source: XIOS/trunk/src/node/field.cpp @ 689

Last change on this file since 689 was 687, checked in by mhnguyen, 9 years ago

Implementing auto-generate rectilinear domain

+) Add a new special transformation to generate (complete) rectilinear domain

Test
+) On Curie
+) test_new_feature passed

  • Property copyright set to
    Software name : XIOS (Xml I/O Server)
    http://forge.ipsl.jussieu.fr/ioserver
    Creation date : January 2009
    Licence : CeCCIL version2
    see license file in root directory : Licence_CeCILL_V2-en.txt
    or http://www.cecill.info/licences/Licence_CeCILL_V2-en.html
    Holder : CEA/LSCE (Laboratoire des Sciences du CLimat et de l'Environnement)
    CNRS/IPSL (Institut Pierre Simon Laplace)
    Project Manager : Yann Meurdesoif
    yann.meurdesoif@cea.fr
  • Property svn:executable set to *
File size: 31.4 KB
RevLine 
[219]1#include "field.hpp"
2
[352]3#include "attribute_template.hpp"
4#include "object_template.hpp"
5#include "group_template.hpp"
[219]6
7#include "node_type.hpp"
8#include "calendar_util.hpp"
[352]9#include "message.hpp"
[591]10#include "xios_spl.hpp"
[352]11#include "type.hpp"
[638]12#include "timer.hpp"
[352]13#include "context_client.hpp"
[586]14#include "context_server.hpp"
[459]15#include <set>
[640]16#include "garbage_collector.hpp"
17#include "source_filter.hpp"
18#include "store_filter.hpp"
19#include "file_writer_filter.hpp"
[641]20#include "pass_through_filter.hpp"
[642]21#include "filter_expr_node.hpp"
22#include "lex_parser.hpp"
[643]23#include "temporal_filter.hpp"
[644]24#include "spatial_transform_filter.hpp"
[219]25
[335]26namespace xios{
[509]27
[219]28   /// ////////////////////// Définitions ////////////////////// ///
29
30   CField::CField(void)
31      : CObjectTemplate<CField>(), CFieldAttributes()
32      , refObject(), baseRefObject()
33      , grid(), file()
[645]34      , nstep(0), nstepMax(0)
35      , hasOutputFile(false)
36      , domAxisIds_("", ""), areAllReferenceSolved(false)
[676]37      , useCompressedOutput(false)
[598]38      , isReadDataRequestPending(false)
[640]39   { setVirtualVariableGroup(); }
[219]40
[562]41   CField::CField(const StdString& id)
[219]42      : CObjectTemplate<CField>(id), CFieldAttributes()
43      , refObject(), baseRefObject()
44      , grid(), file()
[645]45      , nstep(0), nstepMax(0)
46      , hasOutputFile(false)
47      , domAxisIds_("", ""), areAllReferenceSolved(false)
[676]48      , useCompressedOutput(false)
[598]49      , isReadDataRequestPending(false)
[562]50   { setVirtualVariableGroup(); }
[219]51
52   CField::~CField(void)
[645]53   {}
[509]54
[472]55  //----------------------------------------------------------------
56
57   void CField::setVirtualVariableGroup(CVariableGroup* newVVariableGroup)
[509]58   {
59      this->vVariableGroup = newVVariableGroup;
[472]60   }
[509]61
[472]62   void CField::setVirtualVariableGroup(void)
63   {
64      this->setVirtualVariableGroup(CVariableGroup::create());
65   }
[509]66
[472]67   CVariableGroup* CField::getVirtualVariableGroup(void) const
68   {
[562]69      return this->vVariableGroup;
[472]70   }
71
[509]72
[472]73   std::vector<CVariable*> CField::getAllVariables(void) const
74   {
[562]75      return this->vVariableGroup->getAllChildren();
[472]76   }
[509]77
[562]78   void CField::solveDescInheritance(bool apply, const CAttributeMap* const parent)
[472]79   {
[562]80      SuperClassAttribute::setAttributes(parent, apply);
[472]81      this->getVirtualVariableGroup()->solveDescInheritance(apply, NULL);
82   }
[219]83
[645]84  //----------------------------------------------------------------
[509]85
[598]86  bool CField::dispatchEvent(CEventServer& event)
[300]87  {
[562]88    if (SuperClass::dispatchEvent(event)) return true;
[300]89    else
90    {
91      switch(event.type)
92      {
93        case EVENT_ID_UPDATE_DATA :
[562]94          recvUpdateData(event);
95          return true;
96          break;
[472]97
[598]98        case EVENT_ID_READ_DATA :
99          recvReadDataRequest(event);
100          return true;
101          break;
[509]102
[598]103        case EVENT_ID_READ_DATA_READY :
104          recvReadDataReady(event);
105          return true;
106          break;
[509]107
[598]108        case EVENT_ID_ADD_VARIABLE :
109          recvAddVariable(event);
110          return true;
111          break;
112
113        case EVENT_ID_ADD_VARIABLE_GROUP :
114          recvAddVariableGroup(event);
115          return true;
116          break;
117
[300]118        default :
[562]119          ERROR("bool CField::dispatchEvent(CEventServer& event)", << "Unknown Event");
120          return false;
[300]121      }
122    }
123  }
[509]124
[638]125  void CField::sendUpdateData(const CArray<double,1>& data)
126  {
127    CTimer::get("XIOS Send Data").resume();
128
129    CContext* context = CContext::getCurrent();
130    CContextClient* client = context->client;
131
132    CEventClient event(getType(), EVENT_ID_UPDATE_DATA);
133
[650]134    map<int, CArray<int,1> >::iterator it;
[638]135    list<CMessage> list_msg;
136    list<CArray<double,1> > list_data;
137
138    if (!grid->doGridHaveDataDistributed())
139    {
140       if (0 == client->clientRank)
141       {
142          for (it = grid->storeIndex_toSrv.begin(); it != grid->storeIndex_toSrv.end(); it++)
143          {
[650]144            int rank = it->first;
145            CArray<int,1>& index = it->second;
[638]146
147            list_msg.push_back(CMessage());
148            list_data.push_back(CArray<double,1>(index.numElements()));
149
150            CArray<double,1>& data_tmp = list_data.back();
151            for (int n = 0; n < data_tmp.numElements(); n++) data_tmp(n) = data(index(n));
152
153            list_msg.back() << getId() << data_tmp;
154            event.push(rank, 1, list_msg.back());
155          }
156          client->sendEvent(event);
157       } else client->sendEvent(event);
158    }
159    else
160    {
161      for (it = grid->storeIndex_toSrv.begin(); it != grid->storeIndex_toSrv.end(); it++)
162      {
[650]163        int rank = it->first;
164        CArray<int,1>& index = it->second;
[638]165
166        list_msg.push_back(CMessage());
167        list_data.push_back(CArray<double,1>(index.numElements()));
168
169        CArray<double,1>& data_tmp = list_data.back();
170        for (int n = 0; n < data_tmp.numElements(); n++) data_tmp(n) = data(index(n));
171
172        list_msg.back() << getId() << data_tmp;
173        event.push(rank, grid->nbSenders[rank], list_msg.back());
174      }
175      client->sendEvent(event);
176    }
[687]177
[638]178    CTimer::get("XIOS Send Data").suspend();
179  }
180
[300]181  void CField::recvUpdateData(CEventServer& event)
182  {
[562]183    vector<int> ranks;
184    vector<CBufferIn*> buffers;
[509]185
[562]186    list<CEventServer::SSubEvent>::iterator it;
187    string fieldId;
[219]188
[562]189    for (it = event.subEvents.begin(); it != event.subEvents.end(); ++it)
[300]190    {
[562]191      int rank = it->rank;
192      CBufferIn* buffer = it->buffer;
193      *buffer >> fieldId;
194      ranks.push_back(rank);
195      buffers.push_back(buffer);
[300]196    }
[562]197    get(fieldId)->recvUpdateData(ranks,buffers);
[300]198  }
[509]199
[300]200  void  CField::recvUpdateData(vector<int>& ranks, vector<CBufferIn*>& buffers)
201  {
202    if (data_srv.empty())
203    {
[650]204      for (map<int, CArray<size_t, 1> >::iterator it = grid->outIndexFromClient.begin(); it != grid->outIndexFromClient.end(); ++it)
[300]205      {
[562]206        int rank = it->first;
[651]207        data_srv.insert(std::make_pair(rank, CArray<double,1>(it->second.numElements())));
208        foperation_srv.insert(pair<int,boost::shared_ptr<func::CFunctor> >(rank,boost::shared_ptr<func::CFunctor>(new func::CInstant(data_srv[rank]))));
[300]209      }
210    }
211
[562]212    CContext* context = CContext::getCurrent();
213    const CDate& currDate = context->getCalendar()->getCurrentDate();
[651]214    const CDate opeDate      = last_operation_srv + freq_operation_srv;
215    const CDate writeDate    = last_Write_srv     + freq_write_srv;
[300]216
217    if (opeDate <= currDate)
218    {
[562]219      for (int n = 0; n < ranks.size(); n++)
[300]220      {
[562]221        CArray<double,1> data_tmp;
222        *buffers[n] >> data_tmp;
223        (*foperation_srv[ranks[n]])(data_tmp);
[300]224      }
[651]225      last_operation_srv = currDate;
[300]226    }
[509]227
[300]228    if (writeDate < (currDate + freq_operation_srv))
229    {
[562]230      for (int n = 0; n < ranks.size(); n++)
[300]231      {
232        this->foperation_srv[ranks[n]]->final();
233      }
[509]234
[651]235      last_Write_srv = writeDate;
[562]236      writeField();
[651]237      lastlast_Write_srv = last_Write_srv;
[300]238    }
239  }
[509]240
[300]241  void CField::writeField(void)
242  {
[562]243    if (!getRelFile()->allDomainEmpty)
[586]244    {
[599]245      if (grid->doGridHaveDataToWrite() || getRelFile()->type == CFile::type_attr::one_file)
[379]246      {
247        getRelFile()->checkFile();
248        this->incrementNStep();
249        getRelFile()->getDataOutput()->writeFieldData(CField::get(this));
250      }
[586]251    }
[300]252  }
[562]253
[598]254  void CField::sendReadDataRequest(void)
255  {
256    CContext* context = CContext::getCurrent();
257    CContextClient* client = context->client;
258
259    CEventClient event(getType(), EVENT_ID_READ_DATA);
260    if (client->isServerLeader())
261    {
262      CMessage msg;
263      msg << getId();
264      const std::list<int>& ranks = client->getRanksServerLeader();
265      for (std::list<int>::const_iterator itRank = ranks.begin(), itRankEnd = ranks.end(); itRank != itRankEnd; ++itRank)
266        event.push(*itRank, 1, msg);
267      client->sendEvent(event);
268    }
269    else client->sendEvent(event);
270
271    lastDataRequestedFromServer = context->getCalendar()->getCurrentDate();
272    isReadDataRequestPending = true;
273  }
274
275  /*!
276  Send request new data read from file if need be, that is the current data is out-of-date.
277  \return true if and only if some data was requested
278  */
279  bool CField::sendReadDataRequestIfNeeded(void)
280  {
281    const CDate& currentDate = CContext::getCurrent()->getCalendar()->getCurrentDate();
282
283    bool requestData = (currentDate >= lastDataRequestedFromServer + file->output_freq.getValue());
284
285    if (requestData)
286      sendReadDataRequest();
287
288    return requestData;
289  }
290
291  void CField::recvReadDataRequest(CEventServer& event)
292  {
293    CBufferIn* buffer = event.subEvents.begin()->buffer;
294    StdString fieldId;
295    *buffer >> fieldId;
296    get(fieldId)->recvReadDataRequest();
297  }
298
299  void CField::recvReadDataRequest(void)
300  {
301    CContext* context = CContext::getCurrent();
302    CContextClient* client = context->client;
303
304    CEventClient event(getType(), EVENT_ID_READ_DATA_READY);
305    std::list<CMessage> msgs;
306
[599]307    bool hasData = readField();
[598]308
[651]309    map<int, CArray<double,1> >::iterator it;
[598]310    for (it = data_srv.begin(); it != data_srv.end(); it++)
311    {
312      msgs.push_back(CMessage());
313      CMessage& msg = msgs.back();
[599]314      msg << getId();
315      if (hasData)
[651]316        msg << getNStep() - 1 << it->second;
[599]317      else
[603]318        msg << size_t(-1);
[598]319      event.push(it->first, grid->nbSenders[it->first], msg);
320    }
321    client->sendEvent(event);
[599]322  }
[598]323
[599]324  bool CField::readField(void)
325  {
326    if (!getRelFile()->allDomainEmpty)
327    {
328      if (grid->doGridHaveDataToWrite() || getRelFile()->type == CFile::type_attr::one_file)
329      {
330        if (data_srv.empty())
331        {
[650]332          for (map<int, CArray<size_t, 1> >::iterator it = grid->outIndexFromClient.begin(); it != grid->outIndexFromClient.end(); ++it)
[651]333            data_srv.insert(std::make_pair(it->first, CArray<double,1>(it->second.numElements())));
[599]334        }
335
336        getRelFile()->checkFile();
337        this->incrementNStep();
338
339        if (!nstepMax)
340        {
341          nstepMax = getRelFile()->getDataInput()->getFieldNbRecords(CField::get(this));
342        }
343
344        if (getNStep() > nstepMax)
345          return false;
346
347        getRelFile()->getDataInput()->readFieldData(CField::get(this));
348      }
349    }
350
351    return true;
[598]352  }
353
354  void CField::recvReadDataReady(CEventServer& event)
355  {
356    string fieldId;
357    vector<int> ranks;
358    vector<CBufferIn*> buffers;
359
360    list<CEventServer::SSubEvent>::iterator it;
361    for (it = event.subEvents.begin(); it != event.subEvents.end(); ++it)
362    {
363      ranks.push_back(it->rank);
364      CBufferIn* buffer = it->buffer;
365      *buffer >> fieldId;
366      buffers.push_back(buffer);
367    }
368    get(fieldId)->recvReadDataReady(ranks, buffers);
369  }
370
371  void CField::recvReadDataReady(vector<int> ranks, vector<CBufferIn*> buffers)
372  {
373    CContext* context = CContext::getCurrent();
374    StdSize record;
[640]375    std::map<int, CArray<double,1> > data;
376
[645]377    bool isEOF = false;
378
[598]379    for (int i = 0; i < ranks.size(); i++)
380    {
381      int rank = ranks[i];
[599]382      *buffers[i] >> record;
[603]383      isEOF = (record == size_t(-1));
[598]384
[599]385      if (!isEOF)
[640]386        *buffers[i] >> data[rank];
387      else
388        break;
389    }
390
391    if (isEOF)
392      serverSourceFilter->signalEndOfStream(lastDataRequestedFromServer);
393    else
394      serverSourceFilter->streamDataFromServer(lastDataRequestedFromServer, data);
395
[598]396    isReadDataRequestPending = false;
397  }
398
[219]399   //----------------------------------------------------------------
400
[347]401   void CField::setRelFile(CFile* _file)
[509]402   {
[459]403      this->file = _file;
[562]404      hasOutputFile = true;
[219]405   }
406
407   //----------------------------------------------------------------
408
[562]409   StdString CField::GetName(void)    { return StdString("field"); }
410   StdString CField::GetDefName(void) { return CField::GetName(); }
411   ENodeType CField::GetType(void)    { return eField; }
[219]412
413   //----------------------------------------------------------------
414
[347]415   CGrid* CField::getRelGrid(void) const
[509]416   {
[562]417      return this->grid;
[219]418   }
419
420   //----------------------------------------------------------------
421
[347]422   CFile* CField::getRelFile(void) const
[509]423   {
[562]424      return this->file;
[219]425   }
[509]426
[266]427   StdSize CField::getNStep(void) const
428   {
[562]429      return this->nstep;
[266]430   }
[509]431
[645]432   func::CFunctor::ETimeType CField::getOperationTimeType() const
433   {
434     return operationTimeType;
435   }
436
437   //----------------------------------------------------------------
438
[266]439   void CField::incrementNStep(void)
440   {
441      this->nstep++;
442   }
[509]443
[321]444   void CField::resetNStep(void)
445   {
[562]446      this->nstep = 0;
[321]447   }
[219]448
[599]449   void CField::resetNStepMax(void)
450   {
451      this->nstepMax = 0;
452   }
453
[219]454   //----------------------------------------------------------------
455
[310]456   bool CField::isActive(void) const
[509]457   {
[562]458      return !this->refObject.empty();
[310]459   }
[562]460
[219]461   //----------------------------------------------------------------
[509]462
[676]463   bool CField::getUseCompressedOutput() const
464   {
465     return useCompressedOutput;
466   }
467
468   void CField::setUseCompressedOutput()
469   {
470     useCompressedOutput = true;
471   }
472
473   //----------------------------------------------------------------
474
[641]475   boost::shared_ptr<COutputPin> CField::getInstantDataFilter()
476   {
477     return instantDataFilter;
478   }
479
480   //----------------------------------------------------------------
481
[509]482   void CField::solveAllReferenceEnabledField(bool doSending2Sever)
[459]483   {
[509]484     CContext* context = CContext::getCurrent();
485     if (!areAllReferenceSolved)
486     {
487        areAllReferenceSolved = true;
[644]488
[510]489        if (context->hasClient)
[509]490        {
491          solveRefInheritance(true);
492          solveBaseReference();
[644]493          if (hasDirectFieldReference()) getDirectFieldReference()->solveAllReferenceEnabledField(false);
[509]494        }
[645]495        else if (context->hasServer)
496          solveServerOperation();
[478]497
[509]498        solveGridReference();
499     }
[687]500     if (context->hasClient)
501     {
502       solveGenerateGrid();
503     }
504
[509]505     solveGridDomainAxisRef(doSending2Sever);
[687]506
[619]507     if (context->hasClient)
508     {
509       solveTransformedGrid();
510     }
[687]511
[623]512     solveCheckMaskIndex(doSending2Sever);
[509]513   }
514
515   std::map<int, StdSize> CField::getGridDataSize()
516   {
517     return grid->getConnectedServerDataSize();
518   }
519
[219]520   //----------------------------------------------------------------
521
[645]522   void CField::solveServerOperation(void)
[219]523   {
[640]524      CContext* context = CContext::getCurrent();
[509]525
[640]526      if (!context->hasServer || !hasOutputFile) return;
527
[645]528      if (freq_op.isEmpty())
529        freq_op.setValue(TimeStep);
[509]530
[538]531      if (freq_offset.isEmpty())
532        freq_offset.setValue(NoneDu);
[219]533
[645]534      freq_operation_srv = file->output_freq.getValue();
535      freq_write_srv     = file->output_freq.getValue();
[509]536
[651]537      lastlast_Write_srv = context->getCalendar()->getInitDate();
538      last_Write_srv     = context->getCalendar()->getInitDate();
539      last_operation_srv = context->getCalendar()->getInitDate();
[509]540
[645]541      const CDuration toffset = freq_operation_srv - freq_offset.getValue() - context->getCalendar()->getTimeStep();
[651]542      last_operation_srv     = last_operation_srv - toffset;
[509]543
[645]544      if (operation.isEmpty())
545        ERROR("void CField::solveServerOperation(void)",
546              << "An operation must be defined for field \"" << getId() << "\".");
[509]547
[645]548      boost::shared_ptr<func::CFunctor> functor;
549      CArray<double, 1> dummyData;
[598]550
[562]551#define DECLARE_FUNCTOR(MType, mtype) \
[645]552      if (operation.getValue().compare(#mtype) == 0) \
[470]553      { \
[645]554        functor.reset(new func::C##MType(dummyData)); \
555      }
[509]556
[219]557#include "functor_type.conf"
[509]558
[645]559      if (!functor)
560        ERROR("void CField::solveServerOperation(void)",
561              << "\"" << operation << "\" is not a valid operation.");
562
563      operationTimeType = functor->timeType();
[219]564   }
[509]565
[219]566   //----------------------------------------------------------------
[640]567
568   /*!
569    * Constructs the graph filter for the field, enabling or not the data output.
570    * This method should not be called more than once with enableOutput equal to true.
571    *
572    * \param gc the garbage collector to use when building the filter graph
573    * \param enableOutput must be true when the field data is to be
574    *                     read by the client or/and written to a file
575    */
576   void CField::buildFilterGraph(CGarbageCollector& gc, bool enableOutput)
577   {
[641]578     if (!areAllReferenceSolved) solveAllReferenceEnabledField(false);
579
[640]580     // Start by building a filter which can provide the field's instant data
581     if (!instantDataFilter)
582     {
[642]583       // Check if we have an expression to parse
584       if (!content.empty())
585       {
586         boost::scoped_ptr<IFilterExprNode> expr(parseExpr(content + '\0'));
587         instantDataFilter = expr->reduce(gc, *this);
588       }
[641]589       // Check if we have a reference on another field
[642]590       else if (!field_ref.isEmpty())
[641]591       {
592         CField* fieldRef = CField::get(field_ref);
593         fieldRef->buildFilterGraph(gc, false);
[644]594
595         std::pair<boost::shared_ptr<CFilter>, boost::shared_ptr<CFilter> > filters;
596         // Check if a spatial transformation is needed
597         if (!grid_ref.isEmpty() && !fieldRef->grid_ref.isEmpty() && grid_ref.getValue() != fieldRef->grid_ref.getValue())
598           filters = CSpatialTransformFilter::buildFilterGraph(gc, fieldRef->grid, grid);
599         else
600           filters.first = filters.second = boost::shared_ptr<CFilter>(new CPassThroughFilter(gc));
601
602         fieldRef->getInstantDataFilter()->connectOutput(filters.first, 0);
603         instantDataFilter = filters.second;
[641]604       }
[640]605       // Check if the data is to be read from a file
[641]606       else if (file && !file->mode.isEmpty() && file->mode == CFile::mode_attr::read)
[640]607         instantDataFilter = serverSourceFilter = boost::shared_ptr<CSourceFilter>(new CSourceFilter(grid));
608       else // The data might be passed from the model
609         instantDataFilter = clientSourceFilter = boost::shared_ptr<CSourceFilter>(new CSourceFilter(grid));
610     }
611
612     // If the field data is to be read by the client or/and written to a file
613     if (enableOutput && !storeFilter && !fileWriterFilter)
614     {
615       if (!read_access.isEmpty() && read_access.getValue())
616       {
617         storeFilter = boost::shared_ptr<CStoreFilter>(new CStoreFilter(gc, CContext::getCurrent(), grid));
618         instantDataFilter->connectOutput(storeFilter, 0);
619       }
620
621       if (file && (file->mode.isEmpty() || file->mode == CFile::mode_attr::write))
622       {
623         fileWriterFilter = boost::shared_ptr<CFileWriterFilter>(new CFileWriterFilter(gc, this));
[643]624         getTemporalDataFilter(gc, file->output_freq)->connectOutput(fileWriterFilter, 0);
[640]625       }
626     }
627   }
628
[642]629   /*!
630    * Returns the source filter to handle a self reference in the field's expression.
631    * If the needed source filter does not exist, it is created, otherwise it is reused.
632    * This method should only be called when building the filter graph corresponding
633    * to the field's expression.
634    *
635    * \param gc the garbage collector to use
636    * \return the output pin corresponding to a self reference
637    */
638   boost::shared_ptr<COutputPin> CField::getSelfReference(CGarbageCollector& gc)
639   {
640     if (instantDataFilter || content.empty())
641       ERROR("COutputPin* CField::getSelfReference(CGarbageCollector& gc)",
642             "Impossible to add a self reference to a field which has already been parsed or which does not have an expression.");
643
644     if (!clientSourceFilter)
645       clientSourceFilter = boost::shared_ptr<CSourceFilter>(new CSourceFilter(grid));
646
647     return clientSourceFilter;
648   }
649
[643]650   /*!
651    * Returns the temporal filter corresponding to the field's temporal operation
652    * for the specified operation frequency. The filter is created if it does not
653    * exist, otherwise it is reused.
654    *
655    * \param gc the garbage collector to use
656    * \param outFreq the operation frequency, i.e. the frequency at which the output data will be computed
657    * \return the output pin corresponding to the requested temporal filter
658    */
659   boost::shared_ptr<COutputPin> CField::getTemporalDataFilter(CGarbageCollector& gc, CDuration outFreq)
660   {
661     std::map<CDuration, boost::shared_ptr<COutputPin> >::iterator it = temporalDataFilters.find(outFreq);
662
663     if (it == temporalDataFilters.end())
664     {
665       if (operation.isEmpty())
666         ERROR("void CField::getTemporalDataFilter(CGarbageCollector& gc, CDuration outFreq)",
667               << "An operation must be defined for field \"" << getId() << "\".");
668
669       if (freq_op.isEmpty())
670         freq_op.setValue(TimeStep);
671       if (freq_offset.isEmpty())
672         freq_offset.setValue(NoneDu);
673
674       const bool ignoreMissingValue = (!detect_missing_value.isEmpty() && !default_value.isEmpty() && detect_missing_value == true);
675
676       boost::shared_ptr<CTemporalFilter> temporalFilter(new CTemporalFilter(gc, operation,
677                                                                             CContext::getCurrent()->getCalendar()->getInitDate(),
678                                                                             freq_op, freq_offset, outFreq,
679                                                                             ignoreMissingValue, ignoreMissingValue ? default_value : 0.0));
680       instantDataFilter->connectOutput(temporalFilter, 0);
681
682       it = temporalDataFilters.insert(std::make_pair(outFreq, temporalFilter)).first;
683     }
684
685     return it->second;
686   }
687
[640]688   //----------------------------------------------------------------
[369]689/*
[562]690   void CField::fromBinary(StdIStream& is)
[219]691   {
692      SuperClass::fromBinary(is);
693#define CLEAR_ATT(name_)\
[369]694      SuperClassAttribute::operator[](#name_)->reset()
[219]695
696         CLEAR_ATT(domain_ref);
697         CLEAR_ATT(axis_ref);
698#undef CLEAR_ATT
699
700   }
[369]701*/
[219]702   //----------------------------------------------------------------
703
704   void CField::solveGridReference(void)
705   {
[347]706      CDomain* domain;
707      CAxis* axis;
[541]708      std::vector<CDomain*> vecDom;
709      std::vector<CAxis*> vecAxis;
[542]710      std::vector<std::string> domList, axisList;
[219]711
712      if (!domain_ref.isEmpty())
713      {
[346]714         if (CDomain::has(domain_ref.getValue()))
[541]715         {
[562]716           domain = CDomain::get(domain_ref.getValue());
[541]717           vecDom.push_back(domain);
718         }
[219]719         else
720            ERROR("CField::solveGridReference(void)",
[421]721                  << "Reference to the domain \'"
[562]722                  << domain_ref.getValue() << "\' is wrong");
[219]723      }
724
725      if (!axis_ref.isEmpty())
726      {
[346]727         if (CAxis::has(axis_ref.getValue()))
[541]728         {
[562]729           axis = CAxis::get(axis_ref.getValue());
[541]730           vecAxis.push_back(axis);
731         }
[219]732         else
733            ERROR("CField::solveGridReference(void)",
[421]734                  << "Reference to the axis \'"
[562]735                  << axis_ref.getValue() <<"\' is wrong");
[219]736      }
737
738      if (!grid_ref.isEmpty())
739      {
[346]740         if (CGrid::has(grid_ref.getValue()))
[541]741         {
[562]742           this->grid = CGrid::get(grid_ref.getValue());
[541]743           domList = grid->getDomainList();
744           axisList = grid->getAxisList();
[600]745           if (domList.empty() && axisList.empty())
[586]746           {
747             this->grid = CGrid::createGrid(vecDom, vecAxis);
748           }
[541]749         }
[219]750         else
751            ERROR("CField::solveGridReference(void)",
[421]752                  << "Reference to the grid \'"
753                  << grid_ref.getValue() << "\' is wrong");
[219]754      }
[586]755      else
756      {
757         this->grid = CGrid::createGrid(vecDom, vecAxis);
758      }
[509]759
[562]760      if (grid_ref.isEmpty() && domain_ref.isEmpty() && axis_ref.isEmpty())
[219]761      {
762            ERROR("CField::solveGridReference(void)",
[540]763                  << "At least one dimension must be defined for this field.");
764      }
[509]765   }
[459]766
[509]767   void CField::solveGridDomainAxisRef(bool checkAtt)
768   {
769     grid->solveDomainAxisRef(checkAtt);
[219]770   }
771
[509]772   void CField::solveCheckMaskIndex(bool doSendingIndex)
773   {
774     grid->checkMaskIndex(doSendingIndex);
775   }
[219]776
[619]777   void CField::solveTransformedGrid()
778   {
[644]779     if (!grid_ref.isEmpty() && hasDirectFieldReference() && !getDirectFieldReference()->grid_ref.isEmpty()
780         && grid_ref.getValue() != getDirectFieldReference()->grid_ref.getValue() && !grid->isTransformed())
781       grid->transformGrid(getDirectFieldReference()->grid);
[619]782   }
783
[687]784   void CField::solveGenerateGrid()
785   {
786     if (!grid_ref.isEmpty() && hasDirectFieldReference() && !getDirectFieldReference()->grid_ref.isEmpty()
787         && grid_ref.getValue() != getDirectFieldReference()->grid_ref.getValue() && !grid->isTransformed())
788       grid->completeGrid(getDirectFieldReference()->grid);
789   }
790
[219]791   ///-------------------------------------------------------------------
792
793   template <>
[562]794   void CGroupTemplate<CField, CFieldGroup, CFieldAttributes>::solveRefInheritance(void)
[219]795   {
796      if (this->group_ref.isEmpty()) return;
797      StdString gref = this->group_ref.getValue();
798
[346]799      if (!CFieldGroup::has(gref))
[219]800         ERROR("CGroupTemplate<CField, CFieldGroup, CFieldAttributes>::solveRefInheritance(void)",
801               << "[ gref = " << gref << "]"
802               << " invalid group name !");
803
[347]804      CFieldGroup* group = CFieldGroup::get(gref);
805      CFieldGroup* owner = CFieldGroup::get(boost::polymorphic_downcast<CFieldGroup*>(this));
[219]806
[347]807      std::vector<CField*> allChildren  = group->getAllChildren();
[562]808      std::vector<CField*>::iterator it = allChildren.begin(), end = allChildren.end();
[509]809
[219]810      for (; it != end; it++)
811      {
[347]812         CField* child = *it;
[562]813         if (child->hasId()) owner->createChild()->field_ref.setValue(child->getId());
[509]814
[219]815      }
816   }
[509]817
[464]818   void CField::scaleFactorAddOffset(double scaleFactor, double addOffset)
819   {
[651]820     map<int, CArray<double,1> >::iterator it;
821     for (it = data_srv.begin(); it != data_srv.end(); it++) it->second = (it->second - addOffset) / scaleFactor;
[464]822   }
[509]823
[599]824   void CField::invertScaleFactorAddOffset(double scaleFactor, double addOffset)
825   {
[651]826     map<int, CArray<double,1> >::iterator it;
827     for (it = data_srv.begin(); it != data_srv.end(); it++) it->second = it->second * scaleFactor + addOffset;
[599]828   }
829
[369]830   void CField::outputField(CArray<double,3>& fieldOut)
[300]831   {
[651]832      map<int, CArray<double,1> >::iterator it;
[562]833      for (it = data_srv.begin(); it != data_srv.end(); it++)
[551]834      {
[651]835        grid->outputField(it->first, it->second, fieldOut.dataFirst());
[551]836      }
[300]837   }
[509]838
[369]839   void CField::outputField(CArray<double,2>& fieldOut)
[300]840   {
[651]841      map<int, CArray<double,1> >::iterator it;
[567]842      for(it=data_srv.begin();it!=data_srv.end();it++)
843      {
[676]844         grid->outputField(it->first, it->second, fieldOut.dataFirst());
[567]845      }
846   }
[219]847
[567]848   void CField::outputField(CArray<double,1>& fieldOut)
849   {
[651]850      map<int, CArray<double,1> >::iterator it;
[567]851
[562]852      for (it = data_srv.begin(); it != data_srv.end(); it++)
[300]853      {
[676]854         grid->outputField(it->first, it->second, fieldOut.dataFirst());
[300]855      }
856   }
[551]857
[599]858   void CField::inputField(CArray<double,3>& fieldOut)
859   {
[651]860      map<int, CArray<double,1> >::iterator it;
[599]861      for (it = data_srv.begin(); it != data_srv.end(); it++)
862      {
[651]863        grid->inputField(it->first, fieldOut.dataFirst(), it->second);
[599]864      }
865   }
866
867   void CField::inputField(CArray<double,2>& fieldOut)
868   {
[651]869      map<int, CArray<double,1> >::iterator it;
[599]870      for(it = data_srv.begin(); it != data_srv.end(); it++)
871      {
[651]872         grid->inputField(it->first, fieldOut.dataFirst(), it->second);
[599]873      }
874   }
875
876   void CField::inputField(CArray<double,1>& fieldOut)
877   {
[651]878      map<int, CArray<double,1> >::iterator it;
[599]879      for (it = data_srv.begin(); it != data_srv.end(); it++)
880      {
[651]881         grid->inputField(it->first, fieldOut.dataFirst(), it->second);
[599]882      }
883   }
884
[676]885   void CField::outputCompressedField(CArray<double,1>& fieldOut)
886   {
887      map<int, CArray<double,1> >::iterator it;
888
889      for (it = data_srv.begin(); it != data_srv.end(); it++)
890      {
891         grid->outputCompressedField(it->first, it->second, fieldOut.dataFirst());
892      }
893   }
894
[219]895   ///-------------------------------------------------------------------
896
[562]897   void CField::parse(xml::CXMLNode& node)
[459]898   {
899      SuperClass::parse(node);
[562]900      if (!node.getContent(this->content))
[472]901      {
[476]902        if (node.goToChildElement())
[472]903        {
[476]904          do
905          {
[562]906            if (node.getElementName() == "variable" || node.getElementName() == "variable_group") this->getVirtualVariableGroup()->parseChild(node);
907          } while (node.goToNextElement());
[476]908          node.goToParentElement();
909        }
[472]910      }
[459]911    }
[509]912
913   /*!
914     This function retrieves Id of corresponding domain_ref and axis_ref (if any)
915   of a field. In some cases, only domain exists but axis doesn't
916   \return pair of Domain and Axis id
917   */
[569]918   const std::pair<StdString,StdString>& CField::getRefDomainAxisIds()
919   {
920     CGrid* cgPtr = getRelGrid();
921     if (NULL != cgPtr)
922     {
923       std::vector<StdString>::iterator it;
924       if (!domain_ref.isEmpty())
925       {
926         std::vector<StdString> domainList = cgPtr->getDomainList();
927         it = std::find(domainList.begin(), domainList.end(), domain_ref.getValue());
928         if (domainList.end() != it) domAxisIds_.first = *it;
929       }
[472]930
[569]931       if (!axis_ref.isEmpty())
932       {
933         std::vector<StdString> axisList = cgPtr->getAxisList();
934         it = std::find(axisList.begin(), axisList.end(), axis_ref.getValue());
935         if (axisList.end() != it) domAxisIds_.second = *it;
936       }
937     }
938     return (domAxisIds_);
939   }
940
[472]941   CVariable* CField::addVariable(const string& id)
942   {
[562]943     return vVariableGroup->createChild(id);
[472]944   }
945
946   CVariableGroup* CField::addVariableGroup(const string& id)
947   {
[562]948     return vVariableGroup->createChildGroup(id);
[472]949   }
950
[509]951   void CField::sendAddAllVariables()
952   {
953     if (!getAllVariables().empty())
954     {
955       // Firstly, it's necessary to add virtual variable group
956       sendAddVariableGroup(getVirtualVariableGroup()->getId());
957
958       // Okie, now we can add to this variable group
959       std::vector<CVariable*> allVar = getAllVariables();
960       std::vector<CVariable*>::const_iterator it = allVar.begin();
961       std::vector<CVariable*>::const_iterator itE = allVar.end();
962
963       for (; it != itE; ++it)
964       {
965         this->sendAddVariable((*it)->getId());
966         (*it)->sendAllAttributesToServer();
967         (*it)->sendValue();
968       }
969     }
970   }
971
[472]972   void CField::sendAddVariable(const string& id)
973   {
[562]974    CContext* context = CContext::getCurrent();
[509]975
[562]976    if (!context->hasServer)
[472]977    {
[562]978       CContextClient* client = context->client;
[472]979
[562]980       CEventClient event(this->getType(),EVENT_ID_ADD_VARIABLE);
[472]981       if (client->isServerLeader())
982       {
[562]983         CMessage msg;
984         msg << this->getId();
985         msg << id;
[595]986         const std::list<int>& ranks = client->getRanksServerLeader();
987         for (std::list<int>::const_iterator itRank = ranks.begin(), itRankEnd = ranks.end(); itRank != itRankEnd; ++itRank)
988           event.push(*itRank,1,msg);
[562]989         client->sendEvent(event);
[472]990       }
[562]991       else client->sendEvent(event);
[472]992    }
993   }
[509]994
[472]995   void CField::sendAddVariableGroup(const string& id)
996   {
[562]997    CContext* context = CContext::getCurrent();
998    if (!context->hasServer)
[472]999    {
[562]1000       CContextClient* client = context->client;
[472]1001
[562]1002       CEventClient event(this->getType(),EVENT_ID_ADD_VARIABLE_GROUP);
[472]1003       if (client->isServerLeader())
1004       {
[562]1005         CMessage msg;
1006         msg << this->getId();
1007         msg << id;
[595]1008         const std::list<int>& ranks = client->getRanksServerLeader();
1009         for (std::list<int>::const_iterator itRank = ranks.begin(), itRankEnd = ranks.end(); itRank != itRankEnd; ++itRank)
1010           event.push(*itRank,1,msg);
[562]1011         client->sendEvent(event);
[472]1012       }
[562]1013       else client->sendEvent(event);
[472]1014    }
1015   }
[509]1016
[472]1017   void CField::recvAddVariable(CEventServer& event)
1018   {
[509]1019
[562]1020      CBufferIn* buffer = event.subEvents.begin()->buffer;
[472]1021      string id;
[562]1022      *buffer >> id;
1023      get(id)->recvAddVariable(*buffer);
[472]1024   }
[509]1025
[472]1026   void CField::recvAddVariable(CBufferIn& buffer)
1027   {
[562]1028      string id;
1029      buffer >> id;
1030      addVariable(id);
[472]1031   }
1032
1033   void CField::recvAddVariableGroup(CEventServer& event)
1034   {
[509]1035
[562]1036      CBufferIn* buffer = event.subEvents.begin()->buffer;
[472]1037      string id;
[562]1038      *buffer >> id;
1039      get(id)->recvAddVariableGroup(*buffer);
[472]1040   }
[509]1041
[472]1042   void CField::recvAddVariableGroup(CBufferIn& buffer)
1043   {
[562]1044      string id;
1045      buffer >> id;
1046      addVariableGroup(id);
[472]1047   }
1048
[540]1049   DEFINE_REF_FUNC(Field,field)
[335]1050} // namespace xios
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