#-Q- platine #!/usr/bin/ksh
#-Q- platine ##################
#-Q- platine ## PLATINE   CEA ##
#-Q- platine ##################
#-Q- platine #BSUB -J ATL_ORCH          # Nom du job
#-Q- platine #BSUB -N                   # message a la fin du job
#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
#-Q- platine #BSUB -W 1:00              # Limite temps
#-Q- sx8brodie #######################
#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
#-Q- sx8brodie #######################
#-Q- sx8brodie #QSUB -r ATL_ORCH             # Nom du job
#-Q- sx8brodie #QSUB -lT 01:00:00            # limite en temps total
#-Q- sx8brodie #QSUB -eo                     # rassemble standard error et output
#-Q- sx8brodie #QSUB -J m
#-Q- sx8brodie #QSUB -l mpp_p=4
#-Q- sx8brodie #QSUB -s /bin/ksh             # shell du job
#-Q- sx8mercure #!/bin/ksh
#-Q- sx8mercure ######################
#-Q- sx8mercure ## SX8MERCURE   CEA ##
#-Q- sx8mercure ######################
#-Q- sx8mercure #PBS -N  ATL_ORCH            # Nom du job
#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
#-Q- sx8mercure #PBS -l cputim_job=1:00:00   # Limite temps a 2 heures
#-Q- sx8mercure #PBS -q scalaire
#-Q- default #!/bin/ksh
#-Q- default ##################
#-Q- default ## DEFAULT HOST ##
#-Q- default ##################

# $Date$
# $Author$
# $Revision$
# IPSL (2006)
#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC

date

#-Q- sx8brodie export OMP_NUM_THREADS=1

#set -vx

#D- Low level debug : to bypass lib test checks and stack construction
#D- Default : value from AA_job if any
DEBUG_debug=${DEBUG_debug:=false}

if [ ${DEBUG_debug} = true ] ; then
    echo $RUN_DIR_PATH
    MYWORK=$(echo $HOME | sed -e "s|home|scratchdir|")
    RUN_DIR_PATH=${MYWORK}/IGCM_OUT/${config_UserChoices_TagName}/${config_UserChoices_JobName}/MO2SE.${an_fin}
fi

########################################################################

. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh ;
. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh     ; #IGCM_debug_Check
. ${libIGCM}/libIGCM_card/libIGCM_card.ksh   ; #IGCM_card_Check

########################################################################

#set -vx 

R_ATLAS=ATLAS/SE_${YEARS}
R_OUT_SRF=${R_SAVE}/SRF

RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCHIDEE_${YEARS}
IGCM_sys_MkdirWork ${RUN_DIR}
IGCM_sys_Cd ${RUN_DIR}

# --------------------------------------------
# Insert your commands between III...III lines 
# and precise produced directories to save
# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII

IGCM_sys_Get ${R_OUT_SRF}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc ${RUN_DIR}

atlas -o ${RUN_DIR}/${R_ATLAS}/SRF -l ${FER_ATLAS}/atlas_p_ORCHIDEE_diag1_*.cfg \
                                       ${FER_ATLAS}/atlas_p_SECHIBA_diag1_*.cfg \
                                       ${FER_ATLAS}/atlas_p_ORCHIDEE_diag2_a.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc

# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII

# Put ferret journal files together
for file in $( ls ${R_ATLAS}/SRF/*/*jnl ) ; do  
    echo -e "\n\n################################" ; 
    echo -e "$file\n" ; cat $file ; 
done  > ${R_ATLAS}/SRF/allferretscript.txt

# Clear some files
find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;

# Save files
IGCM_sys_Put_Dir ATLAS ${R_SAVE}

IGCM_sys_Rm -Rf ATLAS
IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc

# DODS copy
[ -d ${R_SAVE}/${R_ATLAS} ] && IGCM_sys_Put_Dods ${R_ATLAS}

date