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AA_create_se

Last change on this file was 10, checked in by mmaipsl, 16 years ago
MM: All frequencies in post-treatement.
Property licence set to The following licence information concerns ONLY the libIGCM tools ================================================================== Copyright © Centre National de la Recherche Scientifique CNRS Commissariat à l'Énergie Atomique CEA libIGCM : Library for Portable Models Computation of IGCM Group. IGCM Group is the french IPSL Global Climate Model Group. This library is a set of shell scripts and functions whose purpose is the management of the initialization, the launch, the transfer of output files, the post-processing and the monitoring of datas produce by any numerical program on any plateforme. This software is governed by the CeCILL license under French law and abiding by the rules of distribution of free software. You can use, modify and/ or redistribute the software under the terms of the CeCILL license as circulated by CEA, CNRS and INRIA at the following URL "http://www.cecill.info". As a counterpart to the access to the source code and rights to copy, modify and redistribute granted by the license, users are provided only with a limited warranty and the software's author, the holder of the economic rights, and the successive licensors have only limited liability. In this respect, the user's attention is drawn to the risks associated with loading, using, modifying and/or developing or reproducing the software by the user in light of its specific status of free software, that may mean that it is complicated to manipulate, and that also therefore means that it is reserved for developers and experienced professionals having in-depth computer knowledge. Users are therefore encouraged to load and test the software's suitability as regards their requirements in conditions enabling the security of their systems and/or data to be ensured and, more generally, to use and operate it in the same conditions as regards security. The fact that you are presently reading this means that you have had knowledge of the CeCILL license and that you accept its terms. Property svn:keywords set to `Date Author Revision`
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1	#-Q- platine #!/usr/bin/ksh
2	#-Q- platine ###################
3	#-Q- platine ## PLATINE CEA ##
4	#-Q- platine ###################
5	#-Q- platine #BSUB -J SE # Nom du job
6	#-Q- platine #BSUB -N # message a la fin du job
7	#-Q- platine #BSUB -n 1 # reservation des processeurs pour le job
8	#-Q- platine #BSUB -W 1:00 # Limite temps
9	#-Q- sx8brodie #######################
10	#-Q- sx8brodie ## SX8BRODIE IDRIS ##
11	#-Q- sx8brodie #######################
12	#-Q- sx8brodie #QSUB -r SE # Nom du job
13	#-Q- sx8brodie #QSUB -lT 1:00:00 # limite en temps total
14	#-Q- sx8brodie #QSUB -lt 1:00:00 # limite en temps par process
15	#-Q- sx8brodie #QSUB -lM 1Gb
16	#-Q- sx8brodie #QSUB -eo # rassemble standard error et output
17	#-Q- sx8brodie #QSUB -J m
18	#-Q- sx8brodie #QSUB -l mpp_p=4
19	#-Q- sx8brodie #QSUB -s /bin/ksh # shell du job
20	#-Q- sx8mercure #!/bin/ksh
21	#-Q- sx8mercure ######################
22	#-Q- sx8mercure ## SX8MERCURE CEA ##
23	#-Q- sx8mercure ######################
24	#-Q- sx8mercure #PBS -N SE # Nom du job
25	#-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr
26	#-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission
27	#-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go
28	#-Q- sx8mercure #PBS -l cputim_job=1:00:00 # Limite temps a 1 heures
29	#-Q- sx8mercure #PBS -q scalaire
30	#-Q- default #!/bin/ksh
31	#-Q- default ##################
32	#-Q- default ## DEFAULT HOST ##
33	#-Q- default ##################
34
35	#set -vx
36
37	date
38
39	#-Q- sx8brodie export OMP_NUM_THREADS=1
40
41	# $Date$
42	# $Author$
43	# $Revision$
44	# IPSL (2006)
45	# This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
46
47	########################################################################
48
49	#D- Flag to determine if this job in a standalone mode
50	#D- Default : value from AA_job if any
51	StandAlone=${StandAlone:=true}
52
53	#D- Flag to determine atlas job's output directory
54	#D- Default : value from libIGCM_post.ksh if any
55	POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}}
56
57	#D- Increased verbosity (1, 2, 3)
58	#D- Default : value from AA_job if any
59	Verbosity=${Verbosity:=3}
60
61	#D- Low level debug : to bypass lib test checks and stack construction
62	#D- Default : value from AA_job if any
63	DEBUG_debug=${DEBUG_debug:=false}
64
65	#D- Low level debug : to bypass lib test checks and stack construction
66	#D- Default : value from AA_job if any
67	libIGCM=${libIGCM:=/home/rech/ces/rces452/libIGCM}
68
69	#D- TEMPORARY Flag to determine atmospheric resolution
70	#D- Default : value from atmospheric driver if any
71	RESOL_ATM=${RESOL_ATM:=LMD144142}
72
73	#D- TEMPORARY Flag to determine ocean resolution
74	#D- Default : value from ocean driver if any
75	RESOL_OCE=${RESOL_OCE:=ORCA2}
76
77	#D- TEMPORARY Flag to determine ice resolution
78	#D- Default : value from ice driver if any
79	RESOL_ICE=${RESOL_ICE:=ORCA2}
80
81	#D- Flag to determine surface resolution
82	#D- Default : value from surface driver if any
83	RESOL_SRF=${RESOL_SRF:=LMD144142}
84
85	########################################################################
86
87	. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh ;
88	. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh #; IGCM_debug_Check
89	. ${libIGCM}/libIGCM_card/libIGCM_card.ksh #; IGCM_card_Check
90	. ${libIGCM}/libIGCM_date/libIGCM_date.ksh #; IGCM_date_Check
91
92	########################################################################
93
94	#set -vx
95
96	if [ ${DEBUG_debug} = true ] ; then
97	IGCM_sys_MkdirWork ${RUN_DIR_PATH}
98	echo "RUN_DIR_PATH ${RUN_DIR_PATH} ok."
99	fi
100	IGCM_sys_Cd ${RUN_DIR_PATH}
101
102	if [ ${StandAlone} = true ] ; then
103	CARD_DIR=${SUBMIT_DIR}
104	else
105	CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} )
106	IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH}
107	fi
108
109	#
110	# First of all
111	#
112	IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card UserChoices
113	typeset option
114	for option in ${config_UserChoices[*]} ; do
115	IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
116	done
117	#
118	echo
119	IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices"
120	IGCM_debug_PrintVariables 3 config_UserChoices_JobName
121	IGCM_debug_PrintVariables 3 config_UserChoices_LongName
122	IGCM_debug_PrintVariables 3 config_UserChoices_TagName
123	IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
124	IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
125	IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
126	IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
127	echo
128
129	#==================================
130
131	R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
132	#
133	IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents
134	#
135	IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Post SeasonalFrequency
136	#
137	# Determine period for seasonnal average. Default : value from AA_job if any
138	#
139	DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )}
140	#
141	DateEnd=${DateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )}
142	#
143	freq=$( echo ${config_Post_SeasonalFrequency} \| sed -e "s/[yY]//" )
144	#
145	an_fin=$( expr $( IGCM_date_ConvertGregorianDateToJulian $DateEnd ) / 1000 )
146	an_deb=$( IGCM_date_YearDigit $(( an_fin - freq + 1 )) )
147	an_fin=$( IGCM_date_YearDigit ${an_fin} )
148	#
149	# For each component selected determine which files need post-processing
150	#
151	for comp in ${config_ListOfComponents[*]} ; do
152	#
153	IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp}
154	eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1
155	#
156	card=${CARD_DIR}/COMP/${compname}.card
157	IGCM_card_DefineArrayFromOption ${card} OutputFiles List
158	#
159	ListFilesName=${compname}_OutputFiles_List
160	eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1
161	#
162	if [ X${FileName0} != X${NULL_STR} ] ; then
163	#
164	#IGCM_debug_Print 1 "Component : ${compname}"
165	#
166	# INITIALISATION
167	#
168	eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1
169	typeset i=0
170	#
171	until [ $i -eq $NbFiles ]; do
172	#
173	eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1
174	eval file_in=${file_in_}
175	let $(( i_ = i+2 ))
176	eval flag_post_=\${${ListFilesName}[$i_]} > /dev/null 2>&1
177	eval flag_post=${flag_post_}
178	#
179	if [ X${flag_post} != XNONE ] ; then
180	#
181	# Initialize ${flag_post}_${compname}_${post_freq}
182	#
183	eval ${flag_post}_${compname}_SeasonalFrequency=true
184	fi
185	let $(( i=i+3 ))
186	done
187	fi
188
189	for element in $( set \| grep Post_ \| grep ${compname}_SeasonalFrequency \| grep -i "=true" ) ; do
190	#
191	FILE=$( echo ${element} \| awk -F "_${compname}" '{print $1}' \| awk "-FPost_" '{print $2}' )
192	#
193	IGCM_card_DefineArrayFromOption ${card} Post_${FILE} Patches
194	#
195	# CREATE LIST
196	#
197	DIRECTORY=${R_SAVE}/${comp}/Analyse/SE
198	#
199	TestedFile=${config_UserChoices_JobName}_SE_${an_deb}_${an_fin}_${FILE}.nc
200	#
201	if [ ! -f ${DIRECTORY}/${TestedFile} ] ; then
202	eval set +A LISTE_FILE_${comp} \$\{LISTE_FILE_${comp}[*]} ${FILE}
203	eval set +A LISTE_PATCHES_${FILE} \$\{${compname}_Post_${FILE}_Patches[*]}
204	if [ X$( eval echo \${LISTE_PATCHES_${FILE}[0]} ) != X${NULL_STR} ]; then
205	for Patch in $( eval echo \${LISTE_PATCHES_${FILE}[*]} ); do
206	if [ Xload${Patch} != X ] ; then
207	. ${libIGCM}/libIGCM_post/IGCM_${Patch}.ksh
208	eval load${Patch}=loaded
209	fi
210	done
211	fi
212	fi
213	#
214	done # for element
215	done # for comp
216
217	for comp in ${config_ListOfComponents[*]} ; do
218	#
219	eval R_OUT_${comp}=${R_SAVE}/${comp}
220	#
221	i=0
222	for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do
223	#
224	# Determine in which output can we find file
225	# IE : Output/MO or Output/DA or ...
226	#
227	FlagDir=$( echo ${file} \| awk -F "_" '{print $1}' )
228	case ${FlagDir} in
229	*Y) FreqDir=YE ;;
230	*M) FreqDir=MO ;;
231	5D\|1D\|*D) FreqDir=DA ;;
232	HF) FreqDir=HF ;;
233	INS) FreqDir=INS ;;
234	esac
235	#
236	RESULT_SE=${config_UserChoices_JobName}_SE_${an_deb}_${an_fin}_${file}.nc
237	# Do not redoo an existing SE
238	if [ -f ${R_SAVE}/${comp}/Analyse/SE/${RESULT_SE} ] ; then
239	continue
240	fi
241	#
242	eval file_path=\${R_OUT_${comp}}/Output/${FreqDir}/
243	#
244	case ${config_UserChoices_PeriodLength} in
245	# For Yearly simulation :
246	1Y\|1y)
247	(( an = an_deb ))
248	# Initialize array
249	set -A liste_file_se
250	set -A liste_file_se_tmp
251	while [ ${an} -le ${an_fin} ] ; do
252	moisL=$( IGCM_date_DaysInMonth ${an} ${mois} )
253	#
254	an4=$(printf "%04i\n" ${an} )
255	#
256	diy=$( IGCM_date_DaysInYear $an4 )
257	afin=$( IGCM_date_AddDaysToGregorianDate ${an4}0101 $(( diy - 1 )) )
258	date=${an4}0101_${afin}
259	set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc
260	set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc
261	(( an = an + 1 ))
262	done
263	#
264	IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH}
265	eval ExitFlag=false
266	IGCM_debug_Verif_Exit_Post
267
268	# Apply IGCM_Patch if needed
269	if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then
270	for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do
271	for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do
272	IGCM_${Patch} ${file_t}
273	done
274	done
275	fi
276
277	for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do
278	#
279	(( nb = ${mois} - 1 ))
280	#
281	OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc
282	IGCM_sys_ncra -O -d time_counter,${nb},,12 ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]}
283	done
284	IGCM_sys_Rm ${liste_file_se_tmp[*]}
285	eval ExitFlag=false
286	IGCM_debug_Verif_Exit_Post
287	;;
288	# For a Multi-Year simulation :
289	Y\|y)
290	PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} \| awk -F '[yY]' '{print $1}' )
291	(( an = an_deb ))
292	# Initialize array
293	set -A liste_file_se
294	set -A liste_file_se_tmp
295	while [ ${an} -le ${an_fin} ] ; do
296	moisL=$( IGCM_date_DaysInMonth ${an} ${mois} )
297	#
298	an4=$(printf "%04i\n" ${an} )
299	#
300	(( diy = 0 ))
301	(( ian = 0 ))
302	while [ ${ian} -lt ${PeriodLengthInYears} ] ; do
303	#
304	ian4=$(printf "%04i\n" $(( an + ian )) )
305	(( diy = diy + $( IGCM_date_DaysInYear $ian4 ) ))
306	(( ian = ian + 1 ))
307	done
308	afin=$( IGCM_date_AddDaysToGregorianDate ${an4}0101 $(( diy - 1 )) )
309	date=${an4}0101_${afin}
310	set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc
311	set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc
312	(( an = an + PeriodLengthInYears ))
313	done
314	#
315	IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH}
316	eval ExitFlag=false
317	IGCM_debug_Verif_Exit_Post
318
319	# Apply IGCM_Patch if needed
320	if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then
321	for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do
322	for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do
323	IGCM_${Patch} ${file_t}
324	done
325	done
326	fi
327
328	for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do
329	#
330	(( nb = ${mois} - 1 ))
331	#
332	OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc
333	IGCM_sys_ncra -O -d time_counter,${nb},,12 ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]}
334	done
335	IGCM_sys_Rm ${liste_file_se_tmp[*]}
336	eval ExitFlag=false
337	IGCM_debug_Verif_Exit_Post
338	;;
339	# For Monthly simulation :
340	1M\|1m)
341	for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do
342	#
343	(( nb = ${mois} - 1 ))
344	#
345	OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc
346	#
347	(( an = an_deb ))
348	# Initialize array
349	set -A liste_file_se
350	set -A liste_file_se_tmp
351	while [ ${an} -le ${an_fin} ] ; do
352	moisL=$( IGCM_date_DaysInMonth ${an} ${mois} )
353	#
354	an4=$(printf "%04i\n" ${an} )
355	#
356	date=${an4}${mois}01_${an4}${mois}${moisL}
357	set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc
358	set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc
359	(( an = an + 1 ))
360	done
361	#
362	IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH}
363	eval ExitFlag=false
364	IGCM_debug_Verif_Exit_Post
365
366	# Apply IGCM_Patch if needed
367	if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then
368	for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do
369	for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do
370	IGCM_${Patch} ${file_t}
371	done
372	done
373	fi
374
375	IGCM_sys_ncra -O ${liste_file_se_tmp} ${OUT_SE[${nb}]}
376	MENAGE_LOCAL ${liste_file_se_tmp}
377	#
378	IGCM_debug_Verif_Exit_Post
379	done
380	;;
381
382	# For Multi-Monthly simulation :
383	M\|m)
384	PeriodLengthInMonths=$( echo ${config_UserChoices_PeriodLength} \| awk -F '[mM]' '{print $1}' )
385	# Must be a divisor of 12 !!! e.g. 2,3,4 and 6 only
386	if ( [ $PeriodLengthInMonths -ne 2 ] && \
387	[ $PeriodLengthInMonths -ne 3 ] && \
388	[ $PeriodLengthInMonths -ne 4 ] && \
389	[ $PeriodLengthInMonths -ne 6 ] ) ; then
390	echo "create_se.job can't work with this monthly Period : ",$PeriodLengthInMonths,"M !!"
391	echo "It must be a divisor of twelve."
392	echo "We will stop there."
393	IGCM_debug_Verif_Exit_Post
394	else
395	#
396	(( NbSet = 12 / PeriodLengthInMonths ))
397	(( moisd = 01 ))
398	(( Mset = 1 ))
399	while [ ${Mset} -le ${NbSet} ] ; do
400	moisf=$(printf "%02i\n" $(( moisd + PeriodLengthInMonths - 1 )) )
401	moisd=$(printf "%02i\n" ${moisd} )
402	#
403	(( an = an_deb ))
404	# Initialize array
405	set -A liste_file_se
406	set -A liste_file_se_tmp
407	while [ ${an} -le ${an_fin} ] ; do
408	moisL=$( IGCM_date_DaysInMonth ${an} ${moisf} )
409	#
410	an4=$(printf "%04i\n" ${an} )
411	#
412	date=${an4}${moisd}01_${an4}${moisf}${moisL}
413	set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc
414	set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc
415	(( an = an + 1 ))
416	done
417	#
418	IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH}
419	eval ExitFlag=false
420	IGCM_debug_Verif_Exit_Post
421
422	# Apply IGCM_Patch if needed
423	if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then
424	for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do
425	for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do
426	IGCM_${Patch} ${file_t}
427	done
428	done
429	fi
430
431	(( imois = moisd ))
432	(( i = 0 ))
433	while [ ${imois} -le ${moisf} ] ; do
434	#
435	(( nb = ${imois} - 1 ))
436	#
437	OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${imois}_${an_deb}_${an_fin}_${file}.nc
438	IGCM_sys_ncra -O -d time_counter,${i},,${PeriodLengthInMonths} ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]}
439	(( imois = imois + 1 ))
440	(( i = i + 1 ))
441	done
442
443	IGCM_sys_Rm ${liste_file_se_tmp[*]}
444	eval ExitFlag=false
445	IGCM_debug_Verif_Exit_Post
446	moisf=$(printf "%02i\n" $(( moisf + 1 )) )
447
448	(( Mset = Mset + 1 ))
449	done
450	fi
451	;;
452	D\|d)
453	for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do
454	#
455	(( nb = ${mois} - 1 ))
456	#
457	OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc
458	#
459	(( an = an_deb ))
460	# Initialize array
461	set -A liste_file_se
462	set -A liste_file_se_tmp
463	while [ ${an} -le ${an_fin} ] ; do
464	moisL=$( IGCM_date_DaysInMonth ${an} ${mois} )
465	#
466	an4=$(printf "%04i\n" ${an} )
467	#
468	length_d=$(( ${config_UserChoices_PeriodLength} - 1 ))
469	# for one day
470	if [ ${length_d} -eq 1 ] ; then
471	(( length_d = 0 ))
472	fi
473	(( day = 1 ))
474	while [ ${day} -le ${moisL} ] ; do
475	day2=$(printf "%02i\n" ${day} )
476	day_beg=${an4}${mois}${day2}
477	day_end=$( IGCM_date_AddDaysToGregorianDate ${day_beg} ${length_d} )
478	date=${an4}${mois}${day_beg}_${an4}${mois}${day_end}
479	set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc
480	set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc
481	(( day = day + 1 ))
482	done
483	(( an = an + 1 ))
484	done
485	#
486	IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH}
487	eval ExitFlag=false
488	IGCM_debug_Verif_Exit_Post
489
490	# Apply IGCM_Patch if needed
491	if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then
492	for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do
493	for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do
494	IGCM_${Patch} ${file_t}
495	done
496	done
497	fi
498
499	IGCM_sys_ncra -O ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]}
500	IGCM_sys_Rm ${liste_file_se_tmp[*]}
501	eval ExitFlag=false
502	IGCM_debug_Verif_Exit_Post
503	done
504	;;
505	esac
506	#
507	IGCM_sys_ncrcat -O ${OUT_SE[*]} ${RESULT_SE}
508	#
509	IGCM_sys_Rm ${OUT_SE[*]}
510	#
511	${ncatted} -a modulo,time_counter,c,c," " ${RESULT_SE}
512	#
513	eval IGCM_sys_Put_Out ${RESULT_SE} \${R_OUT_${comp}}/Analyse/SE/${RESULT_SE}
514	IGCM_sys_Rm ${RESULT_SE}
515	#
516	eval ExitFlag=false
517	IGCM_debug_Verif_Exit_Post
518	done
519	done
520
521	# DODS copy
522	for comp in ${config_ListOfComponents[*]} ; do
523	for SE_Dir in $( ls ${R_SAVE}/${comp}/Analyse/ 2>&1 \| grep SE ) ; do
524	[ -d ${R_SAVE}/${comp}/Analyse/${SE_Dir} ] && IGCM_sys_Put_Dods ${comp}/Analyse/${SE_Dir}
525	done
526	done
527
528	YEARS=${an_deb}_${an_fin}
529
530	# clean environment variables and export usefull one :
531	if [ X$( hostname -s ) = Xrhodes ] ; then
532	LISTE_ENV=$( env \| grep -iv MYLANG \| grep -iv HOST \| grep -iv LOGIN \| grep -iv config_ \| grep -iv R_ \| grep -iv libIGCM \| grep -iv PERIOD \
533	\| grep -iv DMFDIR \| grep -iv AN_\| grep -iv YEARS \| grep -iv ex \| grep -iv RESOL_ \| grep -iv PATH \| grep -iv WORKDIR \| grep -iv USER \
534	\| grep -iv LOGNAME \| grep -iv PROFILE \| grep -iv ENV \| grep -iv TMPDIR \| grep -iv POST_DIR \| grep -iv DB \|awk -F= '{print $1}' )
535
536	for variables in ${LISTE_ENV} ; do
537	unset ${variables}
538	done
539	fi
540
541	export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone
542	export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_SRF
543	export R_SAVE; export config_UserChoices_JobName; export config_UserChoices_TagName; export YEARS;
544	listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_SRF,R_SAVE,config_UserChoices_JobName,config_UserChoices_TagName,YEARS"
545	export listVarEnv;
546
547	#D-
548	# --------------------------------------------------------------------
549	#D- Test if all was right before ATLAS
550	# --------------------------------------------------------------------
551	IGCM_debug_Verif_Exit_Post
552
553	if [ ${config_UserChoices_TagName} = "IPSLCM4_v1_OASIS3" ] \|\| \
554	[ ${config_UserChoices_TagName} = "IPSLCM4_v2" ] \|\| \
555	[ ${config_UserChoices_TagName} = "IPSL_ESM_V1" ] ; then
556	#
557	IGCM_sys_QsubPost atlas_ORCHIDEE ;
558	IGCM_sys_QsubPost atlas_LMDZ ;
559	IGCM_sys_QsubPost atlas_ORCA_LIM ;
560	IGCM_sys_QsubPost additionnal ;
561	#
562	elif [ ${config_UserChoices_TagName} = "LMDZOR" ] \|\| \
563	[ ${config_UserChoices_TagName} = "LMDZ4OR" ] \|\| \
564	[ ${config_UserChoices_TagName} = "LMDz4OR_v2" ] ; then
565	#
566	IGCM_sys_QsubPost atlas_LMDZ ;
567	IGCM_sys_QsubPost atlas_ORCHIDEE ;
568	#
569	elif [ ${config_UserChoices_TagName} = "OL" ] \|\| \
570	[ ${config_UserChoices_TagName} = "OL2" ] ; then
571	#
572	IGCM_sys_QsubPost atlas_ORCHIDEE ;
573	#
574	elif [ ${config_UserChoices_TagName} = "ORCA2_LIM" ] ; then
575	#
576	IGCM_sys_QsubPost atlas_ORCA_LIM ;
577	IGCM_sys_QsubPost additionnal ;
578	#
579	fi

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