[1585] | 1 | #!/bin/ksh |
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| 2 | #************************************************************** |
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| 3 | # Author: Martial Mancip |
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| 4 | # Contact: Martial.Mancip__at__ipsl.jussieu.fr |
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| 5 | # $Revision:: 1575 $ Revision of last commit |
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| 6 | # $Author:: jgipsl $ Author of last commit |
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| 7 | # $Date:: 2023-02-16 11:56:52 +0100 (Thu, 16 Feb 2023) $ Date of last commit |
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| 8 | # IPSL (2006) |
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| 9 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 10 | # |
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| 11 | #************************************************************** |
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| 12 | # ID of your genci project. Curie only : post-processing jobs need it to run properly |
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| 13 | #-Q- curie export BRIDGE_MSUB_PROJECT=::default_project:: |
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| 14 | #-Q- irene export BRIDGE_MSUB_PROJECT=::default_project:: |
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| 15 | #-Q- irene-amd export BRIDGE_MSUB_PROJECT=::default_project:: |
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| 16 | |
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| 17 | #set -eu |
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| 18 | #set -vx |
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| 19 | |
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| 20 | libIGCM=::modipsl::/libIGCM |
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| 21 | |
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| 22 | #D- Task type DO NOT CHANGE (computing, post-processing or checking) |
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| 23 | TaskType=post-processing |
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| 24 | |
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| 25 | #D--------------------------------------------------------------------== |
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| 26 | #D- -1. User modification place |
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| 27 | #D--------------------------------------------------------------------== |
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| 28 | |
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| 29 | #D- Increased verbosity (1, 2, 3) |
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| 30 | Verbosity=3 |
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| 31 | |
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| 32 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 33 | #D- Default=true |
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| 34 | DEBUG_debug=false |
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| 35 | |
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| 36 | #D--------------------------------------------------------------------== |
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| 37 | echo "" |
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| 38 | echo "clean_or_continue.job " |
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| 39 | if [ $# -gt 0 ] ; then |
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| 40 | # Print help and exit |
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| 41 | echo "" |
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| 42 | echo "The script is called from in the your experiment directory, the so-called SUBMIT_DIR, in the following way" |
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| 43 | echo "../../../libIGCM/clean_or_continue.job -h : to print following information" |
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| 44 | echo "../../../libIGCM/clean_or_continue.job : normal execution" |
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| 45 | echo "" |
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| 46 | echo "This script can be used for 3 cases:" |
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| 47 | echo "1- The simulation crashed and you have PeriodState=Fatal in run.card." |
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| 48 | echo "For this case, all output from the current PeriodLength set in run.card will be deleted. " |
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| 49 | echo "You need to answer yes to the questions." |
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| 50 | echo "" |
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| 51 | echo "2- The simulation stopped due to an exceeded time limit, PeriodState=Running in run.card". |
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| 52 | echo "As for case 1, all output from the current PeriodLength will be deleted and you should answer yes to questions". |
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| 53 | echo "" |
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| 54 | echo "3- The simulation is completed but you want to continue it, PeriodState=Completed in run.card." |
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| 55 | echo "For this case, you just need to change DateEnd in config.card and launch this script." |
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| 56 | echo "" |
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| 57 | echo "For all cases, the run.card is changed as needed and the number for the current period is set in the main Job_ for the Script_Output_ file" |
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| 58 | echo "" |
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| 59 | echo "This script needs to delete files to work correctly. Therefore you should answer yes to the questions." |
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| 60 | echo "" |
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| 61 | |
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| 62 | exit |
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| 63 | fi |
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| 64 | echo "" |
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| 65 | echo "This script needs to delete files to work correctly. Therefore you should answer yes to the questions." |
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| 66 | echo "Use ../../../libIGCM/clean_or_contine.job -h for more information" |
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| 67 | echo "" |
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| 68 | |
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| 69 | #D--------------------------------------------------------------------== |
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| 70 | |
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| 71 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 72 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 73 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 74 | #------- |
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| 75 | SUBMIT_DIR=$( pwd ) |
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| 76 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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| 77 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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| 78 | #------- |
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| 79 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 80 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 81 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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| 82 | |
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| 83 | clean_CESMEP() |
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| 84 | { |
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| 85 | IGCM_card_DefineVariableFromOption ${prefix}config.card Post Cesmep |
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| 86 | if [ ${config_Post_Cesmep} != FALSE ]; then |
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| 87 | echo -e "\033[1;32mDo you want to erase the CESMEP atlas and dedicated CliMAF cache) ?" |
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| 88 | echo -n -e " Your answer (y/n) : \033[m" |
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| 89 | read reponse |
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| 90 | case ${reponse} in |
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| 91 | oui|OUI|o|y|yes|YES) |
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| 92 | $SUBMIT_DIR/cesmep_lite/libIGCM_clean.sh |
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| 93 | ;; |
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| 94 | esac |
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| 95 | fi |
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| 96 | } |
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| 97 | |
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| 98 | #================================== |
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| 99 | # First of all |
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| 100 | # |
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| 101 | # Read libIGCM compatibility version in config.card |
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| 102 | # Read UserChoices section |
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| 103 | # Read Ensemble section |
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| 104 | # Read Post section |
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| 105 | # Define all netcdf output directories |
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| 106 | #================================== |
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| 107 | IGCM_config_CommonConfiguration ${SUBMIT_DIR}/config.card |
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| 108 | |
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| 109 | #================================== |
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| 110 | # Define default value to keep compatibility with previous card: means before changes due to TGCC |
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| 111 | if [ X${PackDefault} = Xtrue ] ; then |
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| 112 | [ X${config_Post_PackFrequency} = X ] && config_Post_PackFrequency=${config_Post_RebuildFrequency} |
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| 113 | else |
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| 114 | config_Post_PackFrequency=NONE |
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| 115 | fi |
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| 116 | |
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| 117 | #================================== |
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| 118 | # Is the pack active |
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| 119 | if ( [ ! X${config_Post_PackFrequency} = X${NULL_STR} ] && [ ! X${config_Post_PackFrequency} = XNONE ] ) ; then |
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| 120 | Pack=true |
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| 121 | fi |
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| 122 | |
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| 123 | IGCM_sys_TestDirArchive ${R_SAVE} |
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| 124 | [ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive" |
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| 125 | |
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| 126 | if [ ! -f ${SUBMIT_DIR}/run.card ]; then |
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| 127 | echo "You seem NOT to have a run.card in this directory !!" |
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| 128 | echo "This script will fail because it doesn't know what to do without run.card available." |
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| 129 | exit 1 |
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| 130 | else |
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| 131 | #===================================# |
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| 132 | # Read updated run.card # |
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| 133 | #===================================# |
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| 134 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodState |
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| 135 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodDateBegin |
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| 136 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodDateEnd |
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| 137 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration CumulPeriod |
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| 138 | |
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| 139 | # |
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| 140 | if [ X${run_Configuration_CumulPeriod} = X ] ; then |
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| 141 | echo -e "\033[1;32mCumulPeriod is empty so we want to erase run.card to start properly. Do you want that?" |
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| 142 | echo -n -e " Your answer (y/n) : \033[m" |
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| 143 | read reponse |
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| 144 | case ${reponse} in |
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| 145 | |
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| 146 | oui|OUI|o|y|yes|YES) |
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| 147 | echo "OK. Now you can submit the Job : ${SUBMIT_DIR}/Job_${config_UserChoices_JobName}." |
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| 148 | IGCM_sys_Rm ${SUBMIT_DIR}/run.card |
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| 149 | ;; |
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| 150 | non|NON|n|no|NO) |
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| 151 | echo "Nothing to do !" |
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| 152 | ;; |
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| 153 | esac |
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| 154 | clean_CESMEP |
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| 155 | exit 0 |
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| 156 | fi |
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| 157 | |
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| 158 | PeriodDateEnd=$( IGCM_date_ConvertFormatToGregorian ${run_Configuration_PeriodDateEnd} ) |
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| 159 | echo "Search files with ${PeriodDateEnd} in ${R_SAVE}" |
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| 160 | set +A ListFiles -- $( IGCM_sys_RshArchive "find ${R_SAVE} -name \"*${PeriodDateEnd}*\" " ) |
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| 161 | CountListFiles=${#ListFiles[@]} |
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| 162 | |
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| 163 | if [ X${Pack} = Xtrue ] ; then |
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| 164 | echo "Search files with ${PeriodDateEnd} in ${R_BUFR}" |
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| 165 | set +A ListFilesBuf -- $( IGCM_sys_RshMaster "find ${R_BUFR} -name \"*${PeriodDateEnd}*\" " ) |
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| 166 | CountListFilesBuf=${#ListFilesBuf[@]} |
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| 167 | else |
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| 168 | CountListFilesBuf=0 |
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| 169 | fi |
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| 170 | |
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| 171 | # If exist, erase REBUILD DIR |
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| 172 | PeriodDateBegin=$( IGCM_date_ConvertFormatToGregorian ${run_Configuration_PeriodDateBegin} ) |
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| 173 | CountRebuildDir=0 |
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| 174 | if [ X${config_Post_RebuildFrequency} != X ] ; then |
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| 175 | set +A RebuildDir -- $( find ${REBUILD_DIR} -type d -name "*${PeriodDateBegin}*" ) |
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| 176 | CountRebuildDir=${#RebuildDir[@]} |
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| 177 | fi |
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| 178 | |
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| 179 | IGCM_debug_Print 1 "Number of files to be erased : ${CountListFiles}." |
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| 180 | if ( [ ${CountListFiles} -gt 0 ] || [ ${CountListFilesBuf} -gt 0 ] ) ; then |
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| 181 | for file in ${ListFiles[@]} ; do |
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| 182 | IGCM_debug_Print 2 -e "\033[1;31m ${file}\033[m" |
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| 183 | done |
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| 184 | if [ X${Pack} = Xtrue ] ; then |
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| 185 | for file in ${ListFilesBuf[@]} ; do |
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| 186 | IGCM_debug_Print 2 -e "\033[1;31m ${file}\033[m" |
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| 187 | done |
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| 188 | fi |
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| 189 | echo -e "\033[1;32mDo you REALLY want to erase all those files ?" |
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| 190 | echo -n -e " Your answer (y/n) : \033[m" |
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| 191 | read reponse |
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| 192 | case ${reponse} in |
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| 193 | |
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| 194 | oui|OUI|o|y|yes|YES) |
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| 195 | echo "OK. It will be erased." |
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| 196 | IGCM_sys_RshArchive "find ${R_SAVE} -name \"*${PeriodDateEnd}*\" -exec rm -f '{}' \;" |
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| 197 | if [ X${Pack} = Xtrue ] ; then |
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| 198 | IGCM_sys_RshMaster "find ${R_BUFR} -name \"*${PeriodDateEnd}*\" -exec rm -f '{}' \;" |
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| 199 | fi |
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| 200 | echo "done." |
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| 201 | ;; |
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| 202 | non|NON|n|no|NO) |
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| 203 | echo "Nothing to do !" |
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| 204 | ;; |
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| 205 | esac |
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| 206 | fi |
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| 207 | |
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| 208 | if [ ${CountRebuildDir} -gt 0 ] ; then |
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| 209 | IGCM_debug_Print 1 "Number of REBUILD Dirs to be erased : ${CountRebuildDir}." |
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| 210 | for Dir in ${RebuildDir[@]} ; do |
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| 211 | IGCM_debug_Print 2 -e "\033[1;31m ${Dir}\033[m" |
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| 212 | done |
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| 213 | |
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| 214 | echo -e "\033[1;32mDo you REALLY want to erase all those Directories ?" |
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| 215 | echo -n -e " Your answer (y/n) : \033[m" |
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| 216 | read reponse |
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| 217 | case ${reponse} in |
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| 218 | |
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| 219 | oui|OUI|o|y|yes|YES) |
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| 220 | echo "OK. It will be erased." |
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| 221 | find ${REBUILD_DIR} -type d -name "*${PeriodDateBegin}*" -exec rm -Rf '{}' \; |
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| 222 | echo "done." |
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| 223 | ;; |
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| 224 | non|NON|n|no|NO) |
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| 225 | echo "Nothing to do !" |
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| 226 | ;; |
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| 227 | esac |
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| 228 | fi |
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| 229 | |
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| 230 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodState |
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| 231 | if ( [ ${run_Configuration_PeriodState} != "Running" ] && [ ${run_Configuration_PeriodState} != "OnQueue" ] && [ ${run_Configuration_PeriodState} != "Continue" ] ) ; then |
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| 232 | |
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| 233 | echo -e "\033[1;32mNOW do you want to continue the simulation (Set PeriodState=OnQueue into run.card) ?" |
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| 234 | echo -n -e " Your answer (y/n) : \033[m" |
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| 235 | read reponse |
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| 236 | case ${reponse} in |
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| 237 | |
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| 238 | oui|OUI|o|y|yes|YES) |
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| 239 | echo "OK. Now you can submit the Job : ${SUBMIT_DIR}/Job_${config_UserChoices_JobName}." |
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| 240 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "OnQueue" |
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| 241 | ;; |
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| 242 | non|NON|n|no|NO) |
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| 243 | echo "Nothing to do !" |
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| 244 | ;; |
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| 245 | esac |
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| 246 | else |
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| 247 | echo "You can submit the Job : ${SUBMIT_DIR}/Job_${config_UserChoices_JobName}." |
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| 248 | fi |
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| 249 | |
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| 250 | if [ X${run_Configuration_CumulPeriod} = X1 ] ; then |
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| 251 | echo -e "\033[1;32mCumulPeriod=1 so we want to erase run.card to start properly. Do you want that too?" |
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| 252 | echo -n -e " Your answer (y/n) : \033[m" |
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| 253 | read reponse |
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| 254 | case ${reponse} in |
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| 255 | |
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| 256 | oui|OUI|o|y|yes|YES) |
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| 257 | echo "OK. Now you can submit the Job : ${SUBMIT_DIR}/Job_${config_UserChoices_JobName}." |
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| 258 | IGCM_sys_Rm ${SUBMIT_DIR}/run.card |
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| 259 | ;; |
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| 260 | non|NON|n|no|NO) |
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| 261 | echo "Nothing to do !" |
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| 262 | ;; |
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| 263 | esac |
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| 264 | else |
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| 265 | # if not first period |
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| 266 | Script_Output_Prefix=${config_UserChoices_Script_Output_Prefix:='Script_Output'} |
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| 267 | Script_Output_Job=${Script_Output_Prefix}_${config_UserChoices_JobName} |
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| 268 | Script_Output=${Script_Output_Prefix}_${config_UserChoices_JobName}.$( printf "%06d" ${run_Configuration_CumulPeriod} ) |
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| 269 | |
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| 270 | echo -e "\033[1;32mDo you want to change the number in Script_Output? (${Script_Output} into Job) ?" |
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| 271 | echo -n -e " Your answer (y/n) : \033[m" |
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| 272 | read reponse |
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| 273 | case ${reponse} in |
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| 274 | |
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| 275 | oui|OUI|o|y|yes|YES) |
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| 276 | cp ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} ${SUBMIT_DIR}/Job_${config_UserChoices_JobName}_SAVED_$$ |
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| 277 | sed -e"s/${Script_Output_Job}.[0-9][0-9][0-9][0-9][0-9][0-9]/${Script_Output}/" ${SUBMIT_DIR}/Job_${config_UserChoices_JobName}_SAVED_$$ >${SUBMIT_DIR}/Job_${config_UserChoices_JobName} |
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| 278 | echo "Job : Job_${config_UserChoices_JobName} modified." |
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| 279 | echo "Old job saved here : Job_${config_UserChoices_JobName}_SAVED_$$" |
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| 280 | ;; |
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| 281 | non|NON|n|no|NO) |
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| 282 | echo "Nothing done in Job_${config_UserChoices_JobName} !" |
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| 283 | ;; |
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| 284 | esac |
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| 285 | |
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| 286 | fi |
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| 287 | fi |
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| 288 | exit 0 |
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