#-Q- platine #!/usr/bin/ksh
#-Q- platine ##################
#-Q- platine ## PLATINE   CEA ##
#-Q- platine ##################
#-Q- platine #BSUB -J ATL_LMDZ          # Nom du job
#-Q- platine #BSUB -N                   # message a la fin du job
#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
#-Q- platine #BSUB -W 1:00              # Limite temps
#-Q- sx8brodie #######################
#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
#-Q- sx8brodie #######################
#-Q- sx8brodie #QSUB -r ATL_LMDZ            # Nom du job
#-Q- sx8brodie #QSUB -lT 2:00:00            # limite en temps total
#-Q- sx8brodie #QSUB -eo                    # rassemble standard error et output
#-Q- sx8brodie #QSUB -J m
#-Q- sx8brodie #QSUB -l mpp_p=2
#-Q- sx8brodie #QSUB -s /bin/ksh            # shell du job
#-Q- sx8mercure #!/bin/ksh
#-Q- sx8mercure ######################
#-Q- sx8mercure ## SX8MERCURE   CEA ##
#-Q- sx8mercure ######################
#-Q- sx8mercure #PBS -N  ATL_LMDZ           # Nom du job
#-Q- sx8mercure #PBS -j o                   # regroupement des stdout et stderr
#-Q- sx8mercure #PBS -S /usr/bin/ksh        # shell de soumission
#-Q- sx8mercure #PBS -l memsz_job=1gb       # Limite memoire a 1 Go
#-Q- sx8mercure #PBS -l cputim_job=2:00:00  # Limite temps a 2 heures
#-Q- sx8mercure #PBS -q scalaire
#-Q- default #!/bin/ksh
#-Q- default ##################
#-Q- default ## DEFAULT HOST ##
#-Q- default ##################

# $Date$
# $Author$
# $Revision$
# IPSL (2006)
#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC

date

#-Q- sx8brodie export OMP_NUM_THREADS=1

#########################################################################

. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh ;
. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh     ; #IGCM_debug_Check
. ${libIGCM}/libIGCM_card/libIGCM_card.ksh   ; #IGCM_card_Check

#######################################################################

#set -vx

R_ATLAS=ATLAS/SE_${YEARS}
R_OUT_OCE=${R_SAVE}/OCE

cd ${RUN_DIR_PATH}

# --------------------------------------------
# Insert your commands between III...III lines 
# and precise produced directories to save
# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII

IGCM_sys_Get ${R_IN}/BC/OCE/${config_UserChoices_TagName}/${RESOL_OCE}/LEVITUS_1m_Temperature_Pot_Ice_nomask.nc .
IGCM_sys_Get ${R_IN}/BC/OCE/${config_UserChoices_TagName}/${RESOL_OCE}/LEVITUS_1m_Salinity_Ice_nomask.nc .

IGCM_sys_Get ${R_OUT_OCE}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc ${RUN_DIR_PATH}/SE_grid_T.nc
IGCM_sys_Get ${R_OUT_OCE}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc ${RUN_DIR_PATH}/SE_grid_U.nc
IGCM_sys_Get ${R_OUT_OCE}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc ${RUN_DIR_PATH}/SE_grid_V.nc
IGCM_sys_Get ${R_OUT_OCE}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc ${RUN_DIR_PATH}/SE_grid_W.nc

#ferret -gif -script news2.jnl "${YEARS}" "${config_UserChoices_JobName}" "${RESOL_OCE}"
atlas -o ${RUN_DIR_PATH}/${R_ATLAS}/ADD -p landscape=true,angle=-90,nup=1x1 ${FER_ATLAS}/atlas_p_ORCA2_add_*.cfg ${config_UserChoices_JobName}

# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII

# Put ferret journal files together
for file in $( ls ${R_ATLAS}/ADD/*/*jnl ) ; do  
    echo -e "\n\n################################" ; 
    echo -e "$file\n" ; cat $file ; 
done  > ${R_ATLAS}/ADD/allferretscript.txt

# Clear some files
find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;

# Save files
IGCM_sys_Put_Dir ATLAS ${R_SAVE}

IGCM_sys_Rm -Rf ATLAS
IGCM_sys_Rm -f SE_grid_?.nc

# DODS copy
[ -d ${R_SAVE}/${R_ATLAS} ] && IGCM_sys_Put_Dods ${R_ATLAS}

date