source: branches/libIGCM_MPI_OpenMP/AA_atlas_ORCHIDEE

Last change on this file was 605, checked in by mafoipsl, 12 years ago

Tttttt use elapstim_req instead of cpu_time on mercure front-end.
  • Property licence set to
    The following licence information concerns ONLY the libIGCM tools
    ==================================================================

    Copyright © Centre National de la Recherche Scientifique CNRS
    Commissariat à l'Énergie Atomique CEA

    libIGCM : Library for Portable Models Computation of IGCM Group.

    IGCM Group is the french IPSL Global Climate Model Group.

    This library is a set of shell scripts and functions whose purpose is
    the management of the initialization, the launch, the transfer of
    output files, the post-processing and the monitoring of datas produce
    by any numerical program on any plateforme.

    This software is governed by the CeCILL license under French law and
    abiding by the rules of distribution of free software. You can use,
    modify and/ or redistribute the software under the terms of the CeCILL
    license as circulated by CEA, CNRS and INRIA at the following URL
    "http://www.cecill.info".

    As a counterpart to the access to the source code and rights to copy,
    modify and redistribute granted by the license, users are provided only
    with a limited warranty and the software's author, the holder of the
    economic rights, and the successive licensors have only limited
    liability.

    In this respect, the user's attention is drawn to the risks associated
    with loading, using, modifying and/or developing or reproducing the
    software by the user in light of its specific status of free software,
    that may mean that it is complicated to manipulate, and that also
    therefore means that it is reserved for developers and experienced
    professionals having in-depth computer knowledge. Users are therefore
    encouraged to load and test the software's suitability as regards their
    requirements in conditions enabling the security of their systems and/or
    data to be ensured and, more generally, to use and operate it in the
    same conditions as regards security.

    The fact that you are presently reading this means that you have had
    knowledge of the CeCILL license and that you accept its terms.
  • Property svn:keywords set to Revision Author Date
File size: 10.7 KB
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1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_ORCH       # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
14#-Q- curie #MSUB -r TS             # Nom du job               
15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
18#-Q- platine #!/usr/bin/ksh
19#-Q- platine ##################
20#-Q- platine ## PLATINE   CEA ##
21#-Q- platine ##################
22#-Q- platine #BSUB -J ATL_ORCH          # Nom du job
23#-Q- platine #BSUB -N                   # message a la fin du job
24#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
25#-Q- platine #BSUB -W 1:00              # Limite temps
26#-Q- platine #BSUB -q post              # Passage en queue post
27#-Q- platine #BSUB -L /bin/ksh
28#-Q- sx8brodie #!/bin/ksh
29#-Q- sx8brodie #######################
30#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
31#-Q- sx8brodie #######################
32#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
33#-Q- sx8brodie # @ wall_clock_limit = 1:00:00
34#-Q- sx8brodie # Nom du travail LoadLeveler
35#-Q- sx8brodie # @ job_name   = ATL_ORCH
36#-Q- sx8brodie # Fichier de sortie standard du travail       
37#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
38#-Q- sx8brodie # Fichier de sortie d'erreur du travail
39#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
40#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
41#-Q- sx8brodie # @ notification = error
42#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
43#-Q- sx8brodie # @ queue
44#-Q- aix6 #!/bin/ksh
45#-Q- aix6 #######################
46#-Q- aix6 ##   VARGAS   IDRIS  ##
47#-Q- aix6 #######################
48#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
49#-Q- aix6 # @ wall_clock_limit = 1:00:00
50#-Q- aix6 # Nom du travail LoadLeveler
51#-Q- aix6 # @ job_name   = ATL_ORCH
52#-Q- aix6 # Fichier de sortie standard du travail       
53#-Q- aix6 # @ output     = $(job_name).$(jobid)
54#-Q- aix6 # Fichier de sortie d'erreur du travail
55#-Q- aix6 # @ error      =  $(job_name).$(jobid)
56#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
57#-Q- aix6 # @ notification = error
58#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
59#-Q- aix6 # @ queue
60#-Q- ulam #!/bin/ksh
61#-Q- ulam #######################
62#-Q- ulam ##   ULAM   IDRIS  ##
63#-Q- ulam #######################
64#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
65#-Q- ulam # @ wall_clock_limit = 1:00:00
66#-Q- ulam # Nom du travail LoadLeveler
67#-Q- ulam # @ job_name   = ATL_ORCH
68#-Q- ulam # Fichier de sortie standard du travail       
69#-Q- ulam # @ output     = $(job_name).$(jobid)
70#-Q- ulam # Fichier de sortie d'erreur du travail
71#-Q- ulam # @ error      =  $(job_name).$(jobid)
72#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
73#-Q- ulam # @ notification = error
74#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
75#-Q- ulam # @ queue
76#-Q- sx8mercure #!/bin/ksh
77#-Q- sx8mercure ######################
78#-Q- sx8mercure ## SX8MERCURE   CEA ##
79#-Q- sx8mercure ######################
80#-Q- sx8mercure #PBS -N  ATL_ORCH            # Nom du job
81#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
82#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
83#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
84#-Q- sx8mercure #PBS -l cputim_job=1:00:00   # Limite temps a 2 heures
85#-Q- sx8mercure #PBS -q scalaire
86#-Q- sx9mercure #!/bin/ksh
87#-Q- sx9mercure ######################
88#-Q- sx9mercure ## SX9MERCURE  CCRT ##
89#-Q- sx9mercure ######################
90#-Q- sx9mercure #PBS -N  ATL_ORCH            # Nom du job
91#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
92#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
93#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
94#-Q- sx9mercure #PBS -l elapstim_req=1:00:00   # Limite temps a 2 heures
95#-Q- sx9mercure #PBS -q scalaire
96#-Q- titane #!/bin/ksh
97#-Q- titane ######################
98#-Q- titane ## TITANE   CEA ##
99#-Q- titane ######################
100#-Q- titane #MSUB -r ATL_ORCH       # Nom du job               
101#-Q- titane #MSUB -eo
102#-Q- titane #MSUB -n 1              # Reservation du processus
103#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
104#-Q- titane #MSUB -q mono
105#-Q- lxiv8 ######################
106#-Q- lxiv8 ## OBELIX      LSCE ##
107#-Q- lxiv8 ######################
108#-Q- lxiv8 #PBS -N ATL_ORCH
109#-Q- lxiv8 #PBS -m a
110#-Q- lxiv8 #PBS -j oe
111#-Q- lxiv8 #PBS -q medium
112#-Q- lxiv8 #PBS -o ATL_ORCH.$$
113#-Q- lxiv8 #PBS -S /bin/ksh
114#-Q- default #!/bin/ksh
115#-Q- default ##################
116#-Q- default ## DEFAULT HOST ##
117#-Q- default ##################
118
119#**************************************************************
120# Author: Martial Mancip
121# Contact: Martial.Mancip__at__ipsl.jussieu.fr
122# $Revision::                                          $ Revision of last commit
123# $Author::                                            $ Author of last commit
124# $Date::                                              $ Date of last commit
125# IPSL (2006)
126#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
127#
128#**************************************************************
129
130#set -eu
131#set -vx
132
133date
134
135#-Q- sx8brodie export OMP_NUM_THREADS=1
136#-Q- aix6 export OMP_NUM_THREADS=1
137#-Q- ulam export OMP_NUM_THREADS=1
138
139########################################################################
140
141. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
142      ( ${DEBUG_debug} ) && IGCM_debug_Check
143. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
144     ( ${DEBUG_debug} ) && IGCM_card_Check
145. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
146     ( ${DEBUG_debug} ) && IGCM_date_Check
147#-------
148. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
149
150########################################################################
151
152#set -vx
153
154IGCM_sys_MkdirWork ${RUN_DIR_PATH}
155IGCM_sys_Cd ${RUN_DIR_PATH}
156
157# ------------------------------------------------------------------
158# Test if all was right before proceeding further
159# ------------------------------------------------------------------
160IGCM_debug_Verif_Exit_Post
161
162if [ ${StandAlone} = true ] ; then
163    CARD_DIR=${SUBMIT_DIR}
164else
165    CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} )
166    IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH}
167fi
168#
169# First of all
170#
171IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card UserChoices
172typeset option
173for option in ${config_UserChoices[*]} ; do
174    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
175done
176#
177echo
178IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
179IGCM_debug_PrintVariables 3 config_UserChoices_JobName
180IGCM_debug_PrintVariables 3 config_UserChoices_LongName
181IGCM_debug_PrintVariables 3 config_UserChoices_TagName
182IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
183IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
184IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
185IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
186IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
187IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
188echo
189
190#==================================
191#R_SAVE : Job output directory
192#R_BUFR : Job output buffered directory
193if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
194    FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
195    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
196    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
197    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
198    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
199else
200    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
201    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
202    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
203    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
204fi
205#
206IGCM_sys_MkdirArchive ${R_FIGR}
207
208R_ATLAS=ATLAS/SE_${YEARS}
209R_OUT_SRF=${R_SAVE}/SRF
210DIR_OUT=${DIR_OUT:=SE}
211
212RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCHIDEE_${YEARS}
213IGCM_sys_MkdirWork ${RUN_DIR}
214IGCM_sys_Cd ${RUN_DIR}
215
216# --------------------------------------------
217# Insert your commands between III...III lines
218# and precise produced directories to save
219# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
220
221IGCM_sys_Get ${R_OUT_SRF}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc ${RUN_DIR}
222
223atlas -o ${RUN_DIR}/${R_ATLAS}/SRF -l ${FER_ATLAS}/atlas_p_ORCHIDEE_diag1_*.cfg \
224                                       ${FER_ATLAS}/atlas_p_SECHIBA_diag1_*.cfg \
225                                       ${FER_ATLAS}/atlas_p_ORCHIDEE_diag2_a.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc
226
227# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
228
229# Put ferret journal files together
230for file in $( ls ${R_ATLAS}/SRF/*/*jnl ) ; do 
231    echo -e "\n\n################################" ;
232    echo -e "$file\n" ; cat $file ;
233done  > ${R_ATLAS}/SRF/allferretscript.txt
234
235# Clear some files
236find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
237
238# Save files
239IGCM_sys_Put_Dir ATLAS ${R_FIGR}
240IGCM_sys_Rm -Rf ATLAS
241IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc
242
243# DODS copy
244IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS}
245[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
246
247# Clean RUN_DIR_PATH (necessary for cesium and titane only)
248IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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