[591] | 1 | #ifndef __XIOS_CGrid__ |
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| 2 | #define __XIOS_CGrid__ |
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[219] | 3 | |
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[591] | 4 | /// XIOS headers /// |
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| 5 | #include "xios_spl.hpp" |
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[219] | 6 | #include "group_factory.hpp" |
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| 7 | |
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| 8 | #include "declare_group.hpp" |
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| 9 | #include "domain.hpp" |
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| 10 | #include "axis.hpp" |
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[369] | 11 | #include "array_new.hpp" |
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| 12 | #include "attribute_array.hpp" |
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[551] | 13 | #include "distribution_client.hpp" |
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[552] | 14 | #include "distribution_server.hpp" |
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[553] | 15 | #include "server_distribution_description.hpp" |
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| 16 | #include "client_server_mapping.hpp" |
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[567] | 17 | #include "utils.hpp" |
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[619] | 18 | #include "transformation_enum.hpp" |
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[620] | 19 | #include "grid_transformation.hpp" |
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[219] | 20 | |
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[335] | 21 | namespace xios { |
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[509] | 22 | |
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[219] | 23 | /// ////////////////////// Déclarations ////////////////////// /// |
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| 24 | |
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| 25 | class CGridGroup; |
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| 26 | class CGridAttributes; |
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[540] | 27 | class CDomainGroup; |
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| 28 | class CAxisGroup; |
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[219] | 29 | class CGrid; |
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[551] | 30 | class CDistributionClient; |
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[552] | 31 | class CDistributionServer; |
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[553] | 32 | class CServerDistributionDescription; |
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| 33 | class CClientServerMapping; |
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[620] | 34 | class CGridTransformation; |
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[219] | 35 | |
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| 36 | ///-------------------------------------------------------------- |
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| 37 | |
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| 38 | // Declare/Define CGridAttribute |
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| 39 | BEGIN_DECLARE_ATTRIBUTE_MAP(CGrid) |
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| 40 | # include "grid_attribute.conf" |
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| 41 | END_DECLARE_ATTRIBUTE_MAP(CGrid) |
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| 42 | |
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| 43 | ///-------------------------------------------------------------- |
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| 44 | |
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| 45 | class CGrid |
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| 46 | : public CObjectTemplate<CGrid> |
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| 47 | , public CGridAttributes |
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| 48 | { |
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| 49 | /// typedef /// |
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| 50 | typedef CObjectTemplate<CGrid> SuperClass; |
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| 51 | typedef CGridAttributes SuperClassAttribute; |
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| 52 | |
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| 53 | public : |
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| 54 | |
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| 55 | typedef CGridAttributes RelAttributes; |
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| 56 | typedef CGridGroup RelGroup; |
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| 57 | |
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[300] | 58 | enum EEventId |
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| 59 | { |
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[540] | 60 | EVENT_ID_INDEX, EVENT_ID_ADD_DOMAIN, EVENT_ID_ADD_AXIS |
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[650] | 61 | }; |
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[509] | 62 | |
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[619] | 63 | enum EElementType |
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| 64 | { |
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| 65 | GRID_ONLY_AXIS, GRID_ONLY_DOMAIN, GRID_AXIS_DOMAIN |
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| 66 | }; |
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| 67 | |
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[219] | 68 | /// Constructeurs /// |
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| 69 | CGrid(void); |
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[650] | 70 | explicit CGrid(const StdString& id); |
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| 71 | CGrid(const CGrid& grid); // Not implemented yet. |
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| 72 | CGrid(const CGrid* const grid); // Not implemented yet. |
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[219] | 73 | |
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| 74 | /// Traitements /// |
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[509] | 75 | // void solveReference(void); |
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[219] | 76 | |
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[509] | 77 | void solveDomainAxisRef(bool areAttributesChecked); |
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| 78 | |
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| 79 | void checkMaskIndex(bool doCalculateIndex); |
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| 80 | |
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[650] | 81 | // virtual void toBinary (StdOStream& os) const; |
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| 82 | // virtual void fromBinary(StdIStream& is); |
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[219] | 83 | |
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| 84 | /// Tests /// |
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| 85 | bool hasAxis(void) const; |
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| 86 | |
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| 87 | public : |
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| 88 | |
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| 89 | /// Accesseurs /// |
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| 90 | StdSize getDimension(void) const; |
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[509] | 91 | |
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[286] | 92 | StdSize getDataSize(void) const; |
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[219] | 93 | |
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| 94 | /// Entrées-sorties de champs /// |
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[369] | 95 | template <int n> |
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[593] | 96 | void inputField(const CArray<double,n>& field, CArray<double,1>& stored) const; |
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| 97 | template <int n> |
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| 98 | void outputField(const CArray<double,1>& stored, CArray<double,n>& field) const; |
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[509] | 99 | |
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[599] | 100 | void outputField(int rank, const CArray<double,1>& stored, double* field); |
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| 101 | void inputField(int rank, const double* const field, CArray<double,1>& stored); |
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[509] | 102 | |
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[650] | 103 | virtual void parse(xml::CXMLNode& node); |
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[540] | 104 | |
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[219] | 105 | /// Destructeur /// |
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| 106 | virtual ~CGrid(void); |
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| 107 | |
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| 108 | public : |
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| 109 | |
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| 110 | /// Accesseurs statiques /// |
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| 111 | static StdString GetName(void); |
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| 112 | static StdString GetDefName(void); |
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[509] | 113 | |
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[219] | 114 | static ENodeType GetType(void); |
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| 115 | |
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| 116 | /// Instanciateurs Statiques /// |
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[347] | 117 | static CGrid* createGrid(CDomain* domain); |
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| 118 | static CGrid* createGrid(CDomain* domain, CAxis* axis); |
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[622] | 119 | static CGrid* createGrid(std::vector<CDomain*> domains, std::vector<CAxis*> axis, CArray<bool,1> axisDomainOrder = CArray<bool,1>()); |
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[219] | 120 | |
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[300] | 121 | public : |
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[219] | 122 | |
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| 123 | /// Entrées-sorties de champs (interne) /// |
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[650] | 124 | void storeField_arr(const double* const data, CArray<double,1>& stored) const; |
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| 125 | void restoreField_arr(const CArray<double,1>& stored, double* const data) const; |
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[219] | 126 | |
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| 127 | /// Traitements protégés /// |
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| 128 | void computeIndexServer(void); |
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| 129 | void computeIndex(void); |
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[586] | 130 | void computeIndexScalarGrid(); |
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[219] | 131 | |
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[509] | 132 | void solveDomainRef(bool checkAtt); |
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| 133 | void solveAxisRef(bool checkAtt); |
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[540] | 134 | void solveDomainAxisRefInheritance(bool apply = true); |
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[619] | 135 | void solveTransformations(); |
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[509] | 136 | |
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[540] | 137 | void sendAddDomain(const std::string& id=""); |
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| 138 | void sendAddAxis(const std::string& id=""); |
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| 139 | void sendAllDomains(); |
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| 140 | void sendAllAxis(); |
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| 141 | |
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[650] | 142 | static void recvAddDomain(CEventServer& event); |
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| 143 | void recvAddDomain(CBufferIn& buffer); |
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| 144 | static void recvAddAxis(CEventServer& event); |
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| 145 | void recvAddAxis(CBufferIn& buffer); |
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[540] | 146 | |
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[650] | 147 | static bool dispatchEvent(CEventServer& event); |
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| 148 | static void recvIndex(CEventServer& event); |
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| 149 | void recvIndex(vector<int> ranks, vector<CBufferIn*> buffers); |
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| 150 | void sendIndex(void); |
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[586] | 151 | void sendIndexScalarGrid(); |
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[509] | 152 | |
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| 153 | void computeDomConServer(); |
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| 154 | std::map<int, int> getDomConServerSide(); |
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| 155 | std::map<int, StdSize> getConnectedServerDataSize(); |
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[540] | 156 | std::vector<StdString> getDomainList(); |
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| 157 | std::vector<StdString> getAxisList(); |
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| 158 | std::vector<CDomain*> getDomains(); |
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| 159 | std::vector<CAxis*> getAxis(); |
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[551] | 160 | std::vector<int> getAxisOrder(); |
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[567] | 161 | std::vector<int> getGlobalDimension(); |
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[600] | 162 | bool isScalarGrid() const; |
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[620] | 163 | std::vector<int> getAxisPositionInGrid() const; |
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[540] | 164 | |
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[567] | 165 | bool doGridHaveDataToWrite(); |
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| 166 | bool doGridHaveDataDistributed(); |
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| 167 | size_t getWrittenDataSize() const; |
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| 168 | |
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| 169 | const CDistributionServer* getDistributionServer() const; |
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[620] | 170 | const CDistributionClient* getDistributionClient() const; |
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| 171 | CGridTransformation* getTransformations(); |
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[567] | 172 | |
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[632] | 173 | void transformGrid(CGrid* transformGridSrc); |
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[619] | 174 | bool isTransformed(); |
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| 175 | void setTransformed(); |
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| 176 | |
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[219] | 177 | public: |
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| 178 | |
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| 179 | /// Propriétés privées /// |
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| 180 | bool isChecked; |
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[509] | 181 | bool isDomainAxisChecked; |
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[551] | 182 | bool isIndexSent; |
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[219] | 183 | |
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[650] | 184 | CArray<int, 1> storeIndex_client; |
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[509] | 185 | |
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[650] | 186 | map<int, CArray<int, 1> > storeIndex_toSrv; |
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| 187 | map<int,int> nbSenders; |
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[509] | 188 | |
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[650] | 189 | map<int, CArray<size_t, 1> > outIndexFromClient; |
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| 190 | void checkMask(void); |
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[623] | 191 | void modifyMask(const CArray<int,1>& indexToModify); |
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[509] | 192 | |
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[540] | 193 | private: |
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[567] | 194 | template<int N> |
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| 195 | void checkGridMask(CArray<bool,N>& gridMask, |
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| 196 | const std::vector<CArray<bool,2>* >& domainMasks, |
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| 197 | const std::vector<CArray<bool,1>* >& axisMasks, |
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| 198 | const CArray<bool,1>& axisDomainOrder); |
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[623] | 199 | template<int N> |
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| 200 | void modifyGridMask(CArray<bool,N>& gridMask, const CArray<int,1>& indexToModify); |
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| 201 | |
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[540] | 202 | void setVirtualDomainGroup(CDomainGroup* newVDomainGroup); |
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| 203 | void setVirtualDomainGroup(); |
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| 204 | void setVirtualAxisGroup(CAxisGroup* newVAxisGroup); |
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| 205 | void setVirtualAxisGroup(); |
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[567] | 206 | |
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[540] | 207 | void setAxisList(const std::vector<CAxis*> axis = std::vector<CAxis*>()); |
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| 208 | void setDomainList(const std::vector<CDomain*> domains = std::vector<CDomain*>()); |
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| 209 | |
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[567] | 210 | void computeGridGlobalDimension(const std::vector<CDomain*>& domains, |
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| 211 | const std::vector<CAxis*>& axis, |
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| 212 | const CArray<bool,1>& axisDomainOrder); |
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| 213 | |
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[540] | 214 | CDomain* addDomain(const std::string& id); |
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| 215 | CAxis* addAxis(const std::string& id); |
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| 216 | |
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| 217 | CAxisGroup* getVirtualAxisGroup() const; |
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| 218 | CDomainGroup* getVirtualDomainGroup() const; |
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[619] | 219 | |
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| 220 | |
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| 221 | void setTransformationAlgorithms(); |
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| 222 | |
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[567] | 223 | std::vector<int> globalDim_; |
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[540] | 224 | private: |
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| 225 | CDomainGroup* vDomainGroup_; |
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| 226 | CAxisGroup* vAxisGroup_; |
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| 227 | std::vector<std::string> axisList_, domList_; |
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| 228 | bool isAxisListSet, isDomListSet; |
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[567] | 229 | |
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[551] | 230 | CDistributionClient* clientDistribution_; |
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[552] | 231 | CDistributionServer* serverDistribution_; |
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[553] | 232 | CServerDistributionDescription* serverDistributionDescription_; |
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[568] | 233 | CClientServerMapping* clientServerMap_; |
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[567] | 234 | size_t writtenDataSize_; |
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[584] | 235 | std::map<int,size_t> connectedDataSize_; |
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| 236 | std::vector<int> connectedServerRank_; |
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[586] | 237 | bool isDataDistributed_; |
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[619] | 238 | |
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| 239 | bool isTransformed_; |
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[620] | 240 | std::vector<int> axisPositionInGrid_; |
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| 241 | CGridTransformation* transformations_; |
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[219] | 242 | }; // class CGrid |
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| 243 | |
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| 244 | ///-------------------------------------------------------------- |
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| 245 | |
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[369] | 246 | template <int n> |
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[567] | 247 | void CGrid::inputField(const CArray<double,n>& field, CArray<double,1>& stored) const |
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[219] | 248 | { |
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[369] | 249 | if (this->getDataSize() != field.numElements()) |
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| 250 | ERROR("void CGrid::inputField(const CArray<double,n>& field, CArray<double,1>& stored) const", |
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[421] | 251 | << "[ Awaiting size of the data = " << this->getDataSize() << ", " |
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| 252 | << "Received data size = " << field.numElements() << " ] " |
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| 253 | << "The array of data has not the good size !") |
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[650] | 254 | this->storeField_arr(field.dataFirst(), stored); |
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[219] | 255 | } |
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| 256 | |
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[593] | 257 | template <int n> |
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| 258 | void CGrid::outputField(const CArray<double,1>& stored, CArray<double,n>& field) const |
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| 259 | { |
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| 260 | if (this->getDataSize() != field.numElements()) |
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| 261 | ERROR("void CGrid::outputField(const CArray<double,1>& stored, CArray<double,n>& field) const", |
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| 262 | << "[ Size of the data = " << this->getDataSize() << ", " |
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| 263 | << "Output data size = " << field.numElements() << " ] " |
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| 264 | << "The ouput array does not have not the right size!") |
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| 265 | this->restoreField_arr(stored, field.dataFirst()); |
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| 266 | } |
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| 267 | |
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[567] | 268 | template<int N> |
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| 269 | void CGrid::checkGridMask(CArray<bool,N>& gridMask, |
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| 270 | const std::vector<CArray<bool,2>* >& domainMasks, |
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| 271 | const std::vector<CArray<bool,1>* >& axisMasks, |
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| 272 | const CArray<bool,1>& axisDomainOrder) |
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| 273 | { |
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| 274 | int idx = 0; |
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| 275 | int numElement = axisDomainOrder.numElements(); |
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[650] | 276 | int dim = domainMasks.size() * 2 + axisMasks.size(); |
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[567] | 277 | |
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| 278 | std::vector<int> idxLoop(dim,0), indexMap(numElement), eachDimSize(dim); |
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| 279 | std::vector<int> currentIndex(dim); |
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| 280 | int idxDomain = 0, idxAxis = 0; |
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| 281 | for (int i = 0; i < numElement; ++i) |
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| 282 | { |
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| 283 | indexMap[i] = idx; |
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| 284 | if (true == axisDomainOrder(i)) { |
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| 285 | eachDimSize[indexMap[i]] = domainMasks[idxDomain]->extent(0); |
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| 286 | eachDimSize[indexMap[i]+1] = domainMasks[idxDomain]->extent(1); |
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| 287 | idx += 2; ++idxDomain; |
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| 288 | } |
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| 289 | else { |
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| 290 | eachDimSize[indexMap[i]] = axisMasks[idxAxis]->numElements(); |
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| 291 | ++idx; ++idxAxis; |
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| 292 | } |
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| 293 | } |
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| 294 | |
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| 295 | if (!gridMask.isEmpty()) |
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| 296 | { |
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| 297 | for (int i = 0; i < dim; ++i) |
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| 298 | { |
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| 299 | if (gridMask.extent(i) != eachDimSize[i]) |
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| 300 | ERROR("CGrid::checkMask(void)", |
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| 301 | <<"The mask has one dimension whose size is different from the one of the local grid"<<endl |
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| 302 | <<"Local size is "<< i << " " << eachDimSize[i]<<endl |
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| 303 | <<"Mask dimension size is "<<gridMask.extent(i)); |
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| 304 | } |
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| 305 | } |
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| 306 | else { |
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| 307 | CArrayBoolTraits<CArray<bool,N> >::resizeArray(gridMask,eachDimSize); |
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| 308 | gridMask = true; |
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| 309 | } |
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| 310 | |
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| 311 | int ssize = gridMask.numElements(); |
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| 312 | idx = 0; |
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| 313 | while (idx < ssize) |
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| 314 | { |
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| 315 | for (int i = 0; i < dim-1; ++i) |
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| 316 | { |
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| 317 | if (idxLoop[i] == eachDimSize[i]) |
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| 318 | { |
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| 319 | idxLoop[i] = 0; |
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| 320 | ++idxLoop[i+1]; |
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| 321 | } |
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| 322 | } |
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| 323 | |
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| 324 | // Find out outer index |
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| 325 | idxDomain = idxAxis = 0; |
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| 326 | bool maskValue = true; |
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| 327 | for (int i = 0; i < numElement; ++i) |
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| 328 | { |
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| 329 | if (axisDomainOrder(i)) |
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| 330 | { |
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| 331 | maskValue = maskValue && (*domainMasks[idxDomain])(idxLoop[indexMap[i]], |
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| 332 | idxLoop[indexMap[i]+1]); |
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| 333 | ++idxDomain; |
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| 334 | } |
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| 335 | else |
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| 336 | { |
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| 337 | maskValue = maskValue && (*axisMasks[idxAxis])(idxLoop[indexMap[i]]); |
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| 338 | ++idxAxis; |
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| 339 | } |
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| 340 | } |
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| 341 | |
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| 342 | int maskIndex = idxLoop[0]; |
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| 343 | int mulDim = 1; |
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| 344 | for (int k = 1; k < dim; ++k) |
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| 345 | { |
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| 346 | mulDim *= eachDimSize[k-1]; |
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| 347 | maskIndex += idxLoop[k]*mulDim; |
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| 348 | } |
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[623] | 349 | *(gridMask.dataFirst()+maskIndex) &= maskValue; |
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[567] | 350 | |
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| 351 | ++idxLoop[0]; |
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| 352 | ++idx; |
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| 353 | } |
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| 354 | |
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| 355 | } |
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| 356 | |
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[623] | 357 | /*! |
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| 358 | Modify the current mask of grid, the local index to be modified will take value false |
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| 359 | \param [in/out] gridMask current mask of grid |
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| 360 | \param [in] indexToModify local index to modify |
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| 361 | */ |
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| 362 | template<int N> |
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| 363 | void CGrid::modifyGridMask(CArray<bool,N>& gridMask, const CArray<int,1>& indexToModify) |
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| 364 | { |
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| 365 | bool valueToModify = false; |
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| 366 | int num = indexToModify.numElements(); |
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| 367 | for (int idx = 0; idx < num; ++idx) |
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| 368 | { |
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| 369 | *(gridMask.dataFirst()+indexToModify(idx)) = valueToModify; |
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| 370 | } |
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| 371 | } |
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[219] | 372 | ///-------------------------------------------------------------- |
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| 373 | |
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| 374 | // Declare/Define CGridGroup and CGridDefinition |
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| 375 | DECLARE_GROUP(CGrid); |
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| 376 | |
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| 377 | ///-------------------------------------------------------------- |
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| 378 | |
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[335] | 379 | } // namespace xios |
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[219] | 380 | |
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[591] | 381 | #endif // __XIOS_CGrid__ |
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