source: branches/libIGCM_CESMEP/AA_atlas_ORCA_LIM

Last change on this file was 1585, checked in by ssenesi, 12 months ago

merge branch libIGCM_CESMEP with trunk that handles RedHat8 on Irene
  • Property licence set to
    The following licence information concerns ONLY the libIGCM tools
    ==================================================================

    Copyright © Centre National de la Recherche Scientifique CNRS
    Commissariat à l'Énergie Atomique CEA

    libIGCM : Library for Portable Models Computation of IGCM Group.

    IGCM Group is the french IPSL Global Climate Model Group.

    This library is a set of shell scripts and functions whose purpose is
    the management of the initialization, the launch, the transfer of
    output files, the post-processing and the monitoring of datas produce
    by any numerical program on any plateforme.

    This software is governed by the CeCILL license under French law and
    abiding by the rules of distribution of free software. You can use,
    modify and/ or redistribute the software under the terms of the CeCILL
    license as circulated by CEA, CNRS and INRIA at the following URL
    "http://www.cecill.info".

    As a counterpart to the access to the source code and rights to copy,
    modify and redistribute granted by the license, users are provided only
    with a limited warranty and the software's author, the holder of the
    economic rights, and the successive licensors have only limited
    liability.

    In this respect, the user's attention is drawn to the risks associated
    with loading, using, modifying and/or developing or reproducing the
    software by the user in light of its specific status of free software,
    that may mean that it is complicated to manipulate, and that also
    therefore means that it is reserved for developers and experienced
    professionals having in-depth computer knowledge. Users are therefore
    encouraged to load and test the software's suitability as regards their
    requirements in conditions enabling the security of their systems and/or
    data to be ensured and, more generally, to use and operate it in the
    same conditions as regards security.

    The fact that you are presently reading this means that you have had
    knowledge of the CeCILL license and that you accept its terms.
  • Property svn:keywords set to Revision Author Date
File size: 11.3 KB
Line 
1#-Q- curie ######################
2#-Q- curie ## CURIE   TGCC/CEA ##
3#-Q- curie ######################
4#-Q- curie #MSUB -r ATL_OPA        # Nom du job
5#-Q- curie #MSUB -o ATL_OPA.out_%I
6#-Q- curie #MSUB -e ATL_OPA.out_%I
7#-Q- curie #MSUB -n 1              # Reservation du processus
8#-Q- curie #MSUB -T 7200          # Limite de temps elapsed du job
9#-Q- curie #MSUB -q ::default_node::
10#-Q- curie #MSUB -c ::default_core::
11#-Q- curie #MSUB -Q normal
12#-Q- curie #MSUB -A ::default_project::
13#-Q- curie set +x
14#-Q- irene ######################
15#-Q- irene ## IRENE   TGCC/CEA ##
16#-Q- irene ######################
17#-Q- irene #MSUB -r ATL_OPA      # Job name
18#-Q- irene #MSUB -o ATL_OPA.out_%I
19#-Q- irene #MSUB -e ATL_OPA.out_%I
20#-Q- irene #MSUB -n 1
21#-Q- irene #MSUB -T 7200         # Maximum elapsed time
22#-Q- irene #MSUB -q ::default_node::
23#-Q- irene #MSUB -c ::default_core::
24#-Q- irene #MSUB -Q normal
25#-Q- irene #MSUB -A ::default_post_project::
26#-Q- irene #MSUB -m store,work,scratch
27#-Q- irene set +x
28#-Q- irene-amd ######################
29#-Q- irene-amd ## IRENE   TGCC/CEA ##
30#-Q- irene-amd ######################
31#-Q- irene-amd #MSUB -r ATL_OPA      # Job name
32#-Q- irene-amd #MSUB -o ATL_OPA.out_%I
33#-Q- irene-amd #MSUB -e ATL_OPA.out_%I
34#-Q- irene-amd #MSUB -n 1
35#-Q- irene-amd #MSUB -T 7200         # Maximum elapsed time
36#-Q- irene-amd #MSUB -q ::default_node::
37#-Q- irene-amd #MSUB -c ::default_core::
38#-Q- irene-amd #MSUB -Q normal
39#-Q- irene-amd #MSUB -A ::default_post_project::
40#-Q- irene-amd #MSUB -m store,work,scratch
41#-Q- irene-amd set +x
42#-Q- ada #!/bin/ksh
43#-Q- ada #######################
44#-Q- ada ## ADA         IDRIS ##
45#-Q- ada #######################
46#-Q- ada # @ job_type = mpich
47#-Q- ada # @ requirements = (Feature == "prepost")
48#-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss
49#-Q- ada # @ wall_clock_limit = 2:00:00
50#-Q- ada # Nom du travail LoadLeveler
51#-Q- ada # @ job_name   = ATL_OPA
52#-Q- ada # Fichier de sortie standard du travail
53#-Q- ada # @ output     = $(job_name).$(jobid)
54#-Q- ada # Fichier de sortie d'erreur du travail
55#-Q- ada # @ error      =  $(job_name).$(jobid)
56#-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
57#-Q- ada # @ notification = error
58#-Q- ada # @ environment  = $POST_DIR ; $Script_Post_Output ; $SUBMIT_DIR ; $libIGCM ; $DEBUG_debug ; $BigBrother ; $postProcessingStopLevel ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX ; wall_clock_limit=$(wall_clock_limit)
59#-Q- ada # @ queue
60#-Q- obelix ######################
61#-Q- obelix ## OBELIX      LSCE ##
62#-Q- obelix ######################
63#-Q- obelix #PBS -N ATL_OPA
64#-Q- obelix #PBS -m a
65#-Q- obelix #PBS -j oe
66#-Q- obelix #PBS -q test
67#-Q- obelix #PBS -o ATL_OPA.$$
68#-Q- obelix #PBS -S /bin/ksh
69#-Q- ifort_CICLAD ######################
70#-Q- ifort_CICLAD ##   CICLAD    IPSL ##
71#-Q- ifort_CICLAD ######################
72#-Q- ifort_CICLAD #PBS -N ATL_OPA
73#-Q- ifort_CICLAD #PBS -m a
74#-Q- ifort_CICLAD #PBS -j oe
75#-Q- ifort_CICLAD #PBS -q std
76#-Q- ifort_CICLAD #PBS -S /bin/ksh
77#-Q- default #!/bin/ksh
78#-Q- default ##################
79#-Q- default ## DEFAULT HOST ##
80#-Q- default ##################
81
82#**************************************************************
83# Author: Sebastien Denvil
84# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
85# $Revision::                                          $ Revision of last commit
86# $Author::                                            $ Author of last commit
87# $Date::                                              $ Date of last commit
88# IPSL (2006)
89#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
90#
91#**************************************************************
92
93#set -eu
94#set -vx
95
96date
97
98#-Q- ada export OMP_NUM_THREADS=1
99
100#D- Task type DO NOT CHANGE (computing, post-processing or checking)
101TaskType=post-processing
102
103########################################################################
104
105. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
106. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
107. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
108#-------
109. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
110. ${libIGCM}/libIGCM_config/libIGCM_config.ksh
111#-------
112IGCM_sys_MkdirWork ${RUN_DIR_PATH}
113IGCM_sys_Cd ${RUN_DIR_PATH}
114#-------
115( ${DEBUG_debug} ) && IGCM_debug_Check
116( ${DEBUG_debug} ) && IGCM_card_Check
117( ${DEBUG_debug} ) && IGCM_date_Check
118
119########################################################################
120
121#set -vx
122
123# ------------------------------------------------------------------
124# Test if all was right before proceeding further
125# ------------------------------------------------------------------
126IGCM_debug_Verif_Exit
127
128if [ ${StandAlone} = true ] ; then
129    CARD_DIR=${SUBMIT_DIR}
130else
131    CARD_DIR=${RUN_DIR_PATH}
132    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
133    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
134    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
135    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
136
137fi
138
139#==================================
140# First of all
141#
142# Read libIGCM compatibility version in config.card
143# Read UserChoices section
144# Read Ensemble section
145# Read Post section
146# Define all netcdf output directories
147#==================================
148IGCM_config_CommonConfiguration ${CARD_DIR}/config.card
149
150# ------------------------------------------------------------------
151# Activate BigBrother so as to supervise this job
152# ------------------------------------------------------------------
153IGCM_debug_BigBro_Initialize
154
155#==================================
156# Then set up several directories
157#==================================
158R_ATLAS=ATLAS/SE_${YEARS}
159R_OUT_OCE=${R_SAVE}/OCE
160R_OUT_ICE=${R_SAVE}/ICE
161DIR_OUT=${DIR_OUT:=SE}
162RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCALIM_${YEARS}
163IGCM_sys_MkdirArchive ${R_FIGR}
164IGCM_sys_MkdirWork ${RUN_DIR}
165IGCM_sys_Cd ${RUN_DIR}
166
167# --------------------------------------------
168# Insert your commands between III...III lines
169# and precise produced directories to save
170# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
171
172IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc  ${RUN_DIR}
173IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc  ${RUN_DIR}
174IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc  ${RUN_DIR}
175IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc  ${RUN_DIR}
176IGCM_sys_Get ${R_OUT_ICE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc  ${RUN_DIR}
177
178
179# Which atlas configuration source are we using?
180ls ${CARD_DIR}/POST/atlas_p_${RESOL_OCE}_diag1_[abc].cfg 2>/dev/null 1>&2
181[ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST
182IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_T -l ${PATH_ATLAS}/atlas_p_${RESOL_OCE}_diag1_[abc].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
183
184
185ls ${CARD_DIR}/POST/atlas_p_${RESOL_OCE}_diag0_U.cfg 2>/dev/null 1>&2
186[ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST
187IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_U -l ${PATH_ATLAS}/atlas_p_${RESOL_OCE}_diag0_U.cfg         ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc
188
189ls ${CARD_DIR}/POST/atlas_p_${RESOL_OCE}_diag0_V.cfg 2>/dev/null 1>&2
190[ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST
191IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_V -l ${PATH_ATLAS}/atlas_p_${RESOL_OCE}_diag0_V.cfg         ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc
192
193ls ${CARD_DIR}/POST/atlas_p_${RESOL_OCE}_diag0_W.cfg 2>/dev/null 1>&2
194[ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST
195#IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_W -l ${PATH_ATLAS}/atlas_p_${RESOL_OCE}_diag0_W.cfg         ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc
196
197ls ${CARD_DIR}/POST/atlas_p_${RESOL_OCE}_diag0_[defg].cfg 2>/dev/null 1>&2
198[ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST
199IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/OCE   -l ${PATH_ATLAS}/atlas_p_${RESOL_OCE}_diag0_[defg].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
200
201ls ${CARD_DIR}/POST/atlas_p_${RESOL_OCE}LIM_diag0_[abc].cfg 2>/dev/null 1>&2
202[ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST
203IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/ICE   -l ${PATH_ATLAS}/atlas_p_${RESOL_OCE}LIM_diag0_[abc].cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc
204
205# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
206
207# Put ferret journal files together
208for file in $( ls ${R_ATLAS}/OCE_T/*/*jnl ) ; do
209  echo -e "\n\n################################" ;
210  echo -e "$file\n" ; cat $file ;
211done  > ${R_ATLAS}/OCE_T/allferretscript.txt
212
213for file in $( ls ${R_ATLAS}/OCE_U/*/*jnl ) ; do
214  echo -e "\n\n################################" ;
215  echo -e "$file\n" ; cat $file ;
216done  > ${R_ATLAS}/OCE_U/allferretscript.txt
217
218for file in $( ls ${R_ATLAS}/OCE_V/*/*jnl ) ; do
219  echo -e "\n\n################################" ;
220  echo -e "$file\n" ; cat $file ;
221done  > ${R_ATLAS}/OCE_V/allferretscript.txt
222
223for file in $( ls ${R_ATLAS}/OCE/*/*jnl ) ; do
224  echo -e "\n\n################################" ;
225  echo -e "$file\n" ; cat $file ;
226done  > ${R_ATLAS}/OCE/allferretscript.txt
227
228for file in $( ls ${R_ATLAS}/ICE/*/*jnl ) ; do
229  echo -e "\n\n################################" ;
230  echo -e "$file\n" ; cat $file ;
231done  > ${R_ATLAS}/ICE/allferretscript.txt
232
233# WHILE WAITING FOR A MORE GENERIC SOLUTION
234if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
235  IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc  ${RUN_DIR} ;
236  atlas -o ${RUN_DIR}/${R_ATLAS}/ZNL   -d -l ${FER_ATLAS}/atlas_l_${RESOL_OCE}_znl.cfg         ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ;
237  for file in $( ls ${R_ATLAS}/ZNL/*/*jnl ) ; do
238    echo -e "\n\n################################" ;
239    echo -e "$file\n" ; cat $file ;
240  done > ${R_ATLAS}/ZNL/allferretscript.txt
241fi
242
243# Clear some files
244find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
245
246# Save files
247IGCM_sys_Put_Dir ATLAS ${R_FIGR}
248IGCM_sys_Rm -Rf ATLAS
249IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_[TUVW].nc
250IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc
251# WHILE WAITING FOR A MORE GENERIC SOLUTION
252if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
253  IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ;
254fi
255
256# DODS copy
257if [ X${config_Post_DodsCopy} = XTRUE ]  ; then
258  IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS}
259  [ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
260fi
261
262# Clean RUN_DIR_PATH (necessary for cesium and titane only)
263IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
264
265# ------------------------------------------------------------------
266# Finalize BigBrother to inform that the jobs end
267# ------------------------------------------------------------------
268IGCM_debug_BigBro_Finalize
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