#ifndef __XIOS_CGrid__ #define __XIOS_CGrid__ /// XIOS headers /// #include "xios_spl.hpp" #include "group_factory.hpp" #include "declare_group.hpp" #include "domain.hpp" #include "axis.hpp" #include "array_new.hpp" #include "attribute_array.hpp" #include "distribution_server.hpp" #include "client_server_mapping.hpp" #include "utils.hpp" #include "transformation_enum.hpp" namespace xios { /// ////////////////////// Déclarations ////////////////////// /// class CGridGroup; class CGridAttributes; class CDomainGroup; class CAxisGroup; class CGrid; class CDistributionClient; class CDistributionServer; class CServerDistributionDescription; class CClientServerMapping; class CGridTransformation; ///-------------------------------------------------------------- // Declare/Define CGridAttribute BEGIN_DECLARE_ATTRIBUTE_MAP(CGrid) # include "grid_attribute.conf" END_DECLARE_ATTRIBUTE_MAP(CGrid) ///-------------------------------------------------------------- class CGrid : public CObjectTemplate , public CGridAttributes { /// typedef /// typedef CObjectTemplate SuperClass; typedef CGridAttributes SuperClassAttribute; public: typedef CGridAttributes RelAttributes; typedef CGridGroup RelGroup; enum EEventId { EVENT_ID_INDEX, EVENT_ID_ADD_DOMAIN, EVENT_ID_ADD_AXIS }; enum EElementType { GRID_ONLY_AXIS, GRID_ONLY_DOMAIN, GRID_AXIS_DOMAIN }; /// Constructeurs /// CGrid(void); explicit CGrid(const StdString& id); CGrid(const CGrid& grid); // Not implemented yet. CGrid(const CGrid* const grid); // Not implemented yet. /// Traitements /// // void solveReference(void); void checkEligibilityForCompressedOutput(); void solveDomainAxisRef(bool areAttributesChecked); void checkMaskIndex(bool doCalculateIndex); // virtual void toBinary (StdOStream& os) const; // virtual void fromBinary(StdIStream& is); void addRelFileCompressed(const StdString& filename); /// Tests /// bool isCompressible(void) const; bool isWrittenCompressed(const StdString& filename) const; public: /// Accesseurs /// StdSize getDimension(void) const; StdSize getDataSize(void) const; /// Entrées-sorties de champs /// template void inputField(const CArray& field, CArray& stored) const; template void outputField(const CArray& stored, CArray& field) const; void outputField(int rank, const CArray& stored, double* field); void inputField(int rank, const double* const field, CArray& stored); void outputCompressedField(int rank, const CArray& stored, double* field); virtual void parse(xml::CXMLNode& node); /// Destructeur /// virtual ~CGrid(void); public: /// Accesseurs statiques /// static StdString GetName(void); static StdString GetDefName(void); static ENodeType GetType(void); /// Instanciateurs Statiques /// static CGrid* createGrid(CDomain* domain); static CGrid* createGrid(CDomain* domain, CAxis* axis); static CGrid* createGrid(std::vector domains, std::vector axis, CArray axisDomainOrder = CArray()); public: /// Entrées-sorties de champs (interne) /// void storeField_arr(const double* const data, CArray& stored) const; void restoreField_arr(const CArray& stored, double* const data) const; /// Traitements protégés /// void computeIndexServer(void); void computeIndex(void); void computeIndexScalarGrid(); void computeCompressedIndex(); void solveDomainRef(bool checkAtt); void solveAxisRef(bool checkAtt); void solveDomainAxisRefInheritance(bool apply = true); void solveTransformations(); void sendAddDomain(const std::string& id=""); void sendAddAxis(const std::string& id=""); void sendAllDomains(); void sendAllAxis(); static void recvAddDomain(CEventServer& event); void recvAddDomain(CBufferIn& buffer); static void recvAddAxis(CEventServer& event); void recvAddAxis(CBufferIn& buffer); static bool dispatchEvent(CEventServer& event); static void recvIndex(CEventServer& event); void recvIndex(vector ranks, vector buffers); void sendIndex(void); void sendIndexScalarGrid(); void computeDomConServer(); std::map getDomConServerSide(); std::map getConnectedServerDataSize(); std::vector getDomainList(); std::vector getAxisList(); std::vector getDomains(); std::vector getAxis(); std::vector getAxisOrder(); std::vector getGlobalDimension(); bool isScalarGrid() const; std::vector getAxisPositionInGrid() const; bool doGridHaveDataToWrite(); bool doGridHaveDataDistributed(); size_t getWrittenDataSize() const; int getNumberWrittenIndexes() const; int getTotalNumberWrittenIndexes() const; int getOffsetWrittenIndexes() const; const CDistributionServer* getDistributionServer() const; const CDistributionClient* getDistributionClient() const; CGridTransformation* getTransformations(); void transformGrid(CGrid* transformGridSrc); void completeGrid(CGrid* transformGridSrc); void doAutoDistribution(CGrid* transformGridSrc); bool isTransformed(); void setTransformed(); public: /// Propriétés privées /// bool isChecked; bool isDomainAxisChecked; bool isIndexSent; CArray storeIndex_client; map > storeIndex_toSrv; map nbSenders; map > outIndexFromClient, compressedOutIndexFromClient; void checkMask(void); void modifyMask(const CArray& indexToModify); private: template void checkGridMask(CArray& gridMask, const std::vector* >& domainMasks, const std::vector* >& axisMasks, const CArray& axisDomainOrder); template void modifyGridMask(CArray& gridMask, const CArray& indexToModify); void setVirtualDomainGroup(CDomainGroup* newVDomainGroup); void setVirtualDomainGroup(); void setVirtualAxisGroup(CAxisGroup* newVAxisGroup); void setVirtualAxisGroup(); void setAxisList(const std::vector axis = std::vector()); void setDomainList(const std::vector domains = std::vector()); void computeGridGlobalDimension(const std::vector& domains, const std::vector& axis, const CArray& axisDomainOrder); CDomain* addDomain(const std::string& id); CAxis* addAxis(const std::string& id); CAxisGroup* getVirtualAxisGroup() const; CDomainGroup* getVirtualDomainGroup() const; void checkAttributesAfterTransformation(); void setTransformationAlgorithms(); std::vector globalDim_; private: CDomainGroup* vDomainGroup_; CAxisGroup* vAxisGroup_; std::vector axisList_, domList_; bool isAxisListSet, isDomListSet; CDistributionClient* clientDistribution_; CDistributionServer* serverDistribution_; CClientServerMapping* clientServerMap_; size_t writtenDataSize_; int numberWrittenIndexes_, totalNumberWrittenIndexes_, offsetWrittenIndexes_; std::map connectedDataSize_; std::vector connectedServerRank_; bool isDataDistributed_; int positionDimensionDistributed_; //! True if and only if the data defined on the grid can be outputted in a compressed way bool isCompressible_; std::set relFilesCompressed; bool isTransformed_; std::vector axisPositionInGrid_; CGridTransformation* transformations_; }; // class CGrid ///-------------------------------------------------------------- template void CGrid::inputField(const CArray& field, CArray& stored) const { if (this->getDataSize() != field.numElements()) ERROR("void CGrid::inputField(const CArray& field, CArray& stored) const", << "[ Awaiting data of size = " << this->getDataSize() << ", " << "Received data size = " << field.numElements() << " ] " << "The data array does not have the right size!") this->storeField_arr(field.dataFirst(), stored); } template void CGrid::outputField(const CArray& stored, CArray& field) const { if (this->getDataSize() != field.numElements()) ERROR("void CGrid::outputField(const CArray& stored, CArray& field) const", << "[ Size of the data = " << this->getDataSize() << ", " << "Output data size = " << field.numElements() << " ] " << "The ouput array does not have the right size!") this->restoreField_arr(stored, field.dataFirst()); } template void CGrid::checkGridMask(CArray& gridMask, const std::vector* >& domainMasks, const std::vector* >& axisMasks, const CArray& axisDomainOrder) { int idx = 0; int numElement = axisDomainOrder.numElements(); int dim = domainMasks.size() * 2 + axisMasks.size(); std::vector domainP = this->getDomains(); std::vector idxLoop(dim,0), indexMap(numElement), eachDimSize(dim); std::vector currentIndex(dim); int idxDomain = 0, idxAxis = 0; for (int i = 0; i < numElement; ++i) { indexMap[i] = idx; if (true == axisDomainOrder(i)) { eachDimSize[indexMap[i]] = domainP[idxDomain]->ni; eachDimSize[indexMap[i]+1] = domainP[idxDomain]->nj; idx += 2; ++idxDomain; } else { eachDimSize[indexMap[i]] = axisMasks[idxAxis]->numElements(); ++idx; ++idxAxis; } } if (!gridMask.isEmpty()) { for (int i = 0; i < dim; ++i) { if (gridMask.extent(i) != eachDimSize[i]) ERROR("CGrid::checkMask(void)", << "The mask has one dimension whose size is different from the one of the local grid." << std::endl << "Local size of dimension " << i << " is " << eachDimSize[i] << "." << std::endl << "Mask size for dimension " << i << " is " << gridMask.extent(i) << "."); } } else { CArrayBoolTraits >::resizeArray(gridMask,eachDimSize); gridMask = true; } int ssize = gridMask.numElements(); idx = 0; while (idx < ssize) { for (int i = 0; i < dim-1; ++i) { if (idxLoop[i] == eachDimSize[i]) { idxLoop[i] = 0; ++idxLoop[i+1]; } } // Find out outer index idxDomain = idxAxis = 0; bool maskValue = true; for (int i = 0; i < numElement; ++i) { if (axisDomainOrder(i)) { maskValue = maskValue && (*domainMasks[idxDomain])(idxLoop[indexMap[i]] + idxLoop[indexMap[i]+1] * eachDimSize[indexMap[i]]); ++idxDomain; } else { maskValue = maskValue && (*axisMasks[idxAxis])(idxLoop[indexMap[i]]); ++idxAxis; } } int maskIndex = idxLoop[0]; int mulDim = 1; for (int k = 1; k < dim; ++k) { mulDim *= eachDimSize[k-1]; maskIndex += idxLoop[k]*mulDim; } *(gridMask.dataFirst()+maskIndex) &= maskValue; ++idxLoop[0]; ++idx; } } /*! Modify the current mask of grid, the local index to be modified will take value false \param [in/out] gridMask current mask of grid \param [in] indexToModify local index to modify */ template void CGrid::modifyGridMask(CArray& gridMask, const CArray& indexToModify) { bool valueToModify = false; int num = indexToModify.numElements(); for (int idx = 0; idx < num; ++idx) { *(gridMask.dataFirst()+indexToModify(idx)) = valueToModify; } } ///-------------------------------------------------------------- // Declare/Define CGridGroup and CGridDefinition DECLARE_GROUP(CGrid); ///-------------------------------------------------------------- } // namespace xios #endif // __XIOS_CGrid__