source: branches/libIGCM_MPI_OpenMP/AA_atlas_ORCA_LIM @ 593

Last change on this file since 593 was 592, checked in by mafoipsl, 12 years ago

Second merge of libIGCM_MPI_OpenMP branch with libIGCM trunk, revision 591.
  • Property licence set to
    The following licence information concerns ONLY the libIGCM tools
    ==================================================================

    Copyright © Centre National de la Recherche Scientifique CNRS
    Commissariat à l'Énergie Atomique CEA

    libIGCM : Library for Portable Models Computation of IGCM Group.

    IGCM Group is the french IPSL Global Climate Model Group.

    This library is a set of shell scripts and functions whose purpose is
    the management of the initialization, the launch, the transfer of
    output files, the post-processing and the monitoring of datas produce
    by any numerical program on any plateforme.

    This software is governed by the CeCILL license under French law and
    abiding by the rules of distribution of free software. You can use,
    modify and/ or redistribute the software under the terms of the CeCILL
    license as circulated by CEA, CNRS and INRIA at the following URL
    "http://www.cecill.info".

    As a counterpart to the access to the source code and rights to copy,
    modify and redistribute granted by the license, users are provided only
    with a limited warranty and the software's author, the holder of the
    economic rights, and the successive licensors have only limited
    liability.

    In this respect, the user's attention is drawn to the risks associated
    with loading, using, modifying and/or developing or reproducing the
    software by the user in light of its specific status of free software,
    that may mean that it is complicated to manipulate, and that also
    therefore means that it is reserved for developers and experienced
    professionals having in-depth computer knowledge. Users are therefore
    encouraged to load and test the software's suitability as regards their
    requirements in conditions enabling the security of their systems and/or
    data to be ensured and, more generally, to use and operate it in the
    same conditions as regards security.

    The fact that you are presently reading this means that you have had
    knowledge of the CeCILL license and that you accept its terms.
  • Property svn:keywords set to Revision Author Date
File size: 13.4 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_OPA        # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
14#-Q- curie #MSUB -r TS             # Nom du job               
15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
18#-Q- platine #!/usr/bin/ksh
19#-Q- platine ##################
20#-Q- platine ## PLATINE   CEA ##
21#-Q- platine ##################
22#-Q- platine #BSUB -J ATL_OPA           # Nom du job
23#-Q- platine #BSUB -N                   # message a la fin du job
24#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
25#-Q- platine #BSUB -W 1:00              # Limite temps
26#-Q- platine #BSUB -q post              # Passage en queue post
27#-Q- platine #BSUB -L /bin/ksh
28#-Q- sx8brodie #!/bin/ksh
29#-Q- sx8brodie #######################
30#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
31#-Q- sx8brodie #######################
32#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
33#-Q- sx8brodie # @ wall_clock_limit = 2:00:00
34#-Q- sx8brodie # Nom du travail LoadLeveler
35#-Q- sx8brodie # @ job_name   = ATL_OPA
36#-Q- sx8brodie # Fichier de sortie standard du travail       
37#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
38#-Q- sx8brodie # Fichier de sortie d'erreur du travail
39#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
40#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
41#-Q- sx8brodie # @ notification = error
42#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
43#-Q- sx8brodie # @ queue
44#-Q- aix6 #!/bin/ksh
45#-Q- aix6 #######################
46#-Q- aix6 ##   VARGAS   IDRIS  ##
47#-Q- aix6 #######################
48#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
49#-Q- aix6 # @ wall_clock_limit = 2:00:00
50#-Q- aix6 # Nom du travail LoadLeveler
51#-Q- aix6 # @ job_name   = ATL_OPA
52#-Q- aix6 # Fichier de sortie standard du travail       
53#-Q- aix6 # @ output     = $(job_name).$(jobid)
54#-Q- aix6 # Fichier de sortie d'erreur du travail
55#-Q- aix6 # @ error      =  $(job_name).$(jobid)
56#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
57#-Q- aix6 # @ notification = error
58#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
59#-Q- aix6 # @ queue
60#-Q- ulam #!/bin/ksh
61#-Q- ulam #######################
62#-Q- ulam ##   ULAM   IDRIS  ##
63#-Q- ulam #######################
64#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
65#-Q- ulam # @ wall_clock_limit = 2:00:00
66#-Q- ulam # Nom du travail LoadLeveler
67#-Q- ulam # @ job_name   = ATL_OPA
68#-Q- ulam # Fichier de sortie standard du travail       
69#-Q- ulam # @ output     = $(job_name).$(jobid)
70#-Q- ulam # Fichier de sortie d'erreur du travail
71#-Q- ulam # @ error      =  $(job_name).$(jobid)
72#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
73#-Q- ulam # @ notification = error
74#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
75#-Q- ulam # @ queue
76#-Q- sx8mercure #!/bin/ksh
77#-Q- sx8mercure ######################
78#-Q- sx8mercure ## SX8MERCURE   CEA ##
79#-Q- sx8mercure ######################
80#-Q- sx8mercure #PBS -N  ATL_OPA             # Nom du job
81#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
82#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
83#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
84#-Q- sx8mercure #PBS -l cputim_job=2:00:00   # Limite temps a 2 heures
85#-Q- sx8mercure #PBS -q scalaire
86#-Q- sx9mercure #!/bin/ksh
87#-Q- sx9mercure #########################
88#-Q- sx9mercure ## CESIUM FOR SX9  CEA ##
89#-Q- sx9mercure #########################
90#-Q- sx9mercure #MSUB -r ATL_OPA        # Nom du job               
91#-Q- sx9mercure #MSUB -N 1              # Reservation du noeud
92#-Q- sx9mercure #MSUB -n 1              # Reservation du processus
93#-Q- sx9mercure #MSUB -T 86400          # Limite de temps elapsed du job
94#-Q- sx9mercure #MSUB -E "-j o"
95#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
96#-Q- titane #!/bin/ksh
97#-Q- titane ######################
98#-Q- titane ## TITANE   CEA ##
99#-Q- titane ######################
100#-Q- titane #MSUB -r ATL_OPA        # Nom du job               
101#-Q- titane #MSUB -eo
102#-Q- titane #MSUB -n 1              # Reservation du processus
103#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
104#-Q- titane #MSUB -q mono
105#-Q- default #!/bin/ksh
106#-Q- default ##################
107#-Q- default ## DEFAULT HOST ##
108#-Q- default ##################
109
110#**************************************************************
111# Author: Sebastien Denvil
112# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
113# $Revision::                                          $ Revision of last commit
114# $Author::                                            $ Author of last commit
115# $Date::                                              $ Date of last commit
116# IPSL (2006)
117#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
118#
119#**************************************************************
120
121#set -eu
122#set -vx
123
124date
125
126#-Q- sx8brodie export OMP_NUM_THREADS=1
127#-Q- aix6 export OMP_NUM_THREADS=1
128#-Q- ulam export OMP_NUM_THREADS=1
129
130########################################################################
131
132. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
133      ( ${DEBUG_debug} ) && IGCM_debug_Check
134. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
135     ( ${DEBUG_debug} ) && IGCM_card_Check
136. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
137     ( ${DEBUG_debug} ) && IGCM_date_Check
138#-------
139. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
140
141########################################################################
142
143#set -vx
144
145IGCM_sys_MkdirWork ${RUN_DIR_PATH}
146IGCM_sys_Cd ${RUN_DIR_PATH}
147
148# ------------------------------------------------------------------
149# Test if all was right before proceeding further
150# ------------------------------------------------------------------
151IGCM_debug_Verif_Exit_Post
152
153if [ ${StandAlone} = true ] ; then
154    CARD_DIR=${SUBMIT_DIR}
155else
156    CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} )
157    IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH}
158fi
159#
160# First of all
161#
162IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card UserChoices
163typeset option
164for option in ${config_UserChoices[*]} ; do
165    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
166done
167#
168echo
169IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
170IGCM_debug_PrintVariables 3 config_UserChoices_JobName
171IGCM_debug_PrintVariables 3 config_UserChoices_LongName
172IGCM_debug_PrintVariables 3 config_UserChoices_TagName
173IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
174IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
175IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
176IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
177IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
178IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
179echo
180
181#==================================
182#R_SAVE : Job output directory
183#R_BUFR : Job output buffered directory
184if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
185    FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
186    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
187    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
188    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
189    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
190else
191    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
192    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
193    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
194    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
195fi
196#
197IGCM_sys_MkdirArchive ${R_FIGR}
198
199R_ATLAS=ATLAS/SE_${YEARS}
200R_OUT_OCE=${R_SAVE}/OCE
201R_OUT_ICE=${R_SAVE}/ICE
202DIR_OUT=${DIR_OUT:=SE}
203
204RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCALIM_${YEARS}
205IGCM_sys_MkdirWork ${RUN_DIR}
206IGCM_sys_Cd ${RUN_DIR}
207
208# --------------------------------------------
209# Insert your commands between III...III lines
210# and precise produced directories to save
211# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
212
213IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc  ${RUN_DIR}
214IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc  ${RUN_DIR}
215IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc  ${RUN_DIR}
216IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc  ${RUN_DIR}
217IGCM_sys_Get ${R_OUT_ICE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc  ${RUN_DIR}
218
219atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_T -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag1_[abc].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
220atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_U -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_U.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc
221atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_V -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_V.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc
222#atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_W -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_W.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc
223atlas -o ${RUN_DIR}/${R_ATLAS}/OCE   -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_[defg].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
224atlas -o ${RUN_DIR}/${R_ATLAS}/ICE   -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}LIM_diag0_[abc].cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc
225
226# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
227
228# Put ferret journal files together
229for file in $( ls ${R_ATLAS}/OCE_T/*/*jnl ) ; do 
230    echo -e "\n\n################################" ;
231    echo -e "$file\n" ; cat $file ;
232done  > ${R_ATLAS}/OCE_T/allferretscript.txt
233
234for file in $( ls ${R_ATLAS}/OCE_U/*/*jnl ) ; do 
235    echo -e "\n\n################################" ;
236    echo -e "$file\n" ; cat $file ;
237done  > ${R_ATLAS}/OCE_U/allferretscript.txt
238
239for file in $( ls ${R_ATLAS}/OCE_V/*/*jnl ) ; do 
240    echo -e "\n\n################################" ;
241    echo -e "$file\n" ; cat $file ;
242done  > ${R_ATLAS}/OCE_V/allferretscript.txt
243
244for file in $( ls ${R_ATLAS}/OCE/*/*jnl ) ; do 
245    echo -e "\n\n################################" ;
246    echo -e "$file\n" ; cat $file ;
247done  > ${R_ATLAS}/OCE/allferretscript.txt
248
249for file in $( ls ${R_ATLAS}/ICE/*/*jnl ) ; do 
250    echo -e "\n\n################################" ;
251    echo -e "$file\n" ; cat $file ;
252done  > ${R_ATLAS}/ICE/allferretscript.txt
253
254# WHILE WAITING FOR A MORE GENERIC SOLUTION
255if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
256    IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc  ${RUN_DIR} ;
257    atlas -o ${RUN_DIR}/${R_ATLAS}/ZNL   -d -l ${FER_ATLAS}/atlas_l_${RESOL_OCE}_znl.cfg         ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ;
258    for file in $( ls ${R_ATLAS}/ZNL/*/*jnl ) ; do
259        echo -e "\n\n################################" ;
260        echo -e "$file\n" ; cat $file ;
261    done > ${R_ATLAS}/ZNL/allferretscript.txt
262fi
263
264# Clear some files
265find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
266
267# Save files
268IGCM_sys_Put_Dir ATLAS ${R_FIGR}
269
270IGCM_sys_Rm -Rf ATLAS
271IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_[TUVW].nc
272IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc     
273# WHILE WAITING FOR A MORE GENERIC SOLUTION
274if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
275    IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ;
276fi
277
278# DODS copy
279IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS}
280[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
281
282# Clean RUN_DIR_PATH (necessary for cesium and titane only)
283IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
Note: See TracBrowser for help on using the repository browser.