1 | #-Q- platine #!/usr/bin/ksh |
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2 | #-Q- platine ################## |
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3 | #-Q- platine ## PLATINE CEA ## |
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4 | #-Q- platine ################## |
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5 | #-Q- platine #BSUB -J ::Jobname:: # nom de la requete |
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6 | #-Q- platine #BSUB -N # message a la fin du job |
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7 | #-Q- platine #BSUB -o Script_Output_::Jobname::.1 # nom du fichier de sortie |
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8 | #-Q- platine #BSUB -n ::JobNumProcTot:: # reservation des processeurs pour le job |
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9 | #-Q- platine #BSUB -W 1:00 # Limite temps |
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10 | #-Q- platine BATCH_NUM_PROC_TOT=$SLURM_NPROCS |
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11 | #-Q- sx8brodie ####################### |
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12 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
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13 | #-Q- sx8brodie ####################### |
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14 | #-Q- sx8brodie #PBS -N ::Jobname:: # nom de la requete |
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15 | #-Q- sx8brodie #PBS -m a # message a la fin du job |
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16 | #-Q- sx8brodie #PBS -j o # regroupement des sorties du job : standard error et output |
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17 | #-Q- sx8brodie #PBS -o Script_Output_::Jobname::.1 # nom du fichier de sortie |
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18 | #-Q- sx8brodie #PBS -S /usr/bin/ksh # shell de soumission |
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19 | #-Q- sx8brodie #PBS -v BATCH_NUM_PROC_TOT=::JobNumProcTot:: |
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20 | #-Q- sx8brodie #PBS -q ::JobClass:: # classe multi pour BATCH_NUM_PROC_TOT superieur a 2, mono sinon |
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21 | #-Q- sx8brodie #PBS -l cpunum_job=${BATCH_NUM_PROC_TOT} # reservation des processeurs pour le job |
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22 | #-Q- sx8brodie #PBS -l memsz_job=6.0gb # Limite memoire |
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23 | #-Q- sx8brodie #PBS -l cputim_job=1:00:00 # Limite temps |
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24 | #-Q- sx8mercure #!/bin/ksh |
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25 | #-Q- sx8mercure ###################### |
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26 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
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27 | #-Q- sx8mercure ###################### |
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28 | #-Q- sx8mercure #PBS -N ::Jobname:: # nom de la requete |
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29 | #-Q- sx8mercure #PBS -m a # message a la fin du job |
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30 | #-Q- sx8mercure #PBS -j o # regroupement des sorties du job : standard error et output |
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31 | #-Q- sx8mercure #PBS -o Script_Output_::Jobname::.1 # nom du fichier de sortie |
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32 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
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33 | #-Q- sx8mercure #PBS -v BATCH_NUM_PROC_TOT=::JobNumProcTot:: |
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34 | #-Q- sx8mercure #PBS -l cpunum_job=${BATCH_NUM_PROC_TOT} # reservation des processeurs pour le job |
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35 | #-Q- sx8mercure #PBS -l memsz_job=6.0gb # limite memoire |
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36 | #-Q- sx8mercure #PBS -l elapstim_req=00:30:00 # limite en temps elapsed |
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37 | #-Q- default #!/bin/ksh |
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38 | #-Q- default ################## |
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39 | #-Q- default ## DEFAULT HOST ## |
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40 | #-Q- default ################## |
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41 | #-Q- default #For MPI use, uncomment next line : |
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42 | #-Q- default #BATCH_NUM_PROC_TOT=::JobNumProcTot:: |
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43 | |
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44 | # $Date$ |
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45 | # $Author$ |
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46 | # $Revision$ |
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47 | # IPSL (2006) |
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48 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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49 | |
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50 | #set -eu |
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51 | #set -vx |
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52 | |
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53 | date |
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54 | echo |
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55 | echo "#######################################" |
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56 | echo "# ANOTHER GREAT SIMULATION #" |
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57 | echo "#######################################" |
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58 | echo |
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59 | |
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60 | #D--------------------------------------------------------------------== |
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61 | #D--------------------------------------------------------------------== |
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62 | #D- |
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63 | #D- Job to launch IGCM models |
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64 | #D- |
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65 | #D--------------------------------------------------------------------== |
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66 | #D--------------------------------------------------------------------== |
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67 | #D- |
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68 | |
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69 | MODIPSL=::modipsl:: |
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70 | libIGCM=${MODIPSL}/libIGCM |
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71 | |
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72 | #D--------------------------------------------------------------------== |
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73 | #D- -1. User modification place |
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74 | #D- - Job Verbosity |
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75 | #D- - PeriodNb |
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76 | #D--------------------------------------------------------------------== |
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77 | |
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78 | #D- Increased verbosity (1, 2, 3) |
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79 | Verbosity=3 |
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80 | #D- Number of execution in one job |
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81 | PeriodNb=1 |
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82 | |
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83 | #D- |
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84 | # -------------------------------------------------------------------- |
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85 | #D- ! Optionnal features /!\ Use with care ! |
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86 | # -------------------------------------------------------------------- |
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87 | |
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88 | #D- Low level debug : to bypass lib test checks and stack construction |
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89 | #D- Default=true |
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90 | DEBUG_debug=false |
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91 | |
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92 | #D- Set DEBUG_sys to false to disable output calls of function |
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93 | #D- Default=true |
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94 | #DEBUG_sys=false |
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95 | |
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96 | #D- Define running directory |
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97 | #D- Default=${TMPDIR} ie temporary batch directory |
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98 | #RUN_DIR_PATH=/workdir4/rech/ces/rces452/BABATEST/TESTPOST |
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99 | |
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100 | #D- Define submit directory |
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101 | #D- Default= where you launch qsub |
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102 | #SUBMIT_DIR=/workdir4/rech/ces/rces452/SCRIPT_V1/modipsl/config/IPSLCM4_v1_OASIS3/EXP01 |
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103 | |
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104 | #D- Turn in dry run mode ? (0,1,2,3) |
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105 | #D- Default=0 |
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106 | #DRYRUN=3 |
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107 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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108 | # ------------------------------------------------------------------------------------- |
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109 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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110 | # | | Cp/Exe param files | | Chmod | | |
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111 | # | | Qsub | | | | |
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112 | # ------------------------------------------------------------------------------------- |
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113 | # | 0 | yes | yes | yes | yes | |
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114 | # ------------------------------------------------------------------------------------- |
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115 | # | 1 | yes | yes | yes | no | |
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116 | # ------------------------------------------------------------------------------------- |
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117 | # | 2 | yes | yes | no | no | |
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118 | # ------------------------------------------------------------------------------------- |
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119 | # | 3 | yes | no | no | no | |
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120 | # ------------------------------------------------------------------------------------- |
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121 | |
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122 | #D- Define input file root directory |
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123 | #D- Default=/u/rech/ces/rces452/IGCM |
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124 | #R_IN=/u/rech/por/rpor111/DATA |
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125 | |
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126 | #D- |
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127 | #D--------------------------------------------------------------------== |
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128 | #D- 0. System Environment |
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129 | #D- - Define variables for Number of processors |
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130 | #D- - Define MPI variables |
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131 | #D- - Define batch scheduler variables |
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132 | #D- - Source IGCM Library |
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133 | #D- - Get RESOLution in .resol file (temporary) |
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134 | #D--------------------------------------------------------------------== |
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135 | |
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136 | #D--------------------------------------------------------------------== |
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137 | |
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138 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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139 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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140 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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141 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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142 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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143 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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144 | #------- |
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145 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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146 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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147 | . ${libIGCM}/libIGCM_comp/libIGCM_comp.ksh |
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148 | . ${libIGCM}/libIGCM_post/libIGCM_post.ksh |
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149 | |
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150 | #D--------------------------------------------------------------------== |
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151 | |
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152 | #-- Resolution FLAG for oasis input |
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153 | RESOL=$(cat ${SUBMIT_DIR}/../.resol) |
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154 | #RESOL="ORCA2xLMD9671" |
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155 | |
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156 | #D- |
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157 | #D--------------------------------------------------------------------== |
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158 | #D- 1. INITIALIZE CONFIGURATION AND THEN COMPONENTS |
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159 | #D--------------------------------------------------------------------== |
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160 | |
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161 | # --------------------------------------------------------------------== |
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162 | #D- Initialize configuration : |
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163 | #D- - Simulation configuration |
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164 | #D- - Simulation parameters |
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165 | #D- - Execution parameter |
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166 | #D- - Define input files directory |
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167 | #D- - Read or initialize CumulPeriod |
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168 | #D- - run.card |
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169 | #D- |
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170 | # --------------------------------------------------------------------== |
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171 | IGCM_config_Initialize |
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172 | |
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173 | # --------------------------------------------------------------------== |
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174 | #D- Define, create and cd RUN_DIR |
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175 | #D- |
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176 | # --------------------------------------------------------------------== |
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177 | RUN_DIR=${RUN_DIR_PATH}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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178 | IGCM_sys_MkdirWork ${RUN_DIR} |
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179 | IGCM_sys_Cd ${RUN_DIR} |
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180 | |
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181 | # --------------------------------------------------------------------== |
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182 | #D- Initialize each components taking part |
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183 | #D- into simulation configuration : |
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184 | #D- - Define component executable |
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185 | #D- - Define Write Frequency by component "1M" "1D" ... |
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186 | #D- - Source ${comp}.driver |
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187 | #D- - Define Storage Places by component |
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188 | #D- - ${comp}_Initialize : |
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189 | #D- - Patterns to sed |
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190 | #D- - Variables from namelist |
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191 | #D- |
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192 | # --------------------------------------------------------------------== |
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193 | IGCM_comp_Initialize |
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194 | |
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195 | # --------------------------------------------------------------------== |
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196 | #D- Verify compatibility of period length and write frequencies |
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197 | #D- |
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198 | # --------------------------------------------------------------------== |
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199 | #IGCM_config_Check |
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200 | |
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201 | #D--------------------------------------------------------------------== |
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202 | #D- 2. ENTER THE DEEP EXECUTION LOOP |
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203 | #D- !!!! FASTEN YOUR SEAT BELTS !!!! |
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204 | #D- !!!!! PLEASE. !!!! |
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205 | #D- !! WE WILL CROSS TURBULENCES. !! |
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206 | #D--------------------------------------------------------------------== |
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207 | |
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208 | Period=1 |
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209 | while [ ${Period} -le ${PeriodNb} ]; do |
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210 | |
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211 | echo |
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212 | echo "Starting iteration ${Period} / ${PeriodNb}" |
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213 | |
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214 | #D- |
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215 | # ------------------------------------------------------------------ |
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216 | #D- COMPUTE AND DEFINE DATE STUFF. |
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217 | # ------------------------------------------------------------------ |
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218 | IGCM_config_PeriodStart |
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219 | #D- => ${PeriodDateBegin} |
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220 | #D- => ${PeriodDateEnd} |
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221 | #D- => ${CumulPeriod} |
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222 | #D- => ${DatesPeriod}=${PeriodDateBegin}_${PeriodDateEnd} |
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223 | #D- => ${PeriodLength} => JOURS=31 , 28, 29, 30 ; MOIS=0 ; ANS=0 |
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224 | #D- => update run.card value |
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225 | |
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226 | #D- |
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227 | # ------------------------------------------------------------------ |
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228 | #D- Get parameters text files updated by job (.def, namelist ...) |
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229 | #D- READ AND USE BY GCM AT EACH EXECUTION. |
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230 | # ------------------------------------------------------------------ |
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231 | IGCM_comp_GetInputParametersFiles |
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232 | |
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233 | #D- |
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234 | # ------------------------------------------------------------------ |
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235 | #D- Get initial state (Etat0, carteveg,relief...) |
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236 | #D- NECESSARY ONLY IF CumulPeriod= (=> NUMERO) == 1 |
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237 | #D- AND ???_Restart=NO |
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238 | #D- READ AND USE BY GCM FOR ONLY ONE EXECUTION. |
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239 | # ------------------------------------------------------------------ |
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240 | IGCM_comp_GetInputInitialStateFiles |
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241 | |
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242 | #D- |
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243 | # ------------------------------------------------------------------ |
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244 | #D- Get Smooth Files (special files in time LAND COVER CHANGE ...) |
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245 | #D- READ AND USE BY GCM AT SOME EXECUTIONS. |
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246 | # ------------------------------------------------------------------ |
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247 | IGCM_comp_GetInputSmoothFiles |
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248 | |
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249 | #D- |
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250 | # ------------------------------------------------------------------ |
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251 | #D- Get Boundaries Conditions (SST, WIND[X,Y,Z], LAI ...) |
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252 | #D- READ AND USE BY GCM AT EACH EXECUTION. |
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253 | # ------------------------------------------------------------------ |
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254 | IGCM_comp_GetInputBoundaryFiles |
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255 | |
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256 | #D- |
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257 | # ------------------------------------------------------------------ |
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258 | #D- Get restart files (restartphy.nc, orca_restart.nc ...) |
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259 | #D- READ AND USE BY GCM AT EACH EXECUTION. |
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260 | #D- |
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261 | #D- IF A COMPONENT DO NOT RESTART FROM PREVIOULSY COMPUTED RESTART |
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262 | #D- ONLY IF CumulPeriod= (=> NUMERO) == 1 |
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263 | #D- MUST EXECUTE CREATE ETAT0_LIMIT (TYPICALLY LMDZ AND ./create_etat0_limit.e) |
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264 | #D- |
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265 | #D- IF CumulPeriod == 1 |
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266 | #D- AND A COMPONENT RESTART FROM PREVIOULSY COMPUTED RESTART |
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267 | #D- MUST BRING THIS RESTART IN ${RUN_DIR_PATH} |
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268 | #D- |
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269 | #D- ELSE BRING RESTART FROM ${JobName} IN ${RUN_DIR_PATH} |
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270 | # ------------------------------------------------------------------ |
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271 | IGCM_comp_GetInputRestartFiles |
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272 | |
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273 | #D- |
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274 | # ------------------------------------------------------------------ |
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275 | #D- Test if all was right before Update |
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276 | # ------------------------------------------------------------------ |
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277 | IGCM_debug_Verif_Exit |
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278 | |
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279 | # ------------------------------------------------------------------ |
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280 | #D- Activate running environnement variables |
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281 | # ------------------------------------------------------------------ |
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282 | IGCM_sys_activ_variables |
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283 | |
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284 | #D- |
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285 | # ------------------------------------------------------------------ |
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286 | #D- UPDATE ParametersFiles (.def, namelist ...) with |
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287 | #D- current value of (ORCA_NIT00, ORCA_LRSTAR, RAZ_DATE, ...) |
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288 | # ------------------------------------------------------------------ |
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289 | IGCM_comp_Update |
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290 | |
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291 | #D- |
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292 | # ------------------------------------------------------------------ |
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293 | #D- Test if all was right before execution |
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294 | # ------------------------------------------------------------------ |
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295 | IGCM_debug_Verif_Exit |
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296 | |
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297 | #D- |
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298 | #D----------------------------------------------------------------== |
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299 | #D- 3. Execution |
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300 | #D----------------------------------------------------------------== |
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301 | |
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302 | echo |
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303 | echo "#######################################" |
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304 | echo "# DIR BEFORE RUN EXECUTION #" |
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305 | echo "#######################################" |
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306 | echo |
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307 | ls -lrt |
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308 | |
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309 | echo "========================================================================" |
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310 | if ( [ X${BATCH_NUM_PROC_TOT} != X ] && [ "${BATCH_NUM_PROC_TOT}" -gt 1 ] ) ; then |
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311 | MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND} |
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312 | eval MPIRUN_OPTIONS=${config_UserChoices_JobRunOptions} |
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313 | else |
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314 | MPIRUN_COMMAND=${MPIRUN_COMMAND:="time "} |
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315 | MPIRUN_OPTIONS=${MPIRUN_OPTIONS:=""} |
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316 | fi |
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317 | |
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318 | if [ ${DRYRUN} -le 1 ] ; then |
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319 | REAL_DATE_INIT=$( date ) |
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320 | echo "EXECUTION of : ${MPIRUN_COMMAND} ${MPIRUN_OPTIONS} ./${config_Executable_Name} > ${Exe_Output} 2>&1" |
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321 | typeset RET |
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322 | ${MPIRUN_COMMAND} ${MPIRUN_OPTIONS} ./${config_Executable_Name} > ${Exe_Output} 2>&1 |
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323 | RET=$? |
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324 | if [ ${RET} -gt 0 ] ; then |
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325 | echo "Return code of executable :" ${RET} |
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326 | IGCM_debug_Exit "EXECUTABLE" |
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327 | IGCM_sys_Cp ${Exe_Output} ${SUBMIT_DIR}/${PREFIX}_${Exe_Output}_error |
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328 | fi |
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329 | echo ${REAL_DATE_INIT} >> ${Exe_Output} |
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330 | date >> ${Exe_Output} |
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331 | else |
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332 | echo "EXECUTION of : ${MPIRUN_COMMAND} ${MPIRUN_OPTIONS} ./${config_Executable_Name} simulated for DRYRUN = " $DRYRUN |
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333 | echo "FOR EXECUTION DRYRUN mode = " $DRYRUN >> stack |
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334 | fi |
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335 | echo "========================================================================" |
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336 | |
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337 | echo |
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338 | echo "#######################################" |
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339 | echo "# DIR AFTER RUN EXECUTION #" |
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340 | echo "#######################################" |
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341 | echo |
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342 | ls -lrt |
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343 | |
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344 | #D- |
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345 | # ------------------------------------------------------------------ |
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346 | #D- Desactivate running environnement variables |
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347 | # ------------------------------------------------------------------ |
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348 | IGCM_sys_desactiv_variables |
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349 | |
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350 | #D- |
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351 | #D----------------------------------------------------------------== |
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352 | #D- 4. Post execution operations |
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353 | #D----------------------------------------------------------------== |
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354 | |
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355 | #D- |
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356 | # ------------------------------------------------------------------ |
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357 | #D- Save on archive machine netcdf outputs, restarts |
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358 | #D- and text files of models |
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359 | # ------------------------------------------------------------------ |
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360 | IGCM_comp_Finalize |
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361 | |
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362 | #D- |
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363 | # ------------------------------------------------------------------ |
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364 | #D- Test if all was right after Finalize |
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365 | # ------------------------------------------------------------------ |
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366 | IGCM_debug_Verif_Exit |
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367 | |
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368 | #D- |
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369 | # ------------------------------------------------------------------ |
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370 | #D- Launch post-treatment process if necessary |
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371 | # ------------------------------------------------------------------ |
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372 | IGCM_post_Initialize |
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373 | |
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374 | #D- |
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375 | # ------------------------------------------------------------------ |
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376 | #D- Save job output |
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377 | #D- Manage executable size to save only different binary |
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378 | #D- Write in run.card user, system and elapse time |
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379 | #D- Check that everything went well ! No ? then we stop. |
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380 | #D- Determine next computed period |
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381 | # ------------------------------------------------------------------ |
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382 | IGCM_config_PeriodEnd |
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383 | |
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384 | echo "Ending iteration ${Period}" |
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385 | (( Period = Period + 1 )) |
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386 | |
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387 | # End loop if date end is reached |
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388 | if [ ${SimulationLengthInDays} -ge ${ExperienceLengthInDays} ] ; then |
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389 | break ; |
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390 | fi |
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391 | |
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392 | done |
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393 | |
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394 | #D- |
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395 | #D--------------------------------------------------------------------== |
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396 | #D- 5. Submit next job or send mail if simulation over. |
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397 | #D--------------------------------------------------------------------== |
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398 | IGCM_config_Finalize |
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399 | |
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400 | date |
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