source: XIOS/trunk/src/node/field.cpp @ 734

Last change on this file since 734 was 731, checked in by rlacroix, 9 years ago

Correctly estimate the needed buffer sizes.

The attributes were not considered which could lead to incorrect estimations.

  • Property copyright set to
    Software name : XIOS (Xml I/O Server)
    http://forge.ipsl.jussieu.fr/ioserver
    Creation date : January 2009
    Licence : CeCCIL version2
    see license file in root directory : Licence_CeCILL_V2-en.txt
    or http://www.cecill.info/licences/Licence_CeCILL_V2-en.html
    Holder : CEA/LSCE (Laboratoire des Sciences du CLimat et de l'Environnement)
    CNRS/IPSL (Institut Pierre Simon Laplace)
    Project Manager : Yann Meurdesoif
    yann.meurdesoif@cea.fr
  • Property svn:executable set to *
File size: 31.7 KB
RevLine 
[219]1#include "field.hpp"
2
[352]3#include "attribute_template.hpp"
4#include "object_template.hpp"
5#include "group_template.hpp"
[219]6
7#include "node_type.hpp"
8#include "calendar_util.hpp"
[352]9#include "message.hpp"
[591]10#include "xios_spl.hpp"
[352]11#include "type.hpp"
[638]12#include "timer.hpp"
[352]13#include "context_client.hpp"
[586]14#include "context_server.hpp"
[459]15#include <set>
[640]16#include "garbage_collector.hpp"
17#include "source_filter.hpp"
18#include "store_filter.hpp"
19#include "file_writer_filter.hpp"
[641]20#include "pass_through_filter.hpp"
[642]21#include "filter_expr_node.hpp"
22#include "lex_parser.hpp"
[643]23#include "temporal_filter.hpp"
[644]24#include "spatial_transform_filter.hpp"
[219]25
[335]26namespace xios{
[509]27
[219]28   /// ////////////////////// Définitions ////////////////////// ///
29
30   CField::CField(void)
31      : CObjectTemplate<CField>(), CFieldAttributes()
32      , refObject(), baseRefObject()
33      , grid(), file()
[707]34      , written(false)
[645]35      , nstep(0), nstepMax(0)
36      , hasOutputFile(false)
37      , domAxisIds_("", ""), areAllReferenceSolved(false)
[676]38      , useCompressedOutput(false)
[598]39      , isReadDataRequestPending(false)
[640]40   { setVirtualVariableGroup(); }
[219]41
[562]42   CField::CField(const StdString& id)
[219]43      : CObjectTemplate<CField>(id), CFieldAttributes()
44      , refObject(), baseRefObject()
45      , grid(), file()
[707]46      , written(false)
[645]47      , nstep(0), nstepMax(0)
48      , hasOutputFile(false)
49      , domAxisIds_("", ""), areAllReferenceSolved(false)
[676]50      , useCompressedOutput(false)
[598]51      , isReadDataRequestPending(false)
[562]52   { setVirtualVariableGroup(); }
[219]53
54   CField::~CField(void)
[645]55   {}
[509]56
[472]57  //----------------------------------------------------------------
58
59   void CField::setVirtualVariableGroup(CVariableGroup* newVVariableGroup)
[509]60   {
61      this->vVariableGroup = newVVariableGroup;
[472]62   }
[509]63
[472]64   void CField::setVirtualVariableGroup(void)
65   {
66      this->setVirtualVariableGroup(CVariableGroup::create());
67   }
[509]68
[472]69   CVariableGroup* CField::getVirtualVariableGroup(void) const
70   {
[562]71      return this->vVariableGroup;
[472]72   }
73
[509]74
[472]75   std::vector<CVariable*> CField::getAllVariables(void) const
76   {
[562]77      return this->vVariableGroup->getAllChildren();
[472]78   }
[509]79
[562]80   void CField::solveDescInheritance(bool apply, const CAttributeMap* const parent)
[472]81   {
[562]82      SuperClassAttribute::setAttributes(parent, apply);
[472]83      this->getVirtualVariableGroup()->solveDescInheritance(apply, NULL);
84   }
[219]85
[645]86  //----------------------------------------------------------------
[509]87
[598]88  bool CField::dispatchEvent(CEventServer& event)
[300]89  {
[562]90    if (SuperClass::dispatchEvent(event)) return true;
[300]91    else
92    {
93      switch(event.type)
94      {
95        case EVENT_ID_UPDATE_DATA :
[562]96          recvUpdateData(event);
97          return true;
98          break;
[472]99
[598]100        case EVENT_ID_READ_DATA :
101          recvReadDataRequest(event);
102          return true;
103          break;
[509]104
[598]105        case EVENT_ID_READ_DATA_READY :
106          recvReadDataReady(event);
107          return true;
108          break;
[509]109
[598]110        case EVENT_ID_ADD_VARIABLE :
111          recvAddVariable(event);
112          return true;
113          break;
114
115        case EVENT_ID_ADD_VARIABLE_GROUP :
116          recvAddVariableGroup(event);
117          return true;
118          break;
119
[300]120        default :
[562]121          ERROR("bool CField::dispatchEvent(CEventServer& event)", << "Unknown Event");
122          return false;
[300]123      }
124    }
125  }
[509]126
[638]127  void CField::sendUpdateData(const CArray<double,1>& data)
128  {
129    CTimer::get("XIOS Send Data").resume();
130
131    CContext* context = CContext::getCurrent();
132    CContextClient* client = context->client;
133
134    CEventClient event(getType(), EVENT_ID_UPDATE_DATA);
135
[650]136    map<int, CArray<int,1> >::iterator it;
[638]137    list<CMessage> list_msg;
138    list<CArray<double,1> > list_data;
139
140    if (!grid->doGridHaveDataDistributed())
141    {
142       if (0 == client->clientRank)
143       {
144          for (it = grid->storeIndex_toSrv.begin(); it != grid->storeIndex_toSrv.end(); it++)
145          {
[650]146            int rank = it->first;
147            CArray<int,1>& index = it->second;
[638]148
149            list_msg.push_back(CMessage());
150            list_data.push_back(CArray<double,1>(index.numElements()));
151
152            CArray<double,1>& data_tmp = list_data.back();
153            for (int n = 0; n < data_tmp.numElements(); n++) data_tmp(n) = data(index(n));
154
155            list_msg.back() << getId() << data_tmp;
156            event.push(rank, 1, list_msg.back());
157          }
158          client->sendEvent(event);
159       } else client->sendEvent(event);
160    }
161    else
162    {
163      for (it = grid->storeIndex_toSrv.begin(); it != grid->storeIndex_toSrv.end(); it++)
164      {
[650]165        int rank = it->first;
166        CArray<int,1>& index = it->second;
[638]167
168        list_msg.push_back(CMessage());
169        list_data.push_back(CArray<double,1>(index.numElements()));
170
171        CArray<double,1>& data_tmp = list_data.back();
172        for (int n = 0; n < data_tmp.numElements(); n++) data_tmp(n) = data(index(n));
173
174        list_msg.back() << getId() << data_tmp;
175        event.push(rank, grid->nbSenders[rank], list_msg.back());
176      }
177      client->sendEvent(event);
178    }
[687]179
[638]180    CTimer::get("XIOS Send Data").suspend();
181  }
182
[300]183  void CField::recvUpdateData(CEventServer& event)
184  {
[562]185    vector<int> ranks;
186    vector<CBufferIn*> buffers;
[509]187
[562]188    list<CEventServer::SSubEvent>::iterator it;
189    string fieldId;
[219]190
[562]191    for (it = event.subEvents.begin(); it != event.subEvents.end(); ++it)
[300]192    {
[562]193      int rank = it->rank;
194      CBufferIn* buffer = it->buffer;
195      *buffer >> fieldId;
196      ranks.push_back(rank);
197      buffers.push_back(buffer);
[300]198    }
[562]199    get(fieldId)->recvUpdateData(ranks,buffers);
[300]200  }
[509]201
[300]202  void  CField::recvUpdateData(vector<int>& ranks, vector<CBufferIn*>& buffers)
203  {
204    if (data_srv.empty())
205    {
[650]206      for (map<int, CArray<size_t, 1> >::iterator it = grid->outIndexFromClient.begin(); it != grid->outIndexFromClient.end(); ++it)
[300]207      {
[562]208        int rank = it->first;
[651]209        data_srv.insert(std::make_pair(rank, CArray<double,1>(it->second.numElements())));
210        foperation_srv.insert(pair<int,boost::shared_ptr<func::CFunctor> >(rank,boost::shared_ptr<func::CFunctor>(new func::CInstant(data_srv[rank]))));
[300]211      }
212    }
213
[562]214    CContext* context = CContext::getCurrent();
215    const CDate& currDate = context->getCalendar()->getCurrentDate();
[651]216    const CDate opeDate      = last_operation_srv + freq_operation_srv;
217    const CDate writeDate    = last_Write_srv     + freq_write_srv;
[300]218
219    if (opeDate <= currDate)
220    {
[562]221      for (int n = 0; n < ranks.size(); n++)
[300]222      {
[562]223        CArray<double,1> data_tmp;
224        *buffers[n] >> data_tmp;
225        (*foperation_srv[ranks[n]])(data_tmp);
[300]226      }
[651]227      last_operation_srv = currDate;
[300]228    }
[509]229
[300]230    if (writeDate < (currDate + freq_operation_srv))
231    {
[562]232      for (int n = 0; n < ranks.size(); n++)
[300]233      {
234        this->foperation_srv[ranks[n]]->final();
235      }
[509]236
[651]237      last_Write_srv = writeDate;
[562]238      writeField();
[651]239      lastlast_Write_srv = last_Write_srv;
[300]240    }
241  }
[509]242
[300]243  void CField::writeField(void)
244  {
[562]245    if (!getRelFile()->allDomainEmpty)
[586]246    {
[599]247      if (grid->doGridHaveDataToWrite() || getRelFile()->type == CFile::type_attr::one_file)
[379]248      {
249        getRelFile()->checkFile();
250        this->incrementNStep();
251        getRelFile()->getDataOutput()->writeFieldData(CField::get(this));
252      }
[586]253    }
[300]254  }
[562]255
[598]256  void CField::sendReadDataRequest(void)
257  {
258    CContext* context = CContext::getCurrent();
259    CContextClient* client = context->client;
260
[708]261    lastDataRequestedFromServer = context->getCalendar()->getCurrentDate();
262    isReadDataRequestPending = true;
263
[598]264    CEventClient event(getType(), EVENT_ID_READ_DATA);
265    if (client->isServerLeader())
266    {
267      CMessage msg;
268      msg << getId();
269      const std::list<int>& ranks = client->getRanksServerLeader();
270      for (std::list<int>::const_iterator itRank = ranks.begin(), itRankEnd = ranks.end(); itRank != itRankEnd; ++itRank)
271        event.push(*itRank, 1, msg);
272      client->sendEvent(event);
273    }
274    else client->sendEvent(event);
275  }
276
277  /*!
278  Send request new data read from file if need be, that is the current data is out-of-date.
279  \return true if and only if some data was requested
280  */
281  bool CField::sendReadDataRequestIfNeeded(void)
282  {
283    const CDate& currentDate = CContext::getCurrent()->getCalendar()->getCurrentDate();
284
285    bool requestData = (currentDate >= lastDataRequestedFromServer + file->output_freq.getValue());
286
287    if (requestData)
288      sendReadDataRequest();
289
290    return requestData;
291  }
292
293  void CField::recvReadDataRequest(CEventServer& event)
294  {
295    CBufferIn* buffer = event.subEvents.begin()->buffer;
296    StdString fieldId;
297    *buffer >> fieldId;
298    get(fieldId)->recvReadDataRequest();
299  }
300
301  void CField::recvReadDataRequest(void)
302  {
303    CContext* context = CContext::getCurrent();
304    CContextClient* client = context->client;
305
306    CEventClient event(getType(), EVENT_ID_READ_DATA_READY);
307    std::list<CMessage> msgs;
308
[599]309    bool hasData = readField();
[598]310
[651]311    map<int, CArray<double,1> >::iterator it;
[598]312    for (it = data_srv.begin(); it != data_srv.end(); it++)
313    {
314      msgs.push_back(CMessage());
315      CMessage& msg = msgs.back();
[599]316      msg << getId();
317      if (hasData)
[651]318        msg << getNStep() - 1 << it->second;
[599]319      else
[603]320        msg << size_t(-1);
[598]321      event.push(it->first, grid->nbSenders[it->first], msg);
322    }
323    client->sendEvent(event);
[599]324  }
[598]325
[599]326  bool CField::readField(void)
327  {
328    if (!getRelFile()->allDomainEmpty)
329    {
330      if (grid->doGridHaveDataToWrite() || getRelFile()->type == CFile::type_attr::one_file)
331      {
332        if (data_srv.empty())
333        {
[650]334          for (map<int, CArray<size_t, 1> >::iterator it = grid->outIndexFromClient.begin(); it != grid->outIndexFromClient.end(); ++it)
[651]335            data_srv.insert(std::make_pair(it->first, CArray<double,1>(it->second.numElements())));
[599]336        }
337
338        getRelFile()->checkFile();
339        this->incrementNStep();
340
341        if (!nstepMax)
342        {
343          nstepMax = getRelFile()->getDataInput()->getFieldNbRecords(CField::get(this));
344        }
345
346        if (getNStep() > nstepMax)
347          return false;
348
349        getRelFile()->getDataInput()->readFieldData(CField::get(this));
350      }
351    }
352
353    return true;
[598]354  }
355
356  void CField::recvReadDataReady(CEventServer& event)
357  {
358    string fieldId;
359    vector<int> ranks;
360    vector<CBufferIn*> buffers;
361
362    list<CEventServer::SSubEvent>::iterator it;
363    for (it = event.subEvents.begin(); it != event.subEvents.end(); ++it)
364    {
365      ranks.push_back(it->rank);
366      CBufferIn* buffer = it->buffer;
367      *buffer >> fieldId;
368      buffers.push_back(buffer);
369    }
370    get(fieldId)->recvReadDataReady(ranks, buffers);
371  }
372
373  void CField::recvReadDataReady(vector<int> ranks, vector<CBufferIn*> buffers)
374  {
375    CContext* context = CContext::getCurrent();
376    StdSize record;
[640]377    std::map<int, CArray<double,1> > data;
378
[645]379    bool isEOF = false;
380
[598]381    for (int i = 0; i < ranks.size(); i++)
382    {
383      int rank = ranks[i];
[599]384      *buffers[i] >> record;
[603]385      isEOF = (record == size_t(-1));
[598]386
[599]387      if (!isEOF)
[640]388        *buffers[i] >> data[rank];
389      else
390        break;
391    }
392
393    if (isEOF)
394      serverSourceFilter->signalEndOfStream(lastDataRequestedFromServer);
395    else
396      serverSourceFilter->streamDataFromServer(lastDataRequestedFromServer, data);
397
[598]398    isReadDataRequestPending = false;
399  }
400
[219]401   //----------------------------------------------------------------
402
[347]403   void CField::setRelFile(CFile* _file)
[509]404   {
[459]405      this->file = _file;
[562]406      hasOutputFile = true;
[219]407   }
408
409   //----------------------------------------------------------------
410
[562]411   StdString CField::GetName(void)    { return StdString("field"); }
412   StdString CField::GetDefName(void) { return CField::GetName(); }
413   ENodeType CField::GetType(void)    { return eField; }
[219]414
415   //----------------------------------------------------------------
416
[347]417   CGrid* CField::getRelGrid(void) const
[509]418   {
[562]419      return this->grid;
[219]420   }
421
422   //----------------------------------------------------------------
423
[347]424   CFile* CField::getRelFile(void) const
[509]425   {
[562]426      return this->file;
[219]427   }
[509]428
[266]429   StdSize CField::getNStep(void) const
430   {
[562]431      return this->nstep;
[266]432   }
[509]433
[645]434   func::CFunctor::ETimeType CField::getOperationTimeType() const
435   {
436     return operationTimeType;
437   }
438
439   //----------------------------------------------------------------
440
[266]441   void CField::incrementNStep(void)
442   {
443      this->nstep++;
444   }
[509]445
[707]446   void CField::resetNStep(StdSize nstep /*= 0*/)
[321]447   {
[707]448      this->nstep = nstep;
[321]449   }
[219]450
[599]451   void CField::resetNStepMax(void)
452   {
453      this->nstepMax = 0;
454   }
455
[219]456   //----------------------------------------------------------------
457
[310]458   bool CField::isActive(void) const
[509]459   {
[562]460      return !this->refObject.empty();
[310]461   }
[562]462
[219]463   //----------------------------------------------------------------
[509]464
[707]465   bool CField::wasWritten() const
466   {
467     return written;
468   }
469
470   void CField::setWritten()
471   {
472     written = true;
473   }
474
475   //----------------------------------------------------------------
476
[676]477   bool CField::getUseCompressedOutput() const
478   {
479     return useCompressedOutput;
480   }
481
482   void CField::setUseCompressedOutput()
483   {
484     useCompressedOutput = true;
485   }
486
487   //----------------------------------------------------------------
488
[641]489   boost::shared_ptr<COutputPin> CField::getInstantDataFilter()
490   {
491     return instantDataFilter;
492   }
493
494   //----------------------------------------------------------------
495
[509]496   void CField::solveAllReferenceEnabledField(bool doSending2Sever)
[459]497   {
[509]498     CContext* context = CContext::getCurrent();
499     if (!areAllReferenceSolved)
500     {
501        areAllReferenceSolved = true;
[644]502
[510]503        if (context->hasClient)
[509]504        {
505          solveRefInheritance(true);
506          solveBaseReference();
[644]507          if (hasDirectFieldReference()) getDirectFieldReference()->solveAllReferenceEnabledField(false);
[509]508        }
[645]509        else if (context->hasServer)
510          solveServerOperation();
[478]511
[509]512        solveGridReference();
513     }
[687]514     if (context->hasClient)
515     {
516       solveGenerateGrid();
517     }
518
[509]519     solveGridDomainAxisRef(doSending2Sever);
[687]520
[619]521     if (context->hasClient)
522     {
523       solveTransformedGrid();
524     }
[687]525
[623]526     solveCheckMaskIndex(doSending2Sever);
[509]527   }
528
[731]529   std::map<int, StdSize> CField::getGridAttributesBufferSize()
[509]530   {
[731]531     return grid->getAttributesBufferSize();
[509]532   }
533
[731]534   std::map<int, StdSize> CField::getGridDataBufferSize()
535   {
536     return grid->getDataBufferSize(getId());
537   }
538
[219]539   //----------------------------------------------------------------
540
[645]541   void CField::solveServerOperation(void)
[219]542   {
[640]543      CContext* context = CContext::getCurrent();
[509]544
[640]545      if (!context->hasServer || !hasOutputFile) return;
546
[645]547      if (freq_op.isEmpty())
548        freq_op.setValue(TimeStep);
[509]549
[538]550      if (freq_offset.isEmpty())
551        freq_offset.setValue(NoneDu);
[219]552
[645]553      freq_operation_srv = file->output_freq.getValue();
554      freq_write_srv     = file->output_freq.getValue();
[509]555
[651]556      lastlast_Write_srv = context->getCalendar()->getInitDate();
557      last_Write_srv     = context->getCalendar()->getInitDate();
558      last_operation_srv = context->getCalendar()->getInitDate();
[509]559
[645]560      const CDuration toffset = freq_operation_srv - freq_offset.getValue() - context->getCalendar()->getTimeStep();
[651]561      last_operation_srv     = last_operation_srv - toffset;
[509]562
[645]563      if (operation.isEmpty())
564        ERROR("void CField::solveServerOperation(void)",
565              << "An operation must be defined for field \"" << getId() << "\".");
[509]566
[645]567      boost::shared_ptr<func::CFunctor> functor;
568      CArray<double, 1> dummyData;
[598]569
[562]570#define DECLARE_FUNCTOR(MType, mtype) \
[645]571      if (operation.getValue().compare(#mtype) == 0) \
[470]572      { \
[645]573        functor.reset(new func::C##MType(dummyData)); \
574      }
[509]575
[219]576#include "functor_type.conf"
[509]577
[645]578      if (!functor)
579        ERROR("void CField::solveServerOperation(void)",
580              << "\"" << operation << "\" is not a valid operation.");
581
582      operationTimeType = functor->timeType();
[219]583   }
[509]584
[219]585   //----------------------------------------------------------------
[640]586
587   /*!
588    * Constructs the graph filter for the field, enabling or not the data output.
589    * This method should not be called more than once with enableOutput equal to true.
590    *
591    * \param gc the garbage collector to use when building the filter graph
592    * \param enableOutput must be true when the field data is to be
593    *                     read by the client or/and written to a file
594    */
595   void CField::buildFilterGraph(CGarbageCollector& gc, bool enableOutput)
596   {
[641]597     if (!areAllReferenceSolved) solveAllReferenceEnabledField(false);
598
[640]599     // Start by building a filter which can provide the field's instant data
600     if (!instantDataFilter)
601     {
[642]602       // Check if we have an expression to parse
603       if (!content.empty())
604       {
605         boost::scoped_ptr<IFilterExprNode> expr(parseExpr(content + '\0'));
606         instantDataFilter = expr->reduce(gc, *this);
607       }
[641]608       // Check if we have a reference on another field
[642]609       else if (!field_ref.isEmpty())
[641]610       {
611         CField* fieldRef = CField::get(field_ref);
612         fieldRef->buildFilterGraph(gc, false);
[644]613
614         std::pair<boost::shared_ptr<CFilter>, boost::shared_ptr<CFilter> > filters;
615         // Check if a spatial transformation is needed
616         if (!grid_ref.isEmpty() && !fieldRef->grid_ref.isEmpty() && grid_ref.getValue() != fieldRef->grid_ref.getValue())
617           filters = CSpatialTransformFilter::buildFilterGraph(gc, fieldRef->grid, grid);
618         else
619           filters.first = filters.second = boost::shared_ptr<CFilter>(new CPassThroughFilter(gc));
620
621         fieldRef->getInstantDataFilter()->connectOutput(filters.first, 0);
622         instantDataFilter = filters.second;
[641]623       }
[640]624       // Check if the data is to be read from a file
[641]625       else if (file && !file->mode.isEmpty() && file->mode == CFile::mode_attr::read)
[640]626         instantDataFilter = serverSourceFilter = boost::shared_ptr<CSourceFilter>(new CSourceFilter(grid));
627       else // The data might be passed from the model
628         instantDataFilter = clientSourceFilter = boost::shared_ptr<CSourceFilter>(new CSourceFilter(grid));
629     }
630
631     // If the field data is to be read by the client or/and written to a file
632     if (enableOutput && !storeFilter && !fileWriterFilter)
633     {
634       if (!read_access.isEmpty() && read_access.getValue())
635       {
636         storeFilter = boost::shared_ptr<CStoreFilter>(new CStoreFilter(gc, CContext::getCurrent(), grid));
637         instantDataFilter->connectOutput(storeFilter, 0);
638       }
639
640       if (file && (file->mode.isEmpty() || file->mode == CFile::mode_attr::write))
641       {
642         fileWriterFilter = boost::shared_ptr<CFileWriterFilter>(new CFileWriterFilter(gc, this));
[643]643         getTemporalDataFilter(gc, file->output_freq)->connectOutput(fileWriterFilter, 0);
[640]644       }
645     }
646   }
647
[642]648   /*!
649    * Returns the source filter to handle a self reference in the field's expression.
650    * If the needed source filter does not exist, it is created, otherwise it is reused.
651    * This method should only be called when building the filter graph corresponding
652    * to the field's expression.
653    *
654    * \param gc the garbage collector to use
655    * \return the output pin corresponding to a self reference
656    */
657   boost::shared_ptr<COutputPin> CField::getSelfReference(CGarbageCollector& gc)
658   {
659     if (instantDataFilter || content.empty())
660       ERROR("COutputPin* CField::getSelfReference(CGarbageCollector& gc)",
661             "Impossible to add a self reference to a field which has already been parsed or which does not have an expression.");
662
663     if (!clientSourceFilter)
664       clientSourceFilter = boost::shared_ptr<CSourceFilter>(new CSourceFilter(grid));
665
666     return clientSourceFilter;
667   }
668
[643]669   /*!
670    * Returns the temporal filter corresponding to the field's temporal operation
671    * for the specified operation frequency. The filter is created if it does not
672    * exist, otherwise it is reused.
673    *
674    * \param gc the garbage collector to use
675    * \param outFreq the operation frequency, i.e. the frequency at which the output data will be computed
676    * \return the output pin corresponding to the requested temporal filter
677    */
678   boost::shared_ptr<COutputPin> CField::getTemporalDataFilter(CGarbageCollector& gc, CDuration outFreq)
679   {
680     std::map<CDuration, boost::shared_ptr<COutputPin> >::iterator it = temporalDataFilters.find(outFreq);
681
682     if (it == temporalDataFilters.end())
683     {
684       if (operation.isEmpty())
685         ERROR("void CField::getTemporalDataFilter(CGarbageCollector& gc, CDuration outFreq)",
686               << "An operation must be defined for field \"" << getId() << "\".");
687
688       if (freq_op.isEmpty())
689         freq_op.setValue(TimeStep);
690       if (freq_offset.isEmpty())
691         freq_offset.setValue(NoneDu);
692
693       const bool ignoreMissingValue = (!detect_missing_value.isEmpty() && !default_value.isEmpty() && detect_missing_value == true);
694
695       boost::shared_ptr<CTemporalFilter> temporalFilter(new CTemporalFilter(gc, operation,
696                                                                             CContext::getCurrent()->getCalendar()->getInitDate(),
697                                                                             freq_op, freq_offset, outFreq,
698                                                                             ignoreMissingValue, ignoreMissingValue ? default_value : 0.0));
699       instantDataFilter->connectOutput(temporalFilter, 0);
700
701       it = temporalDataFilters.insert(std::make_pair(outFreq, temporalFilter)).first;
702     }
703
704     return it->second;
705   }
706
[640]707   //----------------------------------------------------------------
[369]708/*
[562]709   void CField::fromBinary(StdIStream& is)
[219]710   {
711      SuperClass::fromBinary(is);
712#define CLEAR_ATT(name_)\
[369]713      SuperClassAttribute::operator[](#name_)->reset()
[219]714
715         CLEAR_ATT(domain_ref);
716         CLEAR_ATT(axis_ref);
717#undef CLEAR_ATT
718
719   }
[369]720*/
[219]721   //----------------------------------------------------------------
722
723   void CField::solveGridReference(void)
724   {
[347]725      CDomain* domain;
726      CAxis* axis;
[541]727      std::vector<CDomain*> vecDom;
728      std::vector<CAxis*> vecAxis;
[542]729      std::vector<std::string> domList, axisList;
[219]730
731      if (!domain_ref.isEmpty())
732      {
[346]733         if (CDomain::has(domain_ref.getValue()))
[541]734         {
[562]735           domain = CDomain::get(domain_ref.getValue());
[541]736           vecDom.push_back(domain);
737         }
[219]738         else
739            ERROR("CField::solveGridReference(void)",
[421]740                  << "Reference to the domain \'"
[562]741                  << domain_ref.getValue() << "\' is wrong");
[219]742      }
743
744      if (!axis_ref.isEmpty())
745      {
[346]746         if (CAxis::has(axis_ref.getValue()))
[541]747         {
[562]748           axis = CAxis::get(axis_ref.getValue());
[541]749           vecAxis.push_back(axis);
750         }
[219]751         else
752            ERROR("CField::solveGridReference(void)",
[421]753                  << "Reference to the axis \'"
[562]754                  << axis_ref.getValue() <<"\' is wrong");
[219]755      }
756
757      if (!grid_ref.isEmpty())
758      {
[346]759         if (CGrid::has(grid_ref.getValue()))
[541]760         {
[562]761           this->grid = CGrid::get(grid_ref.getValue());
[541]762           domList = grid->getDomainList();
763           axisList = grid->getAxisList();
[600]764           if (domList.empty() && axisList.empty())
[586]765           {
766             this->grid = CGrid::createGrid(vecDom, vecAxis);
767           }
[541]768         }
[219]769         else
770            ERROR("CField::solveGridReference(void)",
[421]771                  << "Reference to the grid \'"
772                  << grid_ref.getValue() << "\' is wrong");
[219]773      }
[586]774      else
775      {
776         this->grid = CGrid::createGrid(vecDom, vecAxis);
777      }
[509]778
[562]779      if (grid_ref.isEmpty() && domain_ref.isEmpty() && axis_ref.isEmpty())
[219]780      {
781            ERROR("CField::solveGridReference(void)",
[540]782                  << "At least one dimension must be defined for this field.");
783      }
[509]784   }
[459]785
[509]786   void CField::solveGridDomainAxisRef(bool checkAtt)
787   {
788     grid->solveDomainAxisRef(checkAtt);
[219]789   }
790
[509]791   void CField::solveCheckMaskIndex(bool doSendingIndex)
792   {
793     grid->checkMaskIndex(doSendingIndex);
794   }
[219]795
[619]796   void CField::solveTransformedGrid()
797   {
[644]798     if (!grid_ref.isEmpty() && hasDirectFieldReference() && !getDirectFieldReference()->grid_ref.isEmpty()
799         && grid_ref.getValue() != getDirectFieldReference()->grid_ref.getValue() && !grid->isTransformed())
800       grid->transformGrid(getDirectFieldReference()->grid);
[619]801   }
802
[687]803   void CField::solveGenerateGrid()
804   {
805     if (!grid_ref.isEmpty() && hasDirectFieldReference() && !getDirectFieldReference()->grid_ref.isEmpty()
806         && grid_ref.getValue() != getDirectFieldReference()->grid_ref.getValue() && !grid->isTransformed())
807       grid->completeGrid(getDirectFieldReference()->grid);
808   }
809
[219]810   ///-------------------------------------------------------------------
811
812   template <>
[562]813   void CGroupTemplate<CField, CFieldGroup, CFieldAttributes>::solveRefInheritance(void)
[219]814   {
815      if (this->group_ref.isEmpty()) return;
816      StdString gref = this->group_ref.getValue();
817
[346]818      if (!CFieldGroup::has(gref))
[219]819         ERROR("CGroupTemplate<CField, CFieldGroup, CFieldAttributes>::solveRefInheritance(void)",
820               << "[ gref = " << gref << "]"
821               << " invalid group name !");
822
[347]823      CFieldGroup* group = CFieldGroup::get(gref);
824      CFieldGroup* owner = CFieldGroup::get(boost::polymorphic_downcast<CFieldGroup*>(this));
[219]825
[347]826      std::vector<CField*> allChildren  = group->getAllChildren();
[562]827      std::vector<CField*>::iterator it = allChildren.begin(), end = allChildren.end();
[509]828
[219]829      for (; it != end; it++)
830      {
[347]831         CField* child = *it;
[562]832         if (child->hasId()) owner->createChild()->field_ref.setValue(child->getId());
[509]833
[219]834      }
835   }
[509]836
[464]837   void CField::scaleFactorAddOffset(double scaleFactor, double addOffset)
838   {
[651]839     map<int, CArray<double,1> >::iterator it;
840     for (it = data_srv.begin(); it != data_srv.end(); it++) it->second = (it->second - addOffset) / scaleFactor;
[464]841   }
[509]842
[599]843   void CField::invertScaleFactorAddOffset(double scaleFactor, double addOffset)
844   {
[651]845     map<int, CArray<double,1> >::iterator it;
846     for (it = data_srv.begin(); it != data_srv.end(); it++) it->second = it->second * scaleFactor + addOffset;
[599]847   }
848
[369]849   void CField::outputField(CArray<double,3>& fieldOut)
[300]850   {
[651]851      map<int, CArray<double,1> >::iterator it;
[562]852      for (it = data_srv.begin(); it != data_srv.end(); it++)
[551]853      {
[651]854        grid->outputField(it->first, it->second, fieldOut.dataFirst());
[551]855      }
[300]856   }
[509]857
[369]858   void CField::outputField(CArray<double,2>& fieldOut)
[300]859   {
[651]860      map<int, CArray<double,1> >::iterator it;
[567]861      for(it=data_srv.begin();it!=data_srv.end();it++)
862      {
[676]863         grid->outputField(it->first, it->second, fieldOut.dataFirst());
[567]864      }
865   }
[219]866
[567]867   void CField::outputField(CArray<double,1>& fieldOut)
868   {
[651]869      map<int, CArray<double,1> >::iterator it;
[567]870
[562]871      for (it = data_srv.begin(); it != data_srv.end(); it++)
[300]872      {
[676]873         grid->outputField(it->first, it->second, fieldOut.dataFirst());
[300]874      }
875   }
[551]876
[599]877   void CField::inputField(CArray<double,3>& fieldOut)
878   {
[651]879      map<int, CArray<double,1> >::iterator it;
[599]880      for (it = data_srv.begin(); it != data_srv.end(); it++)
881      {
[651]882        grid->inputField(it->first, fieldOut.dataFirst(), it->second);
[599]883      }
884   }
885
886   void CField::inputField(CArray<double,2>& fieldOut)
887   {
[651]888      map<int, CArray<double,1> >::iterator it;
[599]889      for(it = data_srv.begin(); it != data_srv.end(); it++)
890      {
[651]891         grid->inputField(it->first, fieldOut.dataFirst(), it->second);
[599]892      }
893   }
894
895   void CField::inputField(CArray<double,1>& fieldOut)
896   {
[651]897      map<int, CArray<double,1> >::iterator it;
[599]898      for (it = data_srv.begin(); it != data_srv.end(); it++)
899      {
[651]900         grid->inputField(it->first, fieldOut.dataFirst(), it->second);
[599]901      }
902   }
903
[676]904   void CField::outputCompressedField(CArray<double,1>& fieldOut)
905   {
906      map<int, CArray<double,1> >::iterator it;
907
908      for (it = data_srv.begin(); it != data_srv.end(); it++)
909      {
910         grid->outputCompressedField(it->first, it->second, fieldOut.dataFirst());
911      }
912   }
913
[219]914   ///-------------------------------------------------------------------
915
[562]916   void CField::parse(xml::CXMLNode& node)
[459]917   {
918      SuperClass::parse(node);
[562]919      if (!node.getContent(this->content))
[472]920      {
[476]921        if (node.goToChildElement())
[472]922        {
[476]923          do
924          {
[562]925            if (node.getElementName() == "variable" || node.getElementName() == "variable_group") this->getVirtualVariableGroup()->parseChild(node);
926          } while (node.goToNextElement());
[476]927          node.goToParentElement();
928        }
[472]929      }
[459]930    }
[509]931
932   /*!
933     This function retrieves Id of corresponding domain_ref and axis_ref (if any)
934   of a field. In some cases, only domain exists but axis doesn't
935   \return pair of Domain and Axis id
936   */
[569]937   const std::pair<StdString,StdString>& CField::getRefDomainAxisIds()
938   {
939     CGrid* cgPtr = getRelGrid();
940     if (NULL != cgPtr)
941     {
942       std::vector<StdString>::iterator it;
943       if (!domain_ref.isEmpty())
944       {
945         std::vector<StdString> domainList = cgPtr->getDomainList();
946         it = std::find(domainList.begin(), domainList.end(), domain_ref.getValue());
947         if (domainList.end() != it) domAxisIds_.first = *it;
948       }
[472]949
[569]950       if (!axis_ref.isEmpty())
951       {
952         std::vector<StdString> axisList = cgPtr->getAxisList();
953         it = std::find(axisList.begin(), axisList.end(), axis_ref.getValue());
954         if (axisList.end() != it) domAxisIds_.second = *it;
955       }
956     }
957     return (domAxisIds_);
958   }
959
[472]960   CVariable* CField::addVariable(const string& id)
961   {
[562]962     return vVariableGroup->createChild(id);
[472]963   }
964
965   CVariableGroup* CField::addVariableGroup(const string& id)
966   {
[562]967     return vVariableGroup->createChildGroup(id);
[472]968   }
969
[509]970   void CField::sendAddAllVariables()
971   {
972     if (!getAllVariables().empty())
973     {
974       // Firstly, it's necessary to add virtual variable group
975       sendAddVariableGroup(getVirtualVariableGroup()->getId());
976
977       // Okie, now we can add to this variable group
978       std::vector<CVariable*> allVar = getAllVariables();
979       std::vector<CVariable*>::const_iterator it = allVar.begin();
980       std::vector<CVariable*>::const_iterator itE = allVar.end();
981
982       for (; it != itE; ++it)
983       {
984         this->sendAddVariable((*it)->getId());
985         (*it)->sendAllAttributesToServer();
986         (*it)->sendValue();
987       }
988     }
989   }
990
[472]991   void CField::sendAddVariable(const string& id)
992   {
[562]993    CContext* context = CContext::getCurrent();
[509]994
[562]995    if (!context->hasServer)
[472]996    {
[562]997       CContextClient* client = context->client;
[472]998
[562]999       CEventClient event(this->getType(),EVENT_ID_ADD_VARIABLE);
[472]1000       if (client->isServerLeader())
1001       {
[562]1002         CMessage msg;
1003         msg << this->getId();
1004         msg << id;
[595]1005         const std::list<int>& ranks = client->getRanksServerLeader();
1006         for (std::list<int>::const_iterator itRank = ranks.begin(), itRankEnd = ranks.end(); itRank != itRankEnd; ++itRank)
1007           event.push(*itRank,1,msg);
[562]1008         client->sendEvent(event);
[472]1009       }
[562]1010       else client->sendEvent(event);
[472]1011    }
1012   }
[509]1013
[472]1014   void CField::sendAddVariableGroup(const string& id)
1015   {
[562]1016    CContext* context = CContext::getCurrent();
1017    if (!context->hasServer)
[472]1018    {
[562]1019       CContextClient* client = context->client;
[472]1020
[562]1021       CEventClient event(this->getType(),EVENT_ID_ADD_VARIABLE_GROUP);
[472]1022       if (client->isServerLeader())
1023       {
[562]1024         CMessage msg;
1025         msg << this->getId();
1026         msg << id;
[595]1027         const std::list<int>& ranks = client->getRanksServerLeader();
1028         for (std::list<int>::const_iterator itRank = ranks.begin(), itRankEnd = ranks.end(); itRank != itRankEnd; ++itRank)
1029           event.push(*itRank,1,msg);
[562]1030         client->sendEvent(event);
[472]1031       }
[562]1032       else client->sendEvent(event);
[472]1033    }
1034   }
[509]1035
[472]1036   void CField::recvAddVariable(CEventServer& event)
1037   {
[509]1038
[562]1039      CBufferIn* buffer = event.subEvents.begin()->buffer;
[472]1040      string id;
[562]1041      *buffer >> id;
1042      get(id)->recvAddVariable(*buffer);
[472]1043   }
[509]1044
[472]1045   void CField::recvAddVariable(CBufferIn& buffer)
1046   {
[562]1047      string id;
1048      buffer >> id;
1049      addVariable(id);
[472]1050   }
1051
1052   void CField::recvAddVariableGroup(CEventServer& event)
1053   {
[509]1054
[562]1055      CBufferIn* buffer = event.subEvents.begin()->buffer;
[472]1056      string id;
[562]1057      *buffer >> id;
1058      get(id)->recvAddVariableGroup(*buffer);
[472]1059   }
[509]1060
[472]1061   void CField::recvAddVariableGroup(CBufferIn& buffer)
1062   {
[562]1063      string id;
1064      buffer >> id;
1065      addVariableGroup(id);
[472]1066   }
1067
[540]1068   DEFINE_REF_FUNC(Field,field)
[335]1069} // namespace xios
Note: See TracBrowser for help on using the repository browser.