1 | |
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2 | #include "nc4_data_output.hpp" |
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3 | |
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4 | #include <boost/lexical_cast.hpp> |
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5 | #include "attribute_template.hpp" |
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6 | #include "group_template.hpp" |
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7 | |
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8 | #include "file.hpp" |
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9 | #include "calendar.hpp" |
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10 | #include "context.hpp" |
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11 | #include "context_server.hpp" |
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12 | #include "netCdfException.hpp" |
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13 | #include "exception.hpp" |
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14 | |
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15 | namespace xios |
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16 | { |
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17 | /// ////////////////////// Définitions ////////////////////// /// |
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18 | CNc4DataOutput::CNc4DataOutput |
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19 | (const StdString & filename, bool exist) |
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20 | : SuperClass() |
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21 | , SuperClassWriter(filename, exist) |
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22 | , filename(filename) |
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23 | { |
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24 | StdString timeid = StdString("time_counter"); |
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25 | SuperClass::type = MULTI_FILE; |
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26 | } |
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27 | |
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28 | CNc4DataOutput::CNc4DataOutput |
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29 | (const StdString & filename, bool exist, bool useClassicFormat, |
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30 | MPI_Comm comm_file,bool multifile, bool isCollective) |
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31 | : SuperClass() |
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32 | , SuperClassWriter(filename, exist, useClassicFormat, &comm_file, multifile) |
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33 | , comm_file(comm_file) |
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34 | , filename(filename) |
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35 | , isCollective(isCollective) |
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36 | { |
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37 | StdString timeid = StdString("time_counter"); |
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38 | |
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39 | SuperClass::type = (multifile) ? MULTI_FILE : ONE_FILE; |
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40 | } |
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41 | |
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42 | |
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43 | CNc4DataOutput::~CNc4DataOutput(void) |
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44 | { /* Ne rien faire de plus */ } |
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45 | |
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46 | ///-------------------------------------------------------------- |
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47 | |
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48 | const StdString & CNc4DataOutput::getFileName(void) const |
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49 | { |
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50 | return (this->filename); |
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51 | } |
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52 | |
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53 | //--------------------------------------------------------------- |
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54 | |
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55 | void CNc4DataOutput::writeDomain_(CDomain* domain) |
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56 | { |
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57 | if (domain->type == CDomain::type_attr::unstructured) |
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58 | { |
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59 | writeUnstructuredDomain(domain) ; |
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60 | return ; |
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61 | } |
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62 | |
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63 | CContext* context = CContext::getCurrent() ; |
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64 | CContextServer* server=context->server ; |
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65 | |
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66 | if (domain->IsWritten(this->filename)) return; |
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67 | domain->checkAttributes(); |
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68 | |
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69 | if (domain->isEmpty()) |
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70 | if (SuperClass::type==MULTI_FILE) return ; |
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71 | |
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72 | std::vector<StdString> dim0, dim1; |
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73 | StdString domid = (!domain->name.isEmpty()) |
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74 | ? domain->name.getValue() : domain->getId(); |
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75 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
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76 | if (isWrittenDomain(domid)) return ; |
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77 | else writtenDomains.insert(domid) ; |
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78 | |
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79 | |
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80 | StdString dimXid, dimYid ; |
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81 | |
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82 | bool isRegularDomain = (domain->type == CDomain::type_attr::rectilinear); |
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83 | switch (domain->type) |
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84 | { |
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85 | case CDomain::type_attr::curvilinear : |
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86 | dimXid = StdString("x").append(appendDomid); |
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87 | dimYid = StdString("y").append(appendDomid); |
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88 | break ; |
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89 | case CDomain::type_attr::rectilinear : |
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90 | dimXid = StdString("lon").append(appendDomid); |
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91 | dimYid = StdString("lat").append(appendDomid); |
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92 | break; |
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93 | } |
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94 | |
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95 | StdString dimVertId = StdString("nvertex").append(appendDomid); |
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96 | |
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97 | string lonid,latid,bounds_lonid,bounds_latid ; |
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98 | string areaId = "area" + appendDomid; |
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99 | /* |
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100 | StdString lonid_loc = (server->intraCommSize > 1) |
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101 | ? StdString("lon").append(appendDomid).append("_local") |
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102 | : lonid; |
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103 | StdString latid_loc = (server->intraCommSize > 1) |
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104 | ? StdString("lat").append(appendDomid).append("_local") |
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105 | : latid; |
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106 | */ |
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107 | |
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108 | try |
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109 | { |
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110 | switch (SuperClass::type) |
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111 | { |
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112 | case (MULTI_FILE) : |
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113 | { |
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114 | // if (domain->isEmpty()) return; |
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115 | |
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116 | if (server->intraCommSize > 1) |
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117 | { |
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118 | // SuperClassWriter::addDimension(lonid, domain->zoom_ni.getValue()); |
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119 | // SuperClassWriter::addDimension(latid, domain->zoom_nj.getValue()); |
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120 | } |
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121 | |
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122 | switch (domain->type) |
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123 | { |
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124 | case CDomain::type_attr::curvilinear : |
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125 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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126 | lonid = StdString("nav_lon").append(appendDomid); |
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127 | latid = StdString("nav_lat").append(appendDomid); |
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128 | break ; |
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129 | case CDomain::type_attr::rectilinear : |
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130 | lonid = StdString("lon").append(appendDomid); |
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131 | latid = StdString("lat").append(appendDomid); |
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132 | dim0.push_back(dimYid); |
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133 | dim1.push_back(dimXid); |
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134 | break; |
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135 | } |
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136 | |
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137 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
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138 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
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139 | |
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140 | SuperClassWriter::addDimension(dimXid, domain->zoom_ni_srv); |
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141 | SuperClassWriter::addDimension(dimYid, domain->zoom_nj_srv); |
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142 | |
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143 | if (domain->hasBounds) |
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144 | SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
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145 | |
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146 | if (server->intraCommSize > 1) |
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147 | { |
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148 | this->writeLocalAttributes(domain->zoom_ibegin_srv, |
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149 | domain->zoom_ni_srv, |
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150 | domain->zoom_jbegin_srv, |
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151 | domain->zoom_nj_srv, |
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152 | appendDomid); |
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153 | |
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154 | if (singleDomain) |
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155 | this->writeLocalAttributes_IOIPSL(dimXid, dimYid, |
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156 | domain->zoom_ibegin_srv, |
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157 | domain->zoom_ni_srv, |
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158 | domain->zoom_jbegin_srv, |
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159 | domain->zoom_nj_srv, |
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160 | domain->ni_glo,domain->nj_glo, |
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161 | server->intraCommRank,server->intraCommSize); |
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162 | } |
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163 | |
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164 | if (domain->hasLonLat) |
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165 | { |
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166 | switch (domain->type) |
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167 | { |
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168 | case CDomain::type_attr::curvilinear : |
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169 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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170 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
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171 | break ; |
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172 | case CDomain::type_attr::rectilinear : |
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173 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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174 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim1); |
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175 | break ; |
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176 | } |
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177 | |
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178 | this->writeAxisAttributes(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid); |
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179 | this->writeAxisAttributes(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid); |
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180 | |
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181 | if (domain->hasBounds) |
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182 | { |
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183 | SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid); |
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184 | SuperClassWriter::addAttribute("bounds", bounds_latid, &latid); |
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185 | |
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186 | dim0.clear(); |
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187 | dim0.push_back(dimYid); |
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188 | dim0.push_back(dimXid); |
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189 | dim0.push_back(dimVertId); |
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190 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
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191 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
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192 | } |
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193 | } |
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194 | |
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195 | dim0.clear(); |
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196 | dim0.push_back(dimYid); |
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197 | dim0.push_back(dimXid); |
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198 | |
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199 | |
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200 | // supress mask if (server->intraCommSize > 1) |
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201 | // supress mask { |
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202 | // supress mask SuperClassWriter::addVariable(maskid, NC_INT, dim0); |
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203 | // supress mask |
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204 | // supress mask this->writeMaskAttributes(maskid, |
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205 | // supress mask domain->data_dim.getValue()/*, |
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206 | // supress mask domain->data_ni.getValue(), |
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207 | // supress mask domain->data_nj.getValue(), |
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208 | // supress mask domain->data_ibegin.getValue(), |
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209 | // supress mask domain->data_jbegin.getValue()*/); |
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210 | // supress mask } |
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211 | |
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212 | //SuperClassWriter::setDefaultValue(maskid, &dvm); |
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213 | |
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214 | if (domain->hasArea) |
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215 | { |
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216 | SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0); |
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217 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
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218 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
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219 | } |
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220 | |
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221 | SuperClassWriter::definition_end(); |
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222 | |
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223 | if (domain->hasLonLat) |
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224 | { |
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225 | switch (domain->type) |
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226 | { |
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227 | case CDomain::type_attr::curvilinear : |
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228 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0); |
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229 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0); |
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230 | break; |
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231 | case CDomain::type_attr::rectilinear : |
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232 | CArray<double,1> lat = domain->latvalue_srv(Range(fromStart,toEnd,domain->zoom_ni_srv)) ; |
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233 | SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0); |
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234 | CArray<double,1> lon=domain->lonvalue_srv(Range(0,domain->zoom_ni_srv-1)) ; |
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235 | SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0); |
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236 | break; |
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237 | } |
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238 | |
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239 | if (domain->hasBounds) |
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240 | { |
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241 | SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0); |
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242 | SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0); |
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243 | } |
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244 | } |
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245 | |
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246 | if (domain->hasArea) |
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247 | SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0); |
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248 | |
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249 | SuperClassWriter::definition_start(); |
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250 | |
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251 | break; |
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252 | } |
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253 | case (ONE_FILE) : |
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254 | { |
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255 | SuperClassWriter::addDimension(dimXid, domain->global_zoom_ni); |
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256 | SuperClassWriter::addDimension(dimYid, domain->global_zoom_nj); |
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257 | |
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258 | if (domain->hasBounds) |
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259 | SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
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260 | |
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261 | if (domain->hasLonLat) |
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262 | { |
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263 | switch (domain->type) |
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264 | { |
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265 | case CDomain::type_attr::curvilinear : |
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266 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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267 | lonid = StdString("nav_lon").append(appendDomid); |
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268 | latid = StdString("nav_lat").append(appendDomid); |
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269 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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270 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
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271 | break; |
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272 | |
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273 | case CDomain::type_attr::rectilinear : |
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274 | dim0.push_back(dimYid); |
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275 | dim1.push_back(dimXid); |
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276 | lonid = StdString("lon").append(appendDomid); |
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277 | latid = StdString("lat").append(appendDomid); |
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278 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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279 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim1); |
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280 | break; |
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281 | } |
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282 | |
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283 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
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284 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
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285 | |
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286 | this->writeAxisAttributes |
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287 | (lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid); |
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288 | this->writeAxisAttributes |
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289 | (latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid); |
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290 | |
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291 | if (domain->hasBounds) |
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292 | { |
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293 | SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid); |
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294 | SuperClassWriter::addAttribute("bounds", bounds_latid, &latid); |
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295 | |
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296 | dim0.clear(); |
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297 | dim0.push_back(dimYid); |
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298 | dim0.push_back(dimXid); |
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299 | dim0.push_back(dimVertId); |
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300 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
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301 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
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302 | } |
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303 | } |
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304 | |
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305 | if (domain->hasArea) |
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306 | { |
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307 | dim0.clear(); |
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308 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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309 | SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0); |
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310 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
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311 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
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312 | dim0.clear(); |
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313 | } |
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314 | |
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315 | SuperClassWriter::definition_end(); |
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316 | |
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317 | switch (domain->type) |
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318 | { |
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319 | case CDomain::type_attr::curvilinear : |
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320 | { |
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321 | std::vector<StdSize> start(2) ; |
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322 | std::vector<StdSize> count(2) ; |
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323 | if (domain->isEmpty()) |
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324 | { |
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325 | start[0]=0 ; start[1]=0 ; |
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326 | count[0]=0 ; count[1]=0 ; |
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327 | } |
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328 | else |
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329 | { |
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330 | start[1]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
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331 | start[0]=domain->zoom_jbegin_srv-domain->global_zoom_jbegin; |
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332 | count[1]=domain->zoom_ni_srv ; count[0]=domain->zoom_nj_srv ; |
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333 | } |
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334 | |
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335 | if (domain->hasLonLat) |
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336 | { |
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337 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count); |
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338 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count); |
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339 | } |
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340 | break; |
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341 | } |
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342 | case CDomain::type_attr::rectilinear : |
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343 | { |
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344 | if (domain->hasLonLat) |
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345 | { |
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346 | std::vector<StdSize> start(1) ; |
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347 | std::vector<StdSize> count(1) ; |
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348 | if (domain->isEmpty()) |
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349 | { |
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350 | start[0]=0 ; |
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351 | count[0]=0 ; |
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352 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count); |
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353 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count); |
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354 | |
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355 | } |
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356 | else |
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357 | { |
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358 | start[0]=domain->zoom_jbegin_srv-domain->global_zoom_jbegin; |
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359 | count[0]=domain->zoom_nj_srv ; |
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360 | CArray<double,1> lat = domain->latvalue_srv(Range(fromStart,toEnd,domain->zoom_ni_srv)) ; |
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361 | SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0,&start,&count); |
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362 | |
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363 | start[0]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
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364 | count[0]=domain->zoom_ni_srv ; |
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365 | CArray<double,1> lon=domain->lonvalue_srv(Range(0,domain->zoom_ni_srv-1)) ; |
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366 | SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0,&start,&count); |
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367 | } |
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368 | } |
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369 | break; |
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370 | } |
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371 | } |
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372 | |
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373 | if (domain->hasBounds) |
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374 | { |
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375 | std::vector<StdSize> start(3); |
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376 | std::vector<StdSize> count(3); |
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377 | if (domain->isEmpty()) |
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378 | { |
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379 | start[2] = start[1] = start[0] = 0; |
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380 | count[2] = count[1] = count[0] = 0; |
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381 | } |
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382 | else |
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383 | { |
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384 | start[2] = 0; |
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385 | start[1] = domain->zoom_ibegin_srv - domain->global_zoom_ibegin; |
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386 | start[0] = domain->zoom_jbegin_srv - domain->global_zoom_jbegin; |
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387 | count[2] = domain->nvertex; |
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388 | count[1] = domain->zoom_ni_srv; |
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389 | count[0] = domain->zoom_nj_srv; |
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390 | } |
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391 | |
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392 | SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0, &start, &count); |
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393 | SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0, &start, &count); |
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394 | } |
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395 | |
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396 | if (domain->hasArea) |
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397 | { |
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398 | std::vector<StdSize> start(2); |
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399 | std::vector<StdSize> count(2); |
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400 | |
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401 | if (domain->isEmpty()) |
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402 | { |
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403 | start[0] = 0; start[1] = 0; |
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404 | count[0] = 0; count[1] = 0; |
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405 | } |
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406 | else |
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407 | { |
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408 | start[1] = domain->zoom_ibegin_srv - domain->global_zoom_ibegin; |
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409 | start[0] = domain->zoom_jbegin_srv - domain->global_zoom_jbegin; |
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410 | count[1] = domain->zoom_ni_srv; |
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411 | count[0] = domain->zoom_nj_srv; |
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412 | } |
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413 | |
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414 | SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0, &start, &count); |
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415 | } |
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416 | |
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417 | SuperClassWriter::definition_start(); |
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418 | break; |
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419 | } |
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420 | default : |
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421 | ERROR("CNc4DataOutput::writeDomain(domain)", |
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422 | << "[ type = " << SuperClass::type << "]" |
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423 | << " not implemented yet !"); |
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424 | } |
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425 | } |
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426 | catch (CNetCdfException& e) |
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427 | { |
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428 | StdString msg("On writing the domain : "); |
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429 | msg.append(domid); msg.append("\n"); |
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430 | msg.append("In the context : "); |
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431 | msg.append(context->getId()); msg.append("\n"); |
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432 | msg.append(e.what()); |
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433 | ERROR("CNc4DataOutput::writeDomain_(CDomain* domain)", << msg); |
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434 | } |
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435 | |
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436 | domain->addRelFile(this->filename); |
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437 | } |
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438 | |
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439 | void CNc4DataOutput::writeUnstructuredDomain(CDomain* domain) |
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440 | { |
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441 | CContext* context = CContext::getCurrent() ; |
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442 | CContextServer* server=context->server ; |
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443 | |
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444 | if (domain->IsWritten(this->filename)) return; |
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445 | domain->checkAttributes(); |
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446 | |
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447 | if (domain->isEmpty()) |
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448 | if (SuperClass::type==MULTI_FILE) return ; |
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449 | |
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450 | std::vector<StdString> dim0, dim1; |
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451 | StdString domid = (!domain->name.isEmpty()) |
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452 | ? domain->name.getValue() : domain->getId(); |
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453 | if (isWrittenDomain(domid)) return ; |
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454 | else writtenDomains.insert(domid) ; |
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455 | |
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456 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
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457 | |
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458 | |
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459 | StdString dimXid = StdString("cell").append(appendDomid); |
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460 | StdString dimVertId = StdString("nvertex").append(appendDomid); |
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461 | |
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462 | string lonid,latid,bounds_lonid,bounds_latid ; |
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463 | string areaId = "area" + appendDomid; |
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464 | |
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465 | try |
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466 | { |
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467 | switch (SuperClass::type) |
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468 | { |
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469 | case (MULTI_FILE) : |
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470 | { |
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471 | dim0.push_back(dimXid); |
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472 | SuperClassWriter::addDimension(dimXid, domain->zoom_ni_srv); |
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473 | |
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474 | lonid = StdString("lon").append(appendDomid); |
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475 | latid = StdString("lat").append(appendDomid); |
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476 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
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477 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
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478 | if (domain->hasLonLat) |
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479 | { |
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480 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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481 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
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482 | this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid); |
---|
483 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid); |
---|
484 | this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid); |
---|
485 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid); |
---|
486 | if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
---|
487 | } |
---|
488 | |
---|
489 | dim0.clear(); |
---|
490 | if (domain->hasBounds) |
---|
491 | { |
---|
492 | dim0.push_back(dimXid); |
---|
493 | dim0.push_back(dimVertId); |
---|
494 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
---|
495 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
---|
496 | } |
---|
497 | |
---|
498 | dim0.clear(); |
---|
499 | dim0.push_back(dimXid); |
---|
500 | if (domain->hasArea) |
---|
501 | { |
---|
502 | SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0); |
---|
503 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
---|
504 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
---|
505 | } |
---|
506 | |
---|
507 | SuperClassWriter::definition_end(); |
---|
508 | |
---|
509 | if (domain->hasLonLat) |
---|
510 | { |
---|
511 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0); |
---|
512 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0); |
---|
513 | if (domain->hasBounds) |
---|
514 | { |
---|
515 | SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0); |
---|
516 | SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0); |
---|
517 | } |
---|
518 | } |
---|
519 | |
---|
520 | if (domain->hasArea) |
---|
521 | SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0); |
---|
522 | |
---|
523 | SuperClassWriter::definition_start(); |
---|
524 | break ; |
---|
525 | } |
---|
526 | |
---|
527 | case (ONE_FILE) : |
---|
528 | { |
---|
529 | lonid = StdString("lon").append(appendDomid); |
---|
530 | latid = StdString("lat").append(appendDomid); |
---|
531 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
---|
532 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
---|
533 | dim0.push_back(dimXid); |
---|
534 | SuperClassWriter::addDimension(dimXid, domain->ni_glo); |
---|
535 | if (domain->hasLonLat) |
---|
536 | { |
---|
537 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
---|
538 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
---|
539 | |
---|
540 | this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid); |
---|
541 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid); |
---|
542 | this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid); |
---|
543 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid); |
---|
544 | if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
---|
545 | } |
---|
546 | dim0.clear(); |
---|
547 | |
---|
548 | if (domain->hasBounds) |
---|
549 | { |
---|
550 | dim0.push_back(dimXid); |
---|
551 | dim0.push_back(dimVertId); |
---|
552 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
---|
553 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
---|
554 | } |
---|
555 | |
---|
556 | if (domain->hasArea) |
---|
557 | { |
---|
558 | dim0.clear(); |
---|
559 | dim0.push_back(dimXid); |
---|
560 | SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0); |
---|
561 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
---|
562 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
---|
563 | } |
---|
564 | |
---|
565 | SuperClassWriter::definition_end(); |
---|
566 | |
---|
567 | std::vector<StdSize> start(1), startBounds(2) ; |
---|
568 | std::vector<StdSize> count(1), countBounds(2) ; |
---|
569 | if (domain->isEmpty()) |
---|
570 | { |
---|
571 | start[0]=0 ; |
---|
572 | count[0]=0 ; |
---|
573 | startBounds[1]=0 ; |
---|
574 | countBounds[1]=domain->nvertex ; |
---|
575 | startBounds[0]=0 ; |
---|
576 | countBounds[0]=0 ; |
---|
577 | } |
---|
578 | else |
---|
579 | { |
---|
580 | start[0]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
581 | count[0]=domain->zoom_ni_srv ; |
---|
582 | startBounds[0]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
583 | startBounds[1]=0 ; |
---|
584 | countBounds[0]=domain->zoom_ni_srv ; |
---|
585 | countBounds[1]=domain->nvertex ; |
---|
586 | } |
---|
587 | |
---|
588 | if (domain->hasLonLat) |
---|
589 | { |
---|
590 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count); |
---|
591 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count); |
---|
592 | if (domain->hasBounds) |
---|
593 | { |
---|
594 | SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0,&startBounds,&countBounds); |
---|
595 | SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0,&startBounds,&countBounds); |
---|
596 | } |
---|
597 | } |
---|
598 | |
---|
599 | if (domain->hasArea) |
---|
600 | SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0, &start, &count); |
---|
601 | |
---|
602 | SuperClassWriter::definition_start(); |
---|
603 | |
---|
604 | break; |
---|
605 | } |
---|
606 | default : |
---|
607 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
608 | << "[ type = " << SuperClass::type << "]" |
---|
609 | << " not implemented yet !"); |
---|
610 | } |
---|
611 | } |
---|
612 | catch (CNetCdfException& e) |
---|
613 | { |
---|
614 | StdString msg("On writing the domain : "); |
---|
615 | msg.append(domid); msg.append("\n"); |
---|
616 | msg.append("In the context : "); |
---|
617 | msg.append(context->getId()); msg.append("\n"); |
---|
618 | msg.append(e.what()); |
---|
619 | ERROR("CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)", << msg); |
---|
620 | } |
---|
621 | domain->addRelFile(this->filename); |
---|
622 | } |
---|
623 | //-------------------------------------------------------------- |
---|
624 | |
---|
625 | void CNc4DataOutput::writeAxis_(CAxis* axis) |
---|
626 | { |
---|
627 | if (axis->IsWritten(this->filename)) return; |
---|
628 | axis->checkAttributes(); |
---|
629 | int zoom_size_srv = axis->zoom_size_srv; |
---|
630 | int zoom_begin_srv = axis->zoom_begin_srv; |
---|
631 | int zoom_size = (MULTI_FILE == SuperClass::type) ? zoom_size_srv |
---|
632 | : axis->global_zoom_size; |
---|
633 | int zoom_begin = (MULTI_FILE == SuperClass::type) ? zoom_begin_srv |
---|
634 | : axis->global_zoom_begin; |
---|
635 | |
---|
636 | if ((0 == zoom_size_srv) && (MULTI_FILE == SuperClass::type)) return; |
---|
637 | |
---|
638 | std::vector<StdString> dims; |
---|
639 | StdString axisid = !axis->name.isEmpty() ? axis->name.getValue() : axis->getId(); |
---|
640 | if (isWrittenAxis(axisid)) return ; |
---|
641 | else writtenAxis.insert(axisid) ; |
---|
642 | |
---|
643 | try |
---|
644 | { |
---|
645 | SuperClassWriter::addDimension(axisid, zoom_size); |
---|
646 | dims.push_back(axisid); |
---|
647 | SuperClassWriter::addVariable(axisid, NC_FLOAT, dims); |
---|
648 | |
---|
649 | if (!axis->name.isEmpty()) |
---|
650 | SuperClassWriter::addAttribute("name", axis->name.getValue(), &axisid); |
---|
651 | |
---|
652 | if (!axis->standard_name.isEmpty()) |
---|
653 | SuperClassWriter::addAttribute("standard_name", axis->standard_name.getValue(), &axisid); |
---|
654 | |
---|
655 | if (!axis->long_name.isEmpty()) |
---|
656 | SuperClassWriter::addAttribute("long_name", axis->long_name.getValue(), &axisid); |
---|
657 | |
---|
658 | if (!axis->unit.isEmpty()) |
---|
659 | SuperClassWriter::addAttribute("units", axis->unit.getValue(), &axisid); |
---|
660 | |
---|
661 | if (!axis->positive.isEmpty()) |
---|
662 | { |
---|
663 | SuperClassWriter::addAttribute("axis", string("Z"), &axisid); |
---|
664 | SuperClassWriter::addAttribute("positive", |
---|
665 | (axis->positive == CAxis::positive_attr::up) ? string("up") : string("down"), |
---|
666 | &axisid); |
---|
667 | } |
---|
668 | |
---|
669 | StdString axisBoundsId = axisid + "_bounds"; |
---|
670 | if (!axis->bounds.isEmpty()) |
---|
671 | { |
---|
672 | dims.push_back("axis_nbounds"); |
---|
673 | SuperClassWriter::addVariable(axisBoundsId, NC_FLOAT, dims); |
---|
674 | SuperClassWriter::addAttribute("bounds", axisBoundsId, &axisid); |
---|
675 | } |
---|
676 | |
---|
677 | SuperClassWriter::definition_end(); |
---|
678 | switch (SuperClass::type) |
---|
679 | { |
---|
680 | case MULTI_FILE: |
---|
681 | { |
---|
682 | CArray<double,1> axis_value(zoom_size_srv); |
---|
683 | for (int i = 0; i < zoom_size_srv; i++) axis_value(i) = axis->value_srv(i); |
---|
684 | SuperClassWriter::writeData(axis_value, axisid, isCollective, 0); |
---|
685 | |
---|
686 | if (!axis->bounds.isEmpty()) |
---|
687 | SuperClassWriter::writeData(axis->bound_srv, axisBoundsId, isCollective, 0); |
---|
688 | |
---|
689 | SuperClassWriter::definition_start(); |
---|
690 | |
---|
691 | break; |
---|
692 | } |
---|
693 | case ONE_FILE: |
---|
694 | { |
---|
695 | CArray<double,1> axis_value(zoom_size_srv); |
---|
696 | axis_value = axis->value_srv; |
---|
697 | |
---|
698 | std::vector<StdSize> start(1) ; |
---|
699 | std::vector<StdSize> count(1) ; |
---|
700 | start[0] = zoom_begin_srv-axis->global_zoom_begin; |
---|
701 | count[0] = zoom_size_srv; |
---|
702 | SuperClassWriter::writeData(axis_value, axisid, isCollective, 0, &start, &count); |
---|
703 | |
---|
704 | if (!axis->bounds.isEmpty()) |
---|
705 | SuperClassWriter::writeData(axis->bound_srv, axisBoundsId, isCollective, 0, &start, &count); |
---|
706 | |
---|
707 | SuperClassWriter::definition_start(); |
---|
708 | |
---|
709 | break; |
---|
710 | } |
---|
711 | default : |
---|
712 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
713 | << "[ type = " << SuperClass::type << "]" |
---|
714 | << " not implemented yet !"); |
---|
715 | } |
---|
716 | } |
---|
717 | catch (CNetCdfException& e) |
---|
718 | { |
---|
719 | StdString msg("On writing the axis : "); |
---|
720 | msg.append(axisid); msg.append("\n"); |
---|
721 | msg.append("In the context : "); |
---|
722 | CContext* context = CContext::getCurrent() ; |
---|
723 | msg.append(context->getId()); msg.append("\n"); |
---|
724 | msg.append(e.what()); |
---|
725 | ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)", << msg); |
---|
726 | } |
---|
727 | axis->addRelFile(this->filename); |
---|
728 | } |
---|
729 | |
---|
730 | //-------------------------------------------------------------- |
---|
731 | |
---|
732 | void CNc4DataOutput::writeGridCompressed_(CGrid* grid) |
---|
733 | { |
---|
734 | if (grid->isScalarGrid() || grid->isWrittenCompressed(this->filename)) return; |
---|
735 | |
---|
736 | try |
---|
737 | { |
---|
738 | CArray<bool,1> axisDomainOrder = grid->axis_domain_order; |
---|
739 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
740 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
741 | int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0; |
---|
742 | |
---|
743 | std::vector<StdString> dims; |
---|
744 | |
---|
745 | if (grid->isCompressible()) |
---|
746 | { |
---|
747 | StdString varId = grid->getId() + "_points"; |
---|
748 | |
---|
749 | int nbIndexes = (SuperClass::type == MULTI_FILE) ? grid->getNumberWrittenIndexes() : grid->getTotalNumberWrittenIndexes(); |
---|
750 | SuperClassWriter::addDimension(varId, nbIndexes); |
---|
751 | |
---|
752 | dims.push_back(varId); |
---|
753 | SuperClassWriter::addVariable(varId, NC_INT, dims); |
---|
754 | |
---|
755 | StdOStringStream compress; |
---|
756 | for (int i = numElement - 1; i >= 0; --i) |
---|
757 | { |
---|
758 | if (axisDomainOrder(i)) |
---|
759 | { |
---|
760 | CDomain* domain = CDomain::get(domainList[domainList.size() - idxDomain - 1]); |
---|
761 | StdString domId = !domain->name.isEmpty() ? domain->name.getValue() : domain->getId(); |
---|
762 | StdString appendDomId = singleDomain ? "" : "_" + domId; |
---|
763 | |
---|
764 | switch (domain->type) |
---|
765 | { |
---|
766 | case CDomain::type_attr::curvilinear: |
---|
767 | compress << "y" << appendDomId << " x" << appendDomId; |
---|
768 | break; |
---|
769 | case CDomain::type_attr::rectilinear: |
---|
770 | compress << "lat" << appendDomId << " lon" << appendDomId; |
---|
771 | break; |
---|
772 | case CDomain::type_attr::unstructured: |
---|
773 | compress << "cell" << appendDomId; |
---|
774 | break; |
---|
775 | } |
---|
776 | ++idxDomain; |
---|
777 | } |
---|
778 | else |
---|
779 | { |
---|
780 | CAxis* axis = CAxis::get(axisList[axisList.size() - idxAxis - 1]); |
---|
781 | compress << (!axis->name.isEmpty() ? axis->name.getValue() : axis->getId()); |
---|
782 | ++idxAxis; |
---|
783 | } |
---|
784 | |
---|
785 | if (i != 0) compress << ' '; |
---|
786 | } |
---|
787 | SuperClassWriter::addAttribute("compress", compress.str(), &varId); |
---|
788 | |
---|
789 | grid->computeCompressedIndex(); |
---|
790 | |
---|
791 | CArray<int, 1> indexes(grid->getNumberWrittenIndexes()); |
---|
792 | std::map<int, CArray<size_t, 1> >::const_iterator it; |
---|
793 | for (it = grid->outIndexFromClient.begin(); it != grid->outIndexFromClient.end(); ++it) |
---|
794 | { |
---|
795 | const CArray<size_t, 1> compressedIndexes = grid->compressedOutIndexFromClient[it->first]; |
---|
796 | for (int i = 0; i < it->second.numElements(); i++) |
---|
797 | indexes(compressedIndexes(i)) = it->second(i); |
---|
798 | } |
---|
799 | |
---|
800 | switch (SuperClass::type) |
---|
801 | { |
---|
802 | case (MULTI_FILE): |
---|
803 | { |
---|
804 | SuperClassWriter::writeData(indexes, varId, isCollective, 0); |
---|
805 | break; |
---|
806 | } |
---|
807 | case (ONE_FILE): |
---|
808 | { |
---|
809 | if (grid->doGridHaveDataDistributed()) |
---|
810 | grid->getDistributionServer()->computeGlobalIndex(indexes); |
---|
811 | |
---|
812 | std::vector<StdSize> start, count; |
---|
813 | start.push_back(grid->getOffsetWrittenIndexes()); |
---|
814 | count.push_back(grid->getNumberWrittenIndexes()); |
---|
815 | |
---|
816 | SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count); |
---|
817 | break; |
---|
818 | } |
---|
819 | } |
---|
820 | } |
---|
821 | else |
---|
822 | { |
---|
823 | for (int i = 0; i < numElement; ++i) |
---|
824 | { |
---|
825 | StdString varId, compress; |
---|
826 | CArray<int, 1> indexes; |
---|
827 | bool isDistributed; |
---|
828 | StdSize nbIndexes, totalNbIndexes, offset; |
---|
829 | int firstGlobalIndex; |
---|
830 | |
---|
831 | if (axisDomainOrder(i)) |
---|
832 | { |
---|
833 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
834 | if (!domain->isCompressible() |
---|
835 | || domain->type == CDomain::type_attr::unstructured |
---|
836 | || domain->isWrittenCompressed(this->filename)) |
---|
837 | continue; |
---|
838 | |
---|
839 | StdString domId = !domain->name.isEmpty() ? domain->name.getValue() : domain->getId(); |
---|
840 | StdString appendDomId = singleDomain ? "" : "_" + domId; |
---|
841 | |
---|
842 | varId = domId + "_points"; |
---|
843 | switch (domain->type) |
---|
844 | { |
---|
845 | case CDomain::type_attr::curvilinear: |
---|
846 | compress = "y" + appendDomId + " x" + appendDomId; |
---|
847 | break; |
---|
848 | case CDomain::type_attr::rectilinear: |
---|
849 | compress = "lat" + appendDomId + " lon" + appendDomId; |
---|
850 | break; |
---|
851 | } |
---|
852 | |
---|
853 | const std::vector<int>& indexesToWrite = domain->getIndexesToWrite(); |
---|
854 | indexes.resize(indexesToWrite.size()); |
---|
855 | for (int n = 0; n < indexes.numElements(); ++n) |
---|
856 | indexes(n) = indexesToWrite[n]; |
---|
857 | |
---|
858 | isDistributed = domain->isDistributed(); |
---|
859 | nbIndexes = domain->getNumberWrittenIndexes(); |
---|
860 | totalNbIndexes = domain->getTotalNumberWrittenIndexes(); |
---|
861 | offset = domain->getOffsetWrittenIndexes(); |
---|
862 | firstGlobalIndex = domain->ibegin + domain->jbegin * domain->ni_glo; |
---|
863 | |
---|
864 | domain->addRelFileCompressed(this->filename); |
---|
865 | ++idxDomain; |
---|
866 | } |
---|
867 | else |
---|
868 | { |
---|
869 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
870 | if (!axis->isCompressible() || axis->isWrittenCompressed(this->filename)) |
---|
871 | continue; |
---|
872 | |
---|
873 | StdString axisId = !axis->name.isEmpty() ? axis->name.getValue() : axis->getId(); |
---|
874 | varId = axisId + "_points"; |
---|
875 | compress = axisId; |
---|
876 | |
---|
877 | const std::vector<int>& indexesToWrite = axis->getIndexesToWrite(); |
---|
878 | indexes.resize(indexesToWrite.size()); |
---|
879 | for (int n = 0; n < indexes.numElements(); ++n) |
---|
880 | indexes(n) = indexesToWrite[n]; |
---|
881 | |
---|
882 | isDistributed = axis->isDistributed(); |
---|
883 | nbIndexes = axis->getNumberWrittenIndexes(); |
---|
884 | totalNbIndexes = axis->getTotalNumberWrittenIndexes(); |
---|
885 | offset = axis->getOffsetWrittenIndexes(); |
---|
886 | firstGlobalIndex = axis->begin; |
---|
887 | |
---|
888 | axis->addRelFileCompressed(this->filename); |
---|
889 | ++idxAxis; |
---|
890 | } |
---|
891 | |
---|
892 | if (!varId.empty()) |
---|
893 | { |
---|
894 | SuperClassWriter::addDimension(varId, (SuperClass::type == MULTI_FILE) ? nbIndexes : totalNbIndexes); |
---|
895 | |
---|
896 | dims.clear(); |
---|
897 | dims.push_back(varId); |
---|
898 | SuperClassWriter::addVariable(varId, NC_INT, dims); |
---|
899 | |
---|
900 | SuperClassWriter::addAttribute("compress", compress, &varId); |
---|
901 | |
---|
902 | switch (SuperClass::type) |
---|
903 | { |
---|
904 | case (MULTI_FILE): |
---|
905 | { |
---|
906 | indexes -= firstGlobalIndex; |
---|
907 | SuperClassWriter::writeData(indexes, varId, isCollective, 0); |
---|
908 | break; |
---|
909 | } |
---|
910 | case (ONE_FILE): |
---|
911 | { |
---|
912 | std::vector<StdSize> start, count; |
---|
913 | start.push_back(offset); |
---|
914 | count.push_back(nbIndexes); |
---|
915 | |
---|
916 | SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count); |
---|
917 | break; |
---|
918 | } |
---|
919 | } |
---|
920 | } |
---|
921 | } |
---|
922 | |
---|
923 | if (!dims.empty()) |
---|
924 | grid->computeCompressedIndex(); |
---|
925 | } |
---|
926 | |
---|
927 | grid->addRelFileCompressed(this->filename); |
---|
928 | } |
---|
929 | catch (CNetCdfException& e) |
---|
930 | { |
---|
931 | StdString msg("On writing compressed grid : "); |
---|
932 | msg.append(grid->getId()); msg.append("\n"); |
---|
933 | msg.append("In the context : "); |
---|
934 | CContext* context = CContext::getCurrent(); |
---|
935 | msg.append(context->getId()); msg.append("\n"); |
---|
936 | msg.append(e.what()); |
---|
937 | ERROR("CNc4DataOutput::writeGridCompressed_(CGrid* grid)", << msg); |
---|
938 | } |
---|
939 | } |
---|
940 | |
---|
941 | //-------------------------------------------------------------- |
---|
942 | |
---|
943 | void CNc4DataOutput::writeTimeDimension_(void) |
---|
944 | { |
---|
945 | try |
---|
946 | { |
---|
947 | SuperClassWriter::addDimension("time_counter"); |
---|
948 | } |
---|
949 | catch (CNetCdfException& e) |
---|
950 | { |
---|
951 | StdString msg("On writing time dimension : time_couter\n"); |
---|
952 | msg.append("In the context : "); |
---|
953 | CContext* context = CContext::getCurrent() ; |
---|
954 | msg.append(context->getId()); msg.append("\n"); |
---|
955 | msg.append(e.what()); |
---|
956 | ERROR("CNc4DataOutput::writeTimeDimension_(void)", << msg); |
---|
957 | } |
---|
958 | } |
---|
959 | |
---|
960 | //-------------------------------------------------------------- |
---|
961 | |
---|
962 | void CNc4DataOutput::writeField_(CField* field) |
---|
963 | { |
---|
964 | CContext* context = CContext::getCurrent() ; |
---|
965 | CContextServer* server=context->server ; |
---|
966 | |
---|
967 | std::vector<StdString> dims, coodinates; |
---|
968 | CGrid* grid = field->grid; |
---|
969 | if (!grid->doGridHaveDataToWrite()) |
---|
970 | if (SuperClass::type==MULTI_FILE) return ; |
---|
971 | |
---|
972 | CArray<bool,1> axisDomainOrder = grid->axis_domain_order; |
---|
973 | int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0; |
---|
974 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
975 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
976 | |
---|
977 | StdString timeid = StdString("time_counter"); |
---|
978 | StdString dimXid,dimYid; |
---|
979 | std::deque<StdString> dimIdList, dimCoordList; |
---|
980 | bool hasArea = false; |
---|
981 | StdString cellMeasures = "area:"; |
---|
982 | bool compressedOutput = !field->indexed_output.isEmpty() && field->indexed_output; |
---|
983 | |
---|
984 | for (int i = 0; i < numElement; ++i) |
---|
985 | { |
---|
986 | if (axisDomainOrder(i)) |
---|
987 | { |
---|
988 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
989 | StdString domId = !domain->name.isEmpty() ? domain->name.getValue() : domain->getId(); |
---|
990 | StdString appendDomId = singleDomain ? "" : "_" + domId ; |
---|
991 | |
---|
992 | if (compressedOutput && domain->isCompressible() && domain->type != CDomain::type_attr::unstructured) |
---|
993 | { |
---|
994 | dimIdList.push_back(domId + "_points"); |
---|
995 | field->setUseCompressedOutput(); |
---|
996 | } |
---|
997 | |
---|
998 | switch (domain->type) |
---|
999 | { |
---|
1000 | case CDomain::type_attr::curvilinear: |
---|
1001 | if (!compressedOutput || !domain->isCompressible()) |
---|
1002 | { |
---|
1003 | dimXid = StdString("x").append(appendDomId); |
---|
1004 | dimIdList.push_back(dimXid); |
---|
1005 | dimYid = StdString("y").append(appendDomId); |
---|
1006 | dimIdList.push_back(dimYid); |
---|
1007 | } |
---|
1008 | dimCoordList.push_back(StdString("nav_lon").append(appendDomId)); |
---|
1009 | dimCoordList.push_back(StdString("nav_lat").append(appendDomId)); |
---|
1010 | break ; |
---|
1011 | case CDomain::type_attr::rectilinear: |
---|
1012 | if (!compressedOutput || !domain->isCompressible()) |
---|
1013 | { |
---|
1014 | dimXid = StdString("lon").append(appendDomId); |
---|
1015 | dimIdList.push_back(dimXid); |
---|
1016 | dimYid = StdString("lat").append(appendDomId); |
---|
1017 | dimIdList.push_back(dimYid); |
---|
1018 | } |
---|
1019 | break ; |
---|
1020 | case CDomain::type_attr::unstructured: |
---|
1021 | dimXid = StdString("cell").append(appendDomId); |
---|
1022 | dimIdList.push_back(dimXid); |
---|
1023 | dimCoordList.push_back(StdString("lon").append(appendDomId)); |
---|
1024 | dimCoordList.push_back(StdString("lat").append(appendDomId)); |
---|
1025 | break ; |
---|
1026 | } |
---|
1027 | if (domain->hasArea) |
---|
1028 | { |
---|
1029 | hasArea = true; |
---|
1030 | cellMeasures += " area" + appendDomId; |
---|
1031 | } |
---|
1032 | ++idxDomain; |
---|
1033 | } |
---|
1034 | else |
---|
1035 | { |
---|
1036 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
1037 | StdString axisId = !axis->name.isEmpty() ? axis->name.getValue() : axis->getId(); |
---|
1038 | |
---|
1039 | if (compressedOutput && axis->isCompressible()) |
---|
1040 | { |
---|
1041 | dimIdList.push_back(axisId + "_points"); |
---|
1042 | field->setUseCompressedOutput(); |
---|
1043 | } |
---|
1044 | else |
---|
1045 | dimIdList.push_back(axisId); |
---|
1046 | |
---|
1047 | dimCoordList.push_back(axisId); |
---|
1048 | ++idxAxis; |
---|
1049 | } |
---|
1050 | } |
---|
1051 | |
---|
1052 | /* |
---|
1053 | StdString lonid_loc = (server->intraCommSize > 1) |
---|
1054 | ? StdString("lon").append(appendDomid).append("_local") |
---|
1055 | : lonid; |
---|
1056 | StdString latid_loc = (server->intraCommSize > 1) |
---|
1057 | ? StdString("lat").append(appendDomid).append("_local") |
---|
1058 | : latid; |
---|
1059 | */ |
---|
1060 | StdString fieldid = (!field->name.isEmpty()) |
---|
1061 | ? field->name.getValue() : field->getBaseFieldReference()->getId(); |
---|
1062 | |
---|
1063 | // unsigned int ssize = domain->zoom_ni_loc.getValue() * domain->zoom_nj_loc.getValue(); |
---|
1064 | // bool isCurvilinear = (domain->lonvalue.getValue()->size() == ssize); |
---|
1065 | // bool isCurvilinear = domain->isCurvilinear ; |
---|
1066 | |
---|
1067 | nc_type type ; |
---|
1068 | if (field->prec.isEmpty()) type = NC_FLOAT ; |
---|
1069 | else |
---|
1070 | { |
---|
1071 | if (field->prec==2) type = NC_SHORT ; |
---|
1072 | else if (field->prec==4) type = NC_FLOAT ; |
---|
1073 | else if (field->prec==8) type = NC_DOUBLE ; |
---|
1074 | } |
---|
1075 | |
---|
1076 | bool wtime = !(!field->operation.isEmpty() && field->getOperationTimeType() == func::CFunctor::once); |
---|
1077 | |
---|
1078 | if (wtime) |
---|
1079 | { |
---|
1080 | |
---|
1081 | //StdOStringStream oss; |
---|
1082 | // oss << "time_" << field->operation.getValue() |
---|
1083 | // << "_" << field->getRelFile()->output_freq.getValue(); |
---|
1084 | //oss |
---|
1085 | if (field->getOperationTimeType() == func::CFunctor::instant) coodinates.push_back(string("time_instant")); |
---|
1086 | else if (field->getOperationTimeType() == func::CFunctor::centered) coodinates.push_back(string("time_centered")); |
---|
1087 | dims.push_back(timeid); |
---|
1088 | } |
---|
1089 | |
---|
1090 | if (compressedOutput && grid->isCompressible()) |
---|
1091 | { |
---|
1092 | dims.push_back(grid->getId() + "_points"); |
---|
1093 | field->setUseCompressedOutput(); |
---|
1094 | } |
---|
1095 | else |
---|
1096 | { |
---|
1097 | while (!dimIdList.empty()) |
---|
1098 | { |
---|
1099 | dims.push_back(dimIdList.back()); |
---|
1100 | dimIdList.pop_back(); |
---|
1101 | } |
---|
1102 | } |
---|
1103 | |
---|
1104 | while (!dimCoordList.empty()) |
---|
1105 | { |
---|
1106 | coodinates.push_back(dimCoordList.back()); |
---|
1107 | dimCoordList.pop_back(); |
---|
1108 | } |
---|
1109 | |
---|
1110 | try |
---|
1111 | { |
---|
1112 | SuperClassWriter::addVariable(fieldid, type, dims); |
---|
1113 | |
---|
1114 | if (!field->standard_name.isEmpty()) |
---|
1115 | SuperClassWriter::addAttribute |
---|
1116 | ("standard_name", field->standard_name.getValue(), &fieldid); |
---|
1117 | |
---|
1118 | if (!field->long_name.isEmpty()) |
---|
1119 | SuperClassWriter::addAttribute |
---|
1120 | ("long_name", field->long_name.getValue(), &fieldid); |
---|
1121 | |
---|
1122 | if (!field->unit.isEmpty()) |
---|
1123 | SuperClassWriter::addAttribute |
---|
1124 | ("units", field->unit.getValue(), &fieldid); |
---|
1125 | |
---|
1126 | if (!field->valid_min.isEmpty()) |
---|
1127 | SuperClassWriter::addAttribute |
---|
1128 | ("valid_min", field->valid_min.getValue(), &fieldid); |
---|
1129 | |
---|
1130 | if (!field->valid_max.isEmpty()) |
---|
1131 | SuperClassWriter::addAttribute |
---|
1132 | ("valid_max", field->valid_max.getValue(), &fieldid); |
---|
1133 | |
---|
1134 | if (!field->scale_factor.isEmpty()) |
---|
1135 | SuperClassWriter::addAttribute |
---|
1136 | ("scale_factor", field->scale_factor.getValue(), &fieldid); |
---|
1137 | |
---|
1138 | if (!field->add_offset.isEmpty()) |
---|
1139 | SuperClassWriter::addAttribute |
---|
1140 | ("add_offset", field->add_offset.getValue(), &fieldid); |
---|
1141 | |
---|
1142 | SuperClassWriter::addAttribute |
---|
1143 | ("online_operation", field->operation.getValue(), &fieldid); |
---|
1144 | |
---|
1145 | // write child variables as attributes |
---|
1146 | |
---|
1147 | |
---|
1148 | vector<CVariable*> listVars = field->getAllVariables() ; |
---|
1149 | for (vector<CVariable*>::iterator it = listVars.begin() ;it != listVars.end(); it++) writeAttribute_(*it, fieldid) ; |
---|
1150 | |
---|
1151 | |
---|
1152 | if (wtime) |
---|
1153 | { |
---|
1154 | CDuration freqOp = field->freq_op.getValue(); |
---|
1155 | freqOp.solveTimeStep(*context->calendar); |
---|
1156 | StdString freqOpStr = freqOp.toStringUDUnits(); |
---|
1157 | SuperClassWriter::addAttribute("interval_operation", freqOpStr, &fieldid); |
---|
1158 | |
---|
1159 | CDuration freqOut = field->getRelFile()->output_freq.getValue(); |
---|
1160 | freqOut.solveTimeStep(*context->calendar); |
---|
1161 | SuperClassWriter::addAttribute("interval_write", freqOut.toStringUDUnits(), &fieldid); |
---|
1162 | |
---|
1163 | StdString cellMethods = "time: "; |
---|
1164 | if (field->operation.getValue() == "instant") cellMethods += "point"; |
---|
1165 | else if (field->operation.getValue() == "average") cellMethods += "mean"; |
---|
1166 | else if (field->operation.getValue() == "accumulate") cellMethods += "sum"; |
---|
1167 | else cellMethods += field->operation; |
---|
1168 | if (freqOp.resolve(*context->calendar) != freqOut.resolve(*context->calendar)) |
---|
1169 | cellMethods += " (interval: " + freqOpStr + ")"; |
---|
1170 | SuperClassWriter::addAttribute("cell_methods", cellMethods, &fieldid); |
---|
1171 | } |
---|
1172 | |
---|
1173 | if (hasArea) |
---|
1174 | SuperClassWriter::addAttribute("cell_measures", cellMeasures, &fieldid); |
---|
1175 | |
---|
1176 | if (!field->default_value.isEmpty()) |
---|
1177 | { |
---|
1178 | double default_value = field->default_value.getValue(); |
---|
1179 | float fdefault_value = (float)default_value; |
---|
1180 | if (type == NC_DOUBLE) |
---|
1181 | SuperClassWriter::setDefaultValue(fieldid, &default_value); |
---|
1182 | else |
---|
1183 | SuperClassWriter::setDefaultValue(fieldid, &fdefault_value); |
---|
1184 | } |
---|
1185 | else |
---|
1186 | SuperClassWriter::setDefaultValue(fieldid, (double*)NULL); |
---|
1187 | |
---|
1188 | if (field->compression_level.isEmpty()) |
---|
1189 | field->compression_level = field->file->compression_level.isEmpty() ? 0 : field->file->compression_level; |
---|
1190 | SuperClassWriter::setCompressionLevel(fieldid, field->compression_level); |
---|
1191 | |
---|
1192 | { // Ecriture des coordonnées |
---|
1193 | |
---|
1194 | StdString coordstr; //boost::algorithm::join(coodinates, " ") |
---|
1195 | std::vector<StdString>::iterator |
---|
1196 | itc = coodinates.begin(), endc = coodinates.end(); |
---|
1197 | |
---|
1198 | for (; itc!= endc; itc++) |
---|
1199 | { |
---|
1200 | StdString & coord = *itc; |
---|
1201 | if (itc+1 != endc) |
---|
1202 | coordstr.append(coord).append(" "); |
---|
1203 | else coordstr.append(coord); |
---|
1204 | } |
---|
1205 | |
---|
1206 | SuperClassWriter::addAttribute("coordinates", coordstr, &fieldid); |
---|
1207 | |
---|
1208 | } |
---|
1209 | } |
---|
1210 | catch (CNetCdfException& e) |
---|
1211 | { |
---|
1212 | StdString msg("On writing field : "); |
---|
1213 | msg.append(fieldid); msg.append("\n"); |
---|
1214 | msg.append("In the context : "); |
---|
1215 | msg.append(context->getId()); msg.append("\n"); |
---|
1216 | msg.append(e.what()); |
---|
1217 | ERROR("CNc4DataOutput::writeField_(CField* field)", << msg); |
---|
1218 | } |
---|
1219 | } |
---|
1220 | |
---|
1221 | //-------------------------------------------------------------- |
---|
1222 | |
---|
1223 | void CNc4DataOutput::writeFile_ (CFile* file) |
---|
1224 | { |
---|
1225 | StdString filename = (!file->name.isEmpty()) |
---|
1226 | ? file->name.getValue() : file->getId(); |
---|
1227 | StdString description = (!file->description.isEmpty()) |
---|
1228 | ? file->description.getValue() |
---|
1229 | : StdString("Created by xios"); |
---|
1230 | |
---|
1231 | singleDomain = (file->nbDomains == 1); |
---|
1232 | |
---|
1233 | try |
---|
1234 | { |
---|
1235 | this->writeFileAttributes(filename, description, |
---|
1236 | StdString("CF-1.5"), |
---|
1237 | StdString("An IPSL model"), |
---|
1238 | this->getTimeStamp()); |
---|
1239 | |
---|
1240 | if (!appendMode) |
---|
1241 | SuperClassWriter::addDimension("axis_nbounds", 2); |
---|
1242 | } |
---|
1243 | catch (CNetCdfException& e) |
---|
1244 | { |
---|
1245 | StdString msg("On writing file : "); |
---|
1246 | msg.append(filename); msg.append("\n"); |
---|
1247 | msg.append("In the context : "); |
---|
1248 | CContext* context = CContext::getCurrent() ; |
---|
1249 | msg.append(context->getId()); msg.append("\n"); |
---|
1250 | msg.append(e.what()); |
---|
1251 | ERROR("CNc4DataOutput::writeFile_ (CFile* file)", << msg); |
---|
1252 | } |
---|
1253 | } |
---|
1254 | |
---|
1255 | void CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId) |
---|
1256 | { |
---|
1257 | string name ; |
---|
1258 | if (!var->name.isEmpty()) name=var->name ; |
---|
1259 | else if (var->hasId()) name=var->getId() ; |
---|
1260 | else return ; |
---|
1261 | |
---|
1262 | try |
---|
1263 | { |
---|
1264 | if (var->type.getValue() == CVariable::type_attr::t_int || var->type.getValue() == CVariable::type_attr::t_int32) |
---|
1265 | addAttribute(name, var->getData<int>(), &fieldId); |
---|
1266 | else if (var->type.getValue() == CVariable::type_attr::t_int16) |
---|
1267 | addAttribute(name, var->getData<short int>(), &fieldId); |
---|
1268 | else if (var->type.getValue() == CVariable::type_attr::t_float) |
---|
1269 | addAttribute(name, var->getData<float>(), &fieldId); |
---|
1270 | else if (var->type.getValue() == CVariable::type_attr::t_double) |
---|
1271 | addAttribute(name, var->getData<double>(), &fieldId); |
---|
1272 | else if (var->type.getValue() == CVariable::type_attr::t_string) |
---|
1273 | addAttribute(name, var->getData<string>(), &fieldId); |
---|
1274 | else |
---|
1275 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", |
---|
1276 | << "Unsupported variable of type " << var->type.getStringValue()); |
---|
1277 | } |
---|
1278 | catch (CNetCdfException& e) |
---|
1279 | { |
---|
1280 | StdString msg("On writing attributes of variable with name : "); |
---|
1281 | msg.append(name); msg.append("in the field "); msg.append(fieldId); msg.append("\n"); |
---|
1282 | msg.append("In the context : "); |
---|
1283 | CContext* context = CContext::getCurrent() ; |
---|
1284 | msg.append(context->getId()); msg.append("\n"); |
---|
1285 | msg.append(e.what()); |
---|
1286 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", << msg); |
---|
1287 | } |
---|
1288 | } |
---|
1289 | |
---|
1290 | void CNc4DataOutput::writeAttribute_ (CVariable* var) |
---|
1291 | { |
---|
1292 | string name ; |
---|
1293 | if (!var->name.isEmpty()) name=var->name ; |
---|
1294 | else if (var->hasId()) name=var->getId() ; |
---|
1295 | else return ; |
---|
1296 | try |
---|
1297 | { |
---|
1298 | if (var->type.getValue() == CVariable::type_attr::t_int || var->type.getValue() == CVariable::type_attr::t_int32) |
---|
1299 | addAttribute(name, var->getData<int>()); |
---|
1300 | else if (var->type.getValue() == CVariable::type_attr::t_int16) |
---|
1301 | addAttribute(name, var->getData<short int>()); |
---|
1302 | else if (var->type.getValue() == CVariable::type_attr::t_float) |
---|
1303 | addAttribute(name, var->getData<float>()); |
---|
1304 | else if (var->type.getValue() == CVariable::type_attr::t_double) |
---|
1305 | addAttribute(name, var->getData<double>()); |
---|
1306 | else if (var->type.getValue() == CVariable::type_attr::t_string) |
---|
1307 | addAttribute(name, var->getData<string>()); |
---|
1308 | else |
---|
1309 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", |
---|
1310 | << "Unsupported variable of type " << var->type.getStringValue()); |
---|
1311 | } |
---|
1312 | catch (CNetCdfException& e) |
---|
1313 | { |
---|
1314 | StdString msg("On writing attributes of variable with name : "); |
---|
1315 | msg.append(name); msg.append("\n"); |
---|
1316 | msg.append("In the context : "); |
---|
1317 | CContext* context = CContext::getCurrent() ; |
---|
1318 | msg.append(context->getId()); msg.append("\n"); |
---|
1319 | msg.append(e.what()); |
---|
1320 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", << msg); |
---|
1321 | } |
---|
1322 | } |
---|
1323 | |
---|
1324 | void CNc4DataOutput::syncFile_ (void) |
---|
1325 | { |
---|
1326 | try |
---|
1327 | { |
---|
1328 | SuperClassWriter::sync() ; |
---|
1329 | } |
---|
1330 | catch (CNetCdfException& e) |
---|
1331 | { |
---|
1332 | StdString msg("On synchronizing the write among processes"); |
---|
1333 | msg.append("In the context : "); |
---|
1334 | CContext* context = CContext::getCurrent() ; |
---|
1335 | msg.append(context->getId()); msg.append("\n"); |
---|
1336 | msg.append(e.what()); |
---|
1337 | ERROR("CNc4DataOutput::syncFile_ (void)", << msg); |
---|
1338 | } |
---|
1339 | } |
---|
1340 | |
---|
1341 | void CNc4DataOutput::closeFile_ (void) |
---|
1342 | { |
---|
1343 | try |
---|
1344 | { |
---|
1345 | SuperClassWriter::close() ; |
---|
1346 | } |
---|
1347 | catch (CNetCdfException& e) |
---|
1348 | { |
---|
1349 | StdString msg("On closing file"); |
---|
1350 | msg.append("In the context : "); |
---|
1351 | CContext* context = CContext::getCurrent() ; |
---|
1352 | msg.append(context->getId()); msg.append("\n"); |
---|
1353 | msg.append(e.what()); |
---|
1354 | ERROR("CNc4DataOutput::syncFile_ (void)", << msg); |
---|
1355 | } |
---|
1356 | |
---|
1357 | } |
---|
1358 | |
---|
1359 | //--------------------------------------------------------------- |
---|
1360 | |
---|
1361 | StdString CNc4DataOutput::getTimeStamp(void) const |
---|
1362 | { |
---|
1363 | const int buffer_size = 100; |
---|
1364 | time_t rawtime; |
---|
1365 | struct tm * timeinfo = NULL; |
---|
1366 | char buffer [buffer_size]; |
---|
1367 | |
---|
1368 | time ( &rawtime ); |
---|
1369 | timeinfo = localtime ( &rawtime ); |
---|
1370 | strftime (buffer, buffer_size, "%Y-%b-%d %H:%M:%S %Z", timeinfo); |
---|
1371 | |
---|
1372 | return (StdString(buffer)); |
---|
1373 | } |
---|
1374 | |
---|
1375 | //--------------------------------------------------------------- |
---|
1376 | |
---|
1377 | void CNc4DataOutput::writeFieldData_ (CField* field) |
---|
1378 | { |
---|
1379 | CContext* context = CContext::getCurrent(); |
---|
1380 | CContextServer* server = context->server; |
---|
1381 | CGrid* grid = field->grid; |
---|
1382 | |
---|
1383 | if (!grid->doGridHaveDataToWrite()) |
---|
1384 | if (SuperClass::type == MULTI_FILE || !isCollective) return; |
---|
1385 | |
---|
1386 | StdString fieldid = !field->name.isEmpty() |
---|
1387 | ? field->name.getValue() |
---|
1388 | : field->getBaseFieldReference()->getId(); |
---|
1389 | |
---|
1390 | StdOStringStream oss; |
---|
1391 | string timeAxisId; |
---|
1392 | if (field->getOperationTimeType() == func::CFunctor::instant) timeAxisId = "time_instant"; |
---|
1393 | else if (field->getOperationTimeType() == func::CFunctor::centered) timeAxisId = "time_centered"; |
---|
1394 | |
---|
1395 | StdString timeBoundId("time_counter_bounds"); |
---|
1396 | |
---|
1397 | StdString timeAxisBoundId; |
---|
1398 | if (field->getOperationTimeType() == func::CFunctor::instant) timeAxisBoundId = "time_instant_bounds"; |
---|
1399 | else if (field->getOperationTimeType() == func::CFunctor::centered) timeAxisBoundId = "time_centered_bounds"; |
---|
1400 | |
---|
1401 | if (!field->wasWritten()) |
---|
1402 | { |
---|
1403 | if (appendMode && field->file->record_offset.isEmpty()) |
---|
1404 | { |
---|
1405 | field->resetNStep(getRecordFromTime(field->last_Write_srv) + 1); |
---|
1406 | } |
---|
1407 | |
---|
1408 | field->setWritten(); |
---|
1409 | } |
---|
1410 | |
---|
1411 | |
---|
1412 | CArray<double,1> time_data(1); |
---|
1413 | CArray<double,1> time_data_bound(2); |
---|
1414 | CArray<double,1> time_counter(1); |
---|
1415 | CArray<double,1> time_counter_bound(2); |
---|
1416 | |
---|
1417 | bool wtime = (field->getOperationTimeType() != func::CFunctor::once); |
---|
1418 | |
---|
1419 | if (wtime) |
---|
1420 | { |
---|
1421 | Time lastWrite = field->last_Write_srv; |
---|
1422 | Time lastLastWrite = field->lastlast_Write_srv; |
---|
1423 | |
---|
1424 | if (field->getOperationTimeType() == func::CFunctor::instant) |
---|
1425 | time_data(0) = lastWrite; |
---|
1426 | else if (field->getOperationTimeType() == func::CFunctor::centered) |
---|
1427 | time_data(0) = (lastWrite + lastLastWrite) / 2; |
---|
1428 | |
---|
1429 | if (field->getOperationTimeType() == func::CFunctor::instant) |
---|
1430 | time_data_bound(0) = time_data_bound(1) = lastWrite; |
---|
1431 | else if (field->getOperationTimeType() == func::CFunctor::centered) |
---|
1432 | { |
---|
1433 | time_data_bound(0) = lastLastWrite; |
---|
1434 | time_data_bound(1) = lastWrite; |
---|
1435 | } |
---|
1436 | |
---|
1437 | if (field->file->time_counter == CFile::time_counter_attr::instant) |
---|
1438 | time_counter(0) = lastWrite; |
---|
1439 | else if (field->file->time_counter == CFile::time_counter_attr::centered) |
---|
1440 | time_counter(0) = (lastWrite + lastLastWrite) / 2; |
---|
1441 | else if (field->file->time_counter == CFile::time_counter_attr::record) |
---|
1442 | time_counter(0) = field->getNStep() - 1; |
---|
1443 | |
---|
1444 | |
---|
1445 | if (field->file->time_counter == CFile::time_counter_attr::instant) |
---|
1446 | time_counter_bound(0) = time_counter_bound(1) = lastWrite; |
---|
1447 | else if (field->file->time_counter == CFile::time_counter_attr::centered) |
---|
1448 | { |
---|
1449 | time_counter_bound(0) = lastLastWrite; |
---|
1450 | time_counter_bound(1) = lastWrite; |
---|
1451 | } |
---|
1452 | else if (field->file->time_counter == CFile::time_counter_attr::record) |
---|
1453 | time_counter_bound(0) = time_counter_bound(1) = field->getNStep() - 1; |
---|
1454 | } |
---|
1455 | |
---|
1456 | bool isRoot = (server->intraCommRank == 0); |
---|
1457 | |
---|
1458 | if (!field->scale_factor.isEmpty() || !field->add_offset.isEmpty()) |
---|
1459 | { |
---|
1460 | double scaleFactor = 1.0; |
---|
1461 | double addOffset = 0.0; |
---|
1462 | if (!field->scale_factor.isEmpty()) scaleFactor = field->scale_factor; |
---|
1463 | if (!field->add_offset.isEmpty()) addOffset = field->add_offset; |
---|
1464 | field->scaleFactorAddOffset(scaleFactor, addOffset); |
---|
1465 | } |
---|
1466 | |
---|
1467 | try |
---|
1468 | { |
---|
1469 | size_t writtenSize; |
---|
1470 | if (field->getUseCompressedOutput()) |
---|
1471 | writtenSize = grid->getNumberWrittenIndexes(); |
---|
1472 | else |
---|
1473 | writtenSize = grid->getWrittenDataSize(); |
---|
1474 | |
---|
1475 | CArray<double,1> fieldData(writtenSize); |
---|
1476 | if (!field->default_value.isEmpty()) fieldData = field->default_value; |
---|
1477 | |
---|
1478 | if (field->getUseCompressedOutput()) |
---|
1479 | field->outputCompressedField(fieldData); |
---|
1480 | else |
---|
1481 | field->outputField(fieldData); |
---|
1482 | |
---|
1483 | if (!field->prec.isEmpty() && field->prec == 2) fieldData = round(fieldData); |
---|
1484 | |
---|
1485 | switch (SuperClass::type) |
---|
1486 | { |
---|
1487 | case (MULTI_FILE) : |
---|
1488 | { |
---|
1489 | SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1); |
---|
1490 | if (wtime) |
---|
1491 | { |
---|
1492 | SuperClassWriter::writeData(time_data, timeAxisId, isCollective, field->getNStep() - 1); |
---|
1493 | SuperClassWriter::writeData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1); |
---|
1494 | if (field->file->time_counter != CFile::time_counter_attr::none) |
---|
1495 | { |
---|
1496 | SuperClassWriter::writeData(time_counter, string("time_counter"), isCollective, field->getNStep() - 1); |
---|
1497 | if (field->file->time_counter != CFile::time_counter_attr::record) |
---|
1498 | SuperClassWriter::writeData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1); |
---|
1499 | } |
---|
1500 | } |
---|
1501 | break; |
---|
1502 | } |
---|
1503 | case (ONE_FILE) : |
---|
1504 | { |
---|
1505 | const std::vector<int>& nZoomBeginGlobal = grid->getDistributionServer()->getZoomBeginGlobal(); |
---|
1506 | const std::vector<int>& nZoomBeginServer = grid->getDistributionServer()->getZoomBeginServer(); |
---|
1507 | const std::vector<int>& nZoomSizeServer = grid->getDistributionServer()->getZoomSizeServer(); |
---|
1508 | |
---|
1509 | std::vector<StdSize> start, count; |
---|
1510 | |
---|
1511 | if (field->getUseCompressedOutput()) |
---|
1512 | { |
---|
1513 | if (grid->isCompressible()) |
---|
1514 | { |
---|
1515 | start.push_back(grid->getOffsetWrittenIndexes()); |
---|
1516 | count.push_back(grid->getNumberWrittenIndexes()); |
---|
1517 | } |
---|
1518 | else |
---|
1519 | { |
---|
1520 | CArray<bool,1> axisDomainOrder = grid->axis_domain_order; |
---|
1521 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
1522 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
1523 | int numElement = axisDomainOrder.numElements(); |
---|
1524 | int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
---|
1525 | int idx = nZoomBeginGlobal.size() - 1; |
---|
1526 | |
---|
1527 | start.reserve(nZoomBeginGlobal.size()); |
---|
1528 | count.reserve(nZoomBeginGlobal.size()); |
---|
1529 | |
---|
1530 | |
---|
1531 | for (int i = numElement - 1; i >= 0; --i) |
---|
1532 | { |
---|
1533 | if (axisDomainOrder(i)) |
---|
1534 | { |
---|
1535 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
1536 | |
---|
1537 | if (domain->isCompressible()) |
---|
1538 | { |
---|
1539 | start.push_back(domain->getOffsetWrittenIndexes()); |
---|
1540 | count.push_back(domain->getNumberWrittenIndexes()); |
---|
1541 | idx -= 2; |
---|
1542 | } |
---|
1543 | else |
---|
1544 | { |
---|
1545 | if ((domain->type) != CDomain::type_attr::unstructured) |
---|
1546 | { |
---|
1547 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
1548 | count.push_back(nZoomSizeServer[idx]); |
---|
1549 | } |
---|
1550 | --idx; |
---|
1551 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
1552 | count.push_back(nZoomSizeServer[idx]); |
---|
1553 | --idx; |
---|
1554 | } |
---|
1555 | --idxDomain; |
---|
1556 | } |
---|
1557 | else |
---|
1558 | { |
---|
1559 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
1560 | |
---|
1561 | if (axis->isCompressible()) |
---|
1562 | { |
---|
1563 | start.push_back(axis->getOffsetWrittenIndexes()); |
---|
1564 | count.push_back(axis->getNumberWrittenIndexes()); |
---|
1565 | } |
---|
1566 | else |
---|
1567 | { |
---|
1568 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
1569 | count.push_back(nZoomSizeServer[idx]); |
---|
1570 | } |
---|
1571 | |
---|
1572 | --idxAxis; |
---|
1573 | --idx; |
---|
1574 | } |
---|
1575 | } |
---|
1576 | } |
---|
1577 | } |
---|
1578 | else |
---|
1579 | { |
---|
1580 | |
---|
1581 | CArray<bool,1> axisDomainOrder = grid->axis_domain_order; |
---|
1582 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
1583 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
1584 | int numElement = axisDomainOrder.numElements(); |
---|
1585 | int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
---|
1586 | int idx = nZoomBeginGlobal.size() - 1; |
---|
1587 | |
---|
1588 | start.reserve(nZoomBeginGlobal.size()); |
---|
1589 | count.reserve(nZoomBeginGlobal.size()); |
---|
1590 | |
---|
1591 | for (int i = numElement - 1; i >= 0; --i) |
---|
1592 | { |
---|
1593 | if (axisDomainOrder(i)) |
---|
1594 | { |
---|
1595 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
1596 | if ((domain->type) != CDomain::type_attr::unstructured) |
---|
1597 | { |
---|
1598 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
1599 | count.push_back(nZoomSizeServer[idx]); |
---|
1600 | } |
---|
1601 | --idx ; |
---|
1602 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
1603 | count.push_back(nZoomSizeServer[idx]); |
---|
1604 | --idx ; |
---|
1605 | --idxDomain; |
---|
1606 | } |
---|
1607 | else |
---|
1608 | { |
---|
1609 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
1610 | count.push_back(nZoomSizeServer[idx]); |
---|
1611 | --idx; |
---|
1612 | } |
---|
1613 | } |
---|
1614 | } |
---|
1615 | |
---|
1616 | SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1, &start, &count); |
---|
1617 | if (wtime) |
---|
1618 | { |
---|
1619 | SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot); |
---|
1620 | SuperClassWriter::writeTimeAxisData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot); |
---|
1621 | if (field->file->time_counter != CFile::time_counter_attr::none) |
---|
1622 | { |
---|
1623 | SuperClassWriter::writeTimeAxisData(time_counter, string("time_counter"), isCollective, field->getNStep() - 1, isRoot); |
---|
1624 | if (field->file->time_counter != CFile::time_counter_attr::record) |
---|
1625 | SuperClassWriter::writeTimeAxisData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot); |
---|
1626 | } |
---|
1627 | } |
---|
1628 | |
---|
1629 | break; |
---|
1630 | } |
---|
1631 | } |
---|
1632 | } |
---|
1633 | catch (CNetCdfException& e) |
---|
1634 | { |
---|
1635 | StdString msg("On writing field data: "); |
---|
1636 | msg.append(fieldid); msg.append("\n"); |
---|
1637 | msg.append("In the context : "); |
---|
1638 | msg.append(context->getId()); msg.append("\n"); |
---|
1639 | msg.append(e.what()); |
---|
1640 | ERROR("CNc4DataOutput::writeFieldData_ (CField* field)", << msg); |
---|
1641 | } |
---|
1642 | } |
---|
1643 | |
---|
1644 | //--------------------------------------------------------------- |
---|
1645 | |
---|
1646 | void CNc4DataOutput::writeTimeAxis_ |
---|
1647 | (CField* field, |
---|
1648 | const boost::shared_ptr<CCalendar> cal) |
---|
1649 | { |
---|
1650 | StdOStringStream oss; |
---|
1651 | |
---|
1652 | if (field->getOperationTimeType() == func::CFunctor::once) return ; |
---|
1653 | |
---|
1654 | // oss << "time_" << field->operation.getValue() |
---|
1655 | // << "_" << field->getRelFile()->output_freq.getValue(); |
---|
1656 | |
---|
1657 | // StdString axisid = oss.str(); |
---|
1658 | // if (field->getOperationTimeType() == func::CFunctor::centered) axisid="time_centered" ; |
---|
1659 | // else if (field->getOperationTimeType() == func::CFunctor::instant) axisid="time_instant" ; |
---|
1660 | |
---|
1661 | StdString axisid("time_centered") ; |
---|
1662 | StdString axisBoundId("time_centered_bounds"); |
---|
1663 | StdString timeid("time_counter"); |
---|
1664 | StdString timeBoundId("axis_nbounds"); |
---|
1665 | |
---|
1666 | if (field->getOperationTimeType() == func::CFunctor::instant) |
---|
1667 | { |
---|
1668 | axisid = "time_instant"; |
---|
1669 | axisBoundId = "time_instant_bounds"; |
---|
1670 | } |
---|
1671 | |
---|
1672 | try |
---|
1673 | { |
---|
1674 | // Adding time_instant or time_centered |
---|
1675 | std::vector<StdString> dims; |
---|
1676 | dims.push_back(timeid); |
---|
1677 | if (!SuperClassWriter::varExist(axisid)) |
---|
1678 | { |
---|
1679 | SuperClassWriter::addVariable(axisid, NC_DOUBLE, dims); |
---|
1680 | |
---|
1681 | CDate timeOrigin=cal->getTimeOrigin() ; |
---|
1682 | StdOStringStream oss2; |
---|
1683 | // oss2<<initDate.getYear()<<"-"<<initDate.getMonth()<<"-"<<initDate.getDay()<<" " |
---|
1684 | // <<initDate.getHour()<<"-"<<initDate.getMinute()<<"-"<<initDate.getSecond() ; |
---|
1685 | StdString strInitdate=oss2.str() ; |
---|
1686 | StdString strTimeOrigin=timeOrigin.toString() ; |
---|
1687 | this->writeTimeAxisAttributes |
---|
1688 | (axisid, cal->getType(), |
---|
1689 | StdString("seconds since ").append(strTimeOrigin), |
---|
1690 | strTimeOrigin, axisBoundId); |
---|
1691 | } |
---|
1692 | |
---|
1693 | // Adding time_instant_bounds or time_centered_bounds variables |
---|
1694 | if (!SuperClassWriter::varExist(axisBoundId)) |
---|
1695 | { |
---|
1696 | dims.clear() ; |
---|
1697 | dims.push_back(timeid); |
---|
1698 | dims.push_back(timeBoundId); |
---|
1699 | SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims); |
---|
1700 | } |
---|
1701 | |
---|
1702 | if (field->file->time_counter != CFile::time_counter_attr::none) |
---|
1703 | { |
---|
1704 | // Adding time_counter |
---|
1705 | axisid = "time_counter"; |
---|
1706 | axisBoundId = "time_counter_bounds"; |
---|
1707 | dims.clear(); |
---|
1708 | dims.push_back(timeid); |
---|
1709 | if (!SuperClassWriter::varExist(axisid)) |
---|
1710 | { |
---|
1711 | SuperClassWriter::addVariable(axisid, NC_DOUBLE, dims); |
---|
1712 | SuperClassWriter::addAttribute("axis", string("T"), &axisid); |
---|
1713 | |
---|
1714 | if (field->file->time_counter != CFile::time_counter_attr::record) |
---|
1715 | { |
---|
1716 | CDate timeOrigin = cal->getTimeOrigin(); |
---|
1717 | StdString strTimeOrigin = timeOrigin.toString(); |
---|
1718 | |
---|
1719 | this->writeTimeAxisAttributes(axisid, cal->getType(), |
---|
1720 | StdString("seconds since ").append(strTimeOrigin), |
---|
1721 | strTimeOrigin, axisBoundId); |
---|
1722 | } |
---|
1723 | } |
---|
1724 | |
---|
1725 | // Adding time_counter_bound dimension |
---|
1726 | if (field->file->time_counter != CFile::time_counter_attr::record) |
---|
1727 | { |
---|
1728 | if (!SuperClassWriter::varExist(axisBoundId)) |
---|
1729 | { |
---|
1730 | dims.clear(); |
---|
1731 | dims.push_back(timeid); |
---|
1732 | dims.push_back(timeBoundId); |
---|
1733 | SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims); |
---|
1734 | } |
---|
1735 | } |
---|
1736 | } |
---|
1737 | } |
---|
1738 | catch (CNetCdfException& e) |
---|
1739 | { |
---|
1740 | StdString msg("On writing time axis data: "); |
---|
1741 | msg.append("In the context : "); |
---|
1742 | CContext* context = CContext::getCurrent() ; |
---|
1743 | msg.append(context->getId()); msg.append("\n"); |
---|
1744 | msg.append(e.what()); |
---|
1745 | ERROR("CNc4DataOutput::writeTimeAxis_ (CField* field, \ |
---|
1746 | const boost::shared_ptr<CCalendar> cal)", << msg); |
---|
1747 | } |
---|
1748 | } |
---|
1749 | |
---|
1750 | //--------------------------------------------------------------- |
---|
1751 | |
---|
1752 | void CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, |
---|
1753 | const StdString & calendar, |
---|
1754 | const StdString & units, |
---|
1755 | const StdString & time_origin, |
---|
1756 | const StdString & time_bounds, |
---|
1757 | const StdString & standard_name, |
---|
1758 | const StdString & long_name) |
---|
1759 | { |
---|
1760 | try |
---|
1761 | { |
---|
1762 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
---|
1763 | SuperClassWriter::addAttribute("long_name", long_name , &axis_name); |
---|
1764 | SuperClassWriter::addAttribute("calendar", calendar , &axis_name); |
---|
1765 | SuperClassWriter::addAttribute("units", units , &axis_name); |
---|
1766 | SuperClassWriter::addAttribute("time_origin", time_origin , &axis_name); |
---|
1767 | SuperClassWriter::addAttribute("bounds", time_bounds , &axis_name); |
---|
1768 | } |
---|
1769 | catch (CNetCdfException& e) |
---|
1770 | { |
---|
1771 | StdString msg("On writing time axis Attribute: "); |
---|
1772 | msg.append("In the context : "); |
---|
1773 | CContext* context = CContext::getCurrent() ; |
---|
1774 | msg.append(context->getId()); msg.append("\n"); |
---|
1775 | msg.append(e.what()); |
---|
1776 | ERROR("CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, \ |
---|
1777 | const StdString & calendar,\ |
---|
1778 | const StdString & units, \ |
---|
1779 | const StdString & time_origin, \ |
---|
1780 | const StdString & time_bounds, \ |
---|
1781 | const StdString & standard_name, \ |
---|
1782 | const StdString & long_name)", << msg); |
---|
1783 | } |
---|
1784 | } |
---|
1785 | |
---|
1786 | //--------------------------------------------------------------- |
---|
1787 | |
---|
1788 | void CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, |
---|
1789 | const StdString & axis, |
---|
1790 | const StdString & standard_name, |
---|
1791 | const StdString & long_name, |
---|
1792 | const StdString & units, |
---|
1793 | const StdString & nav_model) |
---|
1794 | { |
---|
1795 | try |
---|
1796 | { |
---|
1797 | if (!axis.empty()) |
---|
1798 | SuperClassWriter::addAttribute("axis" , axis , &axis_name); |
---|
1799 | |
---|
1800 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
---|
1801 | SuperClassWriter::addAttribute("long_name" , long_name , &axis_name); |
---|
1802 | SuperClassWriter::addAttribute("units" , units , &axis_name); |
---|
1803 | SuperClassWriter::addAttribute("nav_model" , nav_model , &axis_name); |
---|
1804 | } |
---|
1805 | catch (CNetCdfException& e) |
---|
1806 | { |
---|
1807 | StdString msg("On writing Axis Attribute: "); |
---|
1808 | msg.append("In the context : "); |
---|
1809 | CContext* context = CContext::getCurrent() ; |
---|
1810 | msg.append(context->getId()); msg.append("\n"); |
---|
1811 | msg.append(e.what()); |
---|
1812 | ERROR("CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, \ |
---|
1813 | const StdString & axis, \ |
---|
1814 | const StdString & standard_name, \ |
---|
1815 | const StdString & long_name, \ |
---|
1816 | const StdString & units, \ |
---|
1817 | const StdString & nav_model)", << msg); |
---|
1818 | } |
---|
1819 | } |
---|
1820 | |
---|
1821 | //--------------------------------------------------------------- |
---|
1822 | |
---|
1823 | void CNc4DataOutput::writeLocalAttributes |
---|
1824 | (int ibegin, int ni, int jbegin, int nj, StdString domid) |
---|
1825 | { |
---|
1826 | try |
---|
1827 | { |
---|
1828 | SuperClassWriter::addAttribute(StdString("ibegin").append(domid), ibegin); |
---|
1829 | SuperClassWriter::addAttribute(StdString("ni" ).append(domid), ni); |
---|
1830 | SuperClassWriter::addAttribute(StdString("jbegin").append(domid), jbegin); |
---|
1831 | SuperClassWriter::addAttribute(StdString("nj" ).append(domid), nj); |
---|
1832 | } |
---|
1833 | catch (CNetCdfException& e) |
---|
1834 | { |
---|
1835 | StdString msg("On writing Local Attributes: "); |
---|
1836 | msg.append("In the context : "); |
---|
1837 | CContext* context = CContext::getCurrent() ; |
---|
1838 | msg.append(context->getId()); msg.append("\n"); |
---|
1839 | msg.append(e.what()); |
---|
1840 | ERROR("CNc4DataOutput::writeLocalAttributes \ |
---|
1841 | (int ibegin, int ni, int jbegin, int nj, StdString domid)", << msg); |
---|
1842 | } |
---|
1843 | |
---|
1844 | } |
---|
1845 | |
---|
1846 | void CNc4DataOutput::writeLocalAttributes_IOIPSL(const StdString& dimXid, const StdString& dimYid, |
---|
1847 | int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size) |
---|
1848 | { |
---|
1849 | CArray<int,1> array(2) ; |
---|
1850 | |
---|
1851 | try |
---|
1852 | { |
---|
1853 | SuperClassWriter::addAttribute("DOMAIN_number_total",size ) ; |
---|
1854 | SuperClassWriter::addAttribute("DOMAIN_number", rank) ; |
---|
1855 | array = SuperClassWriter::getDimension(dimXid) + 1, SuperClassWriter::getDimension(dimYid) + 1; |
---|
1856 | SuperClassWriter::addAttribute("DOMAIN_dimensions_ids",array) ; |
---|
1857 | array=ni_glo,nj_glo ; |
---|
1858 | SuperClassWriter::addAttribute("DOMAIN_size_global", array) ; |
---|
1859 | array=ni,nj ; |
---|
1860 | SuperClassWriter::addAttribute("DOMAIN_size_local", array) ; |
---|
1861 | array=ibegin,jbegin ; |
---|
1862 | SuperClassWriter::addAttribute("DOMAIN_position_first", array) ; |
---|
1863 | array=ibegin+ni-1,jbegin+nj-1 ; |
---|
1864 | SuperClassWriter::addAttribute("DOMAIN_position_last",array) ; |
---|
1865 | array=0,0 ; |
---|
1866 | SuperClassWriter::addAttribute("DOMAIN_halo_size_start", array) ; |
---|
1867 | SuperClassWriter::addAttribute("DOMAIN_halo_size_end", array); |
---|
1868 | SuperClassWriter::addAttribute("DOMAIN_type",string("box")) ; |
---|
1869 | /* |
---|
1870 | SuperClassWriter::addAttribute("DOMAIN_DIM_N001",string("x")) ; |
---|
1871 | SuperClassWriter::addAttribute("DOMAIN_DIM_N002",string("y")) ; |
---|
1872 | SuperClassWriter::addAttribute("DOMAIN_DIM_N003",string("axis_A")) ; |
---|
1873 | SuperClassWriter::addAttribute("DOMAIN_DIM_N004",string("time_counter")) ; |
---|
1874 | */ |
---|
1875 | } |
---|
1876 | catch (CNetCdfException& e) |
---|
1877 | { |
---|
1878 | StdString msg("On writing Local Attributes IOIPSL \n"); |
---|
1879 | msg.append("In the context : "); |
---|
1880 | CContext* context = CContext::getCurrent() ; |
---|
1881 | msg.append(context->getId()); msg.append("\n"); |
---|
1882 | msg.append(e.what()); |
---|
1883 | ERROR("CNc4DataOutput::writeLocalAttributes_IOIPSL \ |
---|
1884 | (int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)", << msg); |
---|
1885 | } |
---|
1886 | } |
---|
1887 | //--------------------------------------------------------------- |
---|
1888 | |
---|
1889 | void CNc4DataOutput:: writeFileAttributes(const StdString & name, |
---|
1890 | const StdString & description, |
---|
1891 | const StdString & conventions, |
---|
1892 | const StdString & production, |
---|
1893 | const StdString & timeStamp) |
---|
1894 | { |
---|
1895 | try |
---|
1896 | { |
---|
1897 | SuperClassWriter::addAttribute("name" , name); |
---|
1898 | SuperClassWriter::addAttribute("description", description); |
---|
1899 | SuperClassWriter::addAttribute("title" , description); |
---|
1900 | SuperClassWriter::addAttribute("Conventions", conventions); |
---|
1901 | SuperClassWriter::addAttribute("production" , production); |
---|
1902 | SuperClassWriter::addAttribute("timeStamp" , timeStamp); |
---|
1903 | } |
---|
1904 | catch (CNetCdfException& e) |
---|
1905 | { |
---|
1906 | StdString msg("On writing File Attributes \n "); |
---|
1907 | msg.append("In the context : "); |
---|
1908 | CContext* context = CContext::getCurrent() ; |
---|
1909 | msg.append(context->getId()); msg.append("\n"); |
---|
1910 | msg.append(e.what()); |
---|
1911 | ERROR("CNc4DataOutput:: writeFileAttributes(const StdString & name, \ |
---|
1912 | const StdString & description, \ |
---|
1913 | const StdString & conventions, \ |
---|
1914 | const StdString & production, \ |
---|
1915 | const StdString & timeStamp)", << msg); |
---|
1916 | } |
---|
1917 | } |
---|
1918 | |
---|
1919 | //--------------------------------------------------------------- |
---|
1920 | |
---|
1921 | void CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, |
---|
1922 | int data_dim, |
---|
1923 | int data_ni, |
---|
1924 | int data_nj, |
---|
1925 | int data_ibegin, |
---|
1926 | int data_jbegin) |
---|
1927 | { |
---|
1928 | try |
---|
1929 | { |
---|
1930 | SuperClassWriter::addAttribute("data_dim" , data_dim , &mask_name); |
---|
1931 | SuperClassWriter::addAttribute("data_ni" , data_ni , &mask_name); |
---|
1932 | SuperClassWriter::addAttribute("data_nj" , data_nj , &mask_name); |
---|
1933 | SuperClassWriter::addAttribute("data_ibegin", data_ibegin, &mask_name); |
---|
1934 | SuperClassWriter::addAttribute("data_jbegin", data_jbegin, &mask_name); |
---|
1935 | } |
---|
1936 | catch (CNetCdfException& e) |
---|
1937 | { |
---|
1938 | StdString msg("On writing Mask Attributes \n "); |
---|
1939 | msg.append("In the context : "); |
---|
1940 | CContext* context = CContext::getCurrent() ; |
---|
1941 | msg.append(context->getId()); msg.append("\n"); |
---|
1942 | msg.append(e.what()); |
---|
1943 | ERROR("CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, \ |
---|
1944 | int data_dim, \ |
---|
1945 | int data_ni, \ |
---|
1946 | int data_nj, \ |
---|
1947 | int data_ibegin, \ |
---|
1948 | int data_jbegin)", << msg); |
---|
1949 | } |
---|
1950 | } |
---|
1951 | |
---|
1952 | ///-------------------------------------------------------------- |
---|
1953 | |
---|
1954 | StdSize CNc4DataOutput::getRecordFromTime(Time time) |
---|
1955 | { |
---|
1956 | std::map<Time, StdSize>::const_iterator it = timeToRecordCache.find(time); |
---|
1957 | if (it == timeToRecordCache.end()) |
---|
1958 | { |
---|
1959 | StdString timeAxisBoundsId("time_counter_bounds"); |
---|
1960 | if (!SuperClassWriter::varExist(timeAxisBoundsId)) |
---|
1961 | timeAxisBoundsId = "time_instant_bounds"; |
---|
1962 | |
---|
1963 | CArray<double,2> timeAxisBounds; |
---|
1964 | SuperClassWriter::getTimeAxisBounds(timeAxisBounds, timeAxisBoundsId, isCollective); |
---|
1965 | |
---|
1966 | StdSize record = 0; |
---|
1967 | double dtime(time); |
---|
1968 | for (int n = timeAxisBounds.extent(1) - 1; n >= 0; n--) |
---|
1969 | { |
---|
1970 | if (timeAxisBounds(1, n) < dtime) |
---|
1971 | { |
---|
1972 | record = n + 1; |
---|
1973 | break; |
---|
1974 | } |
---|
1975 | } |
---|
1976 | it = timeToRecordCache.insert(std::make_pair(time, record)).first; |
---|
1977 | } |
---|
1978 | return it->second; |
---|
1979 | } |
---|
1980 | } // namespace xios |
---|