 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y); |
---|
| 550 | dim0.clear(); |
---|
| 551 | dim0.push_back(dimEdge); |
---|
| 552 | dim0.push_back(dimTwo); |
---|
| 553 | SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0); |
---|
| 554 | SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes); |
---|
| 555 | SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes); |
---|
| 556 | SuperClassWriter::addAttribute("start_index", 0, &edge_nodes); |
---|
[879] | 557 | } // domain->nvertex == 2 |
---|
[878] | 558 | |
---|
[879] | 559 | // Adding faces, edges, and nodes, if edges and nodes have not been defined previously |
---|
| 560 | if (domain->nvertex > 2) |
---|
| 561 | { |
---|
| 562 | // Nodes |
---|
| 563 | if (!SuperClassWriter::varExist(node_x) || !SuperClassWriter::varExist(node_y)) |
---|
| 564 | { |
---|
[924] | 565 | SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo); |
---|
[879] | 566 | dim0.clear(); |
---|
| 567 | dim0.push_back(dimNode); |
---|
[1045] | 568 | SuperClassWriter::addVariable(node_x, typePrec, dim0); |
---|
[879] | 569 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x); |
---|
[924] | 570 | SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x); |
---|
[879] | 571 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x); |
---|
[1045] | 572 | SuperClassWriter::addVariable(node_y, typePrec, dim0); |
---|
[879] | 573 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y); |
---|
[924] | 574 | SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y); |
---|
[879] | 575 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y); |
---|
| 576 | } |
---|
| 577 | if (!SuperClassWriter::varExist(edge_x) || !SuperClassWriter::varExist(edge_y)) |
---|
| 578 | { |
---|
| 579 | SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName); |
---|
| 580 | SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName); |
---|
[924] | 581 | SuperClassWriter::addDimension(dimEdge, domain->mesh->nbEdgesGlo); |
---|
[879] | 582 | dim0.clear(); |
---|
| 583 | dim0.push_back(dimEdge); |
---|
[1045] | 584 | SuperClassWriter::addVariable(edge_x, typePrec, dim0); |
---|
[879] | 585 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x); |
---|
[924] | 586 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x); |
---|
[879] | 587 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x); |
---|
[1045] | 588 | SuperClassWriter::addVariable(edge_y, typePrec, dim0); |
---|
[879] | 589 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y); |
---|
[924] | 590 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y); |
---|
[879] | 591 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y); |
---|
| 592 | dim0.clear(); |
---|
| 593 | dim0.push_back(dimEdge); |
---|
| 594 | dim0.push_back(dimTwo); |
---|
| 595 | SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0); |
---|
| 596 | SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes); |
---|
| 597 | SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes); |
---|
| 598 | SuperClassWriter::addAttribute("start_index", 0, &edge_nodes); |
---|
| 599 | } |
---|
[924] | 600 | SuperClassWriter::addAttribute("face_coordinates", face_x + " " + face_y, &domainName); |
---|
| 601 | SuperClassWriter::addAttribute("face_node_connectivity", face_nodes, &domainName); |
---|
| 602 | SuperClassWriter::addDimension(dimFace, domain->ni_glo); |
---|
| 603 | SuperClassWriter::addDimension(dimVertex, domain->nvertex); |
---|
| 604 | dim0.clear(); |
---|
| 605 | dim0.push_back(dimFace); |
---|
[1045] | 606 | SuperClassWriter::addVariable(face_x, typePrec, dim0); |
---|
[924] | 607 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &face_x); |
---|
| 608 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh faces."), &face_x); |
---|
| 609 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &face_x); |
---|
[1045] | 610 | SuperClassWriter::addVariable(face_y, typePrec, dim0); |
---|
[924] | 611 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &face_y); |
---|
| 612 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh faces."), &face_y); |
---|
| 613 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &face_y); |
---|
| 614 | dim0.clear(); |
---|
| 615 | dim0.push_back(dimFace); |
---|
| 616 | dim0.push_back(dimVertex); |
---|
| 617 | SuperClassWriter::addVariable(face_nodes, NC_INT, dim0); |
---|
| 618 | SuperClassWriter::addAttribute("cf_role", StdString("face_node_connectivity"), &face_nodes); |
---|
| 619 | SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its corner nodes."), &face_nodes); |
---|
| 620 | SuperClassWriter::addAttribute("start_index", 0, &face_nodes); |
---|
| 621 | dim0.clear(); |
---|
| 622 | dim0.push_back(dimFace); |
---|
| 623 | dim0.push_back(dimVertex); |
---|
| 624 | SuperClassWriter::addVariable(face_edges, NC_INT, dim0); |
---|
| 625 | SuperClassWriter::addAttribute("cf_role", StdString("face_edge_connectivity"), &face_edges); |
---|
| 626 | SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its edges."), &face_edges); |
---|
| 627 | SuperClassWriter::addAttribute("start_index", 0, &face_edges); |
---|
[929] | 628 | SuperClassWriter::addAttribute("_FillValue", 999999, &face_edges); |
---|
[924] | 629 | dim0.clear(); |
---|
| 630 | dim0.push_back(dimEdge); |
---|
| 631 | dim0.push_back(dimTwo); |
---|
| 632 | SuperClassWriter::addVariable(edge_faces, NC_INT, dim0); |
---|
| 633 | SuperClassWriter::addAttribute("cf_role", StdString("edge_face connectivity"), &edge_faces); |
---|
| 634 | SuperClassWriter::addAttribute("long_name", StdString("neighbor faces for edges"), &edge_faces); |
---|
| 635 | SuperClassWriter::addAttribute("start_index", 0, &edge_faces); |
---|
| 636 | SuperClassWriter::addAttribute("_FillValue", -999, &edge_faces); |
---|
| 637 | SuperClassWriter::addAttribute("comment", StdString("missing neighbor faces are indicated using _FillValue"), &edge_faces); |
---|
| 638 | dim0.clear(); |
---|
| 639 | dim0.push_back(dimFace); |
---|
| 640 | dim0.push_back(dimVertex); |
---|
| 641 | SuperClassWriter::addVariable(face_faces, NC_INT, dim0); |
---|
| 642 | SuperClassWriter::addAttribute("cf_role", StdString("face_face connectivity"), &face_faces); |
---|
| 643 | SuperClassWriter::addAttribute("long_name", StdString("Indicates which other faces neighbor each face"), &face_faces); |
---|
| 644 | SuperClassWriter::addAttribute("start_index", 0, &face_faces); |
---|
[929] | 645 | SuperClassWriter::addAttribute("_FillValue", 999999, &face_faces); |
---|
[924] | 646 | SuperClassWriter::addAttribute("flag_values", -1, &face_faces); |
---|
| 647 | SuperClassWriter::addAttribute("flag_meanings", StdString("out_of_mesh"), &face_faces); |
---|
[879] | 648 | } // domain->nvertex > 2 |
---|
[878] | 649 | |
---|
[879] | 650 | SuperClassWriter::definition_end(); |
---|
[878] | 651 | |
---|
[924] | 652 | std::vector<StdSize> startEdges(1) ; |
---|
| 653 | std::vector<StdSize> countEdges(1) ; |
---|
| 654 | std::vector<StdSize> startNodes(1) ; |
---|
| 655 | std::vector<StdSize> countNodes(1) ; |
---|
| 656 | std::vector<StdSize> startFaces(1) ; |
---|
| 657 | std::vector<StdSize> countFaces(1) ; |
---|
| 658 | std::vector<StdSize> startEdgeNodes(2) ; |
---|
| 659 | std::vector<StdSize> countEdgeNodes(2) ; |
---|
| 660 | std::vector<StdSize> startEdgeFaces(2) ; |
---|
| 661 | std::vector<StdSize> countEdgeFaces(2) ; |
---|
| 662 | std::vector<StdSize> startFaceConctv(2) ; |
---|
| 663 | std::vector<StdSize> countFaceConctv(2) ; |
---|
[902] | 664 | |
---|
[879] | 665 | if (!isWrittenDomain(domid)) |
---|
| 666 | { |
---|
| 667 | if (domain->nvertex == 1) |
---|
| 668 | { |
---|
[924] | 669 | if (domain->isEmpty()) |
---|
| 670 | { |
---|
| 671 | startNodes[0]=0 ; |
---|
| 672 | countNodes[0]=0 ; |
---|
| 673 | } |
---|
| 674 | else |
---|
| 675 | { |
---|
| 676 | startNodes[0] = domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
| 677 | countNodes[0] = domain->zoom_ni_srv ; |
---|
| 678 | } |
---|
| 679 | |
---|
| 680 | SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes); |
---|
| 681 | SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes); |
---|
[879] | 682 | } |
---|
| 683 | else if (domain->nvertex == 2) |
---|
[924] | 684 | { |
---|
| 685 | if (domain->isEmpty()) |
---|
| 686 | { |
---|
| 687 | startEdges[0]=0 ; |
---|
| 688 | countEdges[0]=0 ; |
---|
| 689 | startNodes[0]=0 ; |
---|
| 690 | countNodes[0]=0 ; |
---|
| 691 | startEdgeNodes[0]=0; |
---|
| 692 | startEdgeNodes[1]=0; |
---|
| 693 | countEdgeNodes[0]=0; |
---|
| 694 | countEdgeNodes[1]=0; |
---|
| 695 | |
---|
| 696 | } |
---|
| 697 | else |
---|
| 698 | { |
---|
| 699 | startEdges[0] = domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
| 700 | countEdges[0] = domain->zoom_ni_srv ; |
---|
| 701 | startNodes[0] = domain->mesh->node_start; |
---|
| 702 | countNodes[0] = domain->mesh->node_count; |
---|
| 703 | startEdgeNodes[0] = domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
| 704 | startEdgeNodes[1] = 0; |
---|
| 705 | countEdgeNodes[0] = domain->zoom_ni_srv; |
---|
| 706 | countEdgeNodes[1]= 2; |
---|
| 707 | } |
---|
| 708 | SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes); |
---|
| 709 | SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes); |
---|
| 710 | SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges); |
---|
| 711 | SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges); |
---|
| 712 | SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes); |
---|
| 713 | } |
---|
[879] | 714 | else |
---|
| 715 | { |
---|
[924] | 716 | if (domain->isEmpty()) |
---|
| 717 | { |
---|
| 718 | startFaces[0] = 0 ; |
---|
| 719 | countFaces[0] = 0 ; |
---|
| 720 | startNodes[0] = 0; |
---|
| 721 | countNodes[0] = 0; |
---|
| 722 | startEdges[0] = 0; |
---|
| 723 | countEdges[0] = 0; |
---|
| 724 | startEdgeFaces[0] = 0; |
---|
| 725 | startEdgeFaces[1] = 0; |
---|
| 726 | countEdgeFaces[0] = 0; |
---|
| 727 | countEdgeFaces[1] = 0; |
---|
| 728 | startFaceConctv[0] = 0; |
---|
| 729 | startFaceConctv[1] = 0; |
---|
| 730 | countFaceConctv[0] = 0; |
---|
| 731 | countFaceConctv[1] = 0; |
---|
| 732 | } |
---|
| 733 | else |
---|
| 734 | { |
---|
| 735 | startFaces[0] = domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
| 736 | countFaces[0] = domain->zoom_ni_srv ; |
---|
| 737 | startNodes[0] = domain->mesh->node_start; |
---|
| 738 | countNodes[0] = domain->mesh->node_count; |
---|
| 739 | startEdges[0] = domain->mesh->edge_start; |
---|
| 740 | countEdges[0] = domain->mesh->edge_count; |
---|
| 741 | startEdgeNodes[0] = domain->mesh->edge_start; |
---|
| 742 | startEdgeNodes[1] = 0; |
---|
| 743 | countEdgeNodes[0] = domain->mesh->edge_count; |
---|
| 744 | countEdgeNodes[1]= 2; |
---|
| 745 | startEdgeFaces[0] = domain->mesh->edge_start; |
---|
| 746 | startEdgeFaces[1]= 0; |
---|
| 747 | countEdgeFaces[0] = domain->mesh->edge_count; |
---|
| 748 | countEdgeFaces[1]= 2; |
---|
| 749 | startFaceConctv[0] = domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
| 750 | startFaceConctv[1] = 0; |
---|
| 751 | countFaceConctv[0] = domain->zoom_ni_srv; |
---|
| 752 | countFaceConctv[1] = domain->nvertex; |
---|
| 753 | } |
---|
| 754 | SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes); |
---|
| 755 | SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes); |
---|
| 756 | SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges); |
---|
| 757 | SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges); |
---|
| 758 | SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes); |
---|
| 759 | SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0, &startFaces, &countFaces); |
---|
| 760 | SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0, &startFaces, &countFaces); |
---|
| 761 | SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
| 762 | SuperClassWriter::writeData(domain->mesh->face_edges, face_edges, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
| 763 | SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces, isCollective, 0, &startEdgeFaces, &countEdgeFaces); |
---|
| 764 | SuperClassWriter::writeData(domain->mesh->face_faces, face_faces, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
[879] | 765 | } |
---|
| 766 | setWrittenDomain(domid); |
---|
| 767 | } // !isWrittenDomain |
---|
| 768 | else |
---|
| 769 | { |
---|
| 770 | if (domain->nvertex == 2) |
---|
| 771 | { |
---|
[924] | 772 | startEdges[0] = domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
| 773 | countEdges[0] = domain->zoom_ni_srv ; |
---|
| 774 | startEdgeNodes[0] = domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
| 775 | startEdgeNodes[1] = 0; |
---|
| 776 | countEdgeNodes[0] = domain->zoom_ni_srv; |
---|
| 777 | countEdgeNodes[1]= 2; |
---|
| 778 | SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges); |
---|
| 779 | SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges); |
---|
| 780 | SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes); |
---|
[879] | 781 | } |
---|
| 782 | if (domain->nvertex > 2) |
---|
| 783 | { |
---|
[924] | 784 | |
---|
[879] | 785 | if (!domain->mesh->edgesAreWritten) |
---|
| 786 | { |
---|
[924] | 787 | startEdges[0] = domain->mesh->edge_start; |
---|
| 788 | countEdges[0] = domain->mesh->edge_count; |
---|
| 789 | startEdgeNodes[0] = domain->mesh->edge_start; |
---|
| 790 | startEdgeNodes[1] = 0; |
---|
| 791 | countEdgeNodes[0] = domain->mesh->edge_count; |
---|
| 792 | countEdgeNodes[1]= 2; |
---|
| 793 | SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges); |
---|
| 794 | SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges); |
---|
| 795 | SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes); |
---|
[879] | 796 | } |
---|
[924] | 797 | startFaces[0] = domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
| 798 | countFaces[0] = domain->zoom_ni_srv; |
---|
| 799 | startEdgeFaces[0] = domain->mesh->edge_start; |
---|
| 800 | startEdgeFaces[1]= 0; |
---|
| 801 | countEdgeFaces[0] = domain->mesh->edge_count; |
---|
| 802 | countEdgeFaces[1]= 2; |
---|
| 803 | startFaceConctv[0] = domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
| 804 | startFaceConctv[1] = 0; |
---|
| 805 | countFaceConctv[0] = domain->zoom_ni_srv; |
---|
| 806 | countFaceConctv[1]= domain->nvertex; |
---|
| 807 | SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0, &startFaces, &countFaces); |
---|
| 808 | SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0, &startFaces, &countFaces); |
---|
| 809 | SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
| 810 | SuperClassWriter::writeData(domain->mesh->face_edges, face_edges, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
| 811 | SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces, isCollective, 0, &startEdgeFaces, &countEdgeFaces); |
---|
| 812 | SuperClassWriter::writeData(domain->mesh->face_faces, face_faces, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
[879] | 813 | } |
---|
| 814 | }// isWrittenDomain |
---|
[878] | 815 | |
---|
[879] | 816 | SuperClassWriter::definition_start(); |
---|
[878] | 817 | |
---|
[879] | 818 | break; |
---|
| 819 | } // ONE_FILE |
---|
[878] | 820 | |
---|
[879] | 821 | case (MULTI_FILE) : |
---|
| 822 | { |
---|
| 823 | break; |
---|
| 824 | } |
---|
[878] | 825 | |
---|
[879] | 826 | default : |
---|
| 827 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
| 828 | << "[ type = " << SuperClass::type << "]" |
---|
| 829 | << " not implemented yet !"); |
---|
| 830 | } // switch |
---|
| 831 | } // try |
---|
[878] | 832 | |
---|
[879] | 833 | catch (CNetCdfException& e) |
---|
| 834 | { |
---|
| 835 | StdString msg("On writing the domain : "); |
---|
| 836 | msg.append(domid); msg.append("\n"); |
---|
| 837 | msg.append("In the context : "); |
---|
| 838 | msg.append(context->getId()); msg.append("\n"); |
---|
| 839 | msg.append(e.what()); |
---|
[924] | 840 | ERROR("CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain)", << msg); |
---|
[879] | 841 | } |
---|
[878] | 842 | |
---|
[879] | 843 | domain->addRelFile(this->filename); |
---|
| 844 | } |
---|
[878] | 845 | |
---|
[879] | 846 | //-------------------------------------------------------------- |
---|
[878] | 847 | |
---|
[879] | 848 | void CNc4DataOutput::writeUnstructuredDomain(CDomain* domain) |
---|
[449] | 849 | { |
---|
| 850 | CContext* context = CContext::getCurrent() ; |
---|
| 851 | CContextServer* server=context->server ; |
---|
[488] | 852 | |
---|
[449] | 853 | if (domain->IsWritten(this->filename)) return; |
---|
| 854 | domain->checkAttributes(); |
---|
[488] | 855 | |
---|
| 856 | if (domain->isEmpty()) |
---|
[449] | 857 | if (SuperClass::type==MULTI_FILE) return ; |
---|
| 858 | |
---|
| 859 | std::vector<StdString> dim0, dim1; |
---|
[772] | 860 | StdString domid = domain->getDomainOutputName(); |
---|
[705] | 861 | if (isWrittenDomain(domid)) return ; |
---|
[774] | 862 | else setWrittenDomain(domid); |
---|
[705] | 863 | |
---|
[449] | 864 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
---|
| 865 | |
---|
| 866 | StdString dimXid = StdString("cell").append(appendDomid); |
---|
| 867 | StdString dimVertId = StdString("nvertex").append(appendDomid); |
---|
[488] | 868 | |
---|
[449] | 869 | string lonid,latid,bounds_lonid,bounds_latid ; |
---|
[611] | 870 | string areaId = "area" + appendDomid; |
---|
[449] | 871 | |
---|
[1045] | 872 | nc_type typePrec ; |
---|
| 873 | if (domain->prec.isEmpty()) typePrec = NC_FLOAT ; |
---|
| 874 | else if (domain->prec==4) typePrec = NC_FLOAT ; |
---|
| 875 | else if (domain->prec==8) typePrec = NC_DOUBLE ; |
---|
| 876 | |
---|
[498] | 877 | try |
---|
[449] | 878 | { |
---|
[498] | 879 | switch (SuperClass::type) |
---|
| 880 | { |
---|
| 881 | case (MULTI_FILE) : |
---|
| 882 | { |
---|
| 883 | dim0.push_back(dimXid); |
---|
[657] | 884 | SuperClassWriter::addDimension(dimXid, domain->zoom_ni_srv); |
---|
[488] | 885 | |
---|
[665] | 886 | lonid = StdString("lon").append(appendDomid); |
---|
| 887 | latid = StdString("lat").append(appendDomid); |
---|
[498] | 888 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
---|
| 889 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
---|
[665] | 890 | if (domain->hasLonLat) |
---|
| 891 | { |
---|
[1045] | 892 | SuperClassWriter::addVariable(latid, typePrec, dim0); |
---|
| 893 | SuperClassWriter::addVariable(lonid, typePrec, dim0); |
---|
[665] | 894 | this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid); |
---|
| 895 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid); |
---|
| 896 | this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid); |
---|
| 897 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid); |
---|
| 898 | if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
---|
| 899 | } |
---|
[498] | 900 | dim0.clear(); |
---|
| 901 | if (domain->hasBounds) |
---|
| 902 | { |
---|
| 903 | dim0.push_back(dimXid); |
---|
| 904 | dim0.push_back(dimVertId); |
---|
[1045] | 905 | SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0); |
---|
| 906 | SuperClassWriter::addVariable(bounds_latid, typePrec, dim0); |
---|
[498] | 907 | } |
---|
| 908 | |
---|
| 909 | dim0.clear(); |
---|
[449] | 910 | dim0.push_back(dimXid); |
---|
[611] | 911 | if (domain->hasArea) |
---|
| 912 | { |
---|
[1045] | 913 | SuperClassWriter::addVariable(areaId, typePrec, dim0); |
---|
[614] | 914 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
---|
[611] | 915 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
---|
| 916 | } |
---|
| 917 | |
---|
[498] | 918 | SuperClassWriter::definition_end(); |
---|
[449] | 919 | |
---|
[665] | 920 | if (domain->hasLonLat) |
---|
[498] | 921 | { |
---|
[665] | 922 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0); |
---|
| 923 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0); |
---|
| 924 | if (domain->hasBounds) |
---|
| 925 | { |
---|
| 926 | SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0); |
---|
| 927 | SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0); |
---|
| 928 | } |
---|
[498] | 929 | } |
---|
[611] | 930 | |
---|
| 931 | if (domain->hasArea) |
---|
| 932 | SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0); |
---|
| 933 | |
---|
[498] | 934 | SuperClassWriter::definition_start(); |
---|
| 935 | break ; |
---|
| 936 | } |
---|
[488] | 937 | |
---|
[498] | 938 | case (ONE_FILE) : |
---|
| 939 | { |
---|
| 940 | lonid = StdString("lon").append(appendDomid); |
---|
| 941 | latid = StdString("lat").append(appendDomid); |
---|
| 942 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
---|
| 943 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
---|
| 944 | dim0.push_back(dimXid); |
---|
[705] | 945 | SuperClassWriter::addDimension(dimXid, domain->ni_glo); |
---|
[665] | 946 | if (domain->hasLonLat) |
---|
| 947 | { |
---|
[1045] | 948 | SuperClassWriter::addVariable(latid, typePrec, dim0); |
---|
| 949 | SuperClassWriter::addVariable(lonid, typePrec, dim0); |
---|
[665] | 950 | |
---|
| 951 | this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid); |
---|
| 952 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid); |
---|
| 953 | this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid); |
---|
| 954 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid); |
---|
| 955 | if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
---|
| 956 | } |
---|
[498] | 957 | dim0.clear(); |
---|
[449] | 958 | |
---|
[498] | 959 | if (domain->hasBounds) |
---|
| 960 | { |
---|
| 961 | dim0.push_back(dimXid); |
---|
| 962 | dim0.push_back(dimVertId); |
---|
[1045] | 963 | SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0); |
---|
| 964 | SuperClassWriter::addVariable(bounds_latid, typePrec, dim0); |
---|
[498] | 965 | } |
---|
[488] | 966 | |
---|
[611] | 967 | if (domain->hasArea) |
---|
| 968 | { |
---|
| 969 | dim0.clear(); |
---|
| 970 | dim0.push_back(dimXid); |
---|
[1045] | 971 | SuperClassWriter::addVariable(areaId, typePrec, dim0); |
---|
[614] | 972 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
---|
[611] | 973 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
---|
| 974 | } |
---|
| 975 | |
---|
[498] | 976 | SuperClassWriter::definition_end(); |
---|
[488] | 977 | |
---|
[498] | 978 | std::vector<StdSize> start(1), startBounds(2) ; |
---|
| 979 | std::vector<StdSize> count(1), countBounds(2) ; |
---|
| 980 | if (domain->isEmpty()) |
---|
| 981 | { |
---|
| 982 | start[0]=0 ; |
---|
| 983 | count[0]=0 ; |
---|
| 984 | startBounds[1]=0 ; |
---|
| 985 | countBounds[1]=domain->nvertex ; |
---|
| 986 | startBounds[0]=0 ; |
---|
| 987 | countBounds[0]=0 ; |
---|
| 988 | } |
---|
| 989 | else |
---|
| 990 | { |
---|
[705] | 991 | start[0]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
| 992 | count[0]=domain->zoom_ni_srv ; |
---|
| 993 | startBounds[0]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
[498] | 994 | startBounds[1]=0 ; |
---|
[705] | 995 | countBounds[0]=domain->zoom_ni_srv ; |
---|
[498] | 996 | countBounds[1]=domain->nvertex ; |
---|
| 997 | } |
---|
[665] | 998 | |
---|
| 999 | if (domain->hasLonLat) |
---|
[498] | 1000 | { |
---|
[665] | 1001 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count); |
---|
| 1002 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count); |
---|
| 1003 | if (domain->hasBounds) |
---|
| 1004 | { |
---|
| 1005 | SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0,&startBounds,&countBounds); |
---|
| 1006 | SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0,&startBounds,&countBounds); |
---|
| 1007 | } |
---|
[498] | 1008 | } |
---|
[488] | 1009 | |
---|
[611] | 1010 | if (domain->hasArea) |
---|
| 1011 | SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0, &start, &count); |
---|
[488] | 1012 | |
---|
[498] | 1013 | SuperClassWriter::definition_start(); |
---|
[488] | 1014 | |
---|
[498] | 1015 | break; |
---|
| 1016 | } |
---|
| 1017 | default : |
---|
| 1018 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
| 1019 | << "[ type = " << SuperClass::type << "]" |
---|
| 1020 | << " not implemented yet !"); |
---|
| 1021 | } |
---|
[219] | 1022 | } |
---|
[498] | 1023 | catch (CNetCdfException& e) |
---|
| 1024 | { |
---|
| 1025 | StdString msg("On writing the domain : "); |
---|
| 1026 | msg.append(domid); msg.append("\n"); |
---|
| 1027 | msg.append("In the context : "); |
---|
| 1028 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1029 | msg.append(e.what()); |
---|
| 1030 | ERROR("CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)", << msg); |
---|
| 1031 | } |
---|
[219] | 1032 | domain->addRelFile(this->filename); |
---|
| 1033 | } |
---|
| 1034 | //-------------------------------------------------------------- |
---|
| 1035 | |
---|
[347] | 1036 | void CNc4DataOutput::writeAxis_(CAxis* axis) |
---|
[219] | 1037 | { |
---|
[609] | 1038 | if (axis->IsWritten(this->filename)) return; |
---|
| 1039 | axis->checkAttributes(); |
---|
| 1040 | int zoom_size_srv = axis->zoom_size_srv; |
---|
| 1041 | int zoom_begin_srv = axis->zoom_begin_srv; |
---|
[633] | 1042 | int zoom_size = (MULTI_FILE == SuperClass::type) ? zoom_size_srv |
---|
[821] | 1043 | : axis->global_zoom_n; |
---|
[633] | 1044 | int zoom_begin = (MULTI_FILE == SuperClass::type) ? zoom_begin_srv |
---|
[623] | 1045 | : axis->global_zoom_begin; |
---|
[488] | 1046 | |
---|
[633] | 1047 | if ((0 == zoom_size_srv) && (MULTI_FILE == SuperClass::type)) return; |
---|
[498] | 1048 | |
---|
[609] | 1049 | std::vector<StdString> dims; |
---|
[772] | 1050 | StdString axisid = axis->getAxisOutputName(); |
---|
[705] | 1051 | if (isWrittenAxis(axisid)) return ; |
---|
[774] | 1052 | else setWrittenAxis(axisid); |
---|
[705] | 1053 | |
---|
[1045] | 1054 | nc_type typePrec ; |
---|
| 1055 | if (axis->prec.isEmpty()) typePrec = NC_FLOAT ; |
---|
| 1056 | else if (axis->prec==4) typePrec = NC_FLOAT ; |
---|
| 1057 | else if (axis->prec==8) typePrec = NC_DOUBLE ; |
---|
| 1058 | |
---|
[609] | 1059 | try |
---|
| 1060 | { |
---|
| 1061 | SuperClassWriter::addDimension(axisid, zoom_size); |
---|
[816] | 1062 | if (axis->hasValue) |
---|
| 1063 | { |
---|
| 1064 | dims.push_back(axisid); |
---|
[1045] | 1065 | SuperClassWriter::addVariable(axisid, typePrec, dims); |
---|
[219] | 1066 | |
---|
[816] | 1067 | if (!axis->name.isEmpty()) |
---|
| 1068 | SuperClassWriter::addAttribute("name", axis->name.getValue(), &axisid); |
---|
[219] | 1069 | |
---|
[816] | 1070 | if (!axis->standard_name.isEmpty()) |
---|
| 1071 | SuperClassWriter::addAttribute("standard_name", axis->standard_name.getValue(), &axisid); |
---|
[540] | 1072 | |
---|
[816] | 1073 | if (!axis->long_name.isEmpty()) |
---|
| 1074 | SuperClassWriter::addAttribute("long_name", axis->long_name.getValue(), &axisid); |
---|
[219] | 1075 | |
---|
[816] | 1076 | if (!axis->unit.isEmpty()) |
---|
| 1077 | SuperClassWriter::addAttribute("units", axis->unit.getValue(), &axisid); |
---|
[219] | 1078 | |
---|
[816] | 1079 | if (!axis->positive.isEmpty()) |
---|
| 1080 | { |
---|
| 1081 | SuperClassWriter::addAttribute("axis", string("Z"), &axisid); |
---|
| 1082 | SuperClassWriter::addAttribute("positive", |
---|
| 1083 | (axis->positive == CAxis::positive_attr::up) ? string("up") : string("down"), |
---|
| 1084 | &axisid); |
---|
| 1085 | } |
---|
[399] | 1086 | |
---|
[816] | 1087 | StdString axisBoundsId = axisid + "_bounds"; |
---|
| 1088 | if (!axis->bounds.isEmpty()) |
---|
| 1089 | { |
---|
| 1090 | dims.push_back("axis_nbounds"); |
---|
[1045] | 1091 | SuperClassWriter::addVariable(axisBoundsId, typePrec, dims); |
---|
[816] | 1092 | SuperClassWriter::addAttribute("bounds", axisBoundsId, &axisid); |
---|
| 1093 | } |
---|
[488] | 1094 | |
---|
[816] | 1095 | SuperClassWriter::definition_end(); |
---|
| 1096 | |
---|
| 1097 | switch (SuperClass::type) |
---|
[633] | 1098 | { |
---|
[816] | 1099 | case MULTI_FILE: |
---|
| 1100 | { |
---|
| 1101 | CArray<double,1> axis_value(zoom_size_srv); |
---|
| 1102 | for (int i = 0; i < zoom_size_srv; i++) axis_value(i) = axis->value_srv(i); |
---|
| 1103 | SuperClassWriter::writeData(axis_value, axisid, isCollective, 0); |
---|
[633] | 1104 | |
---|
[816] | 1105 | if (!axis->bounds.isEmpty()) |
---|
| 1106 | SuperClassWriter::writeData(axis->bound_srv, axisBoundsId, isCollective, 0); |
---|
[488] | 1107 | |
---|
[816] | 1108 | SuperClassWriter::definition_start(); |
---|
[219] | 1109 | |
---|
[816] | 1110 | break; |
---|
| 1111 | } |
---|
| 1112 | case ONE_FILE: |
---|
| 1113 | { |
---|
| 1114 | CArray<double,1> axis_value(zoom_size_srv); |
---|
| 1115 | axis_value = axis->value_srv; |
---|
[498] | 1116 | |
---|
[816] | 1117 | std::vector<StdSize> start(1), startBounds(2) ; |
---|
| 1118 | std::vector<StdSize> count(1), countBounds(2) ; |
---|
| 1119 | start[0] = startBounds[0] = zoom_begin_srv-axis->global_zoom_begin; |
---|
| 1120 | count[0] = countBounds[0] = zoom_size_srv; |
---|
| 1121 | startBounds[1] = 0; |
---|
| 1122 | countBounds[1] = 2; |
---|
| 1123 | SuperClassWriter::writeData(axis_value, axisid, isCollective, 0, &start, &count); |
---|
[633] | 1124 | |
---|
[816] | 1125 | if (!axis->bounds.isEmpty()) |
---|
| 1126 | SuperClassWriter::writeData(axis->bound_srv, axisBoundsId, isCollective, 0, &startBounds, &countBounds); |
---|
[609] | 1127 | |
---|
[816] | 1128 | SuperClassWriter::definition_start(); |
---|
[609] | 1129 | |
---|
[816] | 1130 | break; |
---|
| 1131 | } |
---|
| 1132 | default : |
---|
| 1133 | ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)", |
---|
| 1134 | << "[ type = " << SuperClass::type << "]" |
---|
| 1135 | << " not implemented yet !"); |
---|
[609] | 1136 | } |
---|
| 1137 | } |
---|
| 1138 | } |
---|
| 1139 | catch (CNetCdfException& e) |
---|
| 1140 | { |
---|
| 1141 | StdString msg("On writing the axis : "); |
---|
| 1142 | msg.append(axisid); msg.append("\n"); |
---|
| 1143 | msg.append("In the context : "); |
---|
| 1144 | CContext* context = CContext::getCurrent() ; |
---|
| 1145 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1146 | msg.append(e.what()); |
---|
| 1147 | ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)", << msg); |
---|
| 1148 | } |
---|
| 1149 | axis->addRelFile(this->filename); |
---|
[391] | 1150 | } |
---|
[488] | 1151 | |
---|
[887] | 1152 | void CNc4DataOutput::writeScalar_(CScalar* scalar) |
---|
| 1153 | { |
---|
| 1154 | if (scalar->IsWritten(this->filename)) return; |
---|
| 1155 | scalar->checkAttributes(); |
---|
| 1156 | int scalarSize = 1; |
---|
| 1157 | |
---|
| 1158 | StdString scalaId = scalar->getScalarOutputName(); |
---|
| 1159 | if (isWrittenAxis(scalaId)) return ; |
---|
| 1160 | else setWrittenAxis(scalaId); |
---|
| 1161 | |
---|
[1045] | 1162 | nc_type typePrec ; |
---|
| 1163 | if (scalar->prec.isEmpty()) typePrec = NC_FLOAT ; |
---|
| 1164 | else if (scalar->prec==4) typePrec = NC_FLOAT ; |
---|
| 1165 | else if (scalar->prec==8) typePrec = NC_DOUBLE ; |
---|
| 1166 | |
---|
| 1167 | |
---|
[887] | 1168 | try |
---|
| 1169 | { |
---|
| 1170 | if (!scalar->value.isEmpty()) |
---|
| 1171 | { |
---|
| 1172 | // dims.push_back(scalaId); |
---|
| 1173 | std::vector<StdString> dims; |
---|
[1045] | 1174 | SuperClassWriter::addVariable(scalaId, typePrec, dims); |
---|
[887] | 1175 | |
---|
| 1176 | if (!scalar->name.isEmpty()) |
---|
| 1177 | SuperClassWriter::addAttribute("name", scalar->name.getValue(), &scalaId); |
---|
| 1178 | |
---|
| 1179 | if (!scalar->standard_name.isEmpty()) |
---|
| 1180 | SuperClassWriter::addAttribute("standard_name", scalar->standard_name.getValue(), &scalaId); |
---|
| 1181 | |
---|
| 1182 | if (!scalar->long_name.isEmpty()) |
---|
| 1183 | SuperClassWriter::addAttribute("long_name", scalar->long_name.getValue(), &scalaId); |
---|
| 1184 | |
---|
| 1185 | if (!scalar->unit.isEmpty()) |
---|
| 1186 | SuperClassWriter::addAttribute("units", scalar->unit.getValue(), &scalaId); |
---|
| 1187 | |
---|
| 1188 | SuperClassWriter::definition_end(); |
---|
| 1189 | |
---|
| 1190 | switch (SuperClass::type) |
---|
| 1191 | { |
---|
| 1192 | case MULTI_FILE: |
---|
| 1193 | { |
---|
| 1194 | CArray<double,1> scalarValue(scalarSize); |
---|
| 1195 | scalarValue(0) = scalar->value; |
---|
| 1196 | SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0); |
---|
| 1197 | SuperClassWriter::definition_start(); |
---|
| 1198 | |
---|
| 1199 | break; |
---|
| 1200 | } |
---|
| 1201 | case ONE_FILE: |
---|
| 1202 | { |
---|
| 1203 | CArray<double,1> scalarValue(scalarSize); |
---|
| 1204 | scalarValue(0) = scalar->value; |
---|
| 1205 | |
---|
| 1206 | std::vector<StdSize> start(1); |
---|
| 1207 | std::vector<StdSize> count(1); |
---|
| 1208 | start[0] = 0; |
---|
| 1209 | count[0] = 1; |
---|
| 1210 | SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0, &start, &count); |
---|
| 1211 | SuperClassWriter::definition_start(); |
---|
| 1212 | |
---|
| 1213 | break; |
---|
| 1214 | } |
---|
| 1215 | default : |
---|
| 1216 | ERROR("CNc4DataOutput::writeAxis_(CAxis* scalar)", |
---|
| 1217 | << "[ type = " << SuperClass::type << "]" |
---|
| 1218 | << " not implemented yet !"); |
---|
| 1219 | } |
---|
| 1220 | } |
---|
| 1221 | } |
---|
| 1222 | catch (CNetCdfException& e) |
---|
| 1223 | { |
---|
| 1224 | StdString msg("On writing the scalar : "); |
---|
| 1225 | msg.append(scalaId); msg.append("\n"); |
---|
| 1226 | msg.append("In the context : "); |
---|
| 1227 | CContext* context = CContext::getCurrent() ; |
---|
| 1228 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1229 | msg.append(e.what()); |
---|
| 1230 | ERROR("CNc4DataOutput::writeScalar_(CScalar* scalar)", << msg); |
---|
| 1231 | } |
---|
| 1232 | scalar->addRelFile(this->filename); |
---|
| 1233 | } |
---|
| 1234 | |
---|
[676] | 1235 | //-------------------------------------------------------------- |
---|
| 1236 | |
---|
| 1237 | void CNc4DataOutput::writeGridCompressed_(CGrid* grid) |
---|
| 1238 | { |
---|
| 1239 | if (grid->isScalarGrid() || grid->isWrittenCompressed(this->filename)) return; |
---|
| 1240 | |
---|
| 1241 | try |
---|
| 1242 | { |
---|
[887] | 1243 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
[676] | 1244 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 1245 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
[887] | 1246 | std::vector<StdString> scalarList = grid->getScalarList(); |
---|
| 1247 | int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0; |
---|
[676] | 1248 | |
---|
| 1249 | std::vector<StdString> dims; |
---|
| 1250 | |
---|
| 1251 | if (grid->isCompressible()) |
---|
| 1252 | { |
---|
| 1253 | StdString varId = grid->getId() + "_points"; |
---|
| 1254 | |
---|
| 1255 | int nbIndexes = (SuperClass::type == MULTI_FILE) ? grid->getNumberWrittenIndexes() : grid->getTotalNumberWrittenIndexes(); |
---|
| 1256 | SuperClassWriter::addDimension(varId, nbIndexes); |
---|
| 1257 | |
---|
| 1258 | dims.push_back(varId); |
---|
| 1259 | SuperClassWriter::addVariable(varId, NC_INT, dims); |
---|
| 1260 | |
---|
| 1261 | StdOStringStream compress; |
---|
| 1262 | for (int i = numElement - 1; i >= 0; --i) |
---|
| 1263 | { |
---|
[887] | 1264 | if (2 == axisDomainOrder(i)) |
---|
[676] | 1265 | { |
---|
| 1266 | CDomain* domain = CDomain::get(domainList[domainList.size() - idxDomain - 1]); |
---|
[772] | 1267 | StdString domId = domain->getDomainOutputName(); |
---|
[676] | 1268 | StdString appendDomId = singleDomain ? "" : "_" + domId; |
---|
| 1269 | |
---|
| 1270 | switch (domain->type) |
---|
| 1271 | { |
---|
| 1272 | case CDomain::type_attr::curvilinear: |
---|
| 1273 | compress << "y" << appendDomId << " x" << appendDomId; |
---|
| 1274 | break; |
---|
| 1275 | case CDomain::type_attr::rectilinear: |
---|
| 1276 | compress << "lat" << appendDomId << " lon" << appendDomId; |
---|
| 1277 | break; |
---|
| 1278 | case CDomain::type_attr::unstructured: |
---|
| 1279 | compress << "cell" << appendDomId; |
---|
| 1280 | break; |
---|
| 1281 | } |
---|
| 1282 | ++idxDomain; |
---|
| 1283 | } |
---|
[887] | 1284 | else if (1 == axisDomainOrder(i)) |
---|
[676] | 1285 | { |
---|
| 1286 | CAxis* axis = CAxis::get(axisList[axisList.size() - idxAxis - 1]); |
---|
[772] | 1287 | compress << axis->getAxisOutputName(); |
---|
[676] | 1288 | ++idxAxis; |
---|
| 1289 | } |
---|
[887] | 1290 | else |
---|
| 1291 | { |
---|
| 1292 | CScalar* scalar = CScalar::get(scalarList[scalarList.size() - idxScalar - 1]); |
---|
| 1293 | compress << scalar->getScalarOutputName(); |
---|
| 1294 | ++idxScalar; |
---|
| 1295 | } |
---|
[676] | 1296 | |
---|
| 1297 | if (i != 0) compress << ' '; |
---|
| 1298 | } |
---|
| 1299 | SuperClassWriter::addAttribute("compress", compress.str(), &varId); |
---|
| 1300 | |
---|
| 1301 | grid->computeCompressedIndex(); |
---|
| 1302 | |
---|
| 1303 | CArray<int, 1> indexes(grid->getNumberWrittenIndexes()); |
---|
| 1304 | std::map<int, CArray<size_t, 1> >::const_iterator it; |
---|
| 1305 | for (it = grid->outIndexFromClient.begin(); it != grid->outIndexFromClient.end(); ++it) |
---|
| 1306 | { |
---|
| 1307 | const CArray<size_t, 1> compressedIndexes = grid->compressedOutIndexFromClient[it->first]; |
---|
| 1308 | for (int i = 0; i < it->second.numElements(); i++) |
---|
| 1309 | indexes(compressedIndexes(i)) = it->second(i); |
---|
| 1310 | } |
---|
| 1311 | |
---|
| 1312 | switch (SuperClass::type) |
---|
| 1313 | { |
---|
| 1314 | case (MULTI_FILE): |
---|
| 1315 | { |
---|
| 1316 | SuperClassWriter::writeData(indexes, varId, isCollective, 0); |
---|
| 1317 | break; |
---|
| 1318 | } |
---|
| 1319 | case (ONE_FILE): |
---|
| 1320 | { |
---|
| 1321 | if (grid->doGridHaveDataDistributed()) |
---|
| 1322 | grid->getDistributionServer()->computeGlobalIndex(indexes); |
---|
| 1323 | |
---|
| 1324 | std::vector<StdSize> start, count; |
---|
| 1325 | start.push_back(grid->getOffsetWrittenIndexes()); |
---|
| 1326 | count.push_back(grid->getNumberWrittenIndexes()); |
---|
| 1327 | |
---|
| 1328 | SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count); |
---|
| 1329 | break; |
---|
| 1330 | } |
---|
| 1331 | } |
---|
| 1332 | } |
---|
| 1333 | else |
---|
| 1334 | { |
---|
| 1335 | for (int i = 0; i < numElement; ++i) |
---|
| 1336 | { |
---|
| 1337 | StdString varId, compress; |
---|
| 1338 | CArray<int, 1> indexes; |
---|
| 1339 | bool isDistributed; |
---|
| 1340 | StdSize nbIndexes, totalNbIndexes, offset; |
---|
| 1341 | int firstGlobalIndex; |
---|
| 1342 | |
---|
[887] | 1343 | if (2 == axisDomainOrder(i)) |
---|
[676] | 1344 | { |
---|
| 1345 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
[774] | 1346 | StdString domId = domain->getDomainOutputName(); |
---|
| 1347 | |
---|
[676] | 1348 | if (!domain->isCompressible() |
---|
| 1349 | || domain->type == CDomain::type_attr::unstructured |
---|
[774] | 1350 | || domain->isWrittenCompressed(this->filename) |
---|
| 1351 | || isWrittenCompressedDomain(domId)) |
---|
[676] | 1352 | continue; |
---|
| 1353 | |
---|
| 1354 | StdString appendDomId = singleDomain ? "" : "_" + domId; |
---|
| 1355 | |
---|
| 1356 | varId = domId + "_points"; |
---|
| 1357 | switch (domain->type) |
---|
| 1358 | { |
---|
| 1359 | case CDomain::type_attr::curvilinear: |
---|
| 1360 | compress = "y" + appendDomId + " x" + appendDomId; |
---|
| 1361 | break; |
---|
| 1362 | case CDomain::type_attr::rectilinear: |
---|
| 1363 | compress = "lat" + appendDomId + " lon" + appendDomId; |
---|
| 1364 | break; |
---|
| 1365 | } |
---|
| 1366 | |
---|
| 1367 | const std::vector<int>& indexesToWrite = domain->getIndexesToWrite(); |
---|
| 1368 | indexes.resize(indexesToWrite.size()); |
---|
| 1369 | for (int n = 0; n < indexes.numElements(); ++n) |
---|
| 1370 | indexes(n) = indexesToWrite[n]; |
---|
| 1371 | |
---|
| 1372 | isDistributed = domain->isDistributed(); |
---|
| 1373 | nbIndexes = domain->getNumberWrittenIndexes(); |
---|
| 1374 | totalNbIndexes = domain->getTotalNumberWrittenIndexes(); |
---|
| 1375 | offset = domain->getOffsetWrittenIndexes(); |
---|
| 1376 | firstGlobalIndex = domain->ibegin + domain->jbegin * domain->ni_glo; |
---|
| 1377 | |
---|
| 1378 | domain->addRelFileCompressed(this->filename); |
---|
[774] | 1379 | setWrittenCompressedDomain(domId); |
---|
[676] | 1380 | ++idxDomain; |
---|
| 1381 | } |
---|
[887] | 1382 | else if (1 == axisDomainOrder(i)) |
---|
[676] | 1383 | { |
---|
| 1384 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
[774] | 1385 | StdString axisId = axis->getAxisOutputName(); |
---|
| 1386 | |
---|
| 1387 | if (!axis->isCompressible() |
---|
| 1388 | || axis->isWrittenCompressed(this->filename) |
---|
| 1389 | || isWrittenCompressedAxis(axisId)) |
---|
[676] | 1390 | continue; |
---|
| 1391 | |
---|
| 1392 | varId = axisId + "_points"; |
---|
| 1393 | compress = axisId; |
---|
| 1394 | |
---|
| 1395 | const std::vector<int>& indexesToWrite = axis->getIndexesToWrite(); |
---|
| 1396 | indexes.resize(indexesToWrite.size()); |
---|
| 1397 | for (int n = 0; n < indexes.numElements(); ++n) |
---|
| 1398 | indexes(n) = indexesToWrite[n]; |
---|
| 1399 | |
---|
| 1400 | isDistributed = axis->isDistributed(); |
---|
| 1401 | nbIndexes = axis->getNumberWrittenIndexes(); |
---|
| 1402 | totalNbIndexes = axis->getTotalNumberWrittenIndexes(); |
---|
| 1403 | offset = axis->getOffsetWrittenIndexes(); |
---|
| 1404 | firstGlobalIndex = axis->begin; |
---|
| 1405 | |
---|
| 1406 | axis->addRelFileCompressed(this->filename); |
---|
[774] | 1407 | setWrittenCompressedAxis(axisId); |
---|
[676] | 1408 | ++idxAxis; |
---|
| 1409 | } |
---|
[887] | 1410 | else |
---|
| 1411 | { |
---|
| 1412 | } |
---|
[676] | 1413 | |
---|
| 1414 | if (!varId.empty()) |
---|
| 1415 | { |
---|
| 1416 | SuperClassWriter::addDimension(varId, (SuperClass::type == MULTI_FILE) ? nbIndexes : totalNbIndexes); |
---|
| 1417 | |
---|
| 1418 | dims.clear(); |
---|
| 1419 | dims.push_back(varId); |
---|
| 1420 | SuperClassWriter::addVariable(varId, NC_INT, dims); |
---|
| 1421 | |
---|
| 1422 | SuperClassWriter::addAttribute("compress", compress, &varId); |
---|
| 1423 | |
---|
| 1424 | switch (SuperClass::type) |
---|
| 1425 | { |
---|
| 1426 | case (MULTI_FILE): |
---|
| 1427 | { |
---|
| 1428 | indexes -= firstGlobalIndex; |
---|
| 1429 | SuperClassWriter::writeData(indexes, varId, isCollective, 0); |
---|
| 1430 | break; |
---|
| 1431 | } |
---|
| 1432 | case (ONE_FILE): |
---|
| 1433 | { |
---|
| 1434 | std::vector<StdSize> start, count; |
---|
| 1435 | start.push_back(offset); |
---|
| 1436 | count.push_back(nbIndexes); |
---|
| 1437 | |
---|
| 1438 | SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count); |
---|
| 1439 | break; |
---|
| 1440 | } |
---|
| 1441 | } |
---|
| 1442 | } |
---|
| 1443 | } |
---|
| 1444 | |
---|
| 1445 | if (!dims.empty()) |
---|
| 1446 | grid->computeCompressedIndex(); |
---|
| 1447 | } |
---|
| 1448 | |
---|
| 1449 | grid->addRelFileCompressed(this->filename); |
---|
| 1450 | } |
---|
| 1451 | catch (CNetCdfException& e) |
---|
| 1452 | { |
---|
| 1453 | StdString msg("On writing compressed grid : "); |
---|
| 1454 | msg.append(grid->getId()); msg.append("\n"); |
---|
| 1455 | msg.append("In the context : "); |
---|
| 1456 | CContext* context = CContext::getCurrent(); |
---|
| 1457 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1458 | msg.append(e.what()); |
---|
| 1459 | ERROR("CNc4DataOutput::writeGridCompressed_(CGrid* grid)", << msg); |
---|
| 1460 | } |
---|
| 1461 | } |
---|
| 1462 | |
---|
| 1463 | //-------------------------------------------------------------- |
---|
| 1464 | |
---|
[391] | 1465 | void CNc4DataOutput::writeTimeDimension_(void) |
---|
| 1466 | { |
---|
[498] | 1467 | try |
---|
| 1468 | { |
---|
[802] | 1469 | SuperClassWriter::addDimension(getTimeCounterName()); |
---|
[498] | 1470 | } |
---|
| 1471 | catch (CNetCdfException& e) |
---|
| 1472 | { |
---|
[614] | 1473 | StdString msg("On writing time dimension : time_couter\n"); |
---|
[498] | 1474 | msg.append("In the context : "); |
---|
| 1475 | CContext* context = CContext::getCurrent() ; |
---|
| 1476 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1477 | msg.append(e.what()); |
---|
| 1478 | ERROR("CNc4DataOutput::writeTimeDimension_(void)", << msg); |
---|
| 1479 | } |
---|
[391] | 1480 | } |
---|
[676] | 1481 | |
---|
[219] | 1482 | //-------------------------------------------------------------- |
---|
| 1483 | |
---|
[347] | 1484 | void CNc4DataOutput::writeField_(CField* field) |
---|
[219] | 1485 | { |
---|
[993] | 1486 | CContext* context = CContext::getCurrent() ; |
---|
| 1487 | CContextServer* server=context->server ; |
---|
[300] | 1488 | |
---|
[993] | 1489 | std::vector<StdString> dims, coodinates; |
---|
| 1490 | CGrid* grid = field->grid; |
---|
| 1491 | if (!grid->doGridHaveDataToWrite()) |
---|
[567] | 1492 | if (SuperClass::type==MULTI_FILE) return ; |
---|
[488] | 1493 | |
---|
[993] | 1494 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
| 1495 | int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0; |
---|
| 1496 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 1497 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
[999] | 1498 | std::vector<StdString> scalarList = grid->getScalarList(); |
---|
[219] | 1499 | |
---|
[993] | 1500 | StdString timeid = getTimeCounterName(); |
---|
| 1501 | StdString dimXid,dimYid; |
---|
| 1502 | std::deque<StdString> dimIdList, dimCoordList; |
---|
| 1503 | bool hasArea = false; |
---|
| 1504 | StdString cellMeasures = "area:"; |
---|
| 1505 | bool compressedOutput = !field->indexed_output.isEmpty() && field->indexed_output; |
---|
[676] | 1506 | |
---|
[993] | 1507 | for (int i = 0; i < numElement; ++i) |
---|
| 1508 | { |
---|
| 1509 | if (2 == axisDomainOrder(i)) |
---|
| 1510 | { |
---|
[999] | 1511 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
[993] | 1512 | StdString domId = domain->getDomainOutputName(); |
---|
| 1513 | StdString appendDomId = singleDomain ? "" : "_" + domId ; |
---|
[676] | 1514 | |
---|
[993] | 1515 | if (compressedOutput && domain->isCompressible() && domain->type != CDomain::type_attr::unstructured) |
---|
[879] | 1516 | { |
---|
[993] | 1517 | dimIdList.push_back(domId + "_points"); |
---|
| 1518 | field->setUseCompressedOutput(); |
---|
[879] | 1519 | } |
---|
[993] | 1520 | |
---|
| 1521 | switch (domain->type) |
---|
[879] | 1522 | { |
---|
[993] | 1523 | case CDomain::type_attr::curvilinear: |
---|
| 1524 | if (!compressedOutput || !domain->isCompressible()) |
---|
| 1525 | { |
---|
| 1526 | dimXid = StdString("x").append(appendDomId); |
---|
| 1527 | dimIdList.push_back(dimXid); |
---|
| 1528 | dimYid = StdString("y").append(appendDomId); |
---|
| 1529 | dimIdList.push_back(dimYid); |
---|
| 1530 | } |
---|
| 1531 | dimCoordList.push_back(StdString("nav_lon").append(appendDomId)); |
---|
| 1532 | dimCoordList.push_back(StdString("nav_lat").append(appendDomId)); |
---|
| 1533 | break ; |
---|
| 1534 | case CDomain::type_attr::rectilinear: |
---|
| 1535 | if (!compressedOutput || !domain->isCompressible()) |
---|
| 1536 | { |
---|
| 1537 | dimXid = StdString("lon").append(appendDomId); |
---|
| 1538 | dimIdList.push_back(dimXid); |
---|
| 1539 | dimYid = StdString("lat").append(appendDomId); |
---|
| 1540 | dimIdList.push_back(dimYid); |
---|
| 1541 | } |
---|
| 1542 | break ; |
---|
| 1543 | case CDomain::type_attr::unstructured: |
---|
| 1544 | { |
---|
| 1545 | if (SuperClassWriter::useCFConvention) |
---|
| 1546 | { |
---|
| 1547 | dimXid = StdString("cell").append(appendDomId); |
---|
| 1548 | dimIdList.push_back(dimXid); |
---|
| 1549 | dimCoordList.push_back(StdString("lon").append(appendDomId)); |
---|
| 1550 | dimCoordList.push_back(StdString("lat").append(appendDomId)); |
---|
| 1551 | } |
---|
| 1552 | else |
---|
| 1553 | { |
---|
| 1554 | StdString domainName = domain->name; |
---|
| 1555 | if (domain->nvertex == 1) |
---|
| 1556 | { |
---|
| 1557 | dimXid = "n" + domainName + "_node"; |
---|
| 1558 | dimIdList.push_back(dimXid); |
---|
| 1559 | dimCoordList.push_back(StdString(domainName + "_node_x")); |
---|
| 1560 | dimCoordList.push_back(StdString(domainName + "_node_y")); |
---|
| 1561 | } |
---|
| 1562 | else if (domain->nvertex == 2) |
---|
| 1563 | { |
---|
| 1564 | dimXid = "n" + domainName + "_edge"; |
---|
| 1565 | dimIdList.push_back(dimXid); |
---|
| 1566 | dimCoordList.push_back(StdString(domainName + "_edge_x")); |
---|
| 1567 | dimCoordList.push_back(StdString(domainName + "_edge_y")); |
---|
| 1568 | } |
---|
| 1569 | else |
---|
| 1570 | { |
---|
| 1571 | dimXid = "n" + domainName + "_face"; |
---|
| 1572 | dimIdList.push_back(dimXid); |
---|
| 1573 | dimCoordList.push_back(StdString(domainName + "_face_x")); |
---|
| 1574 | dimCoordList.push_back(StdString(domainName + "_face_y")); |
---|
| 1575 | } |
---|
| 1576 | } // ugrid convention |
---|
| 1577 | } // case unstructured domain |
---|
[879] | 1578 | } |
---|
[993] | 1579 | |
---|
| 1580 | if (domain->hasArea) |
---|
[879] | 1581 | { |
---|
[993] | 1582 | hasArea = true; |
---|
| 1583 | cellMeasures += " area" + appendDomId; |
---|
[879] | 1584 | } |
---|
[993] | 1585 | ++idxDomain; |
---|
| 1586 | } |
---|
| 1587 | else if (1 == axisDomainOrder(i)) |
---|
| 1588 | { |
---|
| 1589 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
| 1590 | StdString axisId = axis->getAxisOutputName(); |
---|
[878] | 1591 | |
---|
[993] | 1592 | if (compressedOutput && axis->isCompressible()) |
---|
| 1593 | { |
---|
| 1594 | dimIdList.push_back(axisId + "_points"); |
---|
| 1595 | field->setUseCompressedOutput(); |
---|
| 1596 | } |
---|
| 1597 | else |
---|
| 1598 | dimIdList.push_back(axisId); |
---|
[676] | 1599 | |
---|
[993] | 1600 | dimCoordList.push_back(axisId); |
---|
| 1601 | ++idxAxis; |
---|
| 1602 | } |
---|
| 1603 | else // scalar |
---|
| 1604 | { |
---|
[887] | 1605 | /* Do nothing here */ |
---|
[993] | 1606 | } |
---|
| 1607 | } |
---|
[488] | 1608 | |
---|
| 1609 | /* |
---|
[300] | 1610 | StdString lonid_loc = (server->intraCommSize > 1) |
---|
[318] | 1611 | ? StdString("lon").append(appendDomid).append("_local") |
---|
[278] | 1612 | : lonid; |
---|
[300] | 1613 | StdString latid_loc = (server->intraCommSize > 1) |
---|
[318] | 1614 | ? StdString("lat").append(appendDomid).append("_local") |
---|
[278] | 1615 | : latid; |
---|
[391] | 1616 | */ |
---|
[993] | 1617 | StdString fieldid = field->getFieldOutputName(); |
---|
[219] | 1618 | |
---|
[993] | 1619 | nc_type type ; |
---|
| 1620 | if (field->prec.isEmpty()) type = NC_FLOAT ; |
---|
| 1621 | else |
---|
| 1622 | { |
---|
| 1623 | if (field->prec==2) type = NC_SHORT ; |
---|
| 1624 | else if (field->prec==4) type = NC_FLOAT ; |
---|
| 1625 | else if (field->prec==8) type = NC_DOUBLE ; |
---|
| 1626 | } |
---|
[488] | 1627 | |
---|
[993] | 1628 | bool wtime = !(!field->operation.isEmpty() && field->getOperationTimeType() == func::CFunctor::once); |
---|
[488] | 1629 | |
---|
[993] | 1630 | if (wtime) |
---|
| 1631 | { |
---|
[488] | 1632 | |
---|
[993] | 1633 | //StdOStringStream oss; |
---|
| 1634 | // oss << "time_" << field->operation.getValue() |
---|
| 1635 | // << "_" << field->getRelFile()->output_freq.getValue(); |
---|
[488] | 1636 | //oss |
---|
[993] | 1637 | if (field->getOperationTimeType() == func::CFunctor::instant) coodinates.push_back(string("time_instant")); |
---|
| 1638 | else if (field->getOperationTimeType() == func::CFunctor::centered) coodinates.push_back(string("time_centered")); |
---|
| 1639 | dims.push_back(timeid); |
---|
| 1640 | } |
---|
[219] | 1641 | |
---|
[993] | 1642 | if (compressedOutput && grid->isCompressible()) |
---|
| 1643 | { |
---|
| 1644 | dims.push_back(grid->getId() + "_points"); |
---|
| 1645 | field->setUseCompressedOutput(); |
---|
| 1646 | } |
---|
| 1647 | else |
---|
| 1648 | { |
---|
| 1649 | while (!dimIdList.empty()) |
---|
| 1650 | { |
---|
| 1651 | dims.push_back(dimIdList.back()); |
---|
| 1652 | dimIdList.pop_back(); |
---|
| 1653 | } |
---|
| 1654 | } |
---|
[219] | 1655 | |
---|
[993] | 1656 | while (!dimCoordList.empty()) |
---|
| 1657 | { |
---|
| 1658 | coodinates.push_back(dimCoordList.back()); |
---|
| 1659 | dimCoordList.pop_back(); |
---|
| 1660 | } |
---|
[219] | 1661 | |
---|
[993] | 1662 | try |
---|
| 1663 | { |
---|
[498] | 1664 | SuperClassWriter::addVariable(fieldid, type, dims); |
---|
[488] | 1665 | |
---|
[498] | 1666 | if (!field->standard_name.isEmpty()) |
---|
| 1667 | SuperClassWriter::addAttribute |
---|
| 1668 | ("standard_name", field->standard_name.getValue(), &fieldid); |
---|
[219] | 1669 | |
---|
[498] | 1670 | if (!field->long_name.isEmpty()) |
---|
| 1671 | SuperClassWriter::addAttribute |
---|
| 1672 | ("long_name", field->long_name.getValue(), &fieldid); |
---|
[219] | 1673 | |
---|
[498] | 1674 | if (!field->unit.isEmpty()) |
---|
| 1675 | SuperClassWriter::addAttribute |
---|
| 1676 | ("units", field->unit.getValue(), &fieldid); |
---|
[463] | 1677 | |
---|
[993] | 1678 | // Ugrid field attributes "mesh" and "location" |
---|
| 1679 | if (!SuperClassWriter::useCFConvention) |
---|
| 1680 | { |
---|
[999] | 1681 | if (!domainList.empty()) |
---|
| 1682 | { |
---|
| 1683 | CDomain* domain = CDomain::get(domainList[0]); // Suppose that we have only domain |
---|
| 1684 | StdString mesh = domain->name; |
---|
| 1685 | SuperClassWriter::addAttribute("mesh", mesh, &fieldid); |
---|
| 1686 | StdString location; |
---|
| 1687 | if (domain->nvertex == 1) |
---|
| 1688 | location = "node"; |
---|
| 1689 | else if (domain->nvertex == 2) |
---|
| 1690 | location = "edge"; |
---|
| 1691 | else if (domain->nvertex > 2) |
---|
| 1692 | location = "face"; |
---|
| 1693 | SuperClassWriter::addAttribute("location", location, &fieldid); |
---|
| 1694 | } |
---|
| 1695 | |
---|
[993] | 1696 | } |
---|
| 1697 | |
---|
| 1698 | if (!field->valid_min.isEmpty()) |
---|
[498] | 1699 | SuperClassWriter::addAttribute |
---|
| 1700 | ("valid_min", field->valid_min.getValue(), &fieldid); |
---|
[463] | 1701 | |
---|
[498] | 1702 | if (!field->valid_max.isEmpty()) |
---|
| 1703 | SuperClassWriter::addAttribute |
---|
| 1704 | ("valid_max", field->valid_max.getValue(), &fieldid); |
---|
[464] | 1705 | |
---|
[498] | 1706 | if (!field->scale_factor.isEmpty()) |
---|
| 1707 | SuperClassWriter::addAttribute |
---|
| 1708 | ("scale_factor", field->scale_factor.getValue(), &fieldid); |
---|
[464] | 1709 | |
---|
[498] | 1710 | if (!field->add_offset.isEmpty()) |
---|
| 1711 | SuperClassWriter::addAttribute |
---|
| 1712 | ("add_offset", field->add_offset.getValue(), &fieldid); |
---|
[488] | 1713 | |
---|
[498] | 1714 | SuperClassWriter::addAttribute |
---|
| 1715 | ("online_operation", field->operation.getValue(), &fieldid); |
---|
[472] | 1716 | |
---|
[498] | 1717 | // write child variables as attributes |
---|
[488] | 1718 | |
---|
| 1719 | |
---|
[498] | 1720 | vector<CVariable*> listVars = field->getAllVariables() ; |
---|
| 1721 | for (vector<CVariable*>::iterator it = listVars.begin() ;it != listVars.end(); it++) writeAttribute_(*it, fieldid) ; |
---|
[472] | 1722 | |
---|
[990] | 1723 | bool alreadyAddCellMethod = false; |
---|
| 1724 | StdString cellMethodsPrefix(""), cellMethodsSuffix(""); |
---|
| 1725 | if (!field->cell_methods.isEmpty()) |
---|
| 1726 | { |
---|
| 1727 | StdString cellMethodString = field->cell_methods; |
---|
| 1728 | if (field->cell_methods_mode.isEmpty() || |
---|
| 1729 | (CField::cell_methods_mode_attr::overwrite == field->cell_methods_mode)) |
---|
| 1730 | { |
---|
| 1731 | SuperClassWriter::addAttribute("cell_methods", cellMethodString, &fieldid); |
---|
| 1732 | alreadyAddCellMethod = true; |
---|
| 1733 | } |
---|
| 1734 | else |
---|
| 1735 | { |
---|
| 1736 | switch (field->cell_methods_mode) |
---|
| 1737 | { |
---|
| 1738 | case (CField::cell_methods_mode_attr::prefix): |
---|
| 1739 | cellMethodsPrefix = cellMethodString; |
---|
| 1740 | cellMethodsPrefix += " "; |
---|
| 1741 | break; |
---|
| 1742 | case (CField::cell_methods_mode_attr::suffix): |
---|
| 1743 | cellMethodsSuffix = " "; |
---|
| 1744 | cellMethodsSuffix += cellMethodString; |
---|
| 1745 | break; |
---|
| 1746 | case (CField::cell_methods_mode_attr::none): |
---|
| 1747 | break; |
---|
| 1748 | default: |
---|
| 1749 | break; |
---|
| 1750 | } |
---|
| 1751 | } |
---|
| 1752 | } |
---|
[488] | 1753 | |
---|
[990] | 1754 | |
---|
[498] | 1755 | if (wtime) |
---|
| 1756 | { |
---|
[614] | 1757 | CDuration freqOp = field->freq_op.getValue(); |
---|
| 1758 | freqOp.solveTimeStep(*context->calendar); |
---|
| 1759 | StdString freqOpStr = freqOp.toStringUDUnits(); |
---|
[612] | 1760 | SuperClassWriter::addAttribute("interval_operation", freqOpStr, &fieldid); |
---|
[437] | 1761 | |
---|
[614] | 1762 | CDuration freqOut = field->getRelFile()->output_freq.getValue(); |
---|
| 1763 | freqOut.solveTimeStep(*context->calendar); |
---|
| 1764 | SuperClassWriter::addAttribute("interval_write", freqOut.toStringUDUnits(), &fieldid); |
---|
[612] | 1765 | |
---|
[990] | 1766 | StdString cellMethods(cellMethodsPrefix + "time: "); |
---|
[612] | 1767 | if (field->operation.getValue() == "instant") cellMethods += "point"; |
---|
| 1768 | else if (field->operation.getValue() == "average") cellMethods += "mean"; |
---|
| 1769 | else if (field->operation.getValue() == "accumulate") cellMethods += "sum"; |
---|
| 1770 | else cellMethods += field->operation; |
---|
[614] | 1771 | if (freqOp.resolve(*context->calendar) != freqOut.resolve(*context->calendar)) |
---|
| 1772 | cellMethods += " (interval: " + freqOpStr + ")"; |
---|
[990] | 1773 | cellMethods += cellMethodsSuffix; |
---|
| 1774 | if (!alreadyAddCellMethod) |
---|
| 1775 | SuperClassWriter::addAttribute("cell_methods", cellMethods, &fieldid); |
---|
[498] | 1776 | } |
---|
[488] | 1777 | |
---|
[611] | 1778 | if (hasArea) |
---|
| 1779 | SuperClassWriter::addAttribute("cell_measures", cellMeasures, &fieldid); |
---|
| 1780 | |
---|
[498] | 1781 | if (!field->default_value.isEmpty()) |
---|
| 1782 | { |
---|
| 1783 | double default_value = field->default_value.getValue(); |
---|
| 1784 | float fdefault_value = (float)default_value; |
---|
| 1785 | if (type == NC_DOUBLE) |
---|
| 1786 | SuperClassWriter::setDefaultValue(fieldid, &default_value); |
---|
| 1787 | else |
---|
| 1788 | SuperClassWriter::setDefaultValue(fieldid, &fdefault_value); |
---|
| 1789 | } |
---|
| 1790 | else |
---|
[517] | 1791 | SuperClassWriter::setDefaultValue(fieldid, (double*)NULL); |
---|
[219] | 1792 | |
---|
[606] | 1793 | if (field->compression_level.isEmpty()) |
---|
| 1794 | field->compression_level = field->file->compression_level.isEmpty() ? 0 : field->file->compression_level; |
---|
| 1795 | SuperClassWriter::setCompressionLevel(fieldid, field->compression_level); |
---|
| 1796 | |
---|
[878] | 1797 | { // Ecriture des coordonnes |
---|
[488] | 1798 | |
---|
[498] | 1799 | StdString coordstr; //boost::algorithm::join(coodinates, " ") |
---|
| 1800 | std::vector<StdString>::iterator |
---|
| 1801 | itc = coodinates.begin(), endc = coodinates.end(); |
---|
[488] | 1802 | |
---|
[498] | 1803 | for (; itc!= endc; itc++) |
---|
| 1804 | { |
---|
| 1805 | StdString & coord = *itc; |
---|
| 1806 | if (itc+1 != endc) |
---|
| 1807 | coordstr.append(coord).append(" "); |
---|
| 1808 | else coordstr.append(coord); |
---|
| 1809 | } |
---|
[219] | 1810 | |
---|
[498] | 1811 | SuperClassWriter::addAttribute("coordinates", coordstr, &fieldid); |
---|
[219] | 1812 | |
---|
[498] | 1813 | } |
---|
[219] | 1814 | } |
---|
[498] | 1815 | catch (CNetCdfException& e) |
---|
| 1816 | { |
---|
| 1817 | StdString msg("On writing field : "); |
---|
| 1818 | msg.append(fieldid); msg.append("\n"); |
---|
| 1819 | msg.append("In the context : "); |
---|
| 1820 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1821 | msg.append(e.what()); |
---|
| 1822 | ERROR("CNc4DataOutput::writeField_(CField* field)", << msg); |
---|
| 1823 | } |
---|
[879] | 1824 | } // writeField_() |
---|
[219] | 1825 | |
---|
| 1826 | //-------------------------------------------------------------- |
---|
| 1827 | |
---|
[347] | 1828 | void CNc4DataOutput::writeFile_ (CFile* file) |
---|
[219] | 1829 | { |
---|
[773] | 1830 | StdString filename = file->getFileOutputName(); |
---|
[219] | 1831 | StdString description = (!file->description.isEmpty()) |
---|
| 1832 | ? file->description.getValue() |
---|
[335] | 1833 | : StdString("Created by xios"); |
---|
[609] | 1834 | |
---|
| 1835 | singleDomain = (file->nbDomains == 1); |
---|
| 1836 | |
---|
[498] | 1837 | try |
---|
| 1838 | { |
---|
[879] | 1839 | if (SuperClassWriter::useCFConvention) |
---|
[878] | 1840 | this->writeFileAttributes(filename, description, |
---|
[989] | 1841 | StdString("CF-1.6"), |
---|
[878] | 1842 | StdString("An IPSL model"), |
---|
| 1843 | this->getTimeStamp()); |
---|
| 1844 | else |
---|
| 1845 | this->writeFileAttributes(filename, description, |
---|
| 1846 | StdString("UGRID"), |
---|
| 1847 | StdString("An IPSL model"), |
---|
| 1848 | this->getTimeStamp()); |
---|
[609] | 1849 | |
---|
[878] | 1850 | |
---|
[701] | 1851 | if (!appendMode) |
---|
| 1852 | SuperClassWriter::addDimension("axis_nbounds", 2); |
---|
[498] | 1853 | } |
---|
| 1854 | catch (CNetCdfException& e) |
---|
| 1855 | { |
---|
| 1856 | StdString msg("On writing file : "); |
---|
| 1857 | msg.append(filename); msg.append("\n"); |
---|
| 1858 | msg.append("In the context : "); |
---|
| 1859 | CContext* context = CContext::getCurrent() ; |
---|
| 1860 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1861 | msg.append(e.what()); |
---|
| 1862 | ERROR("CNc4DataOutput::writeFile_ (CFile* file)", << msg); |
---|
| 1863 | } |
---|
[219] | 1864 | } |
---|
[488] | 1865 | |
---|
[472] | 1866 | void CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId) |
---|
| 1867 | { |
---|
[773] | 1868 | StdString name = var->getVariableOutputName(); |
---|
[488] | 1869 | |
---|
[498] | 1870 | try |
---|
| 1871 | { |
---|
[527] | 1872 | if (var->type.getValue() == CVariable::type_attr::t_int || var->type.getValue() == CVariable::type_attr::t_int32) |
---|
| 1873 | addAttribute(name, var->getData<int>(), &fieldId); |
---|
| 1874 | else if (var->type.getValue() == CVariable::type_attr::t_int16) |
---|
| 1875 | addAttribute(name, var->getData<short int>(), &fieldId); |
---|
| 1876 | else if (var->type.getValue() == CVariable::type_attr::t_float) |
---|
| 1877 | addAttribute(name, var->getData<float>(), &fieldId); |
---|
| 1878 | else if (var->type.getValue() == CVariable::type_attr::t_double) |
---|
| 1879 | addAttribute(name, var->getData<double>(), &fieldId); |
---|
| 1880 | else if (var->type.getValue() == CVariable::type_attr::t_string) |
---|
| 1881 | addAttribute(name, var->getData<string>(), &fieldId); |
---|
| 1882 | else |
---|
| 1883 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", |
---|
| 1884 | << "Unsupported variable of type " << var->type.getStringValue()); |
---|
[498] | 1885 | } |
---|
| 1886 | catch (CNetCdfException& e) |
---|
| 1887 | { |
---|
| 1888 | StdString msg("On writing attributes of variable with name : "); |
---|
| 1889 | msg.append(name); msg.append("in the field "); msg.append(fieldId); msg.append("\n"); |
---|
| 1890 | msg.append("In the context : "); |
---|
| 1891 | CContext* context = CContext::getCurrent() ; |
---|
| 1892 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1893 | msg.append(e.what()); |
---|
| 1894 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", << msg); |
---|
| 1895 | } |
---|
[472] | 1896 | } |
---|
[488] | 1897 | |
---|
[472] | 1898 | void CNc4DataOutput::writeAttribute_ (CVariable* var) |
---|
| 1899 | { |
---|
[773] | 1900 | StdString name = var->getVariableOutputName(); |
---|
| 1901 | |
---|
[498] | 1902 | try |
---|
| 1903 | { |
---|
[527] | 1904 | if (var->type.getValue() == CVariable::type_attr::t_int || var->type.getValue() == CVariable::type_attr::t_int32) |
---|
| 1905 | addAttribute(name, var->getData<int>()); |
---|
| 1906 | else if (var->type.getValue() == CVariable::type_attr::t_int16) |
---|
| 1907 | addAttribute(name, var->getData<short int>()); |
---|
| 1908 | else if (var->type.getValue() == CVariable::type_attr::t_float) |
---|
| 1909 | addAttribute(name, var->getData<float>()); |
---|
| 1910 | else if (var->type.getValue() == CVariable::type_attr::t_double) |
---|
| 1911 | addAttribute(name, var->getData<double>()); |
---|
| 1912 | else if (var->type.getValue() == CVariable::type_attr::t_string) |
---|
| 1913 | addAttribute(name, var->getData<string>()); |
---|
| 1914 | else |
---|
| 1915 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", |
---|
| 1916 | << "Unsupported variable of type " << var->type.getStringValue()); |
---|
[498] | 1917 | } |
---|
| 1918 | catch (CNetCdfException& e) |
---|
| 1919 | { |
---|
| 1920 | StdString msg("On writing attributes of variable with name : "); |
---|
| 1921 | msg.append(name); msg.append("\n"); |
---|
| 1922 | msg.append("In the context : "); |
---|
| 1923 | CContext* context = CContext::getCurrent() ; |
---|
| 1924 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1925 | msg.append(e.what()); |
---|
| 1926 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", << msg); |
---|
| 1927 | } |
---|
[488] | 1928 | } |
---|
| 1929 | |
---|
[321] | 1930 | void CNc4DataOutput::syncFile_ (void) |
---|
| 1931 | { |
---|
[498] | 1932 | try |
---|
| 1933 | { |
---|
| 1934 | SuperClassWriter::sync() ; |
---|
| 1935 | } |
---|
| 1936 | catch (CNetCdfException& e) |
---|
| 1937 | { |
---|
| 1938 | StdString msg("On synchronizing the write among processes"); |
---|
| 1939 | msg.append("In the context : "); |
---|
| 1940 | CContext* context = CContext::getCurrent() ; |
---|
| 1941 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1942 | msg.append(e.what()); |
---|
| 1943 | ERROR("CNc4DataOutput::syncFile_ (void)", << msg); |
---|
| 1944 | } |
---|
[321] | 1945 | } |
---|
[219] | 1946 | |
---|
[286] | 1947 | void CNc4DataOutput::closeFile_ (void) |
---|
| 1948 | { |
---|
[498] | 1949 | try |
---|
| 1950 | { |
---|
| 1951 | SuperClassWriter::close() ; |
---|
| 1952 | } |
---|
| 1953 | catch (CNetCdfException& e) |
---|
| 1954 | { |
---|
| 1955 | StdString msg("On closing file"); |
---|
| 1956 | msg.append("In the context : "); |
---|
| 1957 | CContext* context = CContext::getCurrent() ; |
---|
| 1958 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1959 | msg.append(e.what()); |
---|
| 1960 | ERROR("CNc4DataOutput::syncFile_ (void)", << msg); |
---|
| 1961 | } |
---|
| 1962 | |
---|
[286] | 1963 | } |
---|
| 1964 | |
---|
[219] | 1965 | //--------------------------------------------------------------- |
---|
| 1966 | |
---|
| 1967 | StdString CNc4DataOutput::getTimeStamp(void) const |
---|
| 1968 | { |
---|
| 1969 | const int buffer_size = 100; |
---|
| 1970 | time_t rawtime; |
---|
| 1971 | struct tm * timeinfo = NULL; |
---|
| 1972 | char buffer [buffer_size]; |
---|
| 1973 | |
---|
| 1974 | time ( &rawtime ); |
---|
| 1975 | timeinfo = localtime ( &rawtime ); |
---|
| 1976 | strftime (buffer, buffer_size, "%Y-%b-%d %H:%M:%S %Z", timeinfo); |
---|
| 1977 | |
---|
| 1978 | return (StdString(buffer)); |
---|
| 1979 | } |
---|
[488] | 1980 | |
---|
[219] | 1981 | //--------------------------------------------------------------- |
---|
[488] | 1982 | |
---|
[347] | 1983 | void CNc4DataOutput::writeFieldData_ (CField* field) |
---|
[219] | 1984 | { |
---|
[707] | 1985 | CContext* context = CContext::getCurrent(); |
---|
| 1986 | CContextServer* server = context->server; |
---|
| 1987 | CGrid* grid = field->grid; |
---|
[300] | 1988 | |
---|
[952] | 1989 | if (field->getNStep()<1) return ; |
---|
| 1990 | |
---|
[707] | 1991 | if (!grid->doGridHaveDataToWrite()) |
---|
| 1992 | if (SuperClass::type == MULTI_FILE || !isCollective) return; |
---|
[488] | 1993 | |
---|
[770] | 1994 | StdString fieldid = field->getFieldOutputName(); |
---|
[286] | 1995 | |
---|
[707] | 1996 | StdOStringStream oss; |
---|
| 1997 | string timeAxisId; |
---|
| 1998 | if (field->getOperationTimeType() == func::CFunctor::instant) timeAxisId = "time_instant"; |
---|
| 1999 | else if (field->getOperationTimeType() == func::CFunctor::centered) timeAxisId = "time_centered"; |
---|
[488] | 2000 | |
---|
[802] | 2001 | StdString timeBoundId = getTimeCounterName() + "_bounds"; |
---|
[449] | 2002 | |
---|
[707] | 2003 | StdString timeAxisBoundId; |
---|
| 2004 | if (field->getOperationTimeType() == func::CFunctor::instant) timeAxisBoundId = "time_instant_bounds"; |
---|
| 2005 | else if (field->getOperationTimeType() == func::CFunctor::centered) timeAxisBoundId = "time_centered_bounds"; |
---|
[488] | 2006 | |
---|
[707] | 2007 | if (!field->wasWritten()) |
---|
| 2008 | { |
---|
[1012] | 2009 | if (appendMode && field->file->record_offset.isEmpty() && |
---|
| 2010 | field->getOperationTimeType() != func::CFunctor::once) |
---|
[707] | 2011 | { |
---|
[1044] | 2012 | double factorUnit; |
---|
| 2013 | if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days) |
---|
| 2014 | factorUnit=context->getCalendar()->getDayLengthInSeconds() ; |
---|
| 2015 | else factorUnit=1 ; |
---|
| 2016 | field->resetNStep(getRecordFromTime(field->last_Write_srv,factorUnit) + 1); |
---|
[707] | 2017 | } |
---|
[488] | 2018 | |
---|
[707] | 2019 | field->setWritten(); |
---|
| 2020 | } |
---|
[488] | 2021 | |
---|
| 2022 | |
---|
[707] | 2023 | CArray<double,1> time_data(1); |
---|
| 2024 | CArray<double,1> time_data_bound(2); |
---|
| 2025 | CArray<double,1> time_counter(1); |
---|
| 2026 | CArray<double,1> time_counter_bound(2); |
---|
| 2027 | |
---|
| 2028 | bool wtime = (field->getOperationTimeType() != func::CFunctor::once); |
---|
| 2029 | |
---|
[444] | 2030 | if (wtime) |
---|
| 2031 | { |
---|
[692] | 2032 | Time lastWrite = field->last_Write_srv; |
---|
| 2033 | Time lastLastWrite = field->lastlast_Write_srv; |
---|
| 2034 | |
---|
[645] | 2035 | if (field->getOperationTimeType() == func::CFunctor::instant) |
---|
[692] | 2036 | time_data(0) = lastWrite; |
---|
| 2037 | else if (field->getOperationTimeType() == func::CFunctor::centered) |
---|
| 2038 | time_data(0) = (lastWrite + lastLastWrite) / 2; |
---|
[488] | 2039 | |
---|
[645] | 2040 | if (field->getOperationTimeType() == func::CFunctor::instant) |
---|
[692] | 2041 | time_data_bound(0) = time_data_bound(1) = lastWrite; |
---|
[645] | 2042 | else if (field->getOperationTimeType() == func::CFunctor::centered) |
---|
[488] | 2043 | { |
---|
[692] | 2044 | time_data_bound(0) = lastLastWrite; |
---|
| 2045 | time_data_bound(1) = lastWrite; |
---|
[488] | 2046 | } |
---|
[989] | 2047 | |
---|
| 2048 | if (field->file->time_counter.isEmpty()) |
---|
| 2049 | if (field->hasTimeInstant && !field->hasTimeCentered) |
---|
| 2050 | time_counter(0) = lastWrite; |
---|
| 2051 | else |
---|
| 2052 | time_counter(0) = (lastWrite + lastLastWrite) / 2; |
---|
[488] | 2053 | |
---|
[989] | 2054 | else if (field->file->time_counter == CFile::time_counter_attr::instant) |
---|
[692] | 2055 | time_counter(0) = lastWrite; |
---|
| 2056 | else if (field->file->time_counter == CFile::time_counter_attr::centered) |
---|
| 2057 | time_counter(0) = (lastWrite + lastLastWrite) / 2; |
---|
| 2058 | else if (field->file->time_counter == CFile::time_counter_attr::record) |
---|
| 2059 | time_counter(0) = field->getNStep() - 1; |
---|
| 2060 | |
---|
| 2061 | |
---|
[989] | 2062 | if (field->file->time_counter.isEmpty()) |
---|
| 2063 | if (field->hasTimeInstant && !field->hasTimeCentered) |
---|
| 2064 | time_counter_bound(0) = time_counter_bound(1) = lastWrite; |
---|
| 2065 | else |
---|
| 2066 | { |
---|
| 2067 | time_counter_bound(0) = lastLastWrite; |
---|
| 2068 | time_counter_bound(1) = lastWrite; |
---|
| 2069 | } |
---|
| 2070 | else if (field->file->time_counter == CFile::time_counter_attr::instant) |
---|
[692] | 2071 | time_counter_bound(0) = time_counter_bound(1) = lastWrite; |
---|
| 2072 | else if (field->file->time_counter == CFile::time_counter_attr::centered) |
---|
| 2073 | { |
---|
| 2074 | time_counter_bound(0) = lastLastWrite; |
---|
| 2075 | time_counter_bound(1) = lastWrite; |
---|
| 2076 | } |
---|
| 2077 | else if (field->file->time_counter == CFile::time_counter_attr::record) |
---|
| 2078 | time_counter_bound(0) = time_counter_bound(1) = field->getNStep() - 1; |
---|
[1044] | 2079 | |
---|
| 2080 | |
---|
| 2081 | |
---|
| 2082 | if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days) |
---|
| 2083 | { |
---|
| 2084 | double secByDay=context->getCalendar()->getDayLengthInSeconds() ; |
---|
| 2085 | time_data/=secByDay; |
---|
| 2086 | time_data_bound/=secByDay; |
---|
| 2087 | time_counter/=secByDay; |
---|
| 2088 | time_counter_bound/=secByDay; |
---|
| 2089 | } |
---|
[692] | 2090 | } |
---|
| 2091 | |
---|
[707] | 2092 | bool isRoot = (server->intraCommRank == 0); |
---|
[488] | 2093 | |
---|
[464] | 2094 | if (!field->scale_factor.isEmpty() || !field->add_offset.isEmpty()) |
---|
| 2095 | { |
---|
[707] | 2096 | double scaleFactor = 1.0; |
---|
| 2097 | double addOffset = 0.0; |
---|
| 2098 | if (!field->scale_factor.isEmpty()) scaleFactor = field->scale_factor; |
---|
| 2099 | if (!field->add_offset.isEmpty()) addOffset = field->add_offset; |
---|
| 2100 | field->scaleFactorAddOffset(scaleFactor, addOffset); |
---|
[464] | 2101 | } |
---|
[488] | 2102 | |
---|
[498] | 2103 | try |
---|
[219] | 2104 | { |
---|
[676] | 2105 | size_t writtenSize; |
---|
| 2106 | if (field->getUseCompressedOutput()) |
---|
| 2107 | writtenSize = grid->getNumberWrittenIndexes(); |
---|
| 2108 | else |
---|
| 2109 | writtenSize = grid->getWrittenDataSize(); |
---|
| 2110 | |
---|
| 2111 | CArray<double,1> fieldData(writtenSize); |
---|
[567] | 2112 | if (!field->default_value.isEmpty()) fieldData = field->default_value; |
---|
[676] | 2113 | |
---|
| 2114 | if (field->getUseCompressedOutput()) |
---|
| 2115 | field->outputCompressedField(fieldData); |
---|
| 2116 | else |
---|
| 2117 | field->outputField(fieldData); |
---|
| 2118 | |
---|
[707] | 2119 | if (!field->prec.isEmpty() && field->prec == 2) fieldData = round(fieldData); |
---|
[567] | 2120 | |
---|
| 2121 | switch (SuperClass::type) |
---|
[498] | 2122 | { |
---|
[567] | 2123 | case (MULTI_FILE) : |
---|
| 2124 | { |
---|
[692] | 2125 | SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1); |
---|
[567] | 2126 | if (wtime) |
---|
| 2127 | { |
---|
[692] | 2128 | SuperClassWriter::writeData(time_data, timeAxisId, isCollective, field->getNStep() - 1); |
---|
| 2129 | SuperClassWriter::writeData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1); |
---|
[989] | 2130 | if (field->file->time_counter.isEmpty() || |
---|
| 2131 | (field->file->time_counter != CFile::time_counter_attr::none)) |
---|
[692] | 2132 | { |
---|
[802] | 2133 | SuperClassWriter::writeData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1); |
---|
[989] | 2134 | if (field->file->time_counter.isEmpty() || |
---|
| 2135 | (field->file->time_counter != CFile::time_counter_attr::record)) |
---|
[692] | 2136 | SuperClassWriter::writeData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1); |
---|
| 2137 | } |
---|
[567] | 2138 | } |
---|
[707] | 2139 | break; |
---|
[567] | 2140 | } |
---|
| 2141 | case (ONE_FILE) : |
---|
| 2142 | { |
---|
[676] | 2143 | const std::vector<int>& nZoomBeginGlobal = grid->getDistributionServer()->getZoomBeginGlobal(); |
---|
| 2144 | const std::vector<int>& nZoomBeginServer = grid->getDistributionServer()->getZoomBeginServer(); |
---|
| 2145 | const std::vector<int>& nZoomSizeServer = grid->getDistributionServer()->getZoomSizeServer(); |
---|
[464] | 2146 | |
---|
[676] | 2147 | std::vector<StdSize> start, count; |
---|
[464] | 2148 | |
---|
[676] | 2149 | if (field->getUseCompressedOutput()) |
---|
| 2150 | { |
---|
| 2151 | if (grid->isCompressible()) |
---|
| 2152 | { |
---|
| 2153 | start.push_back(grid->getOffsetWrittenIndexes()); |
---|
| 2154 | count.push_back(grid->getNumberWrittenIndexes()); |
---|
| 2155 | } |
---|
| 2156 | else |
---|
| 2157 | { |
---|
[887] | 2158 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
[676] | 2159 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 2160 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
| 2161 | int numElement = axisDomainOrder.numElements(); |
---|
| 2162 | int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
---|
| 2163 | int idx = nZoomBeginGlobal.size() - 1; |
---|
[464] | 2164 | |
---|
[676] | 2165 | start.reserve(nZoomBeginGlobal.size()); |
---|
| 2166 | count.reserve(nZoomBeginGlobal.size()); |
---|
| 2167 | |
---|
| 2168 | |
---|
| 2169 | for (int i = numElement - 1; i >= 0; --i) |
---|
| 2170 | { |
---|
[887] | 2171 | if (2 == axisDomainOrder(i)) |
---|
[676] | 2172 | { |
---|
| 2173 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
| 2174 | |
---|
| 2175 | if (domain->isCompressible()) |
---|
| 2176 | { |
---|
| 2177 | start.push_back(domain->getOffsetWrittenIndexes()); |
---|
| 2178 | count.push_back(domain->getNumberWrittenIndexes()); |
---|
[710] | 2179 | idx -= 2; |
---|
[676] | 2180 | } |
---|
| 2181 | else |
---|
| 2182 | { |
---|
[710] | 2183 | if ((domain->type) != CDomain::type_attr::unstructured) |
---|
| 2184 | { |
---|
| 2185 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2186 | count.push_back(nZoomSizeServer[idx]); |
---|
| 2187 | } |
---|
| 2188 | --idx; |
---|
[676] | 2189 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2190 | count.push_back(nZoomSizeServer[idx]); |
---|
[710] | 2191 | --idx; |
---|
[676] | 2192 | } |
---|
| 2193 | --idxDomain; |
---|
| 2194 | } |
---|
[887] | 2195 | else if (1 == axisDomainOrder(i)) |
---|
[676] | 2196 | { |
---|
| 2197 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
| 2198 | |
---|
| 2199 | if (axis->isCompressible()) |
---|
| 2200 | { |
---|
| 2201 | start.push_back(axis->getOffsetWrittenIndexes()); |
---|
| 2202 | count.push_back(axis->getNumberWrittenIndexes()); |
---|
| 2203 | } |
---|
| 2204 | else |
---|
| 2205 | { |
---|
| 2206 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2207 | count.push_back(nZoomSizeServer[idx]); |
---|
| 2208 | } |
---|
| 2209 | |
---|
| 2210 | --idxAxis; |
---|
| 2211 | --idx; |
---|
| 2212 | } |
---|
| 2213 | } |
---|
| 2214 | } |
---|
| 2215 | } |
---|
| 2216 | else |
---|
[498] | 2217 | { |
---|
[705] | 2218 | |
---|
[887] | 2219 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
[705] | 2220 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 2221 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
| 2222 | int numElement = axisDomainOrder.numElements(); |
---|
| 2223 | int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
---|
| 2224 | int idx = nZoomBeginGlobal.size() - 1; |
---|
| 2225 | |
---|
| 2226 | start.reserve(nZoomBeginGlobal.size()); |
---|
| 2227 | count.reserve(nZoomBeginGlobal.size()); |
---|
| 2228 | |
---|
| 2229 | for (int i = numElement - 1; i >= 0; --i) |
---|
| 2230 | { |
---|
[887] | 2231 | if (2 == axisDomainOrder(i)) |
---|
[705] | 2232 | { |
---|
| 2233 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
[710] | 2234 | if ((domain->type) != CDomain::type_attr::unstructured) |
---|
[705] | 2235 | { |
---|
| 2236 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2237 | count.push_back(nZoomSizeServer[idx]); |
---|
| 2238 | } |
---|
| 2239 | --idx ; |
---|
| 2240 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2241 | count.push_back(nZoomSizeServer[idx]); |
---|
| 2242 | --idx ; |
---|
| 2243 | --idxDomain; |
---|
| 2244 | } |
---|
[887] | 2245 | else if (1 == axisDomainOrder(i)) |
---|
[705] | 2246 | { |
---|
| 2247 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2248 | count.push_back(nZoomSizeServer[idx]); |
---|
| 2249 | --idx; |
---|
[887] | 2250 | } |
---|
| 2251 | else |
---|
| 2252 | { |
---|
| 2253 | if (1 == axisDomainOrder.numElements()) |
---|
| 2254 | { |
---|
| 2255 | start.push_back(0); |
---|
| 2256 | count.push_back(1); |
---|
| 2257 | } |
---|
| 2258 | --idx; |
---|
| 2259 | } |
---|
[705] | 2260 | } |
---|
[498] | 2261 | } |
---|
[488] | 2262 | |
---|
[676] | 2263 | SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1, &start, &count); |
---|
[586] | 2264 | if (wtime) |
---|
| 2265 | { |
---|
[692] | 2266 | SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot); |
---|
| 2267 | SuperClassWriter::writeTimeAxisData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot); |
---|
[989] | 2268 | if (field->file->time_counter.isEmpty() || |
---|
| 2269 | (field->file->time_counter != CFile::time_counter_attr::none)) |
---|
[692] | 2270 | { |
---|
[802] | 2271 | SuperClassWriter::writeTimeAxisData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1, isRoot); |
---|
[989] | 2272 | if (field->file->time_counter.isEmpty() || |
---|
| 2273 | (field->file->time_counter != CFile::time_counter_attr::record)) |
---|
[692] | 2274 | SuperClassWriter::writeTimeAxisData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot); |
---|
| 2275 | } |
---|
[586] | 2276 | } |
---|
| 2277 | |
---|
| 2278 | break; |
---|
[286] | 2279 | } |
---|
[567] | 2280 | } |
---|
[219] | 2281 | } |
---|
[498] | 2282 | catch (CNetCdfException& e) |
---|
| 2283 | { |
---|
| 2284 | StdString msg("On writing field data: "); |
---|
| 2285 | msg.append(fieldid); msg.append("\n"); |
---|
| 2286 | msg.append("In the context : "); |
---|
| 2287 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2288 | msg.append(e.what()); |
---|
| 2289 | ERROR("CNc4DataOutput::writeFieldData_ (CField* field)", << msg); |
---|
| 2290 | } |
---|
[219] | 2291 | } |
---|
| 2292 | |
---|
| 2293 | //--------------------------------------------------------------- |
---|
| 2294 | |
---|
| 2295 | void CNc4DataOutput::writeTimeAxis_ |
---|
[347] | 2296 | (CField* field, |
---|
[343] | 2297 | const boost::shared_ptr<CCalendar> cal) |
---|
[219] | 2298 | { |
---|
| 2299 | StdOStringStream oss; |
---|
[488] | 2300 | |
---|
[645] | 2301 | if (field->getOperationTimeType() == func::CFunctor::once) return ; |
---|
[488] | 2302 | |
---|
[449] | 2303 | // oss << "time_" << field->operation.getValue() |
---|
| 2304 | // << "_" << field->getRelFile()->output_freq.getValue(); |
---|
[488] | 2305 | |
---|
[449] | 2306 | // StdString axisid = oss.str(); |
---|
[645] | 2307 | // if (field->getOperationTimeType() == func::CFunctor::centered) axisid="time_centered" ; |
---|
| 2308 | // else if (field->getOperationTimeType() == func::CFunctor::instant) axisid="time_instant" ; |
---|
[219] | 2309 | |
---|
[488] | 2310 | StdString axisid("time_centered") ; |
---|
| 2311 | StdString axisBoundId("time_centered_bounds"); |
---|
[802] | 2312 | StdString timeid(getTimeCounterName()); |
---|
[614] | 2313 | StdString timeBoundId("axis_nbounds"); |
---|
[1044] | 2314 | |
---|
| 2315 | StdString strTimeUnits ; |
---|
| 2316 | if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days) strTimeUnits="days since " ; |
---|
| 2317 | else strTimeUnits="seconds since " ; |
---|
[989] | 2318 | |
---|
[645] | 2319 | if (field->getOperationTimeType() == func::CFunctor::instant) |
---|
[488] | 2320 | { |
---|
| 2321 | axisid = "time_instant"; |
---|
| 2322 | axisBoundId = "time_instant_bounds"; |
---|
[989] | 2323 | field->hasTimeInstant = true; |
---|
[488] | 2324 | } |
---|
| 2325 | |
---|
[989] | 2326 | if (field->getOperationTimeType() == func::CFunctor::centered) |
---|
| 2327 | { |
---|
| 2328 | field->hasTimeCentered = true; |
---|
| 2329 | } |
---|
| 2330 | |
---|
[498] | 2331 | try |
---|
[219] | 2332 | { |
---|
[498] | 2333 | // Adding time_instant or time_centered |
---|
| 2334 | std::vector<StdString> dims; |
---|
| 2335 | dims.push_back(timeid); |
---|
| 2336 | if (!SuperClassWriter::varExist(axisid)) |
---|
| 2337 | { |
---|
| 2338 | SuperClassWriter::addVariable(axisid, NC_DOUBLE, dims); |
---|
[488] | 2339 | |
---|
[498] | 2340 | CDate timeOrigin=cal->getTimeOrigin() ; |
---|
| 2341 | StdOStringStream oss2; |
---|
| 2342 | // oss2<<initDate.getYear()<<"-"<<initDate.getMonth()<<"-"<<initDate.getDay()<<" " |
---|
| 2343 | // <<initDate.getHour()<<"-"<<initDate.getMinute()<<"-"<<initDate.getSecond() ; |
---|
| 2344 | StdString strInitdate=oss2.str() ; |
---|
| 2345 | StdString strTimeOrigin=timeOrigin.toString() ; |
---|
| 2346 | this->writeTimeAxisAttributes |
---|
[1044] | 2347 | (axisid, cal->getType(),strTimeUnits+strTimeOrigin, |
---|
[498] | 2348 | strTimeOrigin, axisBoundId); |
---|
| 2349 | } |
---|
[219] | 2350 | |
---|
[498] | 2351 | // Adding time_instant_bounds or time_centered_bounds variables |
---|
| 2352 | if (!SuperClassWriter::varExist(axisBoundId)) |
---|
| 2353 | { |
---|
| 2354 | dims.clear() ; |
---|
| 2355 | dims.push_back(timeid); |
---|
| 2356 | dims.push_back(timeBoundId); |
---|
| 2357 | SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims); |
---|
| 2358 | } |
---|
[488] | 2359 | |
---|
[989] | 2360 | if (field->file->time_counter.isEmpty() || |
---|
| 2361 | (field->file->time_counter != CFile::time_counter_attr::none)) |
---|
[498] | 2362 | { |
---|
[692] | 2363 | // Adding time_counter |
---|
[802] | 2364 | axisid = getTimeCounterName(); |
---|
| 2365 | axisBoundId = getTimeCounterName() + "_bounds"; |
---|
[692] | 2366 | dims.clear(); |
---|
| 2367 | dims.push_back(timeid); |
---|
| 2368 | if (!SuperClassWriter::varExist(axisid)) |
---|
| 2369 | { |
---|
| 2370 | SuperClassWriter::addVariable(axisid, NC_DOUBLE, dims); |
---|
| 2371 | SuperClassWriter::addAttribute("axis", string("T"), &axisid); |
---|
[488] | 2372 | |
---|
[989] | 2373 | if (field->file->time_counter.isEmpty() || |
---|
| 2374 | (field->file->time_counter != CFile::time_counter_attr::record)) |
---|
[692] | 2375 | { |
---|
| 2376 | CDate timeOrigin = cal->getTimeOrigin(); |
---|
| 2377 | StdString strTimeOrigin = timeOrigin.toString(); |
---|
[498] | 2378 | |
---|
[692] | 2379 | this->writeTimeAxisAttributes(axisid, cal->getType(), |
---|
[1044] | 2380 | strTimeUnits+strTimeOrigin, |
---|
[692] | 2381 | strTimeOrigin, axisBoundId); |
---|
| 2382 | } |
---|
| 2383 | } |
---|
| 2384 | |
---|
| 2385 | // Adding time_counter_bound dimension |
---|
[989] | 2386 | if (field->file->time_counter.isEmpty() || |
---|
| 2387 | (field->file->time_counter != CFile::time_counter_attr::record)) |
---|
[692] | 2388 | { |
---|
| 2389 | if (!SuperClassWriter::varExist(axisBoundId)) |
---|
| 2390 | { |
---|
| 2391 | dims.clear(); |
---|
| 2392 | dims.push_back(timeid); |
---|
| 2393 | dims.push_back(timeBoundId); |
---|
| 2394 | SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims); |
---|
| 2395 | } |
---|
| 2396 | } |
---|
[498] | 2397 | } |
---|
[488] | 2398 | } |
---|
[498] | 2399 | catch (CNetCdfException& e) |
---|
[488] | 2400 | { |
---|
[498] | 2401 | StdString msg("On writing time axis data: "); |
---|
| 2402 | msg.append("In the context : "); |
---|
| 2403 | CContext* context = CContext::getCurrent() ; |
---|
| 2404 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2405 | msg.append(e.what()); |
---|
| 2406 | ERROR("CNc4DataOutput::writeTimeAxis_ (CField* field, \ |
---|
| 2407 | const boost::shared_ptr<CCalendar> cal)", << msg); |
---|
[488] | 2408 | } |
---|
[219] | 2409 | } |
---|
| 2410 | |
---|
| 2411 | //--------------------------------------------------------------- |
---|
[488] | 2412 | |
---|
[219] | 2413 | void CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, |
---|
| 2414 | const StdString & calendar, |
---|
| 2415 | const StdString & units, |
---|
| 2416 | const StdString & time_origin, |
---|
[488] | 2417 | const StdString & time_bounds, |
---|
[219] | 2418 | const StdString & standard_name, |
---|
[613] | 2419 | const StdString & long_name) |
---|
[219] | 2420 | { |
---|
[498] | 2421 | try |
---|
| 2422 | { |
---|
| 2423 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
---|
| 2424 | SuperClassWriter::addAttribute("long_name", long_name , &axis_name); |
---|
| 2425 | SuperClassWriter::addAttribute("calendar", calendar , &axis_name); |
---|
| 2426 | SuperClassWriter::addAttribute("units", units , &axis_name); |
---|
| 2427 | SuperClassWriter::addAttribute("time_origin", time_origin , &axis_name); |
---|
| 2428 | SuperClassWriter::addAttribute("bounds", time_bounds , &axis_name); |
---|
| 2429 | } |
---|
| 2430 | catch (CNetCdfException& e) |
---|
| 2431 | { |
---|
| 2432 | StdString msg("On writing time axis Attribute: "); |
---|
| 2433 | msg.append("In the context : "); |
---|
| 2434 | CContext* context = CContext::getCurrent() ; |
---|
| 2435 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2436 | msg.append(e.what()); |
---|
| 2437 | ERROR("CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, \ |
---|
[613] | 2438 | const StdString & calendar,\ |
---|
| 2439 | const StdString & units, \ |
---|
| 2440 | const StdString & time_origin, \ |
---|
| 2441 | const StdString & time_bounds, \ |
---|
| 2442 | const StdString & standard_name, \ |
---|
| 2443 | const StdString & long_name)", << msg); |
---|
[498] | 2444 | } |
---|
[219] | 2445 | } |
---|
[488] | 2446 | |
---|
[219] | 2447 | //--------------------------------------------------------------- |
---|
| 2448 | |
---|
| 2449 | void CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, |
---|
| 2450 | const StdString & axis, |
---|
| 2451 | const StdString & standard_name, |
---|
| 2452 | const StdString & long_name, |
---|
| 2453 | const StdString & units, |
---|
| 2454 | const StdString & nav_model) |
---|
| 2455 | { |
---|
[498] | 2456 | try |
---|
| 2457 | { |
---|
[613] | 2458 | if (!axis.empty()) |
---|
| 2459 | SuperClassWriter::addAttribute("axis" , axis , &axis_name); |
---|
| 2460 | |
---|
[498] | 2461 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
---|
| 2462 | SuperClassWriter::addAttribute("long_name" , long_name , &axis_name); |
---|
| 2463 | SuperClassWriter::addAttribute("units" , units , &axis_name); |
---|
[973] | 2464 | // SuperClassWriter::addAttribute("nav_model" , nav_model , &axis_name); |
---|
[498] | 2465 | } |
---|
| 2466 | catch (CNetCdfException& e) |
---|
| 2467 | { |
---|
| 2468 | StdString msg("On writing Axis Attribute: "); |
---|
| 2469 | msg.append("In the context : "); |
---|
| 2470 | CContext* context = CContext::getCurrent() ; |
---|
| 2471 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2472 | msg.append(e.what()); |
---|
| 2473 | ERROR("CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, \ |
---|
[613] | 2474 | const StdString & axis, \ |
---|
| 2475 | const StdString & standard_name, \ |
---|
| 2476 | const StdString & long_name, \ |
---|
| 2477 | const StdString & units, \ |
---|
| 2478 | const StdString & nav_model)", << msg); |
---|
[498] | 2479 | } |
---|
[219] | 2480 | } |
---|
| 2481 | |
---|
| 2482 | //--------------------------------------------------------------- |
---|
[488] | 2483 | |
---|
[219] | 2484 | void CNc4DataOutput::writeLocalAttributes |
---|
| 2485 | (int ibegin, int ni, int jbegin, int nj, StdString domid) |
---|
| 2486 | { |
---|
[498] | 2487 | try |
---|
| 2488 | { |
---|
[318] | 2489 | SuperClassWriter::addAttribute(StdString("ibegin").append(domid), ibegin); |
---|
| 2490 | SuperClassWriter::addAttribute(StdString("ni" ).append(domid), ni); |
---|
| 2491 | SuperClassWriter::addAttribute(StdString("jbegin").append(domid), jbegin); |
---|
| 2492 | SuperClassWriter::addAttribute(StdString("nj" ).append(domid), nj); |
---|
[498] | 2493 | } |
---|
| 2494 | catch (CNetCdfException& e) |
---|
| 2495 | { |
---|
| 2496 | StdString msg("On writing Local Attributes: "); |
---|
| 2497 | msg.append("In the context : "); |
---|
| 2498 | CContext* context = CContext::getCurrent() ; |
---|
| 2499 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2500 | msg.append(e.what()); |
---|
| 2501 | ERROR("CNc4DataOutput::writeLocalAttributes \ |
---|
| 2502 | (int ibegin, int ni, int jbegin, int nj, StdString domid)", << msg); |
---|
| 2503 | } |
---|
| 2504 | |
---|
[219] | 2505 | } |
---|
| 2506 | |
---|
[628] | 2507 | void CNc4DataOutput::writeLocalAttributes_IOIPSL(const StdString& dimXid, const StdString& dimYid, |
---|
| 2508 | int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size) |
---|
[391] | 2509 | { |
---|
| 2510 | CArray<int,1> array(2) ; |
---|
| 2511 | |
---|
[498] | 2512 | try |
---|
| 2513 | { |
---|
| 2514 | SuperClassWriter::addAttribute("DOMAIN_number_total",size ) ; |
---|
| 2515 | SuperClassWriter::addAttribute("DOMAIN_number", rank) ; |
---|
[629] | 2516 | array = SuperClassWriter::getDimension(dimXid) + 1, SuperClassWriter::getDimension(dimYid) + 1; |
---|
[498] | 2517 | SuperClassWriter::addAttribute("DOMAIN_dimensions_ids",array) ; |
---|
| 2518 | array=ni_glo,nj_glo ; |
---|
| 2519 | SuperClassWriter::addAttribute("DOMAIN_size_global", array) ; |
---|
| 2520 | array=ni,nj ; |
---|
| 2521 | SuperClassWriter::addAttribute("DOMAIN_size_local", array) ; |
---|
[819] | 2522 | array=ibegin+1,jbegin+1 ; |
---|
[498] | 2523 | SuperClassWriter::addAttribute("DOMAIN_position_first", array) ; |
---|
[819] | 2524 | array=ibegin+ni-1+1,jbegin+nj-1+1 ; |
---|
[498] | 2525 | SuperClassWriter::addAttribute("DOMAIN_position_last",array) ; |
---|
| 2526 | array=0,0 ; |
---|
| 2527 | SuperClassWriter::addAttribute("DOMAIN_halo_size_start", array) ; |
---|
| 2528 | SuperClassWriter::addAttribute("DOMAIN_halo_size_end", array); |
---|
| 2529 | SuperClassWriter::addAttribute("DOMAIN_type",string("box")) ; |
---|
| 2530 | /* |
---|
| 2531 | SuperClassWriter::addAttribute("DOMAIN_DIM_N001",string("x")) ; |
---|
| 2532 | SuperClassWriter::addAttribute("DOMAIN_DIM_N002",string("y")) ; |
---|
| 2533 | SuperClassWriter::addAttribute("DOMAIN_DIM_N003",string("axis_A")) ; |
---|
| 2534 | SuperClassWriter::addAttribute("DOMAIN_DIM_N004",string("time_counter")) ; |
---|
| 2535 | */ |
---|
| 2536 | } |
---|
| 2537 | catch (CNetCdfException& e) |
---|
| 2538 | { |
---|
[628] | 2539 | StdString msg("On writing Local Attributes IOIPSL \n"); |
---|
[498] | 2540 | msg.append("In the context : "); |
---|
| 2541 | CContext* context = CContext::getCurrent() ; |
---|
| 2542 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2543 | msg.append(e.what()); |
---|
| 2544 | ERROR("CNc4DataOutput::writeLocalAttributes_IOIPSL \ |
---|
| 2545 | (int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)", << msg); |
---|
| 2546 | } |
---|
[391] | 2547 | } |
---|
[219] | 2548 | //--------------------------------------------------------------- |
---|
| 2549 | |
---|
| 2550 | void CNc4DataOutput:: writeFileAttributes(const StdString & name, |
---|
| 2551 | const StdString & description, |
---|
| 2552 | const StdString & conventions, |
---|
| 2553 | const StdString & production, |
---|
| 2554 | const StdString & timeStamp) |
---|
| 2555 | { |
---|
[498] | 2556 | try |
---|
| 2557 | { |
---|
| 2558 | SuperClassWriter::addAttribute("name" , name); |
---|
| 2559 | SuperClassWriter::addAttribute("description", description); |
---|
[613] | 2560 | SuperClassWriter::addAttribute("title" , description); |
---|
| 2561 | SuperClassWriter::addAttribute("Conventions", conventions); |
---|
[989] | 2562 | // SuperClassWriter::addAttribute("production" , production); |
---|
[498] | 2563 | SuperClassWriter::addAttribute("timeStamp" , timeStamp); |
---|
| 2564 | } |
---|
| 2565 | catch (CNetCdfException& e) |
---|
| 2566 | { |
---|
| 2567 | StdString msg("On writing File Attributes \n "); |
---|
| 2568 | msg.append("In the context : "); |
---|
| 2569 | CContext* context = CContext::getCurrent() ; |
---|
| 2570 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2571 | msg.append(e.what()); |
---|
| 2572 | ERROR("CNc4DataOutput:: writeFileAttributes(const StdString & name, \ |
---|
| 2573 | const StdString & description, \ |
---|
| 2574 | const StdString & conventions, \ |
---|
| 2575 | const StdString & production, \ |
---|
| 2576 | const StdString & timeStamp)", << msg); |
---|
| 2577 | } |
---|
[219] | 2578 | } |
---|
| 2579 | |
---|
| 2580 | //--------------------------------------------------------------- |
---|
| 2581 | |
---|
| 2582 | void CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, |
---|
| 2583 | int data_dim, |
---|
| 2584 | int data_ni, |
---|
| 2585 | int data_nj, |
---|
| 2586 | int data_ibegin, |
---|
| 2587 | int data_jbegin) |
---|
| 2588 | { |
---|
[498] | 2589 | try |
---|
| 2590 | { |
---|
| 2591 | SuperClassWriter::addAttribute("data_dim" , data_dim , &mask_name); |
---|
| 2592 | SuperClassWriter::addAttribute("data_ni" , data_ni , &mask_name); |
---|
| 2593 | SuperClassWriter::addAttribute("data_nj" , data_nj , &mask_name); |
---|
| 2594 | SuperClassWriter::addAttribute("data_ibegin", data_ibegin, &mask_name); |
---|
| 2595 | SuperClassWriter::addAttribute("data_jbegin", data_jbegin, &mask_name); |
---|
| 2596 | } |
---|
| 2597 | catch (CNetCdfException& e) |
---|
| 2598 | { |
---|
| 2599 | StdString msg("On writing Mask Attributes \n "); |
---|
| 2600 | msg.append("In the context : "); |
---|
| 2601 | CContext* context = CContext::getCurrent() ; |
---|
| 2602 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2603 | msg.append(e.what()); |
---|
| 2604 | ERROR("CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, \ |
---|
| 2605 | int data_dim, \ |
---|
| 2606 | int data_ni, \ |
---|
| 2607 | int data_nj, \ |
---|
| 2608 | int data_ibegin, \ |
---|
| 2609 | int data_jbegin)", << msg); |
---|
| 2610 | } |
---|
[219] | 2611 | } |
---|
| 2612 | |
---|
| 2613 | ///-------------------------------------------------------------- |
---|
| 2614 | |
---|
[1044] | 2615 | StdSize CNc4DataOutput::getRecordFromTime(Time time, double factorUnit) |
---|
[707] | 2616 | { |
---|
| 2617 | std::map<Time, StdSize>::const_iterator it = timeToRecordCache.find(time); |
---|
| 2618 | if (it == timeToRecordCache.end()) |
---|
| 2619 | { |
---|
[802] | 2620 | StdString timeAxisBoundsId(getTimeCounterName() + "_bounds"); |
---|
[707] | 2621 | if (!SuperClassWriter::varExist(timeAxisBoundsId)) |
---|
| 2622 | timeAxisBoundsId = "time_instant_bounds"; |
---|
| 2623 | |
---|
| 2624 | CArray<double,2> timeAxisBounds; |
---|
| 2625 | SuperClassWriter::getTimeAxisBounds(timeAxisBounds, timeAxisBoundsId, isCollective); |
---|
[1044] | 2626 | timeAxisBounds*=factorUnit ; |
---|
| 2627 | |
---|
[707] | 2628 | StdSize record = 0; |
---|
| 2629 | double dtime(time); |
---|
| 2630 | for (int n = timeAxisBounds.extent(1) - 1; n >= 0; n--) |
---|
| 2631 | { |
---|
| 2632 | if (timeAxisBounds(1, n) < dtime) |
---|
| 2633 | { |
---|
| 2634 | record = n + 1; |
---|
| 2635 | break; |
---|
| 2636 | } |
---|
| 2637 | } |
---|
| 2638 | it = timeToRecordCache.insert(std::make_pair(time, record)).first; |
---|
| 2639 | } |
---|
| 2640 | return it->second; |
---|
| 2641 | } |
---|
[774] | 2642 | |
---|
| 2643 | ///-------------------------------------------------------------- |
---|
| 2644 | |
---|
| 2645 | bool CNc4DataOutput::isWrittenDomain(const std::string& domainName) const |
---|
| 2646 | { |
---|
| 2647 | return (this->writtenDomains.find(domainName) != this->writtenDomains.end()); |
---|
| 2648 | } |
---|
| 2649 | |
---|
| 2650 | bool CNc4DataOutput::isWrittenCompressedDomain(const std::string& domainName) const |
---|
| 2651 | { |
---|
| 2652 | return (this->writtenCompressedDomains.find(domainName) != this->writtenCompressedDomains.end()); |
---|
| 2653 | } |
---|
| 2654 | |
---|
| 2655 | bool CNc4DataOutput::isWrittenAxis(const std::string& axisName) const |
---|
| 2656 | { |
---|
| 2657 | return (this->writtenAxis.find(axisName) != this->writtenAxis.end()); |
---|
| 2658 | } |
---|
| 2659 | |
---|
| 2660 | bool CNc4DataOutput::isWrittenCompressedAxis(const std::string& axisName) const |
---|
| 2661 | { |
---|
| 2662 | return (this->writtenCompressedAxis.find(axisName) != this->writtenCompressedAxis.end()); |
---|
| 2663 | } |
---|
| 2664 | |
---|
[887] | 2665 | bool CNc4DataOutput::isWrittenScalar(const std::string& scalarName) const |
---|
| 2666 | { |
---|
| 2667 | return (this->writtenScalar.find(scalarName) != this->writtenScalar.end()); |
---|
| 2668 | } |
---|
| 2669 | |
---|
[774] | 2670 | void CNc4DataOutput::setWrittenDomain(const std::string& domainName) |
---|
| 2671 | { |
---|
| 2672 | this->writtenDomains.insert(domainName); |
---|
| 2673 | } |
---|
| 2674 | |
---|
| 2675 | void CNc4DataOutput::setWrittenCompressedDomain(const std::string& domainName) |
---|
| 2676 | { |
---|
| 2677 | this->writtenCompressedDomains.insert(domainName); |
---|
| 2678 | } |
---|
| 2679 | |
---|
| 2680 | void CNc4DataOutput::setWrittenAxis(const std::string& axisName) |
---|
| 2681 | { |
---|
| 2682 | this->writtenAxis.insert(axisName); |
---|
| 2683 | } |
---|
| 2684 | |
---|
| 2685 | void CNc4DataOutput::setWrittenCompressedAxis(const std::string& axisName) |
---|
| 2686 | { |
---|
| 2687 | this->writtenCompressedAxis.insert(axisName); |
---|
| 2688 | } |
---|
[887] | 2689 | |
---|
| 2690 | void CNc4DataOutput::setWrittenScalar(const std::string& scalarName) |
---|
| 2691 | { |
---|
| 2692 | this->writtenScalar.insert(scalarName); |
---|
| 2693 | } |
---|
[335] | 2694 | } // namespace xios |
---|