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source: branches/libIGCM_CESMEP/AA_job @ 1553

Last change on this file since 1553 was 1536, checked in by rpennel, 4 years ago
Add possibility to specify wall time with ins_job
Property licence set to The following licence information concerns ONLY the libIGCM tools ================================================================== Copyright © Centre National de la Recherche Scientifique CNRS Commissariat à l'Énergie Atomique CEA libIGCM : Library for Portable Models Computation of IGCM Group. IGCM Group is the french IPSL Global Climate Model Group. This library is a set of shell scripts and functions whose purpose is the management of the initialization, the launch, the transfer of output files, the post-processing and the monitoring of datas produce by any numerical program on any plateforme. This software is governed by the CeCILL license under French law and abiding by the rules of distribution of free software. You can use, modify and/ or redistribute the software under the terms of the CeCILL license as circulated by CEA, CNRS and INRIA at the following URL "http://www.cecill.info". As a counterpart to the access to the source code and rights to copy, modify and redistribute granted by the license, users are provided only with a limited warranty and the software's author, the holder of the economic rights, and the successive licensors have only limited liability. In this respect, the user's attention is drawn to the risks associated with loading, using, modifying and/or developing or reproducing the software by the user in light of its specific status of free software, that may mean that it is complicated to manipulate, and that also therefore means that it is reserved for developers and experienced professionals having in-depth computer knowledge. Users are therefore encouraged to load and test the software's suitability as regards their requirements in conditions enabling the security of their systems and/or data to be ensured and, more generally, to use and operate it in the same conditions as regards security. The fact that you are presently reading this means that you have had knowledge of the CeCILL license and that you accept its terms. Property svn:keywords set to `Revision Author Date`
File size: 25.3 KB

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1	#-Q- curie #!/bin/ksh
2	#-Q- curie ######################
3	#-Q- curie ## CURIE TGCC/CEA ##
4	#-Q- curie ######################
5	#-Q- curie #MSUB -r ::Jobname:: # Job Name
6	#-Q- curie #MSUB -o Script_Output_::Jobname::.000001 # standard output
7	#-Q- curie #MSUB -e Script_Output_::Jobname::.000001 # error output
8	#-Q- curie #MSUB -eo
9	#-Q- curie #MSUB -n ::JobNumProcTot:: # Number of MPI tasks (SPMD case) or cores (MPMD case)
10	#-Q- curie #MSUB -c ::openMPthreads:: # Number of openMP threads. To specify only for SMPD
11	#-Q- curie #MSUB -x # exclusive node. To specify only for MPMD together with the one below
12	#-Q- curie #MSUB -E '--cpu_bind=none'
13	#-Q- curie ##MSUB -E '--distribution cyclic'
14	#-Q- curie #MSUB -T 86400 # Wall clock limit (seconds)
15	#-Q- curie #MSUB -q standard # thin nodes
16	#-Q- curie ##MSUB -U high
17	#-Q- curie #MSUB -U medium
18	#-Q- curie ##MSUB -U low
19	#-Q- curie #MSUB -A ::default_project::
20	#-Q- curie #MSUB -E --no-requeue
21	#-Q- curie # Below specific options that can be activated
22	#-Q- curie ##MSUB -q ivybridge # Option for Airain
23	#-Q- curie
24	#-Q- curie BATCH_NUM_PROC_TOT=$BRIDGE_MSUB_NPROC
25	#-Q- curie set +x
26	#-Q- irene #!/bin/ksh
27	#-Q- irene ######################
28	#-Q- irene ## IRENE TGCC/CEA ##
29	#-Q- irene ######################
30	#-Q- irene #MSUB -r ::Jobname:: # Job Name
31	#-Q- irene #MSUB -o Script_Output_::Jobname::.000001 # standard output
32	#-Q- irene #MSUB -e Script_Output_::Jobname::.000001 # error output
33	#-Q- irene #MSUB -eo
34	#-Q- irene #MSUB -n ::JobNumProcTot:: # Number of MPI tasks (SPMD case) or cores (MPMD case)
35	#-Q- irene #MSUB -c ::openMPthreads:: # Number of openMP threads. To specify only for SMPD
36	#-Q- irene #MSUB -x # exclusive node. To specify only for MPMD together with the one below
37	#-Q- irene #MSUB -E '--cpu_bind=none'
38	#-Q- irene #MSUB -T ::WallTime:: # Wall clock limit (seconds)
39	#-Q- irene #MSUB -A ::default_project::
40	#-Q- irene #MSUB -q skylake
41	#-Q- irene #MSUB -m store,work,scratch
42	#-Q- irene
43	#-Q- irene BATCH_NUM_PROC_TOT=$BRIDGE_MSUB_NPROC
44	#-Q- irene set +x
45	#-Q- irene-amd #!/bin/ksh
46	#-Q- irene-amd ######################
47	#-Q- irene-amd ## IRENE-AMD TGCC/CEA ##
48	#-Q- irene-amd ######################
49	#-Q- irene-amd #MSUB -r ::Jobname:: # Job Name
50	#-Q- irene-amd #MSUB -o Script_Output_::Jobname::.000001 # standard output
51	#-Q- irene-amd #MSUB -e Script_Output_::Jobname::.000001 # error output
52	#-Q- irene-amd #MSUB -eo
53	#-Q- irene-amd #MSUB -n ::JobNumProcTot:: # Number of MPI tasks (SPMD case) or cores (MPMD case)
54	#-Q- irene-amd #MSUB -c ::openMPthreads:: # Number of openMP threads. To specify only for SMPD
55	#-Q- irene-amd #MSUB -x # exclusive node. To specify only for MPMD together with the one below
56	#-Q- irene-amd #MSUB -T ::WallTime:: # Wall clock limit (seconds)
57	#-Q- irene-amd #MSUB -A ::default_project::
58	#-Q- irene-amd #MSUB -q rome
59	#-Q- irene-amd #MSUB -m store,work,scratch
60	#-Q- irene-amd
61	#-Q- irene-amd BATCH_NUM_PROC_TOT=$BRIDGE_MSUB_NPROC
62	#-Q- irene-amd set +x
63	#-Q- jeanzay #!/bin/ksh
64	#-Q- jeanzay ######################
65	#-Q- jeanzay ## JEANZAY IDRIS ##
66	#-Q- jeanzay ######################
67	#-Q- jeanzay #SBATCH --job-name=::Jobname:: # Job Name
68	#-Q- jeanzay #SBATCH --output=Script_Output_::Jobname::.000001 # standard output
69	#-Q- jeanzay #SBATCH --error=Script_Output_::Jobname::.000001 # error output
70	#-Q- jeanzay #SBATCH --ntasks=::JobNumProcTot:: # Number of MPI tasks
71	#-Q- jeanzay #SBATCH --cpus-per-task=::openMPthreads:: # Number of openMP threads.
72	#-Q- jeanzay #SBATCH --hint=nomultithread # 1 processus MPI par par physical core (no hyperthreading)
73	#-Q- jeanzay #SBATCH --time=::WallTime:: # Wall clock limit (minutes)
74	#-Q- jeanzay #SBATCH --account ::default_project::@cpu
75	#-Q- jeanzay
76	#-Q- jeanzay ##BATCH_NUM_PROC_TOT=$BRIDGE_SBATCH_NPROC
77	#-Q- jeanzay set +x
78	#-Q- ada #!/bin/ksh
79	#-Q- ada # ######################
80	#-Q- ada # ## ADA IDRIS ##
81	#-Q- ada # ######################
82	#-Q- ada # Job name
83	#-Q- ada # @ job_name = ::Jobname::
84	#-Q- ada # Standard output file name
85	#-Q- ada # @ output = Script_Output_::Jobname::.000001
86	#-Q- ada # Error output file name
87	#-Q- ada # @ error = Script_Output_::Jobname::.000001
88	#-Q- ada # Job type
89	#-Q- ada # @ job_type = parallel
90	#-Q- ada # Total number of tasks
91	#-Q- ada # @ total_tasks = ::JobNumProcTot::
92	#-Q- ada # Specific option for OpenMP parallelization: Number of OpenMP threads per MPI task
93	#-Q- ada # @ parallel_threads = ::openMPthreads::
94	#-Q- ada # Memory : as_limit=3.5gb max per process per core. With 4 threads per process use max as_limit=14gb
95	#-Q- ada # @ as_limit = 3.5gb
96	#-Q- ada # Maximum CPU time per task hh:mm:ss
97	#-Q- ada # @ wall_clock_limit = 1:00:00
98	#-Q- ada # @ environment = "BATCH_NUM_PROC_TOT=::JobNumProcTot::" ; wall_clock_limit=$(wall_clock_limit)
99	#-Q- ada # End of the header options
100	#-Q- ada # @ queue
101	#-Q- lxiv8 ######################
102	#-Q- lxiv8 ## OBELIX LSCE ##
103	#-Q- lxiv8 ######################
104	#-Q- lxiv8 #PBS -N ::Jobname::
105	#-Q- lxiv8 #PBS -m a
106	#-Q- lxiv8 #PBS -j oe
107	#-Q- lxiv8 #PBS -q mediump
108	#-Q- lxiv8 #PBS -o Script_Output_::Jobname::.000001
109	#-Q- lxiv8 #PBS -S /bin/ksh
110	#-Q- lxiv8 #PBS -v BATCH_NUM_PROC_TOT=::JobNumProcTot::
111	#-Q- lxiv8 #PBS -l nodes=1:ppn=::JobNumProcTot::
112	#-Q- ifort_CICLAD ######################
113	#-Q- ifort_CICLAD ## CICLAD IPSL ##
114	#-Q- ifort_CICLAD ######################
115	#-Q- ifort_CICLAD #PBS -N ::Jobname::
116	#-Q- ifort_CICLAD #PBS -m a
117	#-Q- ifort_CICLAD #PBS -j oe
118	#-Q- ifort_CICLAD ###PBS -q h12 # Queue for 12 hours at ciclad only
119	#-Q- ifort_CICLAD #PBS -o Script_Output_::Jobname::.000001
120	#-Q- ifort_CICLAD #PBS -S /bin/ksh
121	#-Q- ifort_CICLAD #PBS -v BATCH_NUM_PROC_TOT=::JobNumProcTot::
122	#-Q- ifort_CICLAD #PBS -l nodes=1:ppn=::JobNumProcTot::
123	#-Q- ifort_CICLAD #PBS -l mem=6gb
124	#-Q- ifort_CICLAD #PBS -l vmem=30gb
125	#-Q- default #!/bin/ksh
126	#-Q- default ##################
127	#-Q- default ## DEFAULT HOST ##
128	#-Q- default ##################
129	#-Q- default #For MPI use, uncomment next line :
130	#-Q- default #BATCH_NUM_PROC_TOT=::JobNumProcTot::
131
132	#**************************************************************
133	# Author: Sebastien Denvil
134	# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
135	# $Revision:: $ Revision of last commit
136	# $Author:: $ Author of last commit
137	# $Date:: $ Date of last commit
138	# IPSL (2006)
139	# This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
140	#
141	#**************************************************************
142
143	#set -eu
144	#set -vx
145
146	date
147	echo
148	echo "#######################################"
149	echo "# ANOTHER GREAT SIMULATION #"
150	echo "#######################################"
151	echo
152
153	#D--------------------------------------------------------------------==
154	#D-
155	#D- Job to launch IGCM models
156	#D-
157	#D--------------------------------------------------------------------==
158	#D-
159
160	MODIPSL=::modipsl::
161	libIGCM=${MODIPSL}/libIGCM
162
163	#D--------------------------------------------------------------------==
164	#D- -1. PLACE FOR USER MODIFICATION
165	#D- - Job Verbosity
166	#D- - PeriodNb
167	#D- - Experience type : DEB(ug), DEV(elopment), RUN
168	#D--------------------------------------------------------------------==
169
170	#D- Task type DO NOT CHANGE (computing, post-processing or checking)
171	TaskType=computing
172
173	#D- Increased verbosity (1, 2, 3)
174	Verbosity=3
175
176	#D- postProcessingStopLevel (0,1,2,3)
177	#D- 3 stop the main job if any post-processing went wrong (atlas, monitoring, metrics, create_ts, create_se, rebuild or pack_*)
178	#D- 2 stop only if create_ts, create_se or pack_* failed (dont stop if atlas, monitoring or metrics failed)
179	#D- 1 stop only if pack_* failed (dont stop if atlas, monitoring, metrics, create_ts or create_se failed)
180	#D- 0 never stop the main job for post-processing that went wrong
181	postProcessingStopLevel=1
182
183	#D- Experience type : DEB(ug), DEV(elopment), RUN (default)
184	#D- DEB : set -vx mode + output files are NOT read only
185	#D- DEV : output files are NOT read only
186	#D- RUN : output files ARE read only
187	JobType=RUN
188
189	#D- Number of execution in one job
190	PeriodNb=1
191
192	#D-
193	#D- --------------------------------------------------------------------------------------------------#
194	#D- ! OPTIONNAL FEATURES /!\ USE WITH CARE ! #
195	#D- --------------------------------------------------------------------------------------------------#
196
197
198	#D- Low level debug : to perform lib test checks, stack construction and IO functions instrumentation
199	#D- Default=true
200	#D-
201	DEBUG_debug=true
202
203	#D- Messaging : all activities and call stacks will be sent to ipsl servers
204	#D- If true will imply DEBUG_debug=true
205	#D- Default=false
206	#D-
207	BigBrother=true
208
209	#D- Set DEBUG_sys to false to disable output calls of function
210	#D- true when JobType=DEB # means DEB(ug)
211	#D-
212	#DEBUG_sys=false
213
214	#D- Define running directory
215	#D- Default=${TMPDIR} ie temporary batch directory
216	#D-
217	#RUN_DIR_PATH=/workdir/or/scratchdir/of/this/machine
218
219	#D- Define submit directory
220	#D- Default= where you launch qsub (variable from scheduler)
221	#D-
222	#SUBMIT_DIR=$( pwd )
223
224	#D- Define input file root directory R_IN
225	#D- IPSL: /prodigfs/ipslfs/igcmg/IGCM
226	#D- TGCC: /ccc/work/cont003/igcmg/igcmg/IGCM
227	#D- IDRIS: /gpfswork/rech/psl/commun/IGCM
228	#D- OBELIX: /home/orchideeshare/igcmg/IGCM
229	#D- Other default: /home_local/${LOGIN}/IGCM
230
231	#D- Change below to override the default
232	#R_IN=/u/rech/por/rpor111/DATA
233
234	#D- Turn in dry run mode ? (0,1,2,3)
235	#D- Default=0
236	#D-
237	#DRYRUN=3
238	#D-# YOU HAVE TO COMPILE YOUR EXE FILES to USE DRYRUN MODE !
239	#D-# -------------------------------------------------------------------------------------
240	#D-# \| DRYRUN= \| Date computations, \| sys_Get \| Exe \| sys_Put_Out; sys_Put_Rest \|
241	#D-# \| \| Cp/Exe/param/files \| \| \| \|
242	#D-# \| \| Chmod Qsub \| \| \| \|
243	#D-# -------------------------------------------------------------------------------------
244	#D-# \| 0 \| yes \| yes \| yes \| yes \|
245	#D-# -------------------------------------------------------------------------------------
246	#D-# \| 1 \| yes \| yes \| yes \| no \|
247	#D-# -------------------------------------------------------------------------------------
248	#D-# \| 2 \| yes \| yes \| no \| no \|
249	#D-# -------------------------------------------------------------------------------------
250	#D-# \| 3 \| yes \| no \| no \| no \|
251	#D-# -------------------------------------------------------------------------------------
252
253	#D-
254	# --------------------------------------------------------------------------------------------------#
255	#D- ! END OF OPTIONNAL FEATURES /!\ DO NOT MODIFY ANYTHING BELOW UNLESS YOU KNOW WHAT YOU ARE DOING #
256	# --------------------------------------------------------------------------------------------------#
257
258	#D-
259	#D--------------------------------------------------------------------==
260	#D- 0.0 SYSTEM ENVIRONMENT
261	#D- - Define variables for Number of processors
262	#D- - Define MPI variables
263	#D- - Define batch scheduler variables
264	#D- - Source IGCM Library
265	#D- - Get RESOLution in .resol file (temporary)
266	#D--------------------------------------------------------------------==
267
268	#---------------------------------------------------------------------==
269
270	. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
271	. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
272	. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
273	#-------
274	. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
275	. ${libIGCM}/libIGCM_config/libIGCM_config.ksh
276	. ${libIGCM}/libIGCM_comp/libIGCM_comp.ksh
277	. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
278	#-------
279	( ${DEBUG_debug} ) && IGCM_debug_Check
280	( ${DEBUG_debug} ) && IGCM_card_Check
281	( ${DEBUG_debug} ) && IGCM_date_Check
282
283	#--------------------------------------------------------------------==
284
285	#-- Resolution FLAG for oasis input
286	#RESOL="ORCA2xLMD9671"
287	[ -f ${SUBMIT_DIR}/../.resol ] && RESOL=$(head -1 ${SUBMIT_DIR}/../.resol)
288	#-- Chemistrie FLAG to ease chemistries configurations management
289	#CHEM="AER"
290	[ -f ${SUBMIT_DIR}/../.chimie ] && eval $(grep CHEM ${SUBMIT_DIR}/../.chimie)
291
292	#D-
293	#D--------------------------------------------------------------------==
294	#D- 0.1 COMMON ENVIRONMENT
295	#D- - Read libIGCM compatibility version in config.card
296	#D- - Read UserChoices section
297	#D- - Read Ensemble section
298	#D- - Read Post section
299	#D- - Define all netcdf output directories
300	#D--------------------------------------------------------------------==
301	IGCM_config_CommonConfiguration ${SUBMIT_DIR}/config.card
302
303	if [ ! -r ${SUBMIT_DIR}/run.card ] ; then
304	#================================================#
305	# The file run.card doesn't exist #
306	#================================================#
307	FirstInitialize=true
308	#copy initial run.card
309	IGCM_sys_Cp ${SUBMIT_DIR}/run.card.init ${SUBMIT_DIR}/run.card
310	IGCM_debug_Print 2 "run.card copied from run.card.init"
311	else
312	FirstInitialize=false
313	IGCM_debug_Print 2 "run.card exists"
314	fi
315
316	# ------------------------------------------------------------------
317	# Activate BigBrother so as to supervise this simulation
318	# ------------------------------------------------------------------
319	IGCM_debug_BigBro_Initialize
320
321	#D-
322	#D--------------------------------------------------------------------==
323	#D- 1. INITIALIZE CONFIGURATION
324	#D- - Simulation configuration
325	#D- - Simulation parameters
326	#D- - Execution parameter
327	#D- - Define input files directory
328	#D- - Read or initialize CumulPeriod
329	#D- - run.card
330	#D--------------------------------------------------------------------==
331	IGCM_config_Initialize
332
333	# --------------------------------------------------------------------==
334	# Define, create and cd RUN_DIR
335	# --------------------------------------------------------------------==
336	RUN_DIR=${RUN_DIR_PATH}/${config_UserChoices_JobName}.${$}
337	IGCM_sys_MkdirWork ${RUN_DIR}
338	IGCM_sys_Cd ${RUN_DIR}
339
340	# ------------------------------------------------------------------
341	# Test if all was right before proceeding further
342	# ------------------------------------------------------------------
343	IGCM_debug_Verif_Exit
344
345	#D-
346	#D---------------------------------------------------------------------==
347	#D- 2. INITIALIZE ALL COMPONENT OF THE CONFIGURATION
348	#D- - Define component executable
349	#D- - Define Write Frequency by component "1M" "1D" ...
350	#D- - Source ${comp}.driver
351	#D- - Define Storage Places by component
352	#D- - ${comp}_Initialize :
353	#D- - Patterns to sed
354	#D- - Variables from namelist
355	#D---------------------------------------------------------------------==
356	IGCM_comp_Initialize
357
358	#D-
359	#D---------------------------------------------------------------------==
360	#D- 3. PERFORM GENERAL VERIFICATION
361	#D- - Verify compatibility of period length, write frequencies, ...
362	#D- - Verify compatibility of rebuild choices and post-process choices
363	#D- - Will stop here if something is wrong
364	#D---------------------------------------------------------------------==
365	IGCM_config_Check
366
367	# ------------------------------------------------------------------
368	# Test if all was right before entering the period loop
369	# ------------------------------------------------------------------
370	IGCM_debug_Verif_Exit
371
372	#D-
373	#D---------------------------------------------------------------------==
374	#D- 4. ENTER THE DEEP EXECUTION LOOP
375	#D- ! FASTEN YOUR SEAT BELTS PLEASE. !
376	#D- ! WE WILL CROSS TURBULENCES. !
377	#D---------------------------------------------------------------------==
378
379	Period=1
380
381	PeriodContinue=false
382	if [ ${Period} -le ${PeriodNb} ]; then
383	PeriodContinue=true
384	fi
385	while ( ${PeriodContinue} ) ; do
386
387	echo
388	echo "Starting iteration ${Period} / ${PeriodNb}"
389
390	#D-
391	# ------------------------------------------------------------------
392	#D- 4.1 COMPUTE AND DEFINE DATE INFORMATION.
393	#D- - ${PeriodDateBegin}
394	#D- - ${PeriodDateEnd}
395	#D- - ${CumulPeriod}
396	#D- - ${DatesPeriod}=${PeriodDateBegin}_${PeriodDateEnd}
397	#D- - ${PeriodLength} => JOURS=31 , 28, 29, 30 ; MOIS=0 ; ANS=0
398	#D- - update run.card value
399	# ------------------------------------------------------------------
400	IGCM_config_PeriodStart
401
402	#D-
403	# ------------------------------------------------------------------
404	#D- 4.2 BEGIN COMPUTATION ONLY IF NEEDED
405	# ------------------------------------------------------------------
406	if [ ${SimulationLengthInDays} -gt ${ExperienceLengthInDays} ] ; then
407	IGCM_debug_Print 1 "break because '\${SimulationLengthInDays} -gt \${ExperienceLengthInDays}' : ${SimulationLengthInDays} -gt ${ExperienceLengthInDays}"
408	break ;
409	fi
410
411	#D-
412	# ------------------------------------------------------------------
413	#D- 4.3 CALL OPTIONNAL FUNCTION WITHIN DRIVER
414	#D- - to set special variables used in lists (Param, Init or Bc).
415	# ------------------------------------------------------------------
416	IGCM_comp_PeriodStart
417
418	#D-
419	# ------------------------------------------------------------------
420	#D- 4.4 GET PARAMETERS TEXT FILES UPDATED BY JOB
421	#D- - (.def, namelist ...)
422	#D- - READ AND USE BY GCM AT EACH EXECUTION.
423	# ------------------------------------------------------------------
424	IGCM_comp_GetInputParametersFiles
425
426	#D-
427	# ------------------------------------------------------------------
428	#D- 4.5 GET INITIAL STATE
429	#D- - (Etat0, carteveg,relief...)
430	#D- - NECESSARY ONLY IF CumulPeriod= (=> NUMERO) == 1
431	#D- - AND ???_Restart=NO
432	#D- - READ AND USE BY GCM FOR ONLY ONE EXECUTION.
433	# ------------------------------------------------------------------
434	IGCM_comp_GetInputInitialStateFiles
435
436	#D-
437	# ------------------------------------------------------------------
438	#D- 4.6 GET BOUNDARIES CONDITIONS
439	#D- - (SST, WIND[X,Y,Z], LAI ...)
440	#D- - READ AND USE BY GCM AT EACH EXECUTION.
441	# ------------------------------------------------------------------
442	IGCM_comp_GetInputBoundaryFiles
443
444	#D-
445	# ------------------------------------------------------------------
446	#D- 4.7 GET SmoothFiles CONDITIONS
447	#D- - (SST, WIND[X,Y,Z], LAI ...)
448	#D- - READ AND USE BY GCM AT EACH EXECUTION
449	#D- - Do not change at each ${Period}
450	# ------------------------------------------------------------------
451	IGCM_comp_GetInputSmoothFiles
452
453	#D-
454	# ------------------------------------------------------------------
455	#D- 4.8 GET RESTART FILES
456	#D- - (restartphy.nc, orca_restart.nc ...)
457	#D- - READ AND USE BY GCM AT EACH EXECUTION.
458	#D-
459	#D- - IF A COMPONENT DO NOT RESTART FROM PREVIOULSY COMPUTED RESTART
460	#D- - ONLY IF CumulPeriod= (=> NUMERO) == 1
461	#D- - MUST EXECUTE CREATE ETAT0_LIMIT (TYPICALLY LMDZ AND ./create_etat0_limit.e)
462	#D-
463	#D- - IF CumulPeriod == 1
464	#D- - AND A COMPONENT RESTART FROM PREVIOULSY COMPUTED RESTART
465	#D- - MUST BRING THIS RESTART IN ${RUN_DIR_PATH}
466	#D-
467	#D- - ELSE BRING RESTART FROM ${JobName} IN ${RUN_DIR_PATH}
468	# ------------------------------------------------------------------
469	IGCM_comp_GetInputRestartFiles
470
471	# ------------------------------------------------------------------
472	#D- 4.9 GET BINARY FILES
473	#D- - USED BY AT EACH EXECUTION.
474	#D- - CHECK BINARIES HAS BEEN COMPILED WITH THE SAME COMPILER
475	#D- - RELOAD THE APPROPRIATE ENVIRONMENT THE FIRST TIME IF NEEDED
476	# ------------------------------------------------------------------
477	IGCM_comp_GetInputBinaryFiles
478
479	# ------------------------------------------------------------------
480	# Test if all was right before Update
481	# ------------------------------------------------------------------
482	IGCM_debug_Verif_Exit
483
484	#D-
485	# ------------------------------------------------------------------
486	#D- 4.10 ACTIVATE RUNNING ENVIRONNEMENT VARIABLES
487	#D- - including module load associated to compiler & tools
488	#D- - .env_intel17.0.2_curie
489	#D- - .env_netcdf4.3.3.1_curie
490	# ------------------------------------------------------------------
491	IGCM_sys_activ_variables
492
493	#D-
494	# ------------------------------------------------------------------
495	#D- 4.11 UPDATE ParametersFiles
496	#D- - (.def, namelist ...)
497	#D- - with current value of (ORCA_NIT00, ORCA_LRSTAR, RAZ_DATE, ...)
498	# ------------------------------------------------------------------
499	IGCM_comp_Update
500
501	# ------------------------------------------------------------------
502	# Test if all was right before execution
503	# ------------------------------------------------------------------
504	IGCM_debug_Verif_Exit
505
506	#-Q- jeanzay # Workaround at Jean-Zay
507	#-Q- jeanzay source $I_MPI_ROOT/intel64/bin/mpivars.sh release_mt
508
509	#D-
510	#D---------------------------------------------------------------------==
511	#D- 5. EXECUTION
512	#D---------------------------------------------------------------------==
513
514	echo
515	echo "#######################################"
516	echo "# DIR BEFORE RUN EXECUTION #"
517	echo "#######################################"
518	echo
519	ls -lrt
520
521	echo "========================================================================"
522	if [ ${DRYRUN} -le 1 ] ; then
523	REAL_DATE_INIT=$( date )
524	echo > ${Exe_Output}
525	echo "#######################################" >> ${Exe_Output}
526	echo "EXECUTION of : ${EXECUTION}"
527	echo "EXECUTION of : ${EXECUTION}" >> ${Exe_Output}
528	echo >> ${Exe_Output}
529	typeset RET
530	RUN_DATE_BEGIN=$( date '+%Y-%m-%dT%H:%M:%S' )
531	${EXECUTION} >> ${Exe_Output} 2>&1
532	RET=$?
533	RUN_DATE_END=$( date '+%Y-%m-%dT%H:%M:%S' )
534	if [ ${RET} -gt 0 ] ; then
535	echo "Return code of executable :" ${RET}
536	IGCM_debug_Exit "EXECUTABLE"
537	IGCM_sys_Mkdir ${SUBMIT_DIR}/Debug
538	IGCM_sys_Cp ${Exe_Output} ${SUBMIT_DIR}/Debug/${PREFIX}_${Exe_Output}_error
539	ExecutionFail=true
540	fi
541	echo >> ${Exe_Output}
542	echo "#######################################" >> ${Exe_Output}
543	echo "libIGCM RunDateBegin=${RUN_DATE_BEGIN}" >> ${Exe_Output}
544	echo "libIGCM RunDateEnd=${RUN_DATE_END}" >> ${Exe_Output}
545	echo >> ${Exe_Output}
546	else
547	echo "EXECUTION of : ${EXECUTION} simulated for DRYRUN = " $DRYRUN
548	echo "EXECUTION of : ${EXECUTION} simulated for DRYRUN = " $DRYRUN > ${Exe_Output}
549	if ( $DEBUG_debug ) ; then
550	echo "FOR EXECUTION DRYRUN mode = " $DRYRUN >> stack
551	fi
552	fi
553	echo "========================================================================"
554
555	echo
556	echo "#######################################"
557	echo "# DIR AFTER RUN EXECUTION #"
558	echo "#######################################"
559	echo
560	ls -lrt
561
562	#D-
563	#D---------------------------------------------------------------------==
564	#D- 6. POST EXECUTION OPERATIONS
565	#D---------------------------------------------------------------------==
566
567	#D-
568	# ------------------------------------------------------------------
569	#D- 6.1. DESACTIVATE RUNNING ENVIRONNEMENT VARIABLES
570	# ------------------------------------------------------------------
571	IGCM_sys_desactiv_variables
572
573	#D-
574	# ------------------------------------------------------------------
575	#D- 6.2. SAVE OUTPUTS
576	#D- - On archive/storage machine
577	#D- - netcdf outputs, restarts and text files of models
578	# ------------------------------------------------------------------
579	IGCM_comp_Finalize
580
581	# ------------------------------------------------------------------
582	# Test if all was right after Finalize
583	# ------------------------------------------------------------------
584	IGCM_debug_Verif_Exit
585
586	#D-
587	# ------------------------------------------------------------------
588	#D- 6.3. CONFIGURE POST-PROCESSING
589	#D- - asynchronous post-treatment (Level 0) when necessary (rebuild/pack)
590	#D- - classic post-treatment (Level 1) when necessary (TimeSeries/Seasonal)
591	# ------------------------------------------------------------------
592	IGCM_post_Configure
593
594	#D-
595	# ------------------------------------------------------------------
596	#D- 6.4. SUBMIT POST-PROCESSING
597	#D- - remote rebuild or/and post-treatment process if necessary
598	# ------------------------------------------------------------------
599	IGCM_post_Submit
600
601	#D-
602	# ------------------------------------------------------------------
603	#D- 6.5. FINALYZE CURRENT LOOP AND PREPARE NEXT ONE
604	#D- - Manage executable size to save only different binary
605	#D- - Write in run.card user, system and elapse time
606	#D- - Check that everything went well ! No ? then we stop.
607	#D- - Determine next computed period
608	# ------------------------------------------------------------------
609	IGCM_config_PeriodEnd
610
611	echo "Ending iteration ${Period}"
612	(( Period = Period + 1 ))
613
614	# End loop if date end is reached
615	if [ ${SimulationLengthInDays} -ge ${ExperienceLengthInDays} ] ; then
616	break ;
617	fi
618
619	PeriodContinue=false
620	if [ ${Period} -le ${PeriodNb} ]; then
621	PeriodContinue=true
622	fi
623	done
624
625	#D-
626	#D---------------------------------------------------------------------==
627	#D- 7. SUBMIT NEXT JOB OR SEND MAIL IF SIMULATION IS OVER.
628	#D---------------------------------------------------------------------==
629	IGCM_config_Finalize
630
631	date

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