[591] | 1 | #ifndef __XIOS_CGrid__ |
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| 2 | #define __XIOS_CGrid__ |
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[219] | 3 | |
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[591] | 4 | /// XIOS headers /// |
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| 5 | #include "xios_spl.hpp" |
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[219] | 6 | #include "group_factory.hpp" |
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| 7 | |
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| 8 | #include "declare_group.hpp" |
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| 9 | #include "domain.hpp" |
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| 10 | #include "axis.hpp" |
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[369] | 11 | #include "array_new.hpp" |
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| 12 | #include "attribute_array.hpp" |
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[552] | 13 | #include "distribution_server.hpp" |
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[553] | 14 | #include "client_server_mapping.hpp" |
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[567] | 15 | #include "utils.hpp" |
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[619] | 16 | #include "transformation_enum.hpp" |
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[219] | 17 | |
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[335] | 18 | namespace xios { |
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[509] | 19 | |
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[219] | 20 | /// ////////////////////// Déclarations ////////////////////// /// |
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| 21 | |
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| 22 | class CGridGroup; |
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| 23 | class CGridAttributes; |
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[540] | 24 | class CDomainGroup; |
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| 25 | class CAxisGroup; |
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[219] | 26 | class CGrid; |
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[551] | 27 | class CDistributionClient; |
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[552] | 28 | class CDistributionServer; |
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[553] | 29 | class CServerDistributionDescription; |
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| 30 | class CClientServerMapping; |
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[620] | 31 | class CGridTransformation; |
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[219] | 32 | |
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| 33 | ///-------------------------------------------------------------- |
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| 34 | |
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| 35 | // Declare/Define CGridAttribute |
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| 36 | BEGIN_DECLARE_ATTRIBUTE_MAP(CGrid) |
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| 37 | # include "grid_attribute.conf" |
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| 38 | END_DECLARE_ATTRIBUTE_MAP(CGrid) |
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| 39 | |
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| 40 | ///-------------------------------------------------------------- |
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| 41 | |
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| 42 | class CGrid |
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| 43 | : public CObjectTemplate<CGrid> |
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| 44 | , public CGridAttributes |
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| 45 | { |
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| 46 | /// typedef /// |
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| 47 | typedef CObjectTemplate<CGrid> SuperClass; |
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| 48 | typedef CGridAttributes SuperClassAttribute; |
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| 49 | |
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[676] | 50 | public: |
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[219] | 51 | |
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| 52 | typedef CGridAttributes RelAttributes; |
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| 53 | typedef CGridGroup RelGroup; |
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| 54 | |
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[300] | 55 | enum EEventId |
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| 56 | { |
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[540] | 57 | EVENT_ID_INDEX, EVENT_ID_ADD_DOMAIN, EVENT_ID_ADD_AXIS |
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[650] | 58 | }; |
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[509] | 59 | |
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[619] | 60 | enum EElementType |
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| 61 | { |
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| 62 | GRID_ONLY_AXIS, GRID_ONLY_DOMAIN, GRID_AXIS_DOMAIN |
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| 63 | }; |
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| 64 | |
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[219] | 65 | /// Constructeurs /// |
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| 66 | CGrid(void); |
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[650] | 67 | explicit CGrid(const StdString& id); |
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| 68 | CGrid(const CGrid& grid); // Not implemented yet. |
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| 69 | CGrid(const CGrid* const grid); // Not implemented yet. |
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[219] | 70 | |
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| 71 | /// Traitements /// |
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[509] | 72 | // void solveReference(void); |
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[219] | 73 | |
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[676] | 74 | void checkEligibilityForCompressedOutput(); |
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| 75 | |
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[509] | 76 | void solveDomainAxisRef(bool areAttributesChecked); |
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| 77 | |
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| 78 | void checkMaskIndex(bool doCalculateIndex); |
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| 79 | |
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[650] | 80 | // virtual void toBinary (StdOStream& os) const; |
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| 81 | // virtual void fromBinary(StdIStream& is); |
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[219] | 82 | |
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[676] | 83 | void addRelFileCompressed(const StdString& filename); |
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| 84 | |
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[219] | 85 | /// Tests /// |
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[676] | 86 | bool isCompressible(void) const; |
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| 87 | bool isWrittenCompressed(const StdString& filename) const; |
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[219] | 88 | |
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[676] | 89 | public: |
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[219] | 90 | |
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| 91 | /// Accesseurs /// |
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| 92 | StdSize getDimension(void) const; |
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[509] | 93 | |
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[286] | 94 | StdSize getDataSize(void) const; |
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[219] | 95 | |
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| 96 | /// Entrées-sorties de champs /// |
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[369] | 97 | template <int n> |
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[593] | 98 | void inputField(const CArray<double,n>& field, CArray<double,1>& stored) const; |
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| 99 | template <int n> |
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| 100 | void outputField(const CArray<double,1>& stored, CArray<double,n>& field) const; |
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[509] | 101 | |
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[599] | 102 | void outputField(int rank, const CArray<double,1>& stored, double* field); |
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| 103 | void inputField(int rank, const double* const field, CArray<double,1>& stored); |
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[509] | 104 | |
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[676] | 105 | void outputCompressedField(int rank, const CArray<double,1>& stored, double* field); |
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| 106 | |
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[650] | 107 | virtual void parse(xml::CXMLNode& node); |
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[540] | 108 | |
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[219] | 109 | /// Destructeur /// |
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| 110 | virtual ~CGrid(void); |
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| 111 | |
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[676] | 112 | public: |
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[219] | 113 | |
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| 114 | /// Accesseurs statiques /// |
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| 115 | static StdString GetName(void); |
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| 116 | static StdString GetDefName(void); |
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[509] | 117 | |
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[219] | 118 | static ENodeType GetType(void); |
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| 119 | |
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| 120 | /// Instanciateurs Statiques /// |
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[347] | 121 | static CGrid* createGrid(CDomain* domain); |
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| 122 | static CGrid* createGrid(CDomain* domain, CAxis* axis); |
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[745] | 123 | static CGrid* createGrid(const std::vector<CDomain*>& domains, const std::vector<CAxis*>& axis, |
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| 124 | const CArray<bool,1>& axisDomainOrder = CArray<bool,1>()); |
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| 125 | static CGrid* createGrid(StdString id, const std::vector<CDomain*>& domains, const std::vector<CAxis*>& axis, |
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| 126 | const CArray<bool,1>& axisDomainOrder = CArray<bool,1>()); |
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| 127 | static StdString generateId(const std::vector<CDomain*>& domains, const std::vector<CAxis*>& axis, |
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| 128 | const CArray<bool,1>& axisDomainOrder = CArray<bool,1>()); |
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[823] | 129 | static StdString generateId(const CGrid* gridSrc, const CGrid* gridDest); |
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| 130 | static CGrid* cloneGrid(const StdString& idNewGrid, CGrid* gridSrc); |
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[219] | 131 | |
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[676] | 132 | public: |
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[219] | 133 | |
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| 134 | /// Entrées-sorties de champs (interne) /// |
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[650] | 135 | void storeField_arr(const double* const data, CArray<double,1>& stored) const; |
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| 136 | void restoreField_arr(const CArray<double,1>& stored, double* const data) const; |
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[219] | 137 | |
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| 138 | /// Traitements protégés /// |
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| 139 | void computeIndexServer(void); |
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| 140 | void computeIndex(void); |
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[586] | 141 | void computeIndexScalarGrid(); |
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[676] | 142 | void computeCompressedIndex(); |
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[219] | 143 | |
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[509] | 144 | void solveDomainRef(bool checkAtt); |
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| 145 | void solveAxisRef(bool checkAtt); |
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[540] | 146 | void solveDomainAxisRefInheritance(bool apply = true); |
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[619] | 147 | void solveTransformations(); |
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[775] | 148 | void solveDomainAxisBaseRef(); |
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[509] | 149 | |
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[540] | 150 | void sendAddDomain(const std::string& id=""); |
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| 151 | void sendAddAxis(const std::string& id=""); |
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| 152 | void sendAllDomains(); |
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| 153 | void sendAllAxis(); |
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| 154 | |
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[650] | 155 | static void recvAddDomain(CEventServer& event); |
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| 156 | void recvAddDomain(CBufferIn& buffer); |
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| 157 | static void recvAddAxis(CEventServer& event); |
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| 158 | void recvAddAxis(CBufferIn& buffer); |
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[540] | 159 | |
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[650] | 160 | static bool dispatchEvent(CEventServer& event); |
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| 161 | static void recvIndex(CEventServer& event); |
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| 162 | void recvIndex(vector<int> ranks, vector<CBufferIn*> buffers); |
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| 163 | void sendIndex(void); |
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[586] | 164 | void sendIndexScalarGrid(); |
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[509] | 165 | |
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| 166 | void computeDomConServer(); |
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| 167 | std::map<int, int> getDomConServerSide(); |
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[731] | 168 | std::map<int, StdSize> getAttributesBufferSize(); |
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| 169 | std::map<int, StdSize> getDataBufferSize(const std::string& id = ""); |
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[540] | 170 | std::vector<StdString> getDomainList(); |
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| 171 | std::vector<StdString> getAxisList(); |
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| 172 | std::vector<CDomain*> getDomains(); |
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| 173 | std::vector<CAxis*> getAxis(); |
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[551] | 174 | std::vector<int> getAxisOrder(); |
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[567] | 175 | std::vector<int> getGlobalDimension(); |
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[600] | 176 | bool isScalarGrid() const; |
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[620] | 177 | std::vector<int> getAxisPositionInGrid() const; |
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[540] | 178 | |
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[567] | 179 | bool doGridHaveDataToWrite(); |
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| 180 | bool doGridHaveDataDistributed(); |
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| 181 | size_t getWrittenDataSize() const; |
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[676] | 182 | int getNumberWrittenIndexes() const; |
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| 183 | int getTotalNumberWrittenIndexes() const; |
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| 184 | int getOffsetWrittenIndexes() const; |
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[567] | 185 | |
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| 186 | const CDistributionServer* getDistributionServer() const; |
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[620] | 187 | const CDistributionClient* getDistributionClient() const; |
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| 188 | CGridTransformation* getTransformations(); |
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[567] | 189 | |
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[632] | 190 | void transformGrid(CGrid* transformGridSrc); |
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[775] | 191 | void completeGrid(CGrid* transformGridSrc = 0); |
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[687] | 192 | void doAutoDistribution(CGrid* transformGridSrc); |
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[619] | 193 | bool isTransformed(); |
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| 194 | void setTransformed(); |
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[823] | 195 | void addTransGridSource(CGrid* gridSrc); |
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| 196 | std::map<CGrid*, std::pair<bool,StdString> >& getTransGridSource(); |
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[824] | 197 | bool hasTransform(); |
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[619] | 198 | |
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[219] | 199 | public: |
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| 200 | |
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| 201 | /// Propriétés privées /// |
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| 202 | bool isChecked; |
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[509] | 203 | bool isDomainAxisChecked; |
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[551] | 204 | bool isIndexSent; |
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[219] | 205 | |
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[650] | 206 | CArray<int, 1> storeIndex_client; |
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[509] | 207 | |
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[650] | 208 | map<int, CArray<int, 1> > storeIndex_toSrv; |
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| 209 | map<int,int> nbSenders; |
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[509] | 210 | |
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[676] | 211 | map<int, CArray<size_t, 1> > outIndexFromClient, compressedOutIndexFromClient; |
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[650] | 212 | void checkMask(void); |
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[821] | 213 | void createMask(void); |
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[623] | 214 | void modifyMask(const CArray<int,1>& indexToModify); |
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[509] | 215 | |
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[742] | 216 | void computeGridGlobalDimension(const std::vector<CDomain*>& domains, |
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| 217 | const std::vector<CAxis*>& axis, |
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| 218 | const CArray<bool,1>& axisDomainOrder); |
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| 219 | |
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[540] | 220 | private: |
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[567] | 221 | template<int N> |
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| 222 | void checkGridMask(CArray<bool,N>& gridMask, |
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[664] | 223 | const std::vector<CArray<bool,1>* >& domainMasks, |
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[567] | 224 | const std::vector<CArray<bool,1>* >& axisMasks, |
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[821] | 225 | const CArray<bool,1>& axisDomainOrder, |
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| 226 | bool createMask = false); |
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[623] | 227 | template<int N> |
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| 228 | void modifyGridMask(CArray<bool,N>& gridMask, const CArray<int,1>& indexToModify); |
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| 229 | |
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[540] | 230 | void setVirtualDomainGroup(CDomainGroup* newVDomainGroup); |
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| 231 | void setVirtualDomainGroup(); |
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| 232 | void setVirtualAxisGroup(CAxisGroup* newVAxisGroup); |
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| 233 | void setVirtualAxisGroup(); |
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[567] | 234 | |
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[540] | 235 | void setAxisList(const std::vector<CAxis*> axis = std::vector<CAxis*>()); |
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| 236 | void setDomainList(const std::vector<CDomain*> domains = std::vector<CDomain*>()); |
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| 237 | |
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| 238 | CDomain* addDomain(const std::string& id); |
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| 239 | CAxis* addAxis(const std::string& id); |
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| 240 | |
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| 241 | CAxisGroup* getVirtualAxisGroup() const; |
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| 242 | CDomainGroup* getVirtualDomainGroup() const; |
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[619] | 243 | |
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[657] | 244 | void checkAttributesAfterTransformation(); |
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[619] | 245 | |
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[657] | 246 | |
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[619] | 247 | void setTransformationAlgorithms(); |
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| 248 | |
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[676] | 249 | |
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[823] | 250 | |
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[540] | 251 | private: |
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| 252 | CDomainGroup* vDomainGroup_; |
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| 253 | CAxisGroup* vAxisGroup_; |
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| 254 | std::vector<std::string> axisList_, domList_; |
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| 255 | bool isAxisListSet, isDomListSet; |
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[567] | 256 | |
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[551] | 257 | CDistributionClient* clientDistribution_; |
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[552] | 258 | CDistributionServer* serverDistribution_; |
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[568] | 259 | CClientServerMapping* clientServerMap_; |
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[567] | 260 | size_t writtenDataSize_; |
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[676] | 261 | int numberWrittenIndexes_, totalNumberWrittenIndexes_, offsetWrittenIndexes_; |
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[584] | 262 | std::map<int,size_t> connectedDataSize_; |
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| 263 | std::vector<int> connectedServerRank_; |
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[586] | 264 | bool isDataDistributed_; |
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[657] | 265 | int positionDimensionDistributed_; |
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[676] | 266 | //! True if and only if the data defined on the grid can be outputted in a compressed way |
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| 267 | bool isCompressible_; |
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| 268 | std::set<std::string> relFilesCompressed; |
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[619] | 269 | |
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| 270 | bool isTransformed_; |
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[620] | 271 | std::vector<int> axisPositionInGrid_; |
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| 272 | CGridTransformation* transformations_; |
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[775] | 273 | bool hasDomainAxisBaseRef_; |
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[823] | 274 | std::vector<int> globalDim_; |
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| 275 | std::map<CGrid*, std::pair<bool,StdString> > gridSrc_; |
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[824] | 276 | bool hasTransform_; |
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[219] | 277 | }; // class CGrid |
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| 278 | |
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| 279 | ///-------------------------------------------------------------- |
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| 280 | |
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[369] | 281 | template <int n> |
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[567] | 282 | void CGrid::inputField(const CArray<double,n>& field, CArray<double,1>& stored) const |
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[219] | 283 | { |
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[369] | 284 | if (this->getDataSize() != field.numElements()) |
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| 285 | ERROR("void CGrid::inputField(const CArray<double,n>& field, CArray<double,1>& stored) const", |
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[680] | 286 | << "[ Awaiting data of size = " << this->getDataSize() << ", " |
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[421] | 287 | << "Received data size = " << field.numElements() << " ] " |
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[680] | 288 | << "The data array does not have the right size!") |
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[650] | 289 | this->storeField_arr(field.dataFirst(), stored); |
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[219] | 290 | } |
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| 291 | |
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[593] | 292 | template <int n> |
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| 293 | void CGrid::outputField(const CArray<double,1>& stored, CArray<double,n>& field) const |
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| 294 | { |
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| 295 | if (this->getDataSize() != field.numElements()) |
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| 296 | ERROR("void CGrid::outputField(const CArray<double,1>& stored, CArray<double,n>& field) const", |
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| 297 | << "[ Size of the data = " << this->getDataSize() << ", " |
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| 298 | << "Output data size = " << field.numElements() << " ] " |
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[680] | 299 | << "The ouput array does not have the right size!") |
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[593] | 300 | this->restoreField_arr(stored, field.dataFirst()); |
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| 301 | } |
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| 302 | |
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[567] | 303 | template<int N> |
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| 304 | void CGrid::checkGridMask(CArray<bool,N>& gridMask, |
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[664] | 305 | const std::vector<CArray<bool,1>* >& domainMasks, |
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[567] | 306 | const std::vector<CArray<bool,1>* >& axisMasks, |
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[821] | 307 | const CArray<bool,1>& axisDomainOrder, |
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| 308 | bool createMask) |
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[567] | 309 | { |
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| 310 | int idx = 0; |
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| 311 | int numElement = axisDomainOrder.numElements(); |
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[650] | 312 | int dim = domainMasks.size() * 2 + axisMasks.size(); |
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[664] | 313 | std::vector<CDomain*> domainP = this->getDomains(); |
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[567] | 314 | |
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| 315 | std::vector<int> idxLoop(dim,0), indexMap(numElement), eachDimSize(dim); |
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| 316 | std::vector<int> currentIndex(dim); |
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| 317 | int idxDomain = 0, idxAxis = 0; |
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| 318 | for (int i = 0; i < numElement; ++i) |
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| 319 | { |
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| 320 | indexMap[i] = idx; |
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| 321 | if (true == axisDomainOrder(i)) { |
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[664] | 322 | eachDimSize[indexMap[i]] = domainP[idxDomain]->ni; |
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| 323 | eachDimSize[indexMap[i]+1] = domainP[idxDomain]->nj; |
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[567] | 324 | idx += 2; ++idxDomain; |
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| 325 | } |
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| 326 | else { |
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| 327 | eachDimSize[indexMap[i]] = axisMasks[idxAxis]->numElements(); |
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| 328 | ++idx; ++idxAxis; |
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| 329 | } |
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| 330 | } |
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| 331 | |
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[821] | 332 | if (!gridMask.isEmpty() && !createMask) |
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[567] | 333 | { |
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| 334 | for (int i = 0; i < dim; ++i) |
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| 335 | { |
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| 336 | if (gridMask.extent(i) != eachDimSize[i]) |
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[680] | 337 | ERROR("CGrid::checkMask(void)", |
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| 338 | << "The mask has one dimension whose size is different from the one of the local grid." << std::endl |
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| 339 | << "Local size of dimension " << i << " is " << eachDimSize[i] << "." << std::endl |
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| 340 | << "Mask size for dimension " << i << " is " << gridMask.extent(i) << "."); |
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[567] | 341 | } |
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| 342 | } |
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| 343 | else { |
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| 344 | CArrayBoolTraits<CArray<bool,N> >::resizeArray(gridMask,eachDimSize); |
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| 345 | gridMask = true; |
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| 346 | } |
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| 347 | |
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| 348 | int ssize = gridMask.numElements(); |
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| 349 | idx = 0; |
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| 350 | while (idx < ssize) |
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| 351 | { |
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| 352 | for (int i = 0; i < dim-1; ++i) |
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| 353 | { |
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| 354 | if (idxLoop[i] == eachDimSize[i]) |
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| 355 | { |
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| 356 | idxLoop[i] = 0; |
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| 357 | ++idxLoop[i+1]; |
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| 358 | } |
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| 359 | } |
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| 360 | |
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| 361 | // Find out outer index |
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| 362 | idxDomain = idxAxis = 0; |
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| 363 | bool maskValue = true; |
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| 364 | for (int i = 0; i < numElement; ++i) |
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| 365 | { |
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| 366 | if (axisDomainOrder(i)) |
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| 367 | { |
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[664] | 368 | maskValue = maskValue && (*domainMasks[idxDomain])(idxLoop[indexMap[i]] + idxLoop[indexMap[i]+1] * eachDimSize[indexMap[i]]); |
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[567] | 369 | ++idxDomain; |
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| 370 | } |
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| 371 | else |
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| 372 | { |
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| 373 | maskValue = maskValue && (*axisMasks[idxAxis])(idxLoop[indexMap[i]]); |
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| 374 | ++idxAxis; |
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| 375 | } |
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| 376 | } |
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| 377 | |
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| 378 | int maskIndex = idxLoop[0]; |
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| 379 | int mulDim = 1; |
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| 380 | for (int k = 1; k < dim; ++k) |
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| 381 | { |
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| 382 | mulDim *= eachDimSize[k-1]; |
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| 383 | maskIndex += idxLoop[k]*mulDim; |
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| 384 | } |
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[623] | 385 | *(gridMask.dataFirst()+maskIndex) &= maskValue; |
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[567] | 386 | |
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| 387 | ++idxLoop[0]; |
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| 388 | ++idx; |
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| 389 | } |
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| 390 | |
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| 391 | } |
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| 392 | |
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[623] | 393 | /*! |
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| 394 | Modify the current mask of grid, the local index to be modified will take value false |
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| 395 | \param [in/out] gridMask current mask of grid |
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| 396 | \param [in] indexToModify local index to modify |
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| 397 | */ |
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| 398 | template<int N> |
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| 399 | void CGrid::modifyGridMask(CArray<bool,N>& gridMask, const CArray<int,1>& indexToModify) |
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| 400 | { |
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| 401 | bool valueToModify = false; |
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| 402 | int num = indexToModify.numElements(); |
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| 403 | for (int idx = 0; idx < num; ++idx) |
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| 404 | { |
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| 405 | *(gridMask.dataFirst()+indexToModify(idx)) = valueToModify; |
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| 406 | } |
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| 407 | } |
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[219] | 408 | ///-------------------------------------------------------------- |
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| 409 | |
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| 410 | // Declare/Define CGridGroup and CGridDefinition |
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| 411 | DECLARE_GROUP(CGrid); |
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| 412 | |
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| 413 | ///-------------------------------------------------------------- |
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| 414 | |
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[335] | 415 | } // namespace xios |
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[219] | 416 | |
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[591] | 417 | #endif // __XIOS_CGrid__ |
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