# # ChangeLog for XIOS/dev # # Generated by Trac 1.0.1 # 04/26/24 05:47:06 Mon, 12 Mar 2018 17:45:57 GMT ymipsl [1457] * XIOS/dev/XIOS_DEV_CMIP6/src/config/node_type.conf (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/config/reorder_domain_attribute.conf (added) * XIOS/dev/XIOS_DEV_CMIP6/src/generate_fortran_interface.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/group_factory_decl.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/group_template_decl.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/domain.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/node_enum.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/node_type.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/reorder_domain.cpp (added) * XIOS/dev/XIOS_DEV_CMIP6/src/node/reorder_domain.hpp (added) * XIOS/dev/XIOS_DEV_CMIP6/src/node/transformation_enum.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/object_factory_decl.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/object_template_decl.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/algo_types.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/domain_algorithm_reorder.cpp (added) * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/domain_algorithm_reorder.hpp (added) * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/grid_transformation_selector.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/type/type_util.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/xml_parser_decl.cpp (modified) Add new domain filter : reorder_domain Reoder the data along the global ... Mon, 12 Mar 2018 17:40:28 GMT ymipsl [1456] * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_output.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_output.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/io/onetcdf4.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/io/onetcdf4.hpp (modified) Add compression for lon, lat and axis. Activated only if file attribute ... Mon, 12 Mar 2018 17:16:22 GMT oabramkina [1455] * XIOS/dev/XIOS_DEV_CMIP6/tools/archive/boost.tar.gz (modified) * XIOS/trunk/tools/archive/boost.tar.gz (modified) Updating boost to 1.66. Fri, 09 Mar 2018 17:44:33 GMT ymipsl [1454] * XIOS/dev/XIOS_DEV_CMIP6/src/io/netCdfInterface.cpp (modified) Activate shuffling for netcdf4 compression. YM Fri, 09 Mar 2018 10:04:30 GMT oabramkina [1453] * XIOS/dev/XIOS_DEV_CMIP6/arch/arch-X64_CURIE.env (modified) * XIOS/dev/XIOS_DEV_CMIP6/arch/arch-X64_CURIE.path (modified) * XIOS/dev/XIOS_DEV_CMIP6/arch/arch-XC30_Cray.env (modified) * XIOS/dev/XIOS_DEV_CMIP6/arch/arch-XC30_Cray.path (modified) * XIOS/dev/XIOS_DEV_CMIP6/make_xios (modified) DEV_CMIP6: adding a compilation option '--use_extern_blitz' to allow ... Thu, 08 Mar 2018 16:46:28 GMT oabramkina [1451] * XIOS/dev/XIOS_DEV_CMIP6/make_xios (modified) * XIOS/trunk/make_xios (modified) And adding a mistakenly deleted line in r1450. Thu, 08 Mar 2018 16:30:28 GMT oabramkina [1450] * XIOS/dev/XIOS_DEV_CMIP6/make_xios (modified) * XIOS/trunk/make_xios (modified) Adding back light memory tracking to trunk and adding it to dev_cmip6. Thu, 08 Mar 2018 15:48:55 GMT oabramkina [1449] * XIOS/dev/XIOS_DEV_CMIP6/arch/arch-GCC_LINUX.env (modified) * XIOS/dev/XIOS_DEV_CMIP6/arch/arch-GCC_LINUX.path (modified) * XIOS/dev/XIOS_DEV_CMIP6/arch/arch-X64_CURIE.env (modified) * XIOS/dev/XIOS_DEV_CMIP6/arch/arch-X64_CURIE.path (modified) * XIOS/dev/XIOS_DEV_CMIP6/arch/arch-XC30_Cray.env (modified) * XIOS/dev/XIOS_DEV_CMIP6/arch/arch-XC30_Cray.path (modified) * XIOS/dev/XIOS_DEV_CMIP6/bld.cfg (modified) * XIOS/dev/XIOS_DEV_CMIP6/make_xios (modified) DEV_CMIP6: adding a compilation option '--use_extern_boost' to allow ... Tue, 06 Mar 2018 10:36:29 GMT oabramkina [1447] * XIOS/dev/XIOS_DEV_CMIP6/src/io/inetcdf4.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_input.cpp (modified) Few bugfixes for reading: - still adjusting the algorithm on ... Mon, 05 Mar 2018 15:00:56 GMT oabramkina [1446] * XIOS/dev/XIOS_DEV_CMIP6/bld.cfg (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_output.cpp (modified) Adding a scalar to the coordinate list of a variable only if the scalar ... Fri, 02 Mar 2018 09:48:21 GMT oabramkina [1445] * XIOS/dev/XIOS_DEV_CMIP6/src/io/inetcdf4.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/io/inetcdf4.hpp (modified) Changes concerning reading of a grid. With introduction of new grid ... Wed, 28 Feb 2018 16:50:04 GMT oabramkina [1444] * XIOS/dev/XIOS_DEV_CMIP6/src/io/inetcdf4.cpp (modified) Correcting a bug on reading unstructured domains introduced in r1443. ... Wed, 28 Feb 2018 10:18:22 GMT oabramkina [1443] * XIOS/dev/XIOS_DEV_CMIP6/src/io/inetcdf4.cpp (modified) Bugfix on reading of rectilinear domains: taking into account that now ... Mon, 26 Feb 2018 09:35:10 GMT oabramkina [1442] * XIOS/dev/XIOS_DEV_CMIP6/src/io/onetcdf4_impl.hpp (modified) Initializing int to 0 in r1441. Fri, 23 Feb 2018 13:35:39 GMT oabramkina [1441] * XIOS/dev/XIOS_DEV_CMIP6/src/io/onetcdf4_impl.hpp (modified) Properly terminating a string on writing. Fri, 23 Feb 2018 10:15:33 GMT ymipsl [1440] * XIOS/dev/XIOS_DEV_CMIP6/src/filter/temporal_filter.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/filter/temporal_filter.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/field.cpp (modified) Bug fix : for temporal filter, to detect_missing value, default_value ... Thu, 22 Feb 2018 17:21:22 GMT oabramkina [1439] * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_output.cpp (modified) Adding a check on existence of dimension str_len. Thu, 22 Feb 2018 11:06:06 GMT ymipsl [1438] * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/generic_algorithm_transformation.cpp (modified) Non Distributed transformation : fix small typo that may lead to big ... Thu, 22 Feb 2018 09:46:48 GMT oabramkina [1437] * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_output.cpp (modified) Bugfix for writing of axes: writing of axis values were attempted when ... Wed, 21 Feb 2018 10:10:56 GMT oabramkina [1436] * XIOS/dev/XIOS_DEV_CMIP6/src/config/scalar_attribute.conf (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_output.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/scalar.hpp (modified) Corrections for scalar bounds. Wed, 21 Feb 2018 08:09:30 GMT oabramkina [1435] * XIOS/dev/XIOS_DEV_CMIP6/src/config/axis_attribute.conf (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/config/scalar_attribute.conf (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_output.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/io/onetcdf4_impl.hpp (modified) Few more grid attributes introduced in addition to r1430. Mon, 19 Feb 2018 18:11:47 GMT oabramkina [1434] * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_input.cpp (modified) Fixing a bug in reading of rectilinear domains introduced in r1430. Mon, 19 Feb 2018 15:58:17 GMT oabramkina [1433] * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_output.cpp (modified) Bugfix on writing of an axis introduced in r1430. Mon, 19 Feb 2018 14:31:48 GMT oabramkina [1432] * XIOS/dev/XIOS_DEV_CMIP6/src/io/inetcdf4.cpp (modified) Bugfix for reading related to introduction of new attributes in r1430. ... Mon, 19 Feb 2018 09:22:30 GMT ymipsl [1431] * XIOS/dev/XIOS_DEV_CMIP6/src/node/domain.cpp (modified) Local mask computation must not take into account zoom attributes. YM Fri, 16 Feb 2018 15:32:08 GMT oabramkina [1430] * XIOS/dev/XIOS_DEV_CMIP6/src/config/axis_attribute.conf (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/config/domain_attribute.conf (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/config/scalar_attribute.conf (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/io/inetcdf4.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_input.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_output.cpp (modified) Adding new grid-related attributes. Fri, 16 Feb 2018 14:08:48 GMT ymipsl [1429] * XIOS/dev/XIOS_DEV_CMIP6/src/node/domain.cpp (modified) Bug fix in computeLocalMask domain function. Bad interaction with data ... Wed, 14 Feb 2018 16:38:47 GMT oabramkina [1428] * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_input.cpp (modified) Bugfix for reading of curvilinear and unstructured domains. Since r1419 ... Wed, 14 Feb 2018 09:08:41 GMT oabramkina [1427] * XIOS/dev/XIOS_DEV_CMIP6/src/node/domain.cpp (modified) Bugfix: correcting erroneous memory deallocations of r1419. Tue, 13 Feb 2018 10:30:57 GMT ymipsl [1426] * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/generic_algorithm_transformation.cpp (modified) Bug fix for dynamical transformations. YM Fri, 09 Feb 2018 14:37:13 GMT ymipsl [1425] * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/generic_algorithm_transformation.cpp (modified) Non Distributed transformation : Bug fix introduced in rev1420. YM Fri, 09 Feb 2018 11:11:04 GMT oabramkina [1424] * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_output.cpp (modified) Bugfix: avoiding unnecessary cast of default values to float or short ... Thu, 08 Feb 2018 15:51:10 GMT oabramkina [1423] * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_output.cpp.BIS (deleted) Deleting an extra file of the previous commit. Thu, 08 Feb 2018 15:47:02 GMT oabramkina [1422] * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_output.cpp.BIS (copied) * XIOS/dev/XIOS_DEV_CMIP6/src/node/grid.hpp (modified) Correcting a typo in r1421. Thu, 08 Feb 2018 14:40:25 GMT oabramkina [1421] * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_output.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/axis.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/grid.hpp (modified) Bugfix in case of a hole defined on an axis. Thu, 08 Feb 2018 13:40:41 GMT ymipsl [1420] * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/generic_algorithm_transformation.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/generic_algorithm_transformation.hpp (modified) bug fix when using 3dmask on NonDistributed transformation. YM Fri, 02 Feb 2018 15:26:29 GMT oabramkina [1419] * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_input.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/domain.cpp (modified) Reading of curvilinear and unstructured domains locally by clients is ... Thu, 01 Feb 2018 18:18:25 GMT ymipsl [1418] * XIOS/dev/XIOS_DEV_CMIP6/src/node/context.cpp (modified) Fix for workflow reentrance : missing check at context finalize. YM Thu, 01 Feb 2018 17:37:08 GMT oabramkina [1417] * XIOS/dev/XIOS_DEV_CMIP6/src/node/field.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/field.hpp (modified) Including calculations of grid distributions for fields which are ... Thu, 01 Feb 2018 08:41:34 GMT ymipsl [1416] * XIOS/dev/XIOS_DEV_CMIP6/src/node/axis.cpp (modified) Bug fix when writing axis coordinate in some specific cases. YM Wed, 31 Jan 2018 13:23:58 GMT ymipsl [1415] * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_output.cpp (modified) 2 fixs : - for curvilinear grids, associated coordinates are wrong if ... Fri, 26 Jan 2018 08:01:51 GMT ymipsl [1414] * XIOS/dev/XIOS_DEV_CMIP6/src/filter/spatial_transform_filter.cpp (modified) More timer instrumentation... YM Thu, 25 Jan 2018 17:35:58 GMT oabramkina [1413] * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_input.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/domain.cpp (modified) Reverting changes made in r1310 for local domain read of curvilinear and ... Thu, 25 Jan 2018 13:58:58 GMT ymipsl [1412] * XIOS/dev/XIOS_DEV_CMIP6/src/filter/spatial_transform_filter.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/axis_algorithm_interpolate.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/grid_transformation.cpp (modified) More timer instrumentation... YM Thu, 25 Jan 2018 13:04:37 GMT ymipsl [1411] * XIOS/dev/XIOS_DEV_CMIP6/src/node/axis.cpp (modified) Bug fix on server side when receiving a distributed axis with zoom ... Wed, 24 Jan 2018 17:45:14 GMT oabramkina [1410] * XIOS/dev/XIOS_DEV_CMIP6/src/config/domain_attribute_private.conf (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_input.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/domain.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/domain_algorithm_generate_rectilinear.hpp (modified) Improving protocol for reading : grid attributes such longitude, ... Wed, 24 Jan 2018 10:58:22 GMT ymipsl [1409] * XIOS/dev/XIOS_DEV_CMIP6/src/node/axis.cpp (modified) Bug fix in evalution of size of written data for axis, which is useful ... Tue, 23 Jan 2018 16:20:49 GMT ymipsl [1408] * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/generic_algorithm_transformation.cpp (modified) NonDistributedTransformation : Another typo fix. => could raise some ... Tue, 23 Jan 2018 14:15:36 GMT ymipsl [1407] * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/generic_algorithm_transformation.cpp (modified) NonDistributedTransformation : typo fix. => could raise some error ... Mon, 22 Jan 2018 16:42:26 GMT ymipsl [1406] * XIOS/dev/XIOS_DEV_CMIP6/src/filter/temporal_filter.cpp (modified) Fix a problem in computing initial sampling date in temporal filter, ... Mon, 22 Jan 2018 16:40:41 GMT ymipsl [1405] * XIOS/dev/XIOS_DEV_CMIP6/src/node/field.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/field.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/file.cpp (modified) Bug fix when using instant filter on a field defined outside a file. YM Tue, 16 Jan 2018 22:54:35 GMT ymipsl [1404] * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/generic_algorithm_transformation.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/generic_algorithm_transformation.hpp (modified) Bug fix in non distributed transformation : mask is now correctly taking ... Tue, 16 Jan 2018 22:53:00 GMT ymipsl [1403] * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/axis_algorithm_transformation.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/domain_algorithm_transformation.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/scalar_algorithm_transformation.cpp (modified) Fix bug in transformation when using mask and overlapped grid element ... Fri, 12 Jan 2018 09:12:25 GMT ymipsl [1402] * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/generic_algorithm_transformation.cpp (modified) Fix problem for spatial transformation for distributed element when ... Fri, 12 Jan 2018 09:10:22 GMT ymipsl [1401] * XIOS/dev/XIOS_DEV_CMIP6/src/node/grid.hpp (modified) Missing file from previous commit YM Thu, 11 Jan 2018 16:15:58 GMT ymipsl [1400] * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/generic_algorithm_transformation.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/generic_algorithm_transformation.hpp (modified) 2 bug fix for spatial transformation - Dynamic spatial transformation ... Wed, 10 Jan 2018 15:17:57 GMT ymipsl [1399] * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/generic_algorithm_transformation.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/generic_algorithm_transformation.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/grid_transformation.cpp (modified) 2 update for spatial tranformations : - One bug fix introduce in r1389 ... Wed, 10 Jan 2018 15:16:44 GMT yushan [1398] * XIOS/dev/branch_openmp/extern/ep_dev/ep_accumulate.cpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/ep_get.cpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/ep_lib_win.hpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/ep_put.cpp (modified) dev EP-RMA : MPI_Rput MPI_Rget MPI_Raccumulate MPI_Rget_accumulate (to ... Wed, 10 Jan 2018 15:07:16 GMT ymipsl [1397] * XIOS/dev/XIOS_DEV_CMIP6/src/node/grid.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/grid.hpp (modified) Add a method to retrive the local mask of a grid YM Wed, 10 Jan 2018 15:05:15 GMT ymipsl [1396] * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/scalar_algorithm_reduce_domain.cpp (modified) reduce domain to scalar transformation : attribute "local" was not set ... Wed, 10 Jan 2018 14:33:27 GMT yushan [1395] * XIOS/dev/branch_openmp/extern/ep_dev/ep_compare.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_lib_win.hpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/main.cpp (modified) dev EP-RMA : MPI_Compare_and_swap Wed, 10 Jan 2018 14:24:00 GMT yushan [1394] * XIOS/dev/branch_openmp/extern/ep_dev/ep_fetch.cpp (added) dev EP-RMA : MPI_Tetch_and_op Wed, 10 Jan 2018 14:23:37 GMT yushan [1393] * XIOS/dev/branch_openmp/extern/ep_dev/ep_lib_win.hpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/main.cpp (modified) dev EP-RMA : MPI_Tetch_and_op Wed, 10 Jan 2018 10:55:33 GMT oabramkina [1392] * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_output.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/io/onetcdf4_decl.cpp (modified) Correcting a bug in case if default_value is given as short int. Wed, 10 Jan 2018 10:37:16 GMT ymipsl [1391] * XIOS/dev/XIOS_DEV_CMIP6/src/config/domain_attribute.conf (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_output.cpp (modified) Add lon_name and lat_name domain attribute to set a specific name to the ... Mon, 08 Jan 2018 15:46:46 GMT oabramkina [1390] * XIOS/dev/XIOS_DEV_CMIP6/src/io/nc4_data_output.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/domain.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/grid.hpp (modified) Taking into account a possibility of having a hole on the client side ... Fri, 22 Dec 2017 13:57:35 GMT ymipsl [1389] * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/generic_algorithm_transformation.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/transformation/generic_algorithm_transformation.hpp (modified) Fix regression on vertical interpolation with pressure level. YM Thu, 21 Dec 2017 13:50:18 GMT yushan [1388] * XIOS/dev/branch_openmp/extern/ep_dev/ep_allocate.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_lib.cpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/ep_lib.hpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/ep_lib_win.hpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/ep_memory.cpp (deleted) * XIOS/dev/branch_openmp/extern/ep_dev/ep_mpi.hpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/ep_type.hpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/ep_win.cpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/main.cpp (modified) dev EP-RMA : MPI_Win_allocate Wed, 20 Dec 2017 13:20:08 GMT oabramkina [1387] * XIOS/dev/XIOS_DEV_CMIP6/src/node/field.cpp (modified) * XIOS/trunk/src/node/field.cpp (modified) Fixing a bug in case of output_freq defined in months to avoid adding a ... Wed, 20 Dec 2017 12:16:02 GMT aclsce [1386] * XIOS/dev/XIOS_DEV_CMIP6/src/node/field.cpp (modified) - Back to deactivation of the self-transformation of grid Tue, 19 Dec 2017 16:50:40 GMT yushan [1385] * XIOS/dev/branch_openmp/extern/ep_dev/ep_accumulate.cpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/ep_declaration.cpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/ep_declaration.hpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/ep_lib_win.hpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/ep_type.cpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/ep_type.hpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/main.cpp (modified) dev EP-RMA : MPI_Get_accumulate Tue, 19 Dec 2017 16:29:21 GMT yushan [1384] * XIOS/dev/branch_openmp/extern/ep_dev/ep_accumulate.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_get.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_lib_win.hpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/ep_put.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/main.cpp (modified) dev EP-RMA : MPI_Accumulate Tue, 19 Dec 2017 16:16:01 GMT yushan [1383] * XIOS/dev/branch_openmp/extern/ep_dev/ep_lib.cpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/ep_lib_win.hpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/ep_mpi.hpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/ep_win.cpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/main.cpp (modified) dev EP-RMA : MPI_Put, MPI_Get Tue, 19 Dec 2017 13:44:41 GMT yushan [1382] * XIOS/dev/branch_openmp/extern/ep_dev/main.cpp (modified) * XIOS/dev/branch_openmp/extern/ep_dev/makefile (modified) dev EP_RMA Tue, 19 Dec 2017 13:22:03 GMT yushan [1381] * XIOS/dev/branch_openmp/extern/ep_dev (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_allgather.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_allgatherv.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_allreduce.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_alltoall.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_barrier.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_bcast.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_create.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_declaration.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_declaration.hpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_dup.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_exscan.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_finalize.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_fortran.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_free.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_gather.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_gatherv.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_global.hpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_init.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_intercomm.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_intercomm_kernel.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_intercomm_world.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_lib.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_lib.hpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_lib_collective.hpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_lib_fortran.hpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_lib_intercomm.hpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_lib_local.hpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_lib_tests.hpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_lib_win.hpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_memory.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_merge.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_message.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_mpi.hpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_probe.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_rank.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_recv.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_reduce.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_reduce_scatter.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_scan.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_scatter.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_scatterv.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_send.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_size.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_split.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_tag.hpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_test.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_type.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_type.hpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_wait.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/ep_win.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/main.cpp (added) * XIOS/dev/branch_openmp/extern/ep_dev/makefile (added) add folder for MPI EP-RMA development. Current: MPI_Win, MPI_win_create, ... Thu, 14 Dec 2017 13:58:40 GMT ymipsl [1380] * XIOS/dev/XIOS_DEV_CMIP6/src/node/context.cpp (modified) Fix for previous commit (r1378) : forgotten argument for one eventLoop ... Thu, 14 Dec 2017 12:56:45 GMT yushan [1379] * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_free.cpp (modified) fix small bug Wed, 13 Dec 2017 15:11:58 GMT ymipsl [1378] * XIOS/dev/XIOS_DEV_CMIP6/src/context_client.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/context.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/context.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/server.hpp (modified) Attemping to solve a dead-lock rising at finalize : Server 1 must be ... Wed, 13 Dec 2017 15:06:32 GMT ymipsl [1377] * XIOS/dev/XIOS_DEV_CMIP6/src/context_client.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/cxios.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/cxios.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/event_client.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/event_client.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/server.cpp (modified) - Add more debugging information at info_level 100 - Enforce ... Wed, 13 Dec 2017 14:49:59 GMT ymipsl [1376] * XIOS/dev/XIOS_DEV_CMIP6/src/cxios.cpp (modified) Set the default timeout in reception at 300s instead 10s YM Wed, 13 Dec 2017 14:45:34 GMT ymipsl [1375] * XIOS/dev/XIOS_DEV_CMIP6/src/cxios.cpp (modified) Set the default timeout in reception at 300s instead 10s YM Wed, 13 Dec 2017 14:12:08 GMT yushan [1374] * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_message.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_recv.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_test.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_type.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_type.hpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_wait.cpp (modified) * XIOS/dev/branch_openmp/src/client.cpp (modified) unify type : MPI_Request Wed, 13 Dec 2017 13:42:26 GMT yushan [1373] * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_declaration.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_recv.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_send.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_test.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_type.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_type.hpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_wait.cpp (modified) * XIOS/dev/branch_openmp/src/client_client_dht_template_impl.hpp (modified) unify type : MPI_Request Tue, 12 Dec 2017 15:53:21 GMT oabramkina [1372] * XIOS/dev/XIOS_DEV_CMIP6/src/node/context.cpp (modified) Improving buffer evaluation in the (rare) case of a context with no ... Tue, 12 Dec 2017 13:09:06 GMT oabramkina [1371] * XIOS/dev/XIOS_DEV_CMIP6/src/node/axis.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/axis.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/grid.cpp (modified) Fixing a bug in buffer evaluation: previously axis attributes were not ... Tue, 12 Dec 2017 13:01:50 GMT oabramkina [1370] * XIOS/dev/XIOS_DEV_CMIP6/src/io/netCdfInterface.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/context.cpp (modified) Fixing a bug in buffer evaluation: including evaluation of file ... Fri, 08 Dec 2017 13:16:16 GMT yushan [1369] * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_declaration.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_declaration.hpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_fortran.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_lib_fortran.hpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_type.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_type.hpp (modified) * XIOS/dev/branch_openmp/src/interface/c/icdata.cpp (modified) unify type : MPI_Fint Fri, 08 Dec 2017 10:48:59 GMT yushan [1368] * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_declaration.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_intercomm_kernel.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_lib.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_lib.hpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_lib_collective.hpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_lib_intercomm.hpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_lib_local.hpp (modified) unify type : MPI_Op Thu, 07 Dec 2017 22:01:07 GMT ymipsl [1367] * XIOS/dev/XIOS_DEV_CMIP6/src/xml_node.cpp (modified) Bug fix for rev1363 YM Thu, 07 Dec 2017 16:11:26 GMT yushan [1366] * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_type.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_type.hpp (modified) unify type : MPI_Datatype MPI_Aint Thu, 07 Dec 2017 15:56:23 GMT yushan [1365] * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_declaration.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_gather.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_gatherv.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_intercomm_kernel.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_lib.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_lib.hpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_lib_collective.hpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_lib_intercomm.hpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_lib_local.hpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_memory.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_reduce.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_reduce_scatter.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_scatter.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_scatterv.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_type.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_type.hpp (modified) * XIOS/dev/branch_openmp/src/client_server_mapping.cpp (modified) * XIOS/dev/branch_openmp/src/event_scheduler.cpp (modified) * XIOS/dev/branch_openmp/src/interface/c/oasis_cinterface.cpp (modified) unify type : MPI_Datatype MPI_Aint Thu, 07 Dec 2017 14:20:13 GMT oabramkina [1364] * XIOS/dev/XIOS_DEV_CMIP6/src/node/domain.cpp (modified) Fixing a bug in case of a varying number of processes per pool and ... Wed, 06 Dec 2017 17:36:26 GMT ymipsl [1363] * XIOS/dev/XIOS_DEV_CMIP6/src/node/field.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/xml_node.cpp (modified) Fix : when arithmetic field expression is defined, other xml node are ... Wed, 06 Dec 2017 14:22:17 GMT yushan [1362] * XIOS/dev/branch_openmp/extern/remap/src/mpi_routing.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_declaration.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_lib.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_memory.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_message.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_mpi.hpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_probe.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_recv.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_type.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_type.hpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_wait.cpp (modified) * XIOS/dev/branch_openmp/src/io/inetcdf4.cpp (modified) * XIOS/dev/branch_openmp/src/io/netCdfInterface.cpp (modified) * XIOS/dev/branch_openmp/src/io/onetcdf4.cpp (modified) unify type : MPI_Message MPI_Info Wed, 06 Dec 2017 13:05:12 GMT ymipsl [1361] * XIOS/dev/XIOS_DEV_CMIP6/src/declare_ref_func.hpp (modified) Fix : when making a reference to an object and when attribut "name" is ... Wed, 06 Dec 2017 08:49:39 GMT yushan [1360] * XIOS/dev/branch_openmp/src/buffer_client.cpp (modified) * XIOS/dev/branch_openmp/src/test/toy_cmip6_omp.f90 (modified) toy_cmip6_omp tested on Curie (14*4+2) and Ada (14*2+2) Wed, 06 Dec 2017 08:06:56 GMT yushan [1359] * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_type.cpp (added) unify MPI_Comm type, add missing file Wed, 06 Dec 2017 07:34:41 GMT rlacroix [1358] * XIOS/dev/XIOS_DEV_CMIP6/src/filter/file_server_writer_filter.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/filter/file_server_writer_filter.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/filter/file_writer_filter.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/filter/file_writer_filter.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/filter/filter.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/filter/filter.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/filter/input_pin.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/filter/output_pin.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/filter/output_pin.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/filter/store_filter.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/filter/store_filter.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/filter/temporal_filter.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/filter/temporal_filter.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/context.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/context.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/field.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/field.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/file.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/file.hpp (modified) * XIOS/trunk/src/filter/file_writer_filter.cpp (modified) * XIOS/trunk/src/filter/file_writer_filter.hpp (modified) * XIOS/trunk/src/filter/filter.cpp (modified) * XIOS/trunk/src/filter/filter.hpp (modified) * XIOS/trunk/src/filter/input_pin.hpp (modified) * XIOS/trunk/src/filter/output_pin.cpp (modified) * XIOS/trunk/src/filter/output_pin.hpp (modified) * XIOS/trunk/src/filter/store_filter.cpp (modified) * XIOS/trunk/src/filter/store_filter.hpp (modified) * XIOS/trunk/src/filter/temporal_filter.cpp (modified) * XIOS/trunk/src/filter/temporal_filter.hpp (modified) * XIOS/trunk/src/node/context.cpp (modified) * XIOS/trunk/src/node/context.hpp (modified) * XIOS/trunk/src/node/field.cpp (modified) * XIOS/trunk/src/node/field.hpp (modified) * XIOS/trunk/src/node/file.cpp (modified) * XIOS/trunk/src/node/file.hpp (modified) Support reentrant workflows and workflows with temporal integration for ... Wed, 06 Dec 2017 07:34:31 GMT rlacroix [1357] * XIOS/dev/XIOS_DEV_CMIP6/src/calendar.cpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/calendar.hpp (modified) * XIOS/dev/XIOS_DEV_CMIP6/src/node/context.cpp (modified) * XIOS/trunk/src/calendar.cpp (modified) * XIOS/trunk/src/calendar.hpp (modified) * XIOS/trunk/src/node/context.cpp (modified) Add some extra checks when switching to the next timestep. Tue, 05 Dec 2017 16:40:02 GMT yushan [1356] * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_create.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_free.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_intercomm_world.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_lib.cpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_lib.hpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_lib_intercomm.hpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_mpi.hpp (modified) * XIOS/dev/branch_openmp/extern/src_ep_dev/ep_type.hpp (modified) * XIOS/dev/branch_openmp/src/context_client.cpp (modified) * XIOS/dev/branch_openmp/src/io/inetcdf4.cpp (modified) * XIOS/dev/branch_openmp/src/io/onetcdf4.cpp (modified) unify MPI_Comm type