[266] | 1 | |
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[219] | 2 | #include "nc4_data_output.hpp" |
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| 3 | |
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| 4 | #include <boost/lexical_cast.hpp> |
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[352] | 5 | #include "attribute_template.hpp" |
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| 6 | #include "group_template.hpp" |
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[219] | 7 | |
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| 8 | #include "file.hpp" |
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| 9 | #include "calendar.hpp" |
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[278] | 10 | #include "context.hpp" |
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[300] | 11 | #include "context_server.hpp" |
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[498] | 12 | #include "netCdfException.hpp" |
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| 13 | #include "exception.hpp" |
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[219] | 14 | |
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[335] | 15 | namespace xios |
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[219] | 16 | { |
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| 17 | /// ////////////////////// Définitions ////////////////////// /// |
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| 18 | CNc4DataOutput::CNc4DataOutput |
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| 19 | (const StdString & filename, bool exist) |
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| 20 | : SuperClass() |
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| 21 | , SuperClassWriter(filename, exist) |
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| 22 | , filename(filename) |
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| 23 | { |
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| 24 | StdString timeid = StdString("time_counter"); |
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| 25 | SuperClass::type = MULTI_FILE; |
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[391] | 26 | // if (!exist) |
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| 27 | // SuperClassWriter::addDimension(timeid); |
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[219] | 28 | } |
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| 29 | |
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| 30 | CNc4DataOutput::CNc4DataOutput |
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[517] | 31 | (const StdString & filename, bool exist, bool useClassicFormat, |
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| 32 | MPI_Comm comm_file,bool multifile, bool isCollective) |
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[219] | 33 | : SuperClass() |
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[517] | 34 | , SuperClassWriter(filename, exist, useClassicFormat, &comm_file, multifile) |
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[379] | 35 | , comm_file(comm_file) |
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[219] | 36 | , filename(filename) |
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[335] | 37 | , isCollective(isCollective) |
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[219] | 38 | { |
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| 39 | StdString timeid = StdString("time_counter"); |
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| 40 | |
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[286] | 41 | SuperClass::type = (multifile) ? MULTI_FILE : ONE_FILE; |
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[488] | 42 | |
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[391] | 43 | // if (!exist) |
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| 44 | // SuperClassWriter::addDimension(timeid); |
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[219] | 45 | } |
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| 46 | |
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[286] | 47 | |
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[219] | 48 | CNc4DataOutput::~CNc4DataOutput(void) |
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| 49 | { /* Ne rien faire de plus */ } |
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| 50 | |
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| 51 | ///-------------------------------------------------------------- |
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| 52 | |
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| 53 | const StdString & CNc4DataOutput::getFileName(void) const |
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| 54 | { |
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| 55 | return (this->filename); |
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| 56 | } |
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| 57 | |
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| 58 | //--------------------------------------------------------------- |
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| 59 | |
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[347] | 60 | void CNc4DataOutput::writeDomain_(CDomain* domain) |
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[219] | 61 | { |
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[449] | 62 | if (domain->type == CDomain::type_attr::unstructured) |
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| 63 | { |
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| 64 | writeUnstructuredDomain(domain) ; |
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| 65 | return ; |
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| 66 | } |
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[488] | 67 | |
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[347] | 68 | CContext* context = CContext::getCurrent() ; |
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[300] | 69 | CContextServer* server=context->server ; |
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[488] | 70 | |
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[219] | 71 | if (domain->IsWritten(this->filename)) return; |
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| 72 | domain->checkAttributes(); |
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[488] | 73 | |
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| 74 | if (domain->isEmpty()) |
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[300] | 75 | if (SuperClass::type==MULTI_FILE) return ; |
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[219] | 76 | |
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| 77 | std::vector<StdString> dim0, dim1; |
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| 78 | StdString domid = (!domain->name.isEmpty()) |
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| 79 | ? domain->name.getValue() : domain->getId(); |
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[318] | 80 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
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[449] | 81 | |
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| 82 | |
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| 83 | StdString dimXid, dimYid ; |
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[488] | 84 | |
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[664] | 85 | bool isRegularDomain = (domain->type == CDomain::type_attr::rectilinear); |
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[449] | 86 | switch (domain->type) |
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[433] | 87 | { |
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[449] | 88 | case CDomain::type_attr::curvilinear : |
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| 89 | dimXid = StdString("x").append(appendDomid); |
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| 90 | dimYid = StdString("y").append(appendDomid); |
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| 91 | break ; |
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[664] | 92 | case CDomain::type_attr::rectilinear : |
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[449] | 93 | dimXid = StdString("lon").append(appendDomid); |
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| 94 | dimYid = StdString("lat").append(appendDomid); |
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| 95 | break; |
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[488] | 96 | } |
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| 97 | |
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[617] | 98 | StdString dimVertId = StdString("nvertex").append(appendDomid); |
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| 99 | |
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[449] | 100 | string lonid,latid,bounds_lonid,bounds_latid ; |
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[611] | 101 | string areaId = "area" + appendDomid; |
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[391] | 102 | /* |
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[300] | 103 | StdString lonid_loc = (server->intraCommSize > 1) |
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[318] | 104 | ? StdString("lon").append(appendDomid).append("_local") |
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[278] | 105 | : lonid; |
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[300] | 106 | StdString latid_loc = (server->intraCommSize > 1) |
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[318] | 107 | ? StdString("lat").append(appendDomid).append("_local") |
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[278] | 108 | : latid; |
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[391] | 109 | */ |
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[219] | 110 | |
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[498] | 111 | try |
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[219] | 112 | { |
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[498] | 113 | switch (SuperClass::type) |
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| 114 | { |
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| 115 | case (MULTI_FILE) : |
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| 116 | { |
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| 117 | // if (domain->isEmpty()) return; |
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[488] | 118 | |
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[498] | 119 | if (server->intraCommSize > 1) |
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| 120 | { |
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| 121 | // SuperClassWriter::addDimension(lonid, domain->zoom_ni.getValue()); |
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| 122 | // SuperClassWriter::addDimension(latid, domain->zoom_nj.getValue()); |
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| 123 | } |
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[286] | 124 | |
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[498] | 125 | switch (domain->type) |
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| 126 | { |
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| 127 | case CDomain::type_attr::curvilinear : |
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| 128 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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| 129 | lonid = StdString("nav_lon").append(appendDomid); |
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| 130 | latid = StdString("nav_lat").append(appendDomid); |
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| 131 | break ; |
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[664] | 132 | case CDomain::type_attr::rectilinear : |
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[498] | 133 | lonid = StdString("lon").append(appendDomid); |
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| 134 | latid = StdString("lat").append(appendDomid); |
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| 135 | dim0.push_back(dimYid); |
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| 136 | dim1.push_back(dimXid); |
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| 137 | break; |
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| 138 | } |
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[488] | 139 | |
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[617] | 140 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
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| 141 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
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| 142 | |
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[616] | 143 | SuperClassWriter::addDimension(dimXid, domain->zoom_ni_srv); |
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| 144 | SuperClassWriter::addDimension(dimYid, domain->zoom_nj_srv); |
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[488] | 145 | |
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[617] | 146 | if (domain->hasBounds) |
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| 147 | SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
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| 148 | |
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[498] | 149 | if (server->intraCommSize > 1) |
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| 150 | { |
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[616] | 151 | this->writeLocalAttributes(domain->zoom_ibegin_srv, |
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| 152 | domain->zoom_ni_srv, |
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| 153 | domain->zoom_jbegin_srv, |
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| 154 | domain->zoom_nj_srv, |
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| 155 | appendDomid); |
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[488] | 156 | |
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[628] | 157 | if (singleDomain) |
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| 158 | this->writeLocalAttributes_IOIPSL(dimXid, dimYid, |
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| 159 | domain->zoom_ibegin_srv, |
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| 160 | domain->zoom_ni_srv, |
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| 161 | domain->zoom_jbegin_srv, |
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| 162 | domain->zoom_nj_srv, |
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| 163 | domain->ni_glo,domain->nj_glo, |
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| 164 | server->intraCommRank,server->intraCommSize); |
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[449] | 165 | } |
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[488] | 166 | |
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[665] | 167 | if (domain->hasLonLat) |
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[498] | 168 | { |
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[665] | 169 | switch (domain->type) |
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| 170 | { |
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| 171 | case CDomain::type_attr::curvilinear : |
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| 172 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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| 173 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
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| 174 | break ; |
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| 175 | case CDomain::type_attr::rectilinear : |
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| 176 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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| 177 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim1); |
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| 178 | break ; |
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| 179 | } |
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[488] | 180 | |
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[665] | 181 | this->writeAxisAttributes(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid); |
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| 182 | this->writeAxisAttributes(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid); |
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[219] | 183 | |
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[665] | 184 | if (domain->hasBounds) |
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| 185 | { |
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| 186 | SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid); |
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| 187 | SuperClassWriter::addAttribute("bounds", bounds_latid, &latid); |
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[617] | 188 | |
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[665] | 189 | dim0.clear(); |
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| 190 | dim0.push_back(dimYid); |
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| 191 | dim0.push_back(dimXid); |
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| 192 | dim0.push_back(dimVertId); |
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| 193 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
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| 194 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
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| 195 | } |
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[617] | 196 | } |
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| 197 | |
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[498] | 198 | dim0.clear(); |
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[616] | 199 | dim0.push_back(dimYid); |
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[498] | 200 | dim0.push_back(dimXid); |
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[219] | 201 | |
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| 202 | |
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[498] | 203 | // supress mask if (server->intraCommSize > 1) |
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| 204 | // supress mask { |
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| 205 | // supress mask SuperClassWriter::addVariable(maskid, NC_INT, dim0); |
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| 206 | // supress mask |
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| 207 | // supress mask this->writeMaskAttributes(maskid, |
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| 208 | // supress mask domain->data_dim.getValue()/*, |
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| 209 | // supress mask domain->data_ni.getValue(), |
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| 210 | // supress mask domain->data_nj.getValue(), |
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| 211 | // supress mask domain->data_ibegin.getValue(), |
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| 212 | // supress mask domain->data_jbegin.getValue()*/); |
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| 213 | // supress mask } |
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[488] | 214 | |
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[498] | 215 | //SuperClassWriter::setDefaultValue(maskid, &dvm); |
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[219] | 216 | |
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[611] | 217 | if (domain->hasArea) |
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| 218 | { |
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| 219 | SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0); |
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[614] | 220 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
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[611] | 221 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
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| 222 | } |
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| 223 | |
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[498] | 224 | SuperClassWriter::definition_end(); |
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[449] | 225 | |
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[665] | 226 | if (domain->hasLonLat) |
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[498] | 227 | { |
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[665] | 228 | switch (domain->type) |
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| 229 | { |
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| 230 | case CDomain::type_attr::curvilinear : |
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| 231 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0); |
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| 232 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0); |
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| 233 | break; |
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| 234 | case CDomain::type_attr::rectilinear : |
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| 235 | CArray<double,1> lat = domain->latvalue_srv(Range(fromStart,toEnd,domain->zoom_ni_srv)) ; |
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| 236 | SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0); |
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| 237 | CArray<double,1> lon=domain->lonvalue_srv(Range(0,domain->zoom_ni_srv-1)) ; |
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| 238 | SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0); |
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| 239 | break; |
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| 240 | } |
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[611] | 241 | |
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[665] | 242 | if (domain->hasBounds) |
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| 243 | { |
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| 244 | SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0); |
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| 245 | SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0); |
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| 246 | } |
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[617] | 247 | } |
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| 248 | |
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[611] | 249 | if (domain->hasArea) |
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| 250 | SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0); |
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| 251 | |
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[498] | 252 | SuperClassWriter::definition_start(); |
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[219] | 253 | |
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[498] | 254 | break; |
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| 255 | } |
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| 256 | case (ONE_FILE) : |
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| 257 | { |
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[631] | 258 | SuperClassWriter::addDimension(dimXid, domain->global_zoom_ni); |
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| 259 | SuperClassWriter::addDimension(dimYid, domain->global_zoom_nj); |
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[286] | 260 | |
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[617] | 261 | if (domain->hasBounds) |
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| 262 | SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
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| 263 | |
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[665] | 264 | if (domain->hasLonLat) |
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[498] | 265 | { |
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[665] | 266 | switch (domain->type) |
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| 267 | { |
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| 268 | case CDomain::type_attr::curvilinear : |
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| 269 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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| 270 | lonid = StdString("nav_lon").append(appendDomid); |
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| 271 | latid = StdString("nav_lat").append(appendDomid); |
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| 272 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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| 273 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
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| 274 | break; |
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[449] | 275 | |
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[665] | 276 | case CDomain::type_attr::rectilinear : |
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| 277 | dim0.push_back(dimYid); |
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| 278 | dim1.push_back(dimXid); |
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| 279 | lonid = StdString("lon").append(appendDomid); |
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| 280 | latid = StdString("lat").append(appendDomid); |
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| 281 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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| 282 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim1); |
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| 283 | break; |
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| 284 | } |
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| 285 | |
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| 286 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
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| 287 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
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| 288 | |
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| 289 | this->writeAxisAttributes |
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| 290 | (lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid); |
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| 291 | this->writeAxisAttributes |
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| 292 | (latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid); |
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| 293 | |
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| 294 | if (domain->hasBounds) |
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| 295 | { |
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| 296 | SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid); |
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| 297 | SuperClassWriter::addAttribute("bounds", bounds_latid, &latid); |
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| 298 | |
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| 299 | dim0.clear(); |
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[498] | 300 | dim0.push_back(dimYid); |
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[665] | 301 | dim0.push_back(dimXid); |
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| 302 | dim0.push_back(dimVertId); |
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| 303 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
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| 304 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
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| 305 | } |
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[498] | 306 | } |
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[611] | 307 | |
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| 308 | if (domain->hasArea) |
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| 309 | { |
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| 310 | dim0.clear(); |
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| 311 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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| 312 | SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0); |
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[614] | 313 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
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[611] | 314 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
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| 315 | dim0.clear(); |
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| 316 | } |
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| 317 | |
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| 318 | SuperClassWriter::definition_end(); |
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[286] | 319 | |
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[498] | 320 | switch (domain->type) |
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[384] | 321 | { |
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[498] | 322 | case CDomain::type_attr::curvilinear : |
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[449] | 323 | { |
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[498] | 324 | std::vector<StdSize> start(2) ; |
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| 325 | std::vector<StdSize> count(2) ; |
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| 326 | if (domain->isEmpty()) |
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| 327 | { |
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[611] | 328 | start[0]=0 ; start[1]=0 ; |
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[498] | 329 | count[0]=0 ; count[1]=0 ; |
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| 330 | } |
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| 331 | else |
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| 332 | { |
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[631] | 333 | start[1]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
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| 334 | start[0]=domain->zoom_jbegin_srv-domain->global_zoom_jbegin; |
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[498] | 335 | count[1]=domain->zoom_ni_srv ; count[0]=domain->zoom_nj_srv ; |
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| 336 | } |
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[488] | 337 | |
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[665] | 338 | if (domain->hasLonLat) |
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| 339 | { |
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| 340 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count); |
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| 341 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count); |
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| 342 | } |
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[498] | 343 | break; |
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| 344 | } |
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[664] | 345 | case CDomain::type_attr::rectilinear : |
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[449] | 346 | { |
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[665] | 347 | if (domain->hasLonLat) |
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[498] | 348 | { |
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[665] | 349 | std::vector<StdSize> start(1) ; |
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| 350 | std::vector<StdSize> count(1) ; |
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| 351 | if (domain->isEmpty()) |
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| 352 | { |
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| 353 | start[0]=0 ; |
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| 354 | count[0]=0 ; |
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| 355 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count); |
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| 356 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count); |
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[449] | 357 | |
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[665] | 358 | } |
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| 359 | else |
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| 360 | { |
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| 361 | start[0]=domain->zoom_jbegin_srv-domain->global_zoom_jbegin; |
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| 362 | count[0]=domain->zoom_nj_srv ; |
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| 363 | CArray<double,1> lat = domain->latvalue_srv(Range(fromStart,toEnd,domain->zoom_ni_srv)) ; |
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| 364 | SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0,&start,&count); |
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| 365 | |
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| 366 | start[0]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
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| 367 | count[0]=domain->zoom_ni_srv ; |
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| 368 | CArray<double,1> lon=domain->lonvalue_srv(Range(0,domain->zoom_ni_srv-1)) ; |
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| 369 | SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0,&start,&count); |
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| 370 | } |
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[498] | 371 | } |
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| 372 | break; |
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[449] | 373 | } |
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[384] | 374 | } |
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[611] | 375 | |
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[617] | 376 | if (domain->hasBounds) |
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| 377 | { |
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| 378 | std::vector<StdSize> start(3); |
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| 379 | std::vector<StdSize> count(3); |
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| 380 | if (domain->isEmpty()) |
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| 381 | { |
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| 382 | start[2] = start[1] = start[0] = 0; |
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| 383 | count[2] = count[1] = count[0] = 0; |
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| 384 | } |
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| 385 | else |
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| 386 | { |
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| 387 | start[2] = 0; |
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[631] | 388 | start[1] = domain->zoom_ibegin_srv - domain->global_zoom_ibegin; |
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| 389 | start[0] = domain->zoom_jbegin_srv - domain->global_zoom_jbegin; |
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[617] | 390 | count[2] = domain->nvertex; |
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| 391 | count[1] = domain->zoom_ni_srv; |
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| 392 | count[0] = domain->zoom_nj_srv; |
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| 393 | } |
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[625] | 394 | |
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[617] | 395 | SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0, &start, &count); |
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| 396 | SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0, &start, &count); |
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| 397 | } |
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| 398 | |
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[611] | 399 | if (domain->hasArea) |
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| 400 | { |
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| 401 | std::vector<StdSize> start(2); |
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| 402 | std::vector<StdSize> count(2); |
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| 403 | |
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| 404 | if (domain->isEmpty()) |
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| 405 | { |
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| 406 | start[0] = 0; start[1] = 0; |
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| 407 | count[0] = 0; count[1] = 0; |
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| 408 | } |
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| 409 | else |
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| 410 | { |
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[631] | 411 | start[1] = domain->zoom_ibegin_srv - domain->global_zoom_ibegin; |
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| 412 | start[0] = domain->zoom_jbegin_srv - domain->global_zoom_jbegin; |
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[611] | 413 | count[1] = domain->zoom_ni_srv; |
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| 414 | count[0] = domain->zoom_nj_srv; |
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| 415 | } |
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| 416 | |
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| 417 | SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0, &start, &count); |
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| 418 | } |
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| 419 | |
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[498] | 420 | SuperClassWriter::definition_start(); |
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| 421 | break; |
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| 422 | } |
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| 423 | default : |
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| 424 | ERROR("CNc4DataOutput::writeDomain(domain)", |
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| 425 | << "[ type = " << SuperClass::type << "]" |
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| 426 | << " not implemented yet !"); |
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| 427 | } |
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[449] | 428 | } |
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[498] | 429 | catch (CNetCdfException& e) |
---|
| 430 | { |
---|
| 431 | StdString msg("On writing the domain : "); |
---|
| 432 | msg.append(domid); msg.append("\n"); |
---|
| 433 | msg.append("In the context : "); |
---|
| 434 | msg.append(context->getId()); msg.append("\n"); |
---|
| 435 | msg.append(e.what()); |
---|
| 436 | ERROR("CNc4DataOutput::writeDomain_(CDomain* domain)", << msg); |
---|
| 437 | } |
---|
| 438 | |
---|
[449] | 439 | domain->addRelFile(this->filename); |
---|
| 440 | } |
---|
| 441 | |
---|
| 442 | void CNc4DataOutput::writeUnstructuredDomain(CDomain* domain) |
---|
| 443 | { |
---|
| 444 | CContext* context = CContext::getCurrent() ; |
---|
| 445 | CContextServer* server=context->server ; |
---|
[488] | 446 | |
---|
[449] | 447 | if (domain->IsWritten(this->filename)) return; |
---|
| 448 | domain->checkAttributes(); |
---|
[488] | 449 | |
---|
| 450 | if (domain->isEmpty()) |
---|
[449] | 451 | if (SuperClass::type==MULTI_FILE) return ; |
---|
| 452 | |
---|
| 453 | std::vector<StdString> dim0, dim1; |
---|
| 454 | StdString domid = (!domain->name.isEmpty()) |
---|
| 455 | ? domain->name.getValue() : domain->getId(); |
---|
| 456 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
---|
| 457 | |
---|
| 458 | |
---|
| 459 | StdString dimXid = StdString("cell").append(appendDomid); |
---|
| 460 | StdString dimVertId = StdString("nvertex").append(appendDomid); |
---|
[488] | 461 | |
---|
[449] | 462 | string lonid,latid,bounds_lonid,bounds_latid ; |
---|
[611] | 463 | string areaId = "area" + appendDomid; |
---|
[449] | 464 | |
---|
[498] | 465 | try |
---|
[449] | 466 | { |
---|
[498] | 467 | switch (SuperClass::type) |
---|
| 468 | { |
---|
| 469 | case (MULTI_FILE) : |
---|
| 470 | { |
---|
| 471 | dim0.push_back(dimXid); |
---|
[657] | 472 | SuperClassWriter::addDimension(dimXid, domain->zoom_ni_srv); |
---|
[488] | 473 | |
---|
[665] | 474 | lonid = StdString("lon").append(appendDomid); |
---|
| 475 | latid = StdString("lat").append(appendDomid); |
---|
[498] | 476 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
---|
| 477 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
---|
[665] | 478 | if (domain->hasLonLat) |
---|
| 479 | { |
---|
| 480 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
---|
| 481 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
---|
| 482 | this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid); |
---|
| 483 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid); |
---|
| 484 | this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid); |
---|
| 485 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid); |
---|
| 486 | if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
---|
| 487 | } |
---|
[488] | 488 | |
---|
[498] | 489 | dim0.clear(); |
---|
| 490 | if (domain->hasBounds) |
---|
| 491 | { |
---|
| 492 | dim0.push_back(dimXid); |
---|
| 493 | dim0.push_back(dimVertId); |
---|
| 494 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
---|
| 495 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
---|
| 496 | } |
---|
| 497 | |
---|
| 498 | dim0.clear(); |
---|
[449] | 499 | dim0.push_back(dimXid); |
---|
[611] | 500 | if (domain->hasArea) |
---|
| 501 | { |
---|
| 502 | SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0); |
---|
[614] | 503 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
---|
[611] | 504 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
---|
| 505 | } |
---|
| 506 | |
---|
[498] | 507 | SuperClassWriter::definition_end(); |
---|
[449] | 508 | |
---|
[665] | 509 | if (domain->hasLonLat) |
---|
[498] | 510 | { |
---|
[665] | 511 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0); |
---|
| 512 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0); |
---|
| 513 | if (domain->hasBounds) |
---|
| 514 | { |
---|
| 515 | SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0); |
---|
| 516 | SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0); |
---|
| 517 | } |
---|
[498] | 518 | } |
---|
[611] | 519 | |
---|
| 520 | if (domain->hasArea) |
---|
| 521 | SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0); |
---|
| 522 | |
---|
[498] | 523 | SuperClassWriter::definition_start(); |
---|
| 524 | break ; |
---|
| 525 | } |
---|
[488] | 526 | |
---|
[498] | 527 | case (ONE_FILE) : |
---|
| 528 | { |
---|
| 529 | lonid = StdString("lon").append(appendDomid); |
---|
| 530 | latid = StdString("lat").append(appendDomid); |
---|
| 531 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
---|
| 532 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
---|
| 533 | dim0.push_back(dimXid); |
---|
| 534 | SuperClassWriter::addDimension(dimXid, domain->nj_glo); |
---|
[665] | 535 | if (domain->hasLonLat) |
---|
| 536 | { |
---|
| 537 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
---|
| 538 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
---|
| 539 | |
---|
| 540 | this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid); |
---|
| 541 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid); |
---|
| 542 | this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid); |
---|
| 543 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid); |
---|
| 544 | if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
---|
| 545 | } |
---|
[498] | 546 | dim0.clear(); |
---|
[449] | 547 | |
---|
[498] | 548 | if (domain->hasBounds) |
---|
| 549 | { |
---|
| 550 | dim0.push_back(dimXid); |
---|
| 551 | dim0.push_back(dimVertId); |
---|
| 552 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
---|
| 553 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
---|
| 554 | } |
---|
[488] | 555 | |
---|
[611] | 556 | if (domain->hasArea) |
---|
| 557 | { |
---|
| 558 | dim0.clear(); |
---|
| 559 | dim0.push_back(dimXid); |
---|
| 560 | SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0); |
---|
[614] | 561 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
---|
[611] | 562 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
---|
| 563 | } |
---|
| 564 | |
---|
[498] | 565 | SuperClassWriter::definition_end(); |
---|
[488] | 566 | |
---|
[498] | 567 | std::vector<StdSize> start(1), startBounds(2) ; |
---|
| 568 | std::vector<StdSize> count(1), countBounds(2) ; |
---|
| 569 | if (domain->isEmpty()) |
---|
| 570 | { |
---|
| 571 | start[0]=0 ; |
---|
| 572 | count[0]=0 ; |
---|
| 573 | startBounds[1]=0 ; |
---|
| 574 | countBounds[1]=domain->nvertex ; |
---|
| 575 | startBounds[0]=0 ; |
---|
| 576 | countBounds[0]=0 ; |
---|
| 577 | } |
---|
| 578 | else |
---|
| 579 | { |
---|
[631] | 580 | start[0]=domain->zoom_jbegin_srv-domain->global_zoom_jbegin; |
---|
[498] | 581 | count[0]=domain->zoom_nj_srv ; |
---|
[631] | 582 | startBounds[0]=domain->zoom_jbegin_srv-domain->global_zoom_jbegin; |
---|
[498] | 583 | startBounds[1]=0 ; |
---|
| 584 | countBounds[0]=domain->zoom_nj_srv ; |
---|
| 585 | countBounds[1]=domain->nvertex ; |
---|
| 586 | } |
---|
[665] | 587 | |
---|
| 588 | if (domain->hasLonLat) |
---|
[498] | 589 | { |
---|
[665] | 590 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count); |
---|
| 591 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count); |
---|
| 592 | if (domain->hasBounds) |
---|
| 593 | { |
---|
| 594 | SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0,&startBounds,&countBounds); |
---|
| 595 | SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0,&startBounds,&countBounds); |
---|
| 596 | } |
---|
[498] | 597 | } |
---|
[488] | 598 | |
---|
[611] | 599 | if (domain->hasArea) |
---|
| 600 | SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0, &start, &count); |
---|
[488] | 601 | |
---|
[498] | 602 | SuperClassWriter::definition_start(); |
---|
[488] | 603 | |
---|
[498] | 604 | break; |
---|
| 605 | } |
---|
| 606 | default : |
---|
| 607 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
| 608 | << "[ type = " << SuperClass::type << "]" |
---|
| 609 | << " not implemented yet !"); |
---|
| 610 | } |
---|
[219] | 611 | } |
---|
[498] | 612 | catch (CNetCdfException& e) |
---|
| 613 | { |
---|
| 614 | StdString msg("On writing the domain : "); |
---|
| 615 | msg.append(domid); msg.append("\n"); |
---|
| 616 | msg.append("In the context : "); |
---|
| 617 | msg.append(context->getId()); msg.append("\n"); |
---|
| 618 | msg.append(e.what()); |
---|
| 619 | ERROR("CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)", << msg); |
---|
| 620 | } |
---|
[219] | 621 | domain->addRelFile(this->filename); |
---|
| 622 | } |
---|
| 623 | //-------------------------------------------------------------- |
---|
| 624 | |
---|
[347] | 625 | void CNc4DataOutput::writeAxis_(CAxis* axis) |
---|
[219] | 626 | { |
---|
[609] | 627 | if (axis->IsWritten(this->filename)) return; |
---|
| 628 | axis->checkAttributes(); |
---|
| 629 | int zoom_size_srv = axis->zoom_size_srv; |
---|
| 630 | int zoom_begin_srv = axis->zoom_begin_srv; |
---|
[633] | 631 | int zoom_size = (MULTI_FILE == SuperClass::type) ? zoom_size_srv |
---|
[623] | 632 | : axis->global_zoom_size; |
---|
[633] | 633 | int zoom_begin = (MULTI_FILE == SuperClass::type) ? zoom_begin_srv |
---|
[623] | 634 | : axis->global_zoom_begin; |
---|
[488] | 635 | |
---|
[633] | 636 | if ((0 == zoom_size_srv) && (MULTI_FILE == SuperClass::type)) return; |
---|
[498] | 637 | |
---|
[609] | 638 | std::vector<StdString> dims; |
---|
| 639 | StdString axisid = !axis->name.isEmpty() ? axis->name.getValue() : axis->getId(); |
---|
| 640 | try |
---|
| 641 | { |
---|
| 642 | SuperClassWriter::addDimension(axisid, zoom_size); |
---|
| 643 | dims.push_back(axisid); |
---|
[633] | 644 | SuperClassWriter::addVariable(axisid, NC_FLOAT, dims); |
---|
[219] | 645 | |
---|
[633] | 646 | if (!axis->name.isEmpty()) |
---|
| 647 | SuperClassWriter::addAttribute("name", axis->name.getValue(), &axisid); |
---|
[219] | 648 | |
---|
[633] | 649 | if (!axis->standard_name.isEmpty()) |
---|
| 650 | SuperClassWriter::addAttribute("standard_name", axis->standard_name.getValue(), &axisid); |
---|
[540] | 651 | |
---|
[633] | 652 | if (!axis->long_name.isEmpty()) |
---|
| 653 | SuperClassWriter::addAttribute("long_name", axis->long_name.getValue(), &axisid); |
---|
[219] | 654 | |
---|
[633] | 655 | if (!axis->unit.isEmpty()) |
---|
| 656 | SuperClassWriter::addAttribute("units", axis->unit.getValue(), &axisid); |
---|
[219] | 657 | |
---|
[633] | 658 | if (!axis->positive.isEmpty()) |
---|
| 659 | { |
---|
| 660 | SuperClassWriter::addAttribute("axis", string("Z"), &axisid); |
---|
| 661 | SuperClassWriter::addAttribute("positive", |
---|
| 662 | (axis->positive == CAxis::positive_attr::up) ? string("up") : string("down"), |
---|
| 663 | &axisid); |
---|
| 664 | } |
---|
[399] | 665 | |
---|
[633] | 666 | StdString axisBoundsId = axisid + "_bounds"; |
---|
| 667 | if (!axis->bounds.isEmpty()) |
---|
| 668 | { |
---|
| 669 | dims.push_back("axis_nbounds"); |
---|
| 670 | SuperClassWriter::addVariable(axisBoundsId, NC_FLOAT, dims); |
---|
| 671 | SuperClassWriter::addAttribute("bounds", axisBoundsId, &axisid); |
---|
| 672 | } |
---|
[488] | 673 | |
---|
[633] | 674 | SuperClassWriter::definition_end(); |
---|
| 675 | switch (SuperClass::type) |
---|
| 676 | { |
---|
| 677 | case MULTI_FILE: |
---|
| 678 | { |
---|
| 679 | CArray<double,1> axis_value(zoom_size_srv); |
---|
| 680 | for (int i = 0; i < zoom_size_srv; i++) axis_value(i) = axis->value_srv(i); |
---|
| 681 | SuperClassWriter::writeData(axis_value, axisid, isCollective, 0); |
---|
| 682 | |
---|
[609] | 683 | if (!axis->bounds.isEmpty()) |
---|
| 684 | { |
---|
[633] | 685 | CArray<double,2> axisBounds(2, zoom_size_srv); |
---|
| 686 | for (int i = 0; i < zoom_size_srv; i++) |
---|
| 687 | { |
---|
| 688 | axisBounds(0, i) = axis->bound_srv(i, 0); |
---|
| 689 | axisBounds(1, i) = axis->bound_srv(i, 1); |
---|
| 690 | } |
---|
| 691 | SuperClassWriter::writeData(axisBounds, axisBoundsId, isCollective, 0); |
---|
[609] | 692 | } |
---|
[488] | 693 | |
---|
[633] | 694 | SuperClassWriter::definition_start(); |
---|
[219] | 695 | |
---|
[633] | 696 | break; |
---|
| 697 | } |
---|
| 698 | case ONE_FILE: |
---|
| 699 | { |
---|
| 700 | CArray<double,1> axis_value(zoom_size_srv); |
---|
| 701 | axis_value = axis->value_srv; |
---|
[498] | 702 | |
---|
[633] | 703 | std::vector<StdSize> start(1) ; |
---|
| 704 | std::vector<StdSize> count(1) ; |
---|
| 705 | start[0] = zoom_begin_srv-axis->global_zoom_begin; |
---|
| 706 | count[0] = zoom_size_srv; |
---|
| 707 | SuperClassWriter::writeData(axis_value, axisid, isCollective, 0, &start, &count); |
---|
| 708 | |
---|
[609] | 709 | if (!axis->bounds.isEmpty()) |
---|
| 710 | { |
---|
[633] | 711 | CArray<double,2> axisBounds(2, zoom_size_srv); |
---|
| 712 | for (int i = 0; i < zoom_size_srv; ++i) |
---|
[609] | 713 | { |
---|
[633] | 714 | axisBounds(0, i+zoom_begin_srv) = axis->bound_srv(i, 0); |
---|
| 715 | axisBounds(1, i+zoom_begin_srv) = axis->bound_srv(i, 1); |
---|
[609] | 716 | } |
---|
[633] | 717 | SuperClassWriter::writeData(axisBounds, axisBoundsId, isCollective, 0, &start, &count); |
---|
[498] | 718 | } |
---|
[609] | 719 | |
---|
| 720 | SuperClassWriter::definition_start(); |
---|
| 721 | |
---|
| 722 | break; |
---|
| 723 | } |
---|
| 724 | default : |
---|
| 725 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
| 726 | << "[ type = " << SuperClass::type << "]" |
---|
| 727 | << " not implemented yet !"); |
---|
| 728 | } |
---|
| 729 | } |
---|
| 730 | catch (CNetCdfException& e) |
---|
| 731 | { |
---|
| 732 | StdString msg("On writing the axis : "); |
---|
| 733 | msg.append(axisid); msg.append("\n"); |
---|
| 734 | msg.append("In the context : "); |
---|
| 735 | CContext* context = CContext::getCurrent() ; |
---|
| 736 | msg.append(context->getId()); msg.append("\n"); |
---|
| 737 | msg.append(e.what()); |
---|
| 738 | ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)", << msg); |
---|
| 739 | } |
---|
| 740 | axis->addRelFile(this->filename); |
---|
[391] | 741 | } |
---|
[488] | 742 | |
---|
[676] | 743 | //-------------------------------------------------------------- |
---|
| 744 | |
---|
| 745 | void CNc4DataOutput::writeGridCompressed_(CGrid* grid) |
---|
| 746 | { |
---|
| 747 | if (grid->isScalarGrid() || grid->isWrittenCompressed(this->filename)) return; |
---|
| 748 | |
---|
| 749 | try |
---|
| 750 | { |
---|
| 751 | CArray<bool,1> axisDomainOrder = grid->axis_domain_order; |
---|
| 752 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 753 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
| 754 | int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0; |
---|
| 755 | |
---|
| 756 | std::vector<StdString> dims; |
---|
| 757 | |
---|
| 758 | if (grid->isCompressible()) |
---|
| 759 | { |
---|
| 760 | StdString varId = grid->getId() + "_points"; |
---|
| 761 | |
---|
| 762 | int nbIndexes = (SuperClass::type == MULTI_FILE) ? grid->getNumberWrittenIndexes() : grid->getTotalNumberWrittenIndexes(); |
---|
| 763 | SuperClassWriter::addDimension(varId, nbIndexes); |
---|
| 764 | |
---|
| 765 | dims.push_back(varId); |
---|
| 766 | SuperClassWriter::addVariable(varId, NC_INT, dims); |
---|
| 767 | |
---|
| 768 | StdOStringStream compress; |
---|
| 769 | for (int i = numElement - 1; i >= 0; --i) |
---|
| 770 | { |
---|
| 771 | if (axisDomainOrder(i)) |
---|
| 772 | { |
---|
| 773 | CDomain* domain = CDomain::get(domainList[domainList.size() - idxDomain - 1]); |
---|
| 774 | StdString domId = !domain->name.isEmpty() ? domain->name.getValue() : domain->getId(); |
---|
| 775 | StdString appendDomId = singleDomain ? "" : "_" + domId; |
---|
| 776 | |
---|
| 777 | switch (domain->type) |
---|
| 778 | { |
---|
| 779 | case CDomain::type_attr::curvilinear: |
---|
| 780 | compress << "y" << appendDomId << " x" << appendDomId; |
---|
| 781 | break; |
---|
| 782 | case CDomain::type_attr::rectilinear: |
---|
| 783 | compress << "lat" << appendDomId << " lon" << appendDomId; |
---|
| 784 | break; |
---|
| 785 | case CDomain::type_attr::unstructured: |
---|
| 786 | compress << "cell" << appendDomId; |
---|
| 787 | break; |
---|
| 788 | } |
---|
| 789 | ++idxDomain; |
---|
| 790 | } |
---|
| 791 | else |
---|
| 792 | { |
---|
| 793 | CAxis* axis = CAxis::get(axisList[axisList.size() - idxAxis - 1]); |
---|
| 794 | compress << (!axis->name.isEmpty() ? axis->name.getValue() : axis->getId()); |
---|
| 795 | ++idxAxis; |
---|
| 796 | } |
---|
| 797 | |
---|
| 798 | if (i != 0) compress << ' '; |
---|
| 799 | } |
---|
| 800 | SuperClassWriter::addAttribute("compress", compress.str(), &varId); |
---|
| 801 | |
---|
| 802 | grid->computeCompressedIndex(); |
---|
| 803 | |
---|
| 804 | CArray<int, 1> indexes(grid->getNumberWrittenIndexes()); |
---|
| 805 | std::map<int, CArray<size_t, 1> >::const_iterator it; |
---|
| 806 | for (it = grid->outIndexFromClient.begin(); it != grid->outIndexFromClient.end(); ++it) |
---|
| 807 | { |
---|
| 808 | const CArray<size_t, 1> compressedIndexes = grid->compressedOutIndexFromClient[it->first]; |
---|
| 809 | for (int i = 0; i < it->second.numElements(); i++) |
---|
| 810 | indexes(compressedIndexes(i)) = it->second(i); |
---|
| 811 | } |
---|
| 812 | |
---|
| 813 | switch (SuperClass::type) |
---|
| 814 | { |
---|
| 815 | case (MULTI_FILE): |
---|
| 816 | { |
---|
| 817 | SuperClassWriter::writeData(indexes, varId, isCollective, 0); |
---|
| 818 | break; |
---|
| 819 | } |
---|
| 820 | case (ONE_FILE): |
---|
| 821 | { |
---|
| 822 | if (grid->doGridHaveDataDistributed()) |
---|
| 823 | grid->getDistributionServer()->computeGlobalIndex(indexes); |
---|
| 824 | |
---|
| 825 | std::vector<StdSize> start, count; |
---|
| 826 | start.push_back(grid->getOffsetWrittenIndexes()); |
---|
| 827 | count.push_back(grid->getNumberWrittenIndexes()); |
---|
| 828 | |
---|
| 829 | SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count); |
---|
| 830 | break; |
---|
| 831 | } |
---|
| 832 | } |
---|
| 833 | } |
---|
| 834 | else |
---|
| 835 | { |
---|
| 836 | for (int i = 0; i < numElement; ++i) |
---|
| 837 | { |
---|
| 838 | StdString varId, compress; |
---|
| 839 | CArray<int, 1> indexes; |
---|
| 840 | bool isDistributed; |
---|
| 841 | StdSize nbIndexes, totalNbIndexes, offset; |
---|
| 842 | int firstGlobalIndex; |
---|
| 843 | |
---|
| 844 | if (axisDomainOrder(i)) |
---|
| 845 | { |
---|
| 846 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
| 847 | if (!domain->isCompressible() |
---|
| 848 | || domain->type == CDomain::type_attr::unstructured |
---|
| 849 | || domain->isWrittenCompressed(this->filename)) |
---|
| 850 | continue; |
---|
| 851 | |
---|
| 852 | StdString domId = !domain->name.isEmpty() ? domain->name.getValue() : domain->getId(); |
---|
| 853 | StdString appendDomId = singleDomain ? "" : "_" + domId; |
---|
| 854 | |
---|
| 855 | varId = domId + "_points"; |
---|
| 856 | switch (domain->type) |
---|
| 857 | { |
---|
| 858 | case CDomain::type_attr::curvilinear: |
---|
| 859 | compress = "y" + appendDomId + " x" + appendDomId; |
---|
| 860 | break; |
---|
| 861 | case CDomain::type_attr::rectilinear: |
---|
| 862 | compress = "lat" + appendDomId + " lon" + appendDomId; |
---|
| 863 | break; |
---|
| 864 | } |
---|
| 865 | |
---|
| 866 | const std::vector<int>& indexesToWrite = domain->getIndexesToWrite(); |
---|
| 867 | indexes.resize(indexesToWrite.size()); |
---|
| 868 | for (int n = 0; n < indexes.numElements(); ++n) |
---|
| 869 | indexes(n) = indexesToWrite[n]; |
---|
| 870 | |
---|
| 871 | isDistributed = domain->isDistributed(); |
---|
| 872 | nbIndexes = domain->getNumberWrittenIndexes(); |
---|
| 873 | totalNbIndexes = domain->getTotalNumberWrittenIndexes(); |
---|
| 874 | offset = domain->getOffsetWrittenIndexes(); |
---|
| 875 | firstGlobalIndex = domain->ibegin + domain->jbegin * domain->ni_glo; |
---|
| 876 | |
---|
| 877 | domain->addRelFileCompressed(this->filename); |
---|
| 878 | ++idxDomain; |
---|
| 879 | } |
---|
| 880 | else |
---|
| 881 | { |
---|
| 882 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
| 883 | if (!axis->isCompressible() || axis->isWrittenCompressed(this->filename)) |
---|
| 884 | continue; |
---|
| 885 | |
---|
| 886 | StdString axisId = !axis->name.isEmpty() ? axis->name.getValue() : axis->getId(); |
---|
| 887 | varId = axisId + "_points"; |
---|
| 888 | compress = axisId; |
---|
| 889 | |
---|
| 890 | const std::vector<int>& indexesToWrite = axis->getIndexesToWrite(); |
---|
| 891 | indexes.resize(indexesToWrite.size()); |
---|
| 892 | for (int n = 0; n < indexes.numElements(); ++n) |
---|
| 893 | indexes(n) = indexesToWrite[n]; |
---|
| 894 | |
---|
| 895 | isDistributed = axis->isDistributed(); |
---|
| 896 | nbIndexes = axis->getNumberWrittenIndexes(); |
---|
| 897 | totalNbIndexes = axis->getTotalNumberWrittenIndexes(); |
---|
| 898 | offset = axis->getOffsetWrittenIndexes(); |
---|
| 899 | firstGlobalIndex = axis->begin; |
---|
| 900 | |
---|
| 901 | axis->addRelFileCompressed(this->filename); |
---|
| 902 | ++idxAxis; |
---|
| 903 | } |
---|
| 904 | |
---|
| 905 | if (!varId.empty()) |
---|
| 906 | { |
---|
| 907 | SuperClassWriter::addDimension(varId, (SuperClass::type == MULTI_FILE) ? nbIndexes : totalNbIndexes); |
---|
| 908 | |
---|
| 909 | dims.clear(); |
---|
| 910 | dims.push_back(varId); |
---|
| 911 | SuperClassWriter::addVariable(varId, NC_INT, dims); |
---|
| 912 | |
---|
| 913 | SuperClassWriter::addAttribute("compress", compress, &varId); |
---|
| 914 | |
---|
| 915 | switch (SuperClass::type) |
---|
| 916 | { |
---|
| 917 | case (MULTI_FILE): |
---|
| 918 | { |
---|
| 919 | indexes -= firstGlobalIndex; |
---|
| 920 | SuperClassWriter::writeData(indexes, varId, isCollective, 0); |
---|
| 921 | break; |
---|
| 922 | } |
---|
| 923 | case (ONE_FILE): |
---|
| 924 | { |
---|
| 925 | std::vector<StdSize> start, count; |
---|
| 926 | start.push_back(offset); |
---|
| 927 | count.push_back(nbIndexes); |
---|
| 928 | |
---|
| 929 | SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count); |
---|
| 930 | break; |
---|
| 931 | } |
---|
| 932 | } |
---|
| 933 | } |
---|
| 934 | } |
---|
| 935 | |
---|
| 936 | if (!dims.empty()) |
---|
| 937 | grid->computeCompressedIndex(); |
---|
| 938 | } |
---|
| 939 | |
---|
| 940 | grid->addRelFileCompressed(this->filename); |
---|
| 941 | } |
---|
| 942 | catch (CNetCdfException& e) |
---|
| 943 | { |
---|
| 944 | StdString msg("On writing compressed grid : "); |
---|
| 945 | msg.append(grid->getId()); msg.append("\n"); |
---|
| 946 | msg.append("In the context : "); |
---|
| 947 | CContext* context = CContext::getCurrent(); |
---|
| 948 | msg.append(context->getId()); msg.append("\n"); |
---|
| 949 | msg.append(e.what()); |
---|
| 950 | ERROR("CNc4DataOutput::writeGridCompressed_(CGrid* grid)", << msg); |
---|
| 951 | } |
---|
| 952 | } |
---|
| 953 | |
---|
| 954 | //-------------------------------------------------------------- |
---|
| 955 | |
---|
[391] | 956 | void CNc4DataOutput::writeTimeDimension_(void) |
---|
| 957 | { |
---|
[498] | 958 | try |
---|
| 959 | { |
---|
| 960 | SuperClassWriter::addDimension("time_counter"); |
---|
| 961 | } |
---|
| 962 | catch (CNetCdfException& e) |
---|
| 963 | { |
---|
[614] | 964 | StdString msg("On writing time dimension : time_couter\n"); |
---|
[498] | 965 | msg.append("In the context : "); |
---|
| 966 | CContext* context = CContext::getCurrent() ; |
---|
| 967 | msg.append(context->getId()); msg.append("\n"); |
---|
| 968 | msg.append(e.what()); |
---|
| 969 | ERROR("CNc4DataOutput::writeTimeDimension_(void)", << msg); |
---|
| 970 | } |
---|
[391] | 971 | } |
---|
[676] | 972 | |
---|
[219] | 973 | //-------------------------------------------------------------- |
---|
| 974 | |
---|
[347] | 975 | void CNc4DataOutput::writeField_(CField* field) |
---|
[219] | 976 | { |
---|
[347] | 977 | CContext* context = CContext::getCurrent() ; |
---|
[300] | 978 | CContextServer* server=context->server ; |
---|
| 979 | |
---|
[219] | 980 | std::vector<StdString> dims, coodinates; |
---|
[347] | 981 | CGrid* grid = field->grid; |
---|
[567] | 982 | if (!grid->doGridHaveDataToWrite()) |
---|
| 983 | if (SuperClass::type==MULTI_FILE) return ; |
---|
[488] | 984 | |
---|
[575] | 985 | CArray<bool,1> axisDomainOrder = grid->axis_domain_order; |
---|
[567] | 986 | int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0; |
---|
| 987 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 988 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
[219] | 989 | |
---|
[567] | 990 | StdString timeid = StdString("time_counter"); |
---|
| 991 | StdString dimXid,dimYid; |
---|
| 992 | std::deque<StdString> dimIdList, dimCoordList; |
---|
[611] | 993 | bool hasArea = false; |
---|
| 994 | StdString cellMeasures = "area:"; |
---|
[676] | 995 | bool compressedOutput = !field->indexed_output.isEmpty() && field->indexed_output; |
---|
[488] | 996 | |
---|
[567] | 997 | for (int i = 0; i < numElement; ++i) |
---|
[434] | 998 | { |
---|
[567] | 999 | if (axisDomainOrder(i)) |
---|
| 1000 | { |
---|
| 1001 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
[676] | 1002 | StdString domId = !domain->name.isEmpty() ? domain->name.getValue() : domain->getId(); |
---|
| 1003 | StdString appendDomId = singleDomain ? "" : "_" + domId ; |
---|
| 1004 | |
---|
| 1005 | if (compressedOutput && domain->isCompressible() && domain->type != CDomain::type_attr::unstructured) |
---|
| 1006 | { |
---|
| 1007 | dimIdList.push_back(domId + "_points"); |
---|
| 1008 | field->setUseCompressedOutput(); |
---|
| 1009 | } |
---|
| 1010 | |
---|
[567] | 1011 | switch (domain->type) |
---|
| 1012 | { |
---|
[676] | 1013 | case CDomain::type_attr::curvilinear: |
---|
| 1014 | if (!compressedOutput || !domain->isCompressible()) |
---|
| 1015 | { |
---|
| 1016 | dimXid = StdString("x").append(appendDomId); |
---|
| 1017 | dimIdList.push_back(dimXid); |
---|
| 1018 | dimYid = StdString("y").append(appendDomId); |
---|
| 1019 | dimIdList.push_back(dimYid); |
---|
| 1020 | } |
---|
| 1021 | dimCoordList.push_back(StdString("nav_lon").append(appendDomId)); |
---|
| 1022 | dimCoordList.push_back(StdString("nav_lat").append(appendDomId)); |
---|
[567] | 1023 | break ; |
---|
[676] | 1024 | case CDomain::type_attr::rectilinear: |
---|
| 1025 | if (!compressedOutput || !domain->isCompressible()) |
---|
| 1026 | { |
---|
| 1027 | dimXid = StdString("lon").append(appendDomId); |
---|
| 1028 | dimIdList.push_back(dimXid); |
---|
| 1029 | dimYid = StdString("lat").append(appendDomId); |
---|
| 1030 | dimIdList.push_back(dimYid); |
---|
| 1031 | } |
---|
[567] | 1032 | break ; |
---|
[676] | 1033 | case CDomain::type_attr::unstructured: |
---|
| 1034 | dimXid = StdString("cell").append(appendDomId); |
---|
[567] | 1035 | dimIdList.push_back(dimXid); |
---|
[676] | 1036 | dimCoordList.push_back(StdString("lon").append(appendDomId)); |
---|
| 1037 | dimCoordList.push_back(StdString("lat").append(appendDomId)); |
---|
[567] | 1038 | break ; |
---|
[676] | 1039 | } |
---|
| 1040 | if (domain->hasArea) |
---|
| 1041 | { |
---|
| 1042 | hasArea = true; |
---|
| 1043 | cellMeasures += " area" + appendDomId; |
---|
| 1044 | } |
---|
| 1045 | ++idxDomain; |
---|
[567] | 1046 | } |
---|
| 1047 | else |
---|
| 1048 | { |
---|
| 1049 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
[676] | 1050 | StdString axisId = !axis->name.isEmpty() ? axis->name.getValue() : axis->getId(); |
---|
| 1051 | |
---|
| 1052 | if (compressedOutput && axis->isCompressible()) |
---|
| 1053 | { |
---|
| 1054 | dimIdList.push_back(axisId + "_points"); |
---|
| 1055 | field->setUseCompressedOutput(); |
---|
| 1056 | } |
---|
| 1057 | else |
---|
| 1058 | dimIdList.push_back(axisId); |
---|
| 1059 | |
---|
| 1060 | dimCoordList.push_back(axisId); |
---|
| 1061 | ++idxAxis; |
---|
[567] | 1062 | } |
---|
| 1063 | } |
---|
[488] | 1064 | |
---|
| 1065 | /* |
---|
[300] | 1066 | StdString lonid_loc = (server->intraCommSize > 1) |
---|
[318] | 1067 | ? StdString("lon").append(appendDomid).append("_local") |
---|
[278] | 1068 | : lonid; |
---|
[300] | 1069 | StdString latid_loc = (server->intraCommSize > 1) |
---|
[318] | 1070 | ? StdString("lat").append(appendDomid).append("_local") |
---|
[278] | 1071 | : latid; |
---|
[391] | 1072 | */ |
---|
[219] | 1073 | StdString fieldid = (!field->name.isEmpty()) |
---|
| 1074 | ? field->name.getValue() : field->getBaseFieldReference()->getId(); |
---|
| 1075 | |
---|
[300] | 1076 | // unsigned int ssize = domain->zoom_ni_loc.getValue() * domain->zoom_nj_loc.getValue(); |
---|
| 1077 | // bool isCurvilinear = (domain->lonvalue.getValue()->size() == ssize); |
---|
[488] | 1078 | // bool isCurvilinear = domain->isCurvilinear ; |
---|
| 1079 | |
---|
[464] | 1080 | nc_type type ; |
---|
| 1081 | if (field->prec.isEmpty()) type = NC_FLOAT ; |
---|
| 1082 | else |
---|
| 1083 | { |
---|
| 1084 | if (field->prec==2) type = NC_SHORT ; |
---|
| 1085 | else if (field->prec==4) type = NC_FLOAT ; |
---|
[488] | 1086 | else if (field->prec==8) type = NC_DOUBLE ; |
---|
[464] | 1087 | } |
---|
[488] | 1088 | |
---|
[645] | 1089 | bool wtime = !(!field->operation.isEmpty() && field->getOperationTimeType() == func::CFunctor::once); |
---|
[488] | 1090 | |
---|
[219] | 1091 | if (wtime) |
---|
| 1092 | { |
---|
[488] | 1093 | |
---|
[449] | 1094 | //StdOStringStream oss; |
---|
| 1095 | // oss << "time_" << field->operation.getValue() |
---|
| 1096 | // << "_" << field->getRelFile()->output_freq.getValue(); |
---|
[488] | 1097 | //oss |
---|
[645] | 1098 | if (field->getOperationTimeType() == func::CFunctor::instant) coodinates.push_back(string("time_instant")); |
---|
| 1099 | else if (field->getOperationTimeType() == func::CFunctor::centered) coodinates.push_back(string("time_centered")); |
---|
[219] | 1100 | dims.push_back(timeid); |
---|
| 1101 | } |
---|
| 1102 | |
---|
[676] | 1103 | if (compressedOutput && grid->isCompressible()) |
---|
[219] | 1104 | { |
---|
[676] | 1105 | dims.push_back(grid->getId() + "_points"); |
---|
| 1106 | field->setUseCompressedOutput(); |
---|
[219] | 1107 | } |
---|
[676] | 1108 | else |
---|
| 1109 | { |
---|
| 1110 | while (!dimIdList.empty()) |
---|
| 1111 | { |
---|
| 1112 | dims.push_back(dimIdList.back()); |
---|
| 1113 | dimIdList.pop_back(); |
---|
| 1114 | } |
---|
| 1115 | } |
---|
[219] | 1116 | |
---|
[567] | 1117 | while (!dimCoordList.empty()) |
---|
[219] | 1118 | { |
---|
[567] | 1119 | coodinates.push_back(dimCoordList.back()); |
---|
| 1120 | dimCoordList.pop_back(); |
---|
[219] | 1121 | } |
---|
| 1122 | |
---|
[498] | 1123 | try |
---|
| 1124 | { |
---|
| 1125 | SuperClassWriter::addVariable(fieldid, type, dims); |
---|
[488] | 1126 | |
---|
[498] | 1127 | if (!field->standard_name.isEmpty()) |
---|
| 1128 | SuperClassWriter::addAttribute |
---|
| 1129 | ("standard_name", field->standard_name.getValue(), &fieldid); |
---|
[219] | 1130 | |
---|
[498] | 1131 | if (!field->long_name.isEmpty()) |
---|
| 1132 | SuperClassWriter::addAttribute |
---|
| 1133 | ("long_name", field->long_name.getValue(), &fieldid); |
---|
[219] | 1134 | |
---|
[498] | 1135 | if (!field->unit.isEmpty()) |
---|
| 1136 | SuperClassWriter::addAttribute |
---|
| 1137 | ("units", field->unit.getValue(), &fieldid); |
---|
[463] | 1138 | |
---|
[498] | 1139 | if (!field->valid_min.isEmpty()) |
---|
| 1140 | SuperClassWriter::addAttribute |
---|
| 1141 | ("valid_min", field->valid_min.getValue(), &fieldid); |
---|
[463] | 1142 | |
---|
[498] | 1143 | if (!field->valid_max.isEmpty()) |
---|
| 1144 | SuperClassWriter::addAttribute |
---|
| 1145 | ("valid_max", field->valid_max.getValue(), &fieldid); |
---|
[464] | 1146 | |
---|
[498] | 1147 | if (!field->scale_factor.isEmpty()) |
---|
| 1148 | SuperClassWriter::addAttribute |
---|
| 1149 | ("scale_factor", field->scale_factor.getValue(), &fieldid); |
---|
[464] | 1150 | |
---|
[498] | 1151 | if (!field->add_offset.isEmpty()) |
---|
| 1152 | SuperClassWriter::addAttribute |
---|
| 1153 | ("add_offset", field->add_offset.getValue(), &fieldid); |
---|
[488] | 1154 | |
---|
[498] | 1155 | SuperClassWriter::addAttribute |
---|
| 1156 | ("online_operation", field->operation.getValue(), &fieldid); |
---|
[472] | 1157 | |
---|
[498] | 1158 | // write child variables as attributes |
---|
[488] | 1159 | |
---|
| 1160 | |
---|
[498] | 1161 | vector<CVariable*> listVars = field->getAllVariables() ; |
---|
| 1162 | for (vector<CVariable*>::iterator it = listVars.begin() ;it != listVars.end(); it++) writeAttribute_(*it, fieldid) ; |
---|
[472] | 1163 | |
---|
[488] | 1164 | |
---|
[498] | 1165 | if (wtime) |
---|
| 1166 | { |
---|
[614] | 1167 | CDuration freqOp = field->freq_op.getValue(); |
---|
| 1168 | freqOp.solveTimeStep(*context->calendar); |
---|
| 1169 | StdString freqOpStr = freqOp.toStringUDUnits(); |
---|
[612] | 1170 | SuperClassWriter::addAttribute("interval_operation", freqOpStr, &fieldid); |
---|
[437] | 1171 | |
---|
[614] | 1172 | CDuration freqOut = field->getRelFile()->output_freq.getValue(); |
---|
| 1173 | freqOut.solveTimeStep(*context->calendar); |
---|
| 1174 | SuperClassWriter::addAttribute("interval_write", freqOut.toStringUDUnits(), &fieldid); |
---|
[612] | 1175 | |
---|
[618] | 1176 | StdString cellMethods = "time: "; |
---|
[612] | 1177 | if (field->operation.getValue() == "instant") cellMethods += "point"; |
---|
| 1178 | else if (field->operation.getValue() == "average") cellMethods += "mean"; |
---|
| 1179 | else if (field->operation.getValue() == "accumulate") cellMethods += "sum"; |
---|
| 1180 | else cellMethods += field->operation; |
---|
[614] | 1181 | if (freqOp.resolve(*context->calendar) != freqOut.resolve(*context->calendar)) |
---|
| 1182 | cellMethods += " (interval: " + freqOpStr + ")"; |
---|
[612] | 1183 | SuperClassWriter::addAttribute("cell_methods", cellMethods, &fieldid); |
---|
[498] | 1184 | } |
---|
[488] | 1185 | |
---|
[611] | 1186 | if (hasArea) |
---|
| 1187 | SuperClassWriter::addAttribute("cell_measures", cellMeasures, &fieldid); |
---|
| 1188 | |
---|
[498] | 1189 | if (!field->default_value.isEmpty()) |
---|
| 1190 | { |
---|
| 1191 | double default_value = field->default_value.getValue(); |
---|
| 1192 | float fdefault_value = (float)default_value; |
---|
| 1193 | if (type == NC_DOUBLE) |
---|
| 1194 | SuperClassWriter::setDefaultValue(fieldid, &default_value); |
---|
| 1195 | else |
---|
| 1196 | SuperClassWriter::setDefaultValue(fieldid, &fdefault_value); |
---|
| 1197 | } |
---|
| 1198 | else |
---|
[517] | 1199 | SuperClassWriter::setDefaultValue(fieldid, (double*)NULL); |
---|
[219] | 1200 | |
---|
[606] | 1201 | if (field->compression_level.isEmpty()) |
---|
| 1202 | field->compression_level = field->file->compression_level.isEmpty() ? 0 : field->file->compression_level; |
---|
| 1203 | SuperClassWriter::setCompressionLevel(fieldid, field->compression_level); |
---|
| 1204 | |
---|
[498] | 1205 | { // Ecriture des coordonnées |
---|
[488] | 1206 | |
---|
[498] | 1207 | StdString coordstr; //boost::algorithm::join(coodinates, " ") |
---|
| 1208 | std::vector<StdString>::iterator |
---|
| 1209 | itc = coodinates.begin(), endc = coodinates.end(); |
---|
[488] | 1210 | |
---|
[498] | 1211 | for (; itc!= endc; itc++) |
---|
| 1212 | { |
---|
| 1213 | StdString & coord = *itc; |
---|
| 1214 | if (itc+1 != endc) |
---|
| 1215 | coordstr.append(coord).append(" "); |
---|
| 1216 | else coordstr.append(coord); |
---|
| 1217 | } |
---|
[219] | 1218 | |
---|
[498] | 1219 | SuperClassWriter::addAttribute("coordinates", coordstr, &fieldid); |
---|
[219] | 1220 | |
---|
[498] | 1221 | } |
---|
[219] | 1222 | } |
---|
[498] | 1223 | catch (CNetCdfException& e) |
---|
| 1224 | { |
---|
| 1225 | StdString msg("On writing field : "); |
---|
| 1226 | msg.append(fieldid); msg.append("\n"); |
---|
| 1227 | msg.append("In the context : "); |
---|
| 1228 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1229 | msg.append(e.what()); |
---|
| 1230 | ERROR("CNc4DataOutput::writeField_(CField* field)", << msg); |
---|
| 1231 | } |
---|
[219] | 1232 | } |
---|
| 1233 | |
---|
| 1234 | //-------------------------------------------------------------- |
---|
| 1235 | |
---|
[347] | 1236 | void CNc4DataOutput::writeFile_ (CFile* file) |
---|
[219] | 1237 | { |
---|
| 1238 | StdString filename = (!file->name.isEmpty()) |
---|
| 1239 | ? file->name.getValue() : file->getId(); |
---|
| 1240 | StdString description = (!file->description.isEmpty()) |
---|
| 1241 | ? file->description.getValue() |
---|
[335] | 1242 | : StdString("Created by xios"); |
---|
[609] | 1243 | |
---|
| 1244 | singleDomain = (file->nbDomains == 1); |
---|
| 1245 | |
---|
[498] | 1246 | try |
---|
| 1247 | { |
---|
| 1248 | this->writeFileAttributes(filename, description, |
---|
[614] | 1249 | StdString("CF-1.5"), |
---|
[498] | 1250 | StdString("An IPSL model"), |
---|
| 1251 | this->getTimeStamp()); |
---|
[609] | 1252 | |
---|
[614] | 1253 | SuperClassWriter::addDimension("axis_nbounds", 2); |
---|
[498] | 1254 | } |
---|
| 1255 | catch (CNetCdfException& e) |
---|
| 1256 | { |
---|
| 1257 | StdString msg("On writing file : "); |
---|
| 1258 | msg.append(filename); msg.append("\n"); |
---|
| 1259 | msg.append("In the context : "); |
---|
| 1260 | CContext* context = CContext::getCurrent() ; |
---|
| 1261 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1262 | msg.append(e.what()); |
---|
| 1263 | ERROR("CNc4DataOutput::writeFile_ (CFile* file)", << msg); |
---|
| 1264 | } |
---|
[219] | 1265 | } |
---|
[488] | 1266 | |
---|
[472] | 1267 | void CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId) |
---|
| 1268 | { |
---|
| 1269 | string name ; |
---|
| 1270 | if (!var->name.isEmpty()) name=var->name ; |
---|
| 1271 | else if (var->hasId()) name=var->getId() ; |
---|
| 1272 | else return ; |
---|
[488] | 1273 | |
---|
[498] | 1274 | try |
---|
| 1275 | { |
---|
[527] | 1276 | if (var->type.getValue() == CVariable::type_attr::t_int || var->type.getValue() == CVariable::type_attr::t_int32) |
---|
| 1277 | addAttribute(name, var->getData<int>(), &fieldId); |
---|
| 1278 | else if (var->type.getValue() == CVariable::type_attr::t_int16) |
---|
| 1279 | addAttribute(name, var->getData<short int>(), &fieldId); |
---|
| 1280 | else if (var->type.getValue() == CVariable::type_attr::t_float) |
---|
| 1281 | addAttribute(name, var->getData<float>(), &fieldId); |
---|
| 1282 | else if (var->type.getValue() == CVariable::type_attr::t_double) |
---|
| 1283 | addAttribute(name, var->getData<double>(), &fieldId); |
---|
| 1284 | else if (var->type.getValue() == CVariable::type_attr::t_string) |
---|
| 1285 | addAttribute(name, var->getData<string>(), &fieldId); |
---|
| 1286 | else |
---|
| 1287 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", |
---|
| 1288 | << "Unsupported variable of type " << var->type.getStringValue()); |
---|
[498] | 1289 | } |
---|
| 1290 | catch (CNetCdfException& e) |
---|
| 1291 | { |
---|
| 1292 | StdString msg("On writing attributes of variable with name : "); |
---|
| 1293 | msg.append(name); msg.append("in the field "); msg.append(fieldId); msg.append("\n"); |
---|
| 1294 | msg.append("In the context : "); |
---|
| 1295 | CContext* context = CContext::getCurrent() ; |
---|
| 1296 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1297 | msg.append(e.what()); |
---|
| 1298 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", << msg); |
---|
| 1299 | } |
---|
[472] | 1300 | } |
---|
[488] | 1301 | |
---|
[472] | 1302 | void CNc4DataOutput::writeAttribute_ (CVariable* var) |
---|
| 1303 | { |
---|
| 1304 | string name ; |
---|
| 1305 | if (!var->name.isEmpty()) name=var->name ; |
---|
| 1306 | else if (var->hasId()) name=var->getId() ; |
---|
| 1307 | else return ; |
---|
[498] | 1308 | try |
---|
| 1309 | { |
---|
[527] | 1310 | if (var->type.getValue() == CVariable::type_attr::t_int || var->type.getValue() == CVariable::type_attr::t_int32) |
---|
| 1311 | addAttribute(name, var->getData<int>()); |
---|
| 1312 | else if (var->type.getValue() == CVariable::type_attr::t_int16) |
---|
| 1313 | addAttribute(name, var->getData<short int>()); |
---|
| 1314 | else if (var->type.getValue() == CVariable::type_attr::t_float) |
---|
| 1315 | addAttribute(name, var->getData<float>()); |
---|
| 1316 | else if (var->type.getValue() == CVariable::type_attr::t_double) |
---|
| 1317 | addAttribute(name, var->getData<double>()); |
---|
| 1318 | else if (var->type.getValue() == CVariable::type_attr::t_string) |
---|
| 1319 | addAttribute(name, var->getData<string>()); |
---|
| 1320 | else |
---|
| 1321 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", |
---|
| 1322 | << "Unsupported variable of type " << var->type.getStringValue()); |
---|
[498] | 1323 | } |
---|
| 1324 | catch (CNetCdfException& e) |
---|
| 1325 | { |
---|
| 1326 | StdString msg("On writing attributes of variable with name : "); |
---|
| 1327 | msg.append(name); msg.append("\n"); |
---|
| 1328 | msg.append("In the context : "); |
---|
| 1329 | CContext* context = CContext::getCurrent() ; |
---|
| 1330 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1331 | msg.append(e.what()); |
---|
| 1332 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", << msg); |
---|
| 1333 | } |
---|
[488] | 1334 | } |
---|
| 1335 | |
---|
[321] | 1336 | void CNc4DataOutput::syncFile_ (void) |
---|
| 1337 | { |
---|
[498] | 1338 | try |
---|
| 1339 | { |
---|
| 1340 | SuperClassWriter::sync() ; |
---|
| 1341 | } |
---|
| 1342 | catch (CNetCdfException& e) |
---|
| 1343 | { |
---|
| 1344 | StdString msg("On synchronizing the write among processes"); |
---|
| 1345 | msg.append("In the context : "); |
---|
| 1346 | CContext* context = CContext::getCurrent() ; |
---|
| 1347 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1348 | msg.append(e.what()); |
---|
| 1349 | ERROR("CNc4DataOutput::syncFile_ (void)", << msg); |
---|
| 1350 | } |
---|
[321] | 1351 | } |
---|
[219] | 1352 | |
---|
[286] | 1353 | void CNc4DataOutput::closeFile_ (void) |
---|
| 1354 | { |
---|
[498] | 1355 | try |
---|
| 1356 | { |
---|
| 1357 | SuperClassWriter::close() ; |
---|
| 1358 | } |
---|
| 1359 | catch (CNetCdfException& e) |
---|
| 1360 | { |
---|
| 1361 | StdString msg("On closing file"); |
---|
| 1362 | msg.append("In the context : "); |
---|
| 1363 | CContext* context = CContext::getCurrent() ; |
---|
| 1364 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1365 | msg.append(e.what()); |
---|
| 1366 | ERROR("CNc4DataOutput::syncFile_ (void)", << msg); |
---|
| 1367 | } |
---|
| 1368 | |
---|
[286] | 1369 | } |
---|
| 1370 | |
---|
[219] | 1371 | //--------------------------------------------------------------- |
---|
| 1372 | |
---|
| 1373 | StdString CNc4DataOutput::getTimeStamp(void) const |
---|
| 1374 | { |
---|
| 1375 | const int buffer_size = 100; |
---|
| 1376 | time_t rawtime; |
---|
| 1377 | struct tm * timeinfo = NULL; |
---|
| 1378 | char buffer [buffer_size]; |
---|
| 1379 | |
---|
| 1380 | time ( &rawtime ); |
---|
| 1381 | timeinfo = localtime ( &rawtime ); |
---|
| 1382 | strftime (buffer, buffer_size, "%Y-%b-%d %H:%M:%S %Z", timeinfo); |
---|
| 1383 | |
---|
| 1384 | return (StdString(buffer)); |
---|
| 1385 | } |
---|
[488] | 1386 | |
---|
[219] | 1387 | //--------------------------------------------------------------- |
---|
[488] | 1388 | |
---|
[347] | 1389 | void CNc4DataOutput::writeFieldData_ (CField* field) |
---|
[219] | 1390 | { |
---|
[347] | 1391 | CContext* context = CContext::getCurrent() ; |
---|
[321] | 1392 | // if (field->getRelFile()->isSyncTime()) SuperClassWriter::sync() ; |
---|
[413] | 1393 | CContextServer* server=context->server ; |
---|
[300] | 1394 | |
---|
[347] | 1395 | CGrid* grid = field->grid ; |
---|
[488] | 1396 | |
---|
[567] | 1397 | if (!grid->doGridHaveDataToWrite()) |
---|
| 1398 | if (SuperClass::type==MULTI_FILE || !isCollective) return ; |
---|
[286] | 1399 | |
---|
[488] | 1400 | StdString fieldid = (!field->name.isEmpty()) |
---|
| 1401 | ? field->name.getValue() |
---|
[219] | 1402 | : field->getBaseFieldReference()->getId(); |
---|
[488] | 1403 | |
---|
[278] | 1404 | StdOStringStream oss; |
---|
[449] | 1405 | string timeAxisId ; |
---|
[645] | 1406 | if (field->getOperationTimeType() == func::CFunctor::instant) timeAxisId="time_instant" ; |
---|
| 1407 | else if (field->getOperationTimeType() == func::CFunctor::centered) timeAxisId="time_centered" ; |
---|
[449] | 1408 | |
---|
[488] | 1409 | StdString timeBoundId("time_counter_bounds"); |
---|
| 1410 | |
---|
| 1411 | StdString timeAxisBoundId; |
---|
[645] | 1412 | if (field->getOperationTimeType() == func::CFunctor::instant) timeAxisBoundId="time_instant_bounds" ; |
---|
| 1413 | else if (field->getOperationTimeType() == func::CFunctor::centered) timeAxisBoundId="time_centered_bounds" ; |
---|
[488] | 1414 | |
---|
[369] | 1415 | CArray<double,1> time_data(1) ; |
---|
[449] | 1416 | CArray<double,1> time_counter(1) ; |
---|
[488] | 1417 | CArray<double,1> time_counter_bound(2); |
---|
| 1418 | CArray<double,1> time_data_bound(2); |
---|
| 1419 | |
---|
[645] | 1420 | bool wtime = !(!field->operation.isEmpty() && (field->getOperationTimeType() == func::CFunctor::once)); |
---|
[488] | 1421 | |
---|
[444] | 1422 | if (wtime) |
---|
| 1423 | { |
---|
[651] | 1424 | time_counter(0)= (Time(field->last_Write_srv) + Time(field->lastlast_Write_srv)) / 2; |
---|
[645] | 1425 | if (field->getOperationTimeType() == func::CFunctor::instant) |
---|
[651] | 1426 | time_data(0) = Time(field->last_Write_srv); |
---|
[645] | 1427 | else if (field->getOperationTimeType() == func::CFunctor::centered) time_data(0) = time_counter(0); |
---|
[488] | 1428 | |
---|
[651] | 1429 | time_counter_bound(0) = Time(field->lastlast_Write_srv); |
---|
| 1430 | time_counter_bound(1) = Time(field->last_Write_srv); |
---|
[645] | 1431 | if (field->getOperationTimeType() == func::CFunctor::instant) |
---|
[651] | 1432 | time_data_bound(0) = time_data_bound(1) = Time(field->last_Write_srv); |
---|
[645] | 1433 | else if (field->getOperationTimeType() == func::CFunctor::centered) |
---|
[488] | 1434 | { |
---|
| 1435 | time_data_bound(0) = time_counter_bound(0); |
---|
| 1436 | time_data_bound(1) = time_counter_bound(1); |
---|
| 1437 | } |
---|
[444] | 1438 | } |
---|
[488] | 1439 | |
---|
[413] | 1440 | bool isRoot ; |
---|
| 1441 | if (server->intraCommRank==0) isRoot=true ; |
---|
| 1442 | else isRoot=false ; |
---|
[488] | 1443 | |
---|
[464] | 1444 | if (!field->scale_factor.isEmpty() || !field->add_offset.isEmpty()) |
---|
| 1445 | { |
---|
| 1446 | double scaleFactor=1. ; |
---|
| 1447 | double addOffset=0. ; |
---|
| 1448 | if (!field->scale_factor.isEmpty()) scaleFactor=field->scale_factor ; |
---|
| 1449 | if (!field->add_offset.isEmpty()) addOffset=field->add_offset ; |
---|
| 1450 | field->scaleFactorAddOffset(scaleFactor,addOffset) ; |
---|
| 1451 | } |
---|
[488] | 1452 | |
---|
[498] | 1453 | try |
---|
[219] | 1454 | { |
---|
[676] | 1455 | size_t writtenSize; |
---|
| 1456 | if (field->getUseCompressedOutput()) |
---|
| 1457 | writtenSize = grid->getNumberWrittenIndexes(); |
---|
| 1458 | else |
---|
| 1459 | writtenSize = grid->getWrittenDataSize(); |
---|
| 1460 | |
---|
| 1461 | CArray<double,1> fieldData(writtenSize); |
---|
[567] | 1462 | if (!field->default_value.isEmpty()) fieldData = field->default_value; |
---|
[676] | 1463 | |
---|
| 1464 | if (field->getUseCompressedOutput()) |
---|
| 1465 | field->outputCompressedField(fieldData); |
---|
| 1466 | else |
---|
| 1467 | field->outputField(fieldData); |
---|
| 1468 | |
---|
[567] | 1469 | if (!field->prec.isEmpty() && field->prec==2) fieldData=round(fieldData) ; |
---|
| 1470 | |
---|
| 1471 | switch (SuperClass::type) |
---|
[498] | 1472 | { |
---|
[567] | 1473 | case (MULTI_FILE) : |
---|
| 1474 | { |
---|
| 1475 | SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep()-1); |
---|
| 1476 | if (wtime) |
---|
| 1477 | { |
---|
| 1478 | SuperClassWriter::writeData(time_data, timeAxisId, isCollective, field->getNStep()-1); |
---|
| 1479 | SuperClassWriter::writeData(time_counter, string("time_counter"), isCollective, field->getNStep()-1); |
---|
| 1480 | SuperClassWriter::writeData(time_counter_bound, timeBoundId, isCollective, field->getNStep()-1); |
---|
| 1481 | SuperClassWriter::writeData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep()-1); |
---|
| 1482 | } |
---|
| 1483 | break ; |
---|
| 1484 | } |
---|
| 1485 | case (ONE_FILE) : |
---|
| 1486 | { |
---|
[676] | 1487 | const std::vector<int>& nZoomBeginGlobal = grid->getDistributionServer()->getZoomBeginGlobal(); |
---|
| 1488 | const std::vector<int>& nZoomBeginServer = grid->getDistributionServer()->getZoomBeginServer(); |
---|
| 1489 | const std::vector<int>& nZoomSizeServer = grid->getDistributionServer()->getZoomSizeServer(); |
---|
[464] | 1490 | |
---|
[676] | 1491 | std::vector<StdSize> start, count; |
---|
[464] | 1492 | |
---|
[676] | 1493 | if (field->getUseCompressedOutput()) |
---|
| 1494 | { |
---|
| 1495 | if (grid->isCompressible()) |
---|
| 1496 | { |
---|
| 1497 | start.push_back(grid->getOffsetWrittenIndexes()); |
---|
| 1498 | count.push_back(grid->getNumberWrittenIndexes()); |
---|
| 1499 | } |
---|
| 1500 | else |
---|
| 1501 | { |
---|
| 1502 | CArray<bool,1> axisDomainOrder = grid->axis_domain_order; |
---|
| 1503 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 1504 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
| 1505 | int numElement = axisDomainOrder.numElements(); |
---|
| 1506 | int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
---|
| 1507 | int idx = nZoomBeginGlobal.size() - 1; |
---|
[464] | 1508 | |
---|
[676] | 1509 | start.reserve(nZoomBeginGlobal.size()); |
---|
| 1510 | count.reserve(nZoomBeginGlobal.size()); |
---|
| 1511 | |
---|
| 1512 | |
---|
| 1513 | for (int i = numElement - 1; i >= 0; --i) |
---|
| 1514 | { |
---|
| 1515 | if (axisDomainOrder(i)) |
---|
| 1516 | { |
---|
| 1517 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
| 1518 | |
---|
| 1519 | if (domain->isCompressible()) |
---|
| 1520 | { |
---|
| 1521 | start.push_back(domain->getOffsetWrittenIndexes()); |
---|
| 1522 | count.push_back(domain->getNumberWrittenIndexes()); |
---|
| 1523 | } |
---|
| 1524 | else |
---|
| 1525 | { |
---|
| 1526 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 1527 | count.push_back(nZoomSizeServer[idx]); |
---|
| 1528 | start.push_back(nZoomBeginServer[idx - 1] - nZoomBeginGlobal[idx - 1]); |
---|
| 1529 | count.push_back(nZoomSizeServer[idx - 1]); |
---|
| 1530 | } |
---|
| 1531 | |
---|
| 1532 | --idxDomain; |
---|
| 1533 | idx -= 2; |
---|
| 1534 | } |
---|
| 1535 | else |
---|
| 1536 | { |
---|
| 1537 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
| 1538 | |
---|
| 1539 | if (axis->isCompressible()) |
---|
| 1540 | { |
---|
| 1541 | start.push_back(axis->getOffsetWrittenIndexes()); |
---|
| 1542 | count.push_back(axis->getNumberWrittenIndexes()); |
---|
| 1543 | } |
---|
| 1544 | else |
---|
| 1545 | { |
---|
| 1546 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 1547 | count.push_back(nZoomSizeServer[idx]); |
---|
| 1548 | } |
---|
| 1549 | |
---|
| 1550 | --idxAxis; |
---|
| 1551 | --idx; |
---|
| 1552 | } |
---|
| 1553 | } |
---|
| 1554 | } |
---|
| 1555 | } |
---|
| 1556 | else |
---|
[498] | 1557 | { |
---|
[676] | 1558 | int ssize = nZoomBeginGlobal.size(); |
---|
| 1559 | |
---|
| 1560 | start.resize(ssize); |
---|
| 1561 | count.resize(ssize); |
---|
| 1562 | |
---|
| 1563 | for (int i = 0; i < ssize; ++i) |
---|
| 1564 | { |
---|
| 1565 | start[i] = nZoomBeginServer[ssize - i - 1] - nZoomBeginGlobal[ssize - i - 1]; |
---|
| 1566 | count[i] = nZoomSizeServer[ssize - i - 1]; |
---|
| 1567 | } |
---|
[498] | 1568 | } |
---|
[488] | 1569 | |
---|
[676] | 1570 | SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1, &start, &count); |
---|
[586] | 1571 | if (wtime) |
---|
| 1572 | { |
---|
[676] | 1573 | SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot); |
---|
| 1574 | SuperClassWriter::writeTimeAxisData(time_counter, string("time_counter"), isCollective, field->getNStep() - 1, isRoot); |
---|
| 1575 | SuperClassWriter::writeTimeAxisData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot); |
---|
| 1576 | SuperClassWriter::writeTimeAxisData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot); |
---|
[586] | 1577 | } |
---|
| 1578 | |
---|
| 1579 | break; |
---|
[286] | 1580 | } |
---|
[567] | 1581 | } |
---|
[219] | 1582 | } |
---|
[498] | 1583 | catch (CNetCdfException& e) |
---|
| 1584 | { |
---|
| 1585 | StdString msg("On writing field data: "); |
---|
| 1586 | msg.append(fieldid); msg.append("\n"); |
---|
| 1587 | msg.append("In the context : "); |
---|
| 1588 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1589 | msg.append(e.what()); |
---|
| 1590 | ERROR("CNc4DataOutput::writeFieldData_ (CField* field)", << msg); |
---|
| 1591 | } |
---|
[219] | 1592 | } |
---|
| 1593 | |
---|
| 1594 | //--------------------------------------------------------------- |
---|
| 1595 | |
---|
| 1596 | void CNc4DataOutput::writeTimeAxis_ |
---|
[347] | 1597 | (CField* field, |
---|
[343] | 1598 | const boost::shared_ptr<CCalendar> cal) |
---|
[219] | 1599 | { |
---|
| 1600 | StdOStringStream oss; |
---|
[488] | 1601 | |
---|
[645] | 1602 | if (field->getOperationTimeType() == func::CFunctor::once) return ; |
---|
[488] | 1603 | |
---|
[449] | 1604 | // oss << "time_" << field->operation.getValue() |
---|
| 1605 | // << "_" << field->getRelFile()->output_freq.getValue(); |
---|
[488] | 1606 | |
---|
[449] | 1607 | // StdString axisid = oss.str(); |
---|
[645] | 1608 | // if (field->getOperationTimeType() == func::CFunctor::centered) axisid="time_centered" ; |
---|
| 1609 | // else if (field->getOperationTimeType() == func::CFunctor::instant) axisid="time_instant" ; |
---|
[219] | 1610 | |
---|
[488] | 1611 | StdString axisid("time_centered") ; |
---|
| 1612 | StdString axisBoundId("time_centered_bounds"); |
---|
| 1613 | StdString timeid("time_counter"); |
---|
[614] | 1614 | StdString timeBoundId("axis_nbounds"); |
---|
[488] | 1615 | |
---|
[645] | 1616 | if (field->getOperationTimeType() == func::CFunctor::instant) |
---|
[488] | 1617 | { |
---|
| 1618 | axisid = "time_instant"; |
---|
| 1619 | axisBoundId = "time_instant_bounds"; |
---|
| 1620 | } |
---|
| 1621 | |
---|
[498] | 1622 | try |
---|
[219] | 1623 | { |
---|
[498] | 1624 | // Adding time_instant or time_centered |
---|
| 1625 | std::vector<StdString> dims; |
---|
| 1626 | dims.push_back(timeid); |
---|
| 1627 | if (!SuperClassWriter::varExist(axisid)) |
---|
| 1628 | { |
---|
| 1629 | SuperClassWriter::addVariable(axisid, NC_DOUBLE, dims); |
---|
[488] | 1630 | |
---|
[498] | 1631 | CDate timeOrigin=cal->getTimeOrigin() ; |
---|
| 1632 | StdOStringStream oss2; |
---|
| 1633 | // oss2<<initDate.getYear()<<"-"<<initDate.getMonth()<<"-"<<initDate.getDay()<<" " |
---|
| 1634 | // <<initDate.getHour()<<"-"<<initDate.getMinute()<<"-"<<initDate.getSecond() ; |
---|
| 1635 | StdString strInitdate=oss2.str() ; |
---|
| 1636 | StdString strTimeOrigin=timeOrigin.toString() ; |
---|
| 1637 | this->writeTimeAxisAttributes |
---|
| 1638 | (axisid, cal->getType(), |
---|
| 1639 | StdString("seconds since ").append(strTimeOrigin), |
---|
| 1640 | strTimeOrigin, axisBoundId); |
---|
| 1641 | } |
---|
[219] | 1642 | |
---|
[498] | 1643 | // Adding time_instant_bounds or time_centered_bounds variables |
---|
| 1644 | if (!SuperClassWriter::varExist(axisBoundId)) |
---|
| 1645 | { |
---|
| 1646 | dims.clear() ; |
---|
| 1647 | dims.push_back(timeid); |
---|
| 1648 | dims.push_back(timeBoundId); |
---|
| 1649 | SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims); |
---|
| 1650 | } |
---|
[488] | 1651 | |
---|
[498] | 1652 | // Adding time_counter |
---|
| 1653 | axisid = "time_counter" ; |
---|
| 1654 | axisBoundId = "time_counter_bounds" ; |
---|
| 1655 | dims.clear() ; |
---|
| 1656 | dims.push_back(timeid); |
---|
| 1657 | if (!SuperClassWriter::varExist(axisid)) |
---|
| 1658 | { |
---|
| 1659 | SuperClassWriter::addVariable(axisid, NC_DOUBLE, dims); |
---|
| 1660 | SuperClassWriter::addAttribute("axis", string("T"), &axisid); |
---|
| 1661 | CDate timeOrigin=cal->getTimeOrigin() ; |
---|
| 1662 | StdString strTimeOrigin=timeOrigin.toString() ; |
---|
[488] | 1663 | |
---|
[498] | 1664 | this->writeTimeAxisAttributes |
---|
| 1665 | (axisid, cal->getType(), |
---|
| 1666 | StdString("seconds since ").append(strTimeOrigin), |
---|
| 1667 | strTimeOrigin, axisBoundId); |
---|
| 1668 | } |
---|
| 1669 | |
---|
| 1670 | // Adding time_counter_bound dimension |
---|
| 1671 | if (!SuperClassWriter::varExist(axisBoundId)) |
---|
| 1672 | { |
---|
| 1673 | dims.clear(); |
---|
| 1674 | dims.push_back(timeid); |
---|
| 1675 | dims.push_back(timeBoundId); |
---|
| 1676 | SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims); |
---|
| 1677 | } |
---|
[488] | 1678 | } |
---|
[498] | 1679 | catch (CNetCdfException& e) |
---|
[488] | 1680 | { |
---|
[498] | 1681 | StdString msg("On writing time axis data: "); |
---|
| 1682 | msg.append("In the context : "); |
---|
| 1683 | CContext* context = CContext::getCurrent() ; |
---|
| 1684 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1685 | msg.append(e.what()); |
---|
| 1686 | ERROR("CNc4DataOutput::writeTimeAxis_ (CField* field, \ |
---|
| 1687 | const boost::shared_ptr<CCalendar> cal)", << msg); |
---|
[488] | 1688 | } |
---|
[219] | 1689 | } |
---|
| 1690 | |
---|
| 1691 | //--------------------------------------------------------------- |
---|
[488] | 1692 | |
---|
[219] | 1693 | void CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, |
---|
| 1694 | const StdString & calendar, |
---|
| 1695 | const StdString & units, |
---|
| 1696 | const StdString & time_origin, |
---|
[488] | 1697 | const StdString & time_bounds, |
---|
[219] | 1698 | const StdString & standard_name, |
---|
[613] | 1699 | const StdString & long_name) |
---|
[219] | 1700 | { |
---|
[498] | 1701 | try |
---|
| 1702 | { |
---|
| 1703 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
---|
| 1704 | SuperClassWriter::addAttribute("long_name", long_name , &axis_name); |
---|
| 1705 | SuperClassWriter::addAttribute("calendar", calendar , &axis_name); |
---|
| 1706 | SuperClassWriter::addAttribute("units", units , &axis_name); |
---|
| 1707 | SuperClassWriter::addAttribute("time_origin", time_origin , &axis_name); |
---|
| 1708 | SuperClassWriter::addAttribute("bounds", time_bounds , &axis_name); |
---|
| 1709 | } |
---|
| 1710 | catch (CNetCdfException& e) |
---|
| 1711 | { |
---|
| 1712 | StdString msg("On writing time axis Attribute: "); |
---|
| 1713 | msg.append("In the context : "); |
---|
| 1714 | CContext* context = CContext::getCurrent() ; |
---|
| 1715 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1716 | msg.append(e.what()); |
---|
| 1717 | ERROR("CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, \ |
---|
[613] | 1718 | const StdString & calendar,\ |
---|
| 1719 | const StdString & units, \ |
---|
| 1720 | const StdString & time_origin, \ |
---|
| 1721 | const StdString & time_bounds, \ |
---|
| 1722 | const StdString & standard_name, \ |
---|
| 1723 | const StdString & long_name)", << msg); |
---|
[498] | 1724 | } |
---|
[219] | 1725 | } |
---|
[488] | 1726 | |
---|
[219] | 1727 | //--------------------------------------------------------------- |
---|
| 1728 | |
---|
| 1729 | void CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, |
---|
| 1730 | const StdString & axis, |
---|
| 1731 | const StdString & standard_name, |
---|
| 1732 | const StdString & long_name, |
---|
| 1733 | const StdString & units, |
---|
| 1734 | const StdString & nav_model) |
---|
| 1735 | { |
---|
[498] | 1736 | try |
---|
| 1737 | { |
---|
[613] | 1738 | if (!axis.empty()) |
---|
| 1739 | SuperClassWriter::addAttribute("axis" , axis , &axis_name); |
---|
| 1740 | |
---|
[498] | 1741 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
---|
| 1742 | SuperClassWriter::addAttribute("long_name" , long_name , &axis_name); |
---|
| 1743 | SuperClassWriter::addAttribute("units" , units , &axis_name); |
---|
| 1744 | SuperClassWriter::addAttribute("nav_model" , nav_model , &axis_name); |
---|
| 1745 | } |
---|
| 1746 | catch (CNetCdfException& e) |
---|
| 1747 | { |
---|
| 1748 | StdString msg("On writing Axis Attribute: "); |
---|
| 1749 | msg.append("In the context : "); |
---|
| 1750 | CContext* context = CContext::getCurrent() ; |
---|
| 1751 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1752 | msg.append(e.what()); |
---|
| 1753 | ERROR("CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, \ |
---|
[613] | 1754 | const StdString & axis, \ |
---|
| 1755 | const StdString & standard_name, \ |
---|
| 1756 | const StdString & long_name, \ |
---|
| 1757 | const StdString & units, \ |
---|
| 1758 | const StdString & nav_model)", << msg); |
---|
[498] | 1759 | } |
---|
[219] | 1760 | } |
---|
| 1761 | |
---|
| 1762 | //--------------------------------------------------------------- |
---|
[488] | 1763 | |
---|
[219] | 1764 | void CNc4DataOutput::writeLocalAttributes |
---|
| 1765 | (int ibegin, int ni, int jbegin, int nj, StdString domid) |
---|
| 1766 | { |
---|
[498] | 1767 | try |
---|
| 1768 | { |
---|
[318] | 1769 | SuperClassWriter::addAttribute(StdString("ibegin").append(domid), ibegin); |
---|
| 1770 | SuperClassWriter::addAttribute(StdString("ni" ).append(domid), ni); |
---|
| 1771 | SuperClassWriter::addAttribute(StdString("jbegin").append(domid), jbegin); |
---|
| 1772 | SuperClassWriter::addAttribute(StdString("nj" ).append(domid), nj); |
---|
[498] | 1773 | } |
---|
| 1774 | catch (CNetCdfException& e) |
---|
| 1775 | { |
---|
| 1776 | StdString msg("On writing Local Attributes: "); |
---|
| 1777 | msg.append("In the context : "); |
---|
| 1778 | CContext* context = CContext::getCurrent() ; |
---|
| 1779 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1780 | msg.append(e.what()); |
---|
| 1781 | ERROR("CNc4DataOutput::writeLocalAttributes \ |
---|
| 1782 | (int ibegin, int ni, int jbegin, int nj, StdString domid)", << msg); |
---|
| 1783 | } |
---|
| 1784 | |
---|
[219] | 1785 | } |
---|
| 1786 | |
---|
[628] | 1787 | void CNc4DataOutput::writeLocalAttributes_IOIPSL(const StdString& dimXid, const StdString& dimYid, |
---|
| 1788 | int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size) |
---|
[391] | 1789 | { |
---|
| 1790 | CArray<int,1> array(2) ; |
---|
| 1791 | |
---|
[498] | 1792 | try |
---|
| 1793 | { |
---|
| 1794 | SuperClassWriter::addAttribute("DOMAIN_number_total",size ) ; |
---|
| 1795 | SuperClassWriter::addAttribute("DOMAIN_number", rank) ; |
---|
[629] | 1796 | array = SuperClassWriter::getDimension(dimXid) + 1, SuperClassWriter::getDimension(dimYid) + 1; |
---|
[498] | 1797 | SuperClassWriter::addAttribute("DOMAIN_dimensions_ids",array) ; |
---|
| 1798 | array=ni_glo,nj_glo ; |
---|
| 1799 | SuperClassWriter::addAttribute("DOMAIN_size_global", array) ; |
---|
| 1800 | array=ni,nj ; |
---|
| 1801 | SuperClassWriter::addAttribute("DOMAIN_size_local", array) ; |
---|
| 1802 | array=ibegin,jbegin ; |
---|
| 1803 | SuperClassWriter::addAttribute("DOMAIN_position_first", array) ; |
---|
| 1804 | array=ibegin+ni-1,jbegin+nj-1 ; |
---|
| 1805 | SuperClassWriter::addAttribute("DOMAIN_position_last",array) ; |
---|
| 1806 | array=0,0 ; |
---|
| 1807 | SuperClassWriter::addAttribute("DOMAIN_halo_size_start", array) ; |
---|
| 1808 | SuperClassWriter::addAttribute("DOMAIN_halo_size_end", array); |
---|
| 1809 | SuperClassWriter::addAttribute("DOMAIN_type",string("box")) ; |
---|
| 1810 | /* |
---|
| 1811 | SuperClassWriter::addAttribute("DOMAIN_DIM_N001",string("x")) ; |
---|
| 1812 | SuperClassWriter::addAttribute("DOMAIN_DIM_N002",string("y")) ; |
---|
| 1813 | SuperClassWriter::addAttribute("DOMAIN_DIM_N003",string("axis_A")) ; |
---|
| 1814 | SuperClassWriter::addAttribute("DOMAIN_DIM_N004",string("time_counter")) ; |
---|
| 1815 | */ |
---|
| 1816 | } |
---|
| 1817 | catch (CNetCdfException& e) |
---|
| 1818 | { |
---|
[628] | 1819 | StdString msg("On writing Local Attributes IOIPSL \n"); |
---|
[498] | 1820 | msg.append("In the context : "); |
---|
| 1821 | CContext* context = CContext::getCurrent() ; |
---|
| 1822 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1823 | msg.append(e.what()); |
---|
| 1824 | ERROR("CNc4DataOutput::writeLocalAttributes_IOIPSL \ |
---|
| 1825 | (int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)", << msg); |
---|
| 1826 | } |
---|
[391] | 1827 | } |
---|
[219] | 1828 | //--------------------------------------------------------------- |
---|
| 1829 | |
---|
| 1830 | void CNc4DataOutput:: writeFileAttributes(const StdString & name, |
---|
| 1831 | const StdString & description, |
---|
| 1832 | const StdString & conventions, |
---|
| 1833 | const StdString & production, |
---|
| 1834 | const StdString & timeStamp) |
---|
| 1835 | { |
---|
[498] | 1836 | try |
---|
| 1837 | { |
---|
| 1838 | SuperClassWriter::addAttribute("name" , name); |
---|
| 1839 | SuperClassWriter::addAttribute("description", description); |
---|
[613] | 1840 | SuperClassWriter::addAttribute("title" , description); |
---|
| 1841 | SuperClassWriter::addAttribute("Conventions", conventions); |
---|
[498] | 1842 | SuperClassWriter::addAttribute("production" , production); |
---|
| 1843 | SuperClassWriter::addAttribute("timeStamp" , timeStamp); |
---|
| 1844 | } |
---|
| 1845 | catch (CNetCdfException& e) |
---|
| 1846 | { |
---|
| 1847 | StdString msg("On writing File Attributes \n "); |
---|
| 1848 | msg.append("In the context : "); |
---|
| 1849 | CContext* context = CContext::getCurrent() ; |
---|
| 1850 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1851 | msg.append(e.what()); |
---|
| 1852 | ERROR("CNc4DataOutput:: writeFileAttributes(const StdString & name, \ |
---|
| 1853 | const StdString & description, \ |
---|
| 1854 | const StdString & conventions, \ |
---|
| 1855 | const StdString & production, \ |
---|
| 1856 | const StdString & timeStamp)", << msg); |
---|
| 1857 | } |
---|
[219] | 1858 | } |
---|
| 1859 | |
---|
| 1860 | //--------------------------------------------------------------- |
---|
| 1861 | |
---|
| 1862 | void CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, |
---|
| 1863 | int data_dim, |
---|
| 1864 | int data_ni, |
---|
| 1865 | int data_nj, |
---|
| 1866 | int data_ibegin, |
---|
| 1867 | int data_jbegin) |
---|
| 1868 | { |
---|
[498] | 1869 | try |
---|
| 1870 | { |
---|
| 1871 | SuperClassWriter::addAttribute("data_dim" , data_dim , &mask_name); |
---|
| 1872 | SuperClassWriter::addAttribute("data_ni" , data_ni , &mask_name); |
---|
| 1873 | SuperClassWriter::addAttribute("data_nj" , data_nj , &mask_name); |
---|
| 1874 | SuperClassWriter::addAttribute("data_ibegin", data_ibegin, &mask_name); |
---|
| 1875 | SuperClassWriter::addAttribute("data_jbegin", data_jbegin, &mask_name); |
---|
| 1876 | } |
---|
| 1877 | catch (CNetCdfException& e) |
---|
| 1878 | { |
---|
| 1879 | StdString msg("On writing Mask Attributes \n "); |
---|
| 1880 | msg.append("In the context : "); |
---|
| 1881 | CContext* context = CContext::getCurrent() ; |
---|
| 1882 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1883 | msg.append(e.what()); |
---|
| 1884 | ERROR("CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, \ |
---|
| 1885 | int data_dim, \ |
---|
| 1886 | int data_ni, \ |
---|
| 1887 | int data_nj, \ |
---|
| 1888 | int data_ibegin, \ |
---|
| 1889 | int data_jbegin)", << msg); |
---|
| 1890 | } |
---|
[219] | 1891 | } |
---|
| 1892 | |
---|
| 1893 | ///-------------------------------------------------------------- |
---|
| 1894 | |
---|
[335] | 1895 | } // namespace xios |
---|