1 | #!/bin/ksh |
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2 | |
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3 | # Transforme une arborescence pour l'ancien script du couplé |
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4 | # vers la nouvelle structure de libIGCM : |
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5 | |
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6 | # usage : |
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7 | # script_transformation /u/rech/ces/rces333 SORTIES_CPL_IPSL LA1B450 /u/rech/ces/rces533 IPSLCM4_v2 LA1B450 [ ln | cp | ] |
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8 | |
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9 | INDMNFS=$1 |
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10 | REP1=$2 |
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11 | JobNameIn=$3 |
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12 | OUTDMNFS=$4 |
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13 | TagName=$5 |
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14 | JobNameOut=$6 |
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15 | # Optional argument : Action of transformation ( ln || cp || mv). |
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16 | # Nothing mean "do nothing". |
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17 | Action=$7 |
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18 | |
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19 | echo "Script de Transformation Ancienne/Nouvelle arborescence." |
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20 | echo "Appel : script_transformation ${INDMNFS} ${REP1} ${JobNameIn} ${OUTDMNFS} ${TagName} ${JobNameOut} ${Action}" |
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21 | |
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22 | IGCM_OUT=IGCM_OUT |
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23 | |
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24 | verbose=false |
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25 | |
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26 | #transform=$Action |
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27 | function transform |
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28 | { |
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29 | FILE1=$1 |
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30 | FILE2=$2 |
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31 | if ( ${verbose} ) ; then |
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32 | echo "transform " ${FILE1} ${FILE2} |
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33 | fi |
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34 | case ${Action} in |
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35 | ln) |
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36 | ln -s $1 $2 ;; |
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37 | cp) |
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38 | cp $1 $2 ;; |
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39 | *) |
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40 | if ( ${verbose} ) ; then |
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41 | echo "do nothing" |
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42 | fi |
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43 | esac |
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44 | } |
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45 | |
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46 | function MkDir |
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47 | { |
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48 | DIR=$1 |
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49 | if ( ${verbose} ) ; then |
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50 | echo "Make dir " ${DIR} |
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51 | fi |
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52 | |
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53 | case ${Action} in |
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54 | ln) |
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55 | mkdir -p ${DIR} ;; |
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56 | cp) |
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57 | mkdir -p ${DIR} ;; |
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58 | *) |
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59 | esac |
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60 | } |
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61 | |
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62 | MkDir ${OUTDMNFS}/${IGCM_OUT}/${TagName}/${JobNameOut} |
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63 | |
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64 | |
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65 | set +A Liste_OLD_comp -- Atm Cpl Lim Oce Srf Trc |
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66 | set +A Liste_NEW_comp -- ATM CPL ICE OCE SRF TRC |
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67 | |
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68 | set +A Liste_Analyses -- MO2SN MO2YE MO4YE SE TS TS_C4MIP |
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69 | #(DA2YE) ? |
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70 | #TS : |
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71 | # TS_HF => recherche .*hf.nc |
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72 | # TS_MO => recherche Job_1m_.*.nc |
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73 | # TS_DA => recherche Job_1d_.*.nc |
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74 | set +A Liste_Outputs -- DA HF MO |
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75 | |
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76 | NbComp=${#Liste_NEW_comp[*]} |
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77 | icomp=0 |
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78 | while [ icomp -lt ${NbComp} ] ; do |
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79 | compo=${Liste_OLD_comp[icomp]} |
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80 | comp=${Liste_NEW_comp[icomp]} |
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81 | |
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82 | if ( ${verbose} ) ; then |
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83 | echo 'Transform ' ${compo} ' in ' ${comp} |
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84 | fi |
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85 | OLDCOMP=${INDMNFS}/${REP1}/${JobNameIn}/${compo} |
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86 | NEWCOMP=${OUTDMNFS}/${IGCM_OUT}/${TagName}/${JobNameOut}/${comp} |
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87 | if ( ${verbose} ) ; then |
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88 | echo 'OLDREP ' ${OLDCOMP} |
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89 | fi |
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90 | if ( ${verbose} ) ; then |
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91 | echo ' in NEWREP ' ${NEWCOMP} |
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92 | fi |
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93 | MkDir ${NEWCOMP}/ |
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94 | MkDir ${NEWCOMP}/Analyse |
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95 | MkDir ${NEWCOMP}/Output |
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96 | MkDir ${NEWCOMP}/Restart |
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97 | |
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98 | for Output in ${Liste_Outputs[*]} ; do |
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99 | if [ -d ${OLDCOMP}/Output/${Output} ] ; then |
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100 | if ( ${verbose} ) ; then |
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101 | echo "Output exist : " ${Output} |
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102 | fi |
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103 | |
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104 | DIRIN=${OLDCOMP}/Output/${Output} |
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105 | DIROUT=${NEWCOMP}/Output/${Output} |
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106 | |
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107 | NbFiles=$( ls -1 ${DIRIN} | wc -l ) |
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108 | if ( ${verbose} ) ; then |
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109 | echo "NbFiles = " ${NbFiles} |
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110 | fi |
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111 | |
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112 | # set -A LISTE -- $( find "${DIRIN}" -type f -exec basename '{}' \; ) |
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113 | # if ( ${verbose} ) ; then |
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114 | # echo "NbFilesListe = " ${#LISTE[*]} |
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115 | # fi |
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116 | |
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117 | # if [ ${NbFiles} -ne ${#LISTE[*]} ] ; then |
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118 | # echo "Number of file in LISTE not equal to real directory." |
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119 | # fi |
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120 | |
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121 | MkDir ${DIROUT} |
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122 | case ${Output} in |
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123 | DA) |
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124 | # for file in ${LISTE[*]} ; do |
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125 | for file in $( find "${DIRIN}" -type f -exec basename '{}' \; ) ; do |
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126 | file_o=$( echo ${file} | sed -e \ |
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127 | "s/${JobNameIn}_1d_\([0-9]*\)_\([0-9]*\)_\(.*.nc\)/${JobNameOut}_\1_\2_1D_\3/" ) |
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128 | if ( ${verbose} ) ; then |
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129 | echo "file in " ${file} " file out " ${file_o} |
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130 | fi |
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131 | |
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132 | transform ${DIRIN}/${file} ${DIROUT}/${file_o} |
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133 | # ${transform} ${DIRIN}/${file} ${DIROUT}/${file_o} |
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134 | done |
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135 | ;; |
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136 | HF) |
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137 | # for file in ${LISTE[*]} ; do |
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138 | for file in $( find "${DIRIN}" -type f -exec basename '{}' \; ) ; do |
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139 | file_o=$( echo ${file} | sed -e \ |
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140 | "s/${JobNameIn}_1[md]_\([0-9]*\)_\([0-9]*\)_\(.*.nc\)/${JobNameOut}_\1_\2_HF_\3/" ) |
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141 | if ( ${verbose} ) ; then |
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142 | echo "file in " ${file} " file out " ${file_o} |
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143 | fi |
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144 | |
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145 | transform ${DIRIN}/${file} ${DIROUT}/${file_o} |
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146 | # ${transform} ${DIRIN}/${file} ${DIROUT}/${file_o} |
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147 | done |
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148 | ;; |
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149 | MO) |
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150 | # for file in ${LISTE[*]} ; do |
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151 | for file in $( find "${DIRIN}" -type f -exec basename '{}' \; ) ; do |
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152 | file_o=$( echo ${file} | sed -e \ |
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153 | "s/${JobNameIn}_1m_\([0-9]*\)_\([0-9]*\)_\(.*.nc\)/${JobNameOut}_\1_\2_1M_\3/" ) |
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154 | if ( ${verbose} ) ; then |
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155 | echo "file in " ${file} " file out " ${file_o} |
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156 | fi |
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157 | |
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158 | transform ${DIRIN}/${file} ${DIROUT}/${file_o} |
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159 | # ${transform} ${DIRIN}/${file} ${DIROUT}/${file_o} |
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160 | done |
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161 | ;; |
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162 | esac |
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163 | fi |
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164 | done |
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165 | |
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166 | |
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167 | for Analyse in ${Liste_Analyses[*]} ; do |
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168 | if [ -d ${OLDCOMP}/Analyse/${Analyse} ] ; then |
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169 | if ( ${verbose} ) ; then |
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170 | echo "Analyse exist : " ${Analyse} |
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171 | fi |
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172 | |
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173 | DIRIN=${OLDCOMP}/Analyse/${Analyse} |
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174 | DIROUT=${NEWCOMP}/Analyse/${Analyse} |
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175 | |
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176 | NbFiles=$( ls -1 ${DIRIN} | wc -l ) |
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177 | if ( ${verbose} ) ; then |
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178 | echo "NbFiles = " ${NbFiles} |
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179 | fi |
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180 | |
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181 | # set -A LISTE -- $( find "${DIRIN}" -type f -exec basename '{}' \; ) |
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182 | # if ( ${verbose} ) ; then |
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183 | # echo "NbFilesListe = " ${#LISTE[*]} |
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184 | # fi |
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185 | |
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186 | # if [ ${NbFiles} -ne ${#LISTE[*]} ] ; then |
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187 | # echo "Number of file in LISTE not equal to real directory." |
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188 | # fi |
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189 | |
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190 | case ${Analyse} in |
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191 | MO2SN) |
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192 | MkDir ${DIROUT} |
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193 | # for file in ${LISTE[*]} ; do |
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194 | for file in $( find "${DIRIN}" -type f -exec basename '{}' \; ) ; do |
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195 | file_o=$( echo ${file} | sed -e \ |
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196 | "s/${JobNameIn}_\([A-Z]*\)_\([0-9]*\)_\([0-9]*\)_\(.*.nc\)/${JobNameOut}_\2_\3_\1_\4/" ) |
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197 | if ( ${verbose} ) ; then |
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198 | echo "file in " ${file} " file out " ${file_o} |
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199 | fi |
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200 | |
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201 | transform ${DIRIN}/${file} ${DIROUT}/${file_o} |
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202 | # ${transform} ${DIRIN}/${file} ${DIROUT}/${file_o} |
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203 | done |
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204 | ;; |
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205 | MO2YE) |
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206 | MkDir ${DIROUT} |
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207 | # for file in ${LISTE[*]} ; do |
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208 | for file in $( find "${DIRIN}" -type f -exec basename '{}' \; ) ; do |
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209 | file_o=$( echo ${file} | sed -e \ |
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210 | "s/${JobNameIn}_m2y_1y_\([0-9]*\)_\([0-9]*\)_\(.*.nc\)/${JobNameOut}_\1_\2_MO1Y_\3/" ) |
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211 | if ( ${verbose} ) ; then |
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212 | echo "file in " ${file} " file out " ${file_o} |
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213 | fi |
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214 | |
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215 | transform ${DIRIN}/${file} ${DIROUT}/${file_o} |
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216 | # ${transform} ${DIRIN}/${file} ${DIROUT}/${file_o} |
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217 | done |
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218 | ;; |
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219 | MO4YE) |
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220 | MkDir ${DIROUT} |
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221 | # for file in ${LISTE[*]} ; do |
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222 | for file in $( find "${DIRIN}" -type f -exec basename '{}' \; ) ; do |
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223 | file_o=$( echo ${file} | sed -e \ |
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224 | "s/${JobNameIn}_m4y_1y_\([0-9]*\)_\([0-9]*\)_\(.*.nc\)/${JobNameOut}_\1_\2_1Y_\3/" ) |
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225 | if ( ${verbose} ) ; then |
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226 | echo "file in " ${file} " file out " ${file_o} |
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227 | fi |
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228 | |
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229 | transform ${DIRIN}/${file} ${DIROUT}/${file_o} |
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230 | # ${transform} ${DIRIN}/${file} ${DIROUT}/${file_o} |
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231 | done |
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232 | ;; |
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233 | SE) |
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234 | MkDir ${DIROUT} |
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235 | # for file in ${LISTE[*]} ; do |
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236 | for file in $( find "${DIRIN}" -type f -exec basename '{}' \; ) ; do |
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237 | file_o=$( echo ${file} | sed -e \ |
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238 | "s/${JobNameIn}_SE_\([0-9]*\)_\([0-9]*\)_\(.*.nc\)/${JobNameOut}_SE_\1_\2_1M_\3/" ) |
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239 | if ( ${verbose} ) ; then |
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240 | echo "file in " ${file} " file out " ${file_o} |
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241 | fi |
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242 | |
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243 | transform ${DIRIN}/${file} ${DIROUT}/${file_o} |
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244 | # ${transform} ${DIRIN}/${file} ${DIROUT}/${file_o} |
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245 | done |
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246 | ;; |
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247 | TS) |
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248 | # for file in ${LISTE[*]} ; do |
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249 | for file in $( find "${DIRIN}" -type f -exec basename '{}' \; ) ; do |
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250 | if [ X$( echo ${file} | grep "${JobNameIn}_1m_\([0-9]*\)_\([0-9]*\)_\(.*\)hf\.nc" ) != X ] ; then |
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251 | MkDir ${NEWCOMP}/Analyse/TS_HF |
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252 | |
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253 | file_o=$( echo ${file} | sed -e \ |
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254 | "s/${JobNameIn}_1m_\([0-9]*\)_\([0-9]*\)_\(.*\)hf\.nc/${JobNameOut}_\1_\2_HF_\3.nc/" ) |
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255 | |
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256 | transform ${DIRIN}/${file} ${NEWCOMP}/Analyse/TS_HF/${file_o} |
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257 | # ${transform} ${DIRIN}/${file} ${NEWCOMP}/Analyse/TS_HF/${file_o} |
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258 | elif [ X$( echo ${file} | grep "${JobNameIn}_1m_\([0-9]*\)_\([0-9]*\)_\(.*.nc\)" ) != X ] ; then |
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259 | MkDir ${NEWCOMP}/Analyse/TS_MO |
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260 | |
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261 | file_o=$( echo ${file} | sed -e \ |
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262 | "s/${JobNameIn}_1m_\([0-9]*\)_\([0-9]*\)_\(.*.nc\)/${JobNameOut}_\1_\2_1M_\3/" ) |
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263 | |
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264 | transform ${DIRIN}/${file} ${NEWCOMP}/Analyse/TS_MO/${file_o} |
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265 | # ${transform} ${DIRIN}/${file} ${NEWCOMP}/Analyse/TS_MO/${file_o} |
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266 | elif [ X$( echo ${file} | grep "${JobNameIn}_1d_\([0-9]*\)_\([0-9]*\)_\(.*.nc\)" ) != X ] ; then |
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267 | MkDir ${NEWCOMP}/Analyse/TS_DA |
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268 | |
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269 | file_o=$( echo ${file} | sed -e \ |
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270 | "s/${JobNameIn}_1d_\([0-9]*\)_\([0-9]*\)_\(.*.nc\)/${JobNameOut}_\1_\2_1D_\3/" ) |
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271 | |
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272 | transform ${DIRIN}/${file} ${NEWCOMP}/Analyse/TS_DA/${file_o} |
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273 | # ${transform} ${DIRIN}/${file} ${NEWCOMP}/Analyse/TS_DA/${file_o} |
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274 | fi |
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275 | if ( ${verbose} ) ; then |
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276 | echo "file in " ${file} " file out " ${file_o} |
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277 | fi |
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278 | |
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279 | done |
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280 | ;; |
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281 | TS_C4MIP) |
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282 | MkDir ${NEWCOMP}/Analyse/TS_MO |
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283 | # for file in ${LISTE[*]} ; do |
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284 | for file in $( find "${DIRIN}" -type f -exec basename '{}' \; ) ; do |
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285 | file_o=$( echo ${file} | sed -e \ |
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286 | "s/${JobNameIn}_m2y_1m_\([0-9]*\)_\([0-9]*\)_\(.*.nc\)/${JobNameOut}_\1_\2_M2Y_\3/" ) |
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287 | if ( ${verbose} ) ; then |
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288 | echo "file in " ${file} " file out " ${file_o} |
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289 | fi |
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290 | |
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291 | transform ${DIRIN}/${file} ${DRIOUT}/${file_o} |
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292 | # ${transform} ${DIRIN}/${file} ${DRIOUT}/${file_o} |
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293 | done |
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294 | ;; |
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295 | *) |
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296 | ;; |
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297 | esac |
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298 | fi |
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299 | done |
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300 | |
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301 | if ( ${verbose} ) ; then |
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302 | echo "Restarts" |
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303 | fi |
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304 | |
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305 | DIRIN=${OLDCOMP}/Restart |
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306 | DIROUT=${NEWCOMP}/Restart |
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307 | |
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308 | NbFiles=$( ls -1 ${DIRIN} | wc -l ) |
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309 | if ( ${verbose} ) ; then |
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310 | echo "NbFiles = " ${NbFiles} |
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311 | fi |
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312 | |
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313 | # set -A LISTE -- $( find "${DIRIN}" -type f -exec basename '{}' \; ) |
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314 | # if ( ${verbose} ) ; then |
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315 | # echo "NbFilesListe = " ${#LISTE[*]} |
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316 | # fi |
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317 | |
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318 | # if [ ${NbFiles} -ne ${#LISTE[*]} ] ; then |
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319 | # echo "Number of file in LISTE not equal to real directory." |
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320 | # fi |
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321 | |
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322 | case ${comp} in |
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323 | CPL) |
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324 | # for file in ${LISTE[*]} ; do |
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325 | for file in $( find "${DIRIN}" -type f -exec basename '{}' \; ) ; do |
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326 | if [ X$( echo ${file} | grep "${JobNameIn}_flxatmos.*_\([0-9]*\).nc" ) != X ] ; then |
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327 | #OASIS V3 |
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328 | file_o=$( echo ${file} | sed -e \ |
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329 | "s/${JobNameIn}_flxatmos\(.*\)_\([0-9]*\).nc/${JobNameOut}_\2_flxat\1.nc/" ) |
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330 | elif [ X$( echo ${file} | grep "${JobNameIn}_flxatmos.*_\([0-9]*\)" ) != X ] ; then |
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331 | #OASIS V2 |
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332 | file_o=$( echo ${file} | sed -e \ |
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333 | "s/${JobNameIn}_flxatmos\(.*\)_\([0-9]*\)/${JobNameOut}_\2_flxat\1.nc/" ) |
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334 | elif [ X$( echo ${file} | grep "${JobNameIn}_sstocean.*_\([0-9]*\).nc" ) != X ] ; then |
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335 | #OASIS V3 |
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336 | file_o=$( echo ${file} | sed -e \ |
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337 | "s/${JobNameIn}_sstocean\(.*\)_\([0-9]*\).nc/${JobNameOut}_\2_sstoc\1.nc/" ) |
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338 | elif [ X$( echo ${file} | grep "${JobNameIn}_sstocean.*_\([0-9]*\)" ) != X ] ; then |
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339 | #OASIS V2 |
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340 | file_o=$( echo ${file} | sed -e \ |
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341 | "s/${JobNameIn}_sstocean\(.*\)_\([0-9]*\)/${JobNameOut}_\2_sstoc\1.nc/" ) |
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342 | fi |
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343 | if ( ${verbose} ) ; then |
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344 | echo "file in " ${file} " file out " ${file_o} |
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345 | fi |
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346 | |
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347 | transform ${DIRIN}/${file} ${DIROUT}/${file_o} |
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348 | # ${transform} ${DIRIN}/${file} ${DIROUT}/${file_o} |
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349 | done |
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350 | ;; |
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351 | SRF) |
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352 | # for file in ${LISTE[*]} ; do |
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353 | for file in $( find "${DIRIN}" -type f -exec basename '{}' \; ) ; do |
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354 | file_o=${file} |
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355 | if [ X$( echo ${file} | grep "${JobNameIn}_\([0-9]*\)_stomate_restart.nc" ) != X ] ; then |
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356 | file_o=$( echo ${file} | sed -e \ |
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357 | "s/${JobNameIn}_\([0-9]*\)_stomate_restart.nc/${JobNameOut}_\1_stomate_rest.nc/" ) |
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358 | fi |
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359 | if ( ${verbose} ) ; then |
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360 | echo "file in " ${file} " file out " ${file_o} |
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361 | fi |
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362 | |
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363 | transform ${DIRIN}/${file} ${DIROUT}/${file_o} |
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364 | # ${transform} ${DIRIN}/${file} ${DIROUT}/${file_o} |
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365 | done |
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366 | ;; |
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367 | *) |
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368 | # for file in ${LISTE[*]} ; do |
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369 | for file in $( find "${DIRIN}" -type f -exec basename '{}' \; ) ; do |
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370 | file_o=$( echo ${file} | sed -e \ |
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371 | "s/${JobNameIn}_\([0-9]*\)_\(.*\).nc/${JobNameOut}_\2_\1.nc/" ) |
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372 | if ( ${verbose} ) ; then |
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373 | echo "file in " ${file} " file out " ${file_o} |
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374 | fi |
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375 | |
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376 | transform ${DIRIN}/${file} ${DIROUT}/${file_o} |
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377 | # ${transform} ${DIRIN}/${file} ${DIROUT}/${file_o} |
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378 | done |
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379 | ;; |
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380 | esac |
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381 | |
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382 | (( icomp = icomp + 1 )) |
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383 | done |
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