#-Q- platine #!/usr/bin/ksh
#-Q- platine ##################
#-Q- platine ## PLATINE   CEA ##
#-Q- platine ##################
#-Q- platine #BSUB -J ATL_OPA           # Nom du job
#-Q- platine #BSUB -N                   # message a la fin du job
#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
#-Q- platine #BSUB -W 1:00              # Limite temps
#-Q- sx8brodie #######################
#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
#-Q- sx8brodie #######################
#-Q- sx8brodie #QSUB -r ATL_OPA              # Nom du job
#-Q- sx8brodie #QSUB -lT 3:00:00             # limite en temps total
#-Q- sx8brodie #QSUB -eo                     # rassemble standard error et output
#-Q- sx8brodie #QSUB -J m
#-Q- sx8brodie #QSUB -l mpp_p=2
#-Q- sx8brodie #QSUB -s /bin/ksh             # shell du job
#-Q- sx8mercure #!/bin/ksh
#-Q- sx8mercure ######################
#-Q- sx8mercure ## SX8MERCURE   CEA ##
#-Q- sx8mercure ######################
#-Q- sx8mercure #PBS -N  ATL_OPA             # Nom du job
#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
#-Q- sx8mercure #PBS -l cputim_job=2:00:00   # Limite temps a 2 heures
#-Q- sx8mercure #PBS -q scalaire
#-Q- default #!/bin/ksh
#-Q- default ##################
#-Q- default ## DEFAULT HOST ##
#-Q- default ##################

# $Date$
# $Author$
# $Revision$
# IPSL (2006)
#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC

#set -vx 

date

#-Q- sx8brodie export OMP_NUM_THREADS=1

########################################################################

. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh ;
. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh     ; #IGCM_debug_Check
. ${libIGCM}/libIGCM_card/libIGCM_card.ksh   ; #IGCM_card_Check

########################################################################

#set -vx 

R_ATLAS=ATLAS/SE_${YEARS}
R_OUT_OCE=${R_SAVE}/OCE
R_OUT_ICE=${R_SAVE}/ICE

cd ${RUN_DIR_PATH}

# --------------------------------------------
# Insert your commands between III...III lines
# and precise produced directories to save
# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII

IGCM_sys_Get ${R_OUT_OCE}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc ${RUN_DIR_PATH}
IGCM_sys_Get ${R_OUT_OCE}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc ${RUN_DIR_PATH}
IGCM_sys_Get ${R_OUT_OCE}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc ${RUN_DIR_PATH}
IGCM_sys_Get ${R_OUT_OCE}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc ${RUN_DIR_PATH}
IGCM_sys_Get ${R_OUT_ICE}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc      ${RUN_DIR_PATH}

atlas -o ${RUN_DIR_PATH}/${R_ATLAS}/OCE_T -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag1_[ab].cfg     ${RUN_DIR_PATH}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
atlas -o ${RUN_DIR_PATH}/${R_ATLAS}/OCE_U -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_U.cfg        ${RUN_DIR_PATH}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc
atlas -o ${RUN_DIR_PATH}/${R_ATLAS}/OCE_V -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_V.cfg        ${RUN_DIR_PATH}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc
#atlas -o ${RUN_DIR_PATH}/${R_ATLAS}/OCE_W -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_W.cfg        ${RUN_DIR_PATH}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc
atlas -o ${RUN_DIR_PATH}/${R_ATLAS}/OCE   -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_[de].cfg     ${RUN_DIR_PATH}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
atlas -o ${RUN_DIR_PATH}/${R_ATLAS}/ICE   -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}LIM_diag0_[abc].cfg ${RUN_DIR_PATH}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc

# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII

# Put ferret journal files together
for file in $( ls ${R_ATLAS}/OCE_T/*/*jnl ) ; do  
    echo -e "\n\n################################" ; 
    echo -e "$file\n" ; cat $file ; 
done  > ${R_ATLAS}/OCE_T/allferretscript.txt

for file in $( ls ${R_ATLAS}/OCE_U/*/*jnl ) ; do  
    echo -e "\n\n################################" ; 
    echo -e "$file\n" ; cat $file ; 
done  > ${R_ATLAS}/OCE_U/allferretscript.txt

for file in $( ls ${R_ATLAS}/OCE_V/*/*jnl ) ; do  
    echo -e "\n\n################################" ; 
    echo -e "$file\n" ; cat $file ; 
done  > ${R_ATLAS}/OCE_V/allferretscript.txt

for file in $( ls ${R_ATLAS}/OCE/*/*jnl ) ; do  
    echo -e "\n\n################################" ; 
    echo -e "$file\n" ; cat $file ; 
done  > ${R_ATLAS}/OCE/allferretscript.txt

for file in $( ls ${R_ATLAS}/ICE/*/*jnl ) ; do  
    echo -e "\n\n################################" ; 
    echo -e "$file\n" ; cat $file ; 
done  > ${R_ATLAS}/ICE/allferretscript.txt

# Clear some files
find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;

# Save files
IGCM_sys_Put_Dir ATLAS ${R_SAVE}

IGCM_sys_Rm -Rf ATLAS

IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_[TUVW].nc 
IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc      

# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
# Additionnal post-processing

#IGCM_sys_Get /u/rech/ces/rces599/CPL/ORCA2xLMD9671/Oce/LEVITUS_1m_Temperature_Pot_Ice_nomask.nc .
#IGCM_sys_Get /u/rech/ces/rces599/CPL/ORCA2xLMD9671/Oce/LEVITUS_1m_Salinity_Ice_nomask.nc .
#IGCM_sys_Get /u/rech/psl/rpsl655/database/climato/ORCA2.0_Levitus.nc .

#ferret -gif -script news2.jnl "${YEARS}" "${EXP}"

# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII

# Put ferret journal files together
#for file in $( ls */*jnl ) ; do  
#    echo -e "\n\n################################" ; 
#    echo -e "$file\n" ; cat $file ; 
#done  > allferretscript.txt

# Clear some files
#find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;

# Save files
#IGCM_sys_Put_Dir Images ${R_SAVE}/ATLAS

# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII

# DODS copy
[ -d ${R_SAVE}/${R_ATLAS} ] && IGCM_sys_Put_Dods ${R_ATLAS}

date