source: branches/libIGCM_MPI_OpenMP/AA_atlas_PISCES @ 593

Last change on this file since 593 was 592, checked in by mafoipsl, 12 years ago

Second merge of libIGCM_MPI_OpenMP branch with libIGCM trunk, revision 591.
  • Property svn:keywords set to Revision Author Date
File size: 10.9 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_PIS        # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
14#-Q- curie #MSUB -r TS             # Nom du job               
15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
18#-Q- platine #!/usr/bin/ksh
19#-Q- platine ##################
20#-Q- platine ## PLATINE   CEA ##
21#-Q- platine ##################
22#-Q- platine #BSUB -J ATL_PIS           # Nom du job
23#-Q- platine #BSUB -N                   # message a la fin du job
24#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
25#-Q- platine #BSUB -W 1:00              # Limite temps
26#-Q- platine #BSUB -q post              # Passage en queue post
27#-Q- platine #BSUB -L /bin/ksh
28#-Q- sx8brodie #!/bin/ksh
29#-Q- sx8brodie #######################
30#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
31#-Q- sx8brodie #######################
32#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
33#-Q- sx8brodie # @ wall_clock_limit = 1:00:00
34#-Q- sx8brodie # Nom du travail LoadLeveler
35#-Q- sx8brodie # @ job_name   = ATL_PIS
36#-Q- sx8brodie # Fichier de sortie standard du travail       
37#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
38#-Q- sx8brodie # Fichier de sortie d'erreur du travail
39#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
40#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
41#-Q- sx8brodie # @ notification = error
42#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
43#-Q- sx8brodie # @ queue
44#-Q- aix6 #!/bin/ksh
45#-Q- aix6 #######################
46#-Q- aix6 ##   VARGAS   IDRIS  ##
47#-Q- aix6 #######################
48#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
49#-Q- aix6 # @ wall_clock_limit = 1:00:00
50#-Q- aix6 # Nom du travail LoadLeveler
51#-Q- aix6 # @ job_name   = ATL_PIS
52#-Q- aix6 # Fichier de sortie standard du travail       
53#-Q- aix6 # @ output     = $(job_name).$(jobid)
54#-Q- aix6 # Fichier de sortie d'erreur du travail
55#-Q- aix6 # @ error      =  $(job_name).$(jobid)
56#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
57#-Q- aix6 # @ notification = error
58#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
59#-Q- aix6 # @ queue
60#-Q- ulam #!/bin/ksh
61#-Q- ulam #######################
62#-Q- ulam ##   ULAM   IDRIS  ##
63#-Q- ulam #######################
64#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
65#-Q- ulam # @ wall_clock_limit = 1:00:00
66#-Q- ulam # Nom du travail LoadLeveler
67#-Q- ulam # @ job_name   = ATL_PIS
68#-Q- ulam # Fichier de sortie standard du travail       
69#-Q- ulam # @ output     = $(job_name).$(jobid)
70#-Q- ulam # Fichier de sortie d'erreur du travail
71#-Q- ulam # @ error      =  $(job_name).$(jobid)
72#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
73#-Q- ulam # @ notification = error
74#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
75#-Q- ulam # @ queue
76#-Q- sx8mercure #!/bin/ksh
77#-Q- sx8mercure ######################
78#-Q- sx8mercure ## SX8MERCURE   CEA ##
79#-Q- sx8mercure ######################
80#-Q- sx8mercure #PBS -N  ATL_PIS             # Nom du job
81#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
82#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
83#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
84#-Q- sx8mercure #PBS -l cputim_job=2:00:00   # Limite temps a 2 heures
85#-Q- sx8mercure #PBS -q scalaire
86#-Q- sx9mercure #!/bin/ksh
87#-Q- sx9mercure #########################
88#-Q- sx9mercure ## CESIUM FOR SX9  CEA ##
89#-Q- sx9mercure #########################
90#-Q- sx9mercure #MSUB -r ATL_PIS        # Nom du job               
91#-Q- sx9mercure #MSUB -N 1              # Reservation du noeud
92#-Q- sx9mercure #MSUB -n 1              # Reservation du processus
93#-Q- sx9mercure #MSUB -T 86400          # Limite de temps elapsed du job
94#-Q- sx9mercure #MSUB -E "-j o"
95#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
96#-Q- titane #!/bin/ksh
97#-Q- titane ######################
98#-Q- titane ## TITANE   CEA ##
99#-Q- titane ######################
100#-Q- titane #MSUB -r ATL_PIS        # Nom du job
101#-Q- titane #MSUB -eo
102#-Q- titane #MSUB -n 1              # Reservation du processus
103#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
104#-Q- titane #MSUB -q mono
105#-Q- default #!/bin/ksh
106#-Q- default ##################
107#-Q- default ## DEFAULT HOST ##
108#-Q- default ##################
109
110#**************************************************************
111# Author: Christian Ethe
112# Contact: Christian.Ethe__at__ipsl.jussieu.fr
113# $Revision::                                          $ Revision of last commit
114# $Author::                                            $ Author of last commit
115# $Date::                                              $ Date of last commit
116# IPSL (2006)
117#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
118#
119#**************************************************************
120
121#set -eu
122#set -vx
123
124date
125
126#-Q- sx8brodie export OMP_NUM_THREADS=1
127#-Q- aix6 export OMP_NUM_THREADS=1
128#-Q- ulam export OMP_NUM_THREADS=1
129
130########################################################################
131
132. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
133      ( ${DEBUG_debug} ) && IGCM_debug_Check
134. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
135     ( ${DEBUG_debug} ) && IGCM_card_Check
136. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
137     ( ${DEBUG_debug} ) && IGCM_date_Check
138#-------
139. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
140
141########################################################################
142
143#set -vx
144
145IGCM_sys_MkdirWork ${RUN_DIR_PATH}
146IGCM_sys_Cd ${RUN_DIR_PATH}
147
148# ------------------------------------------------------------------
149# Test if all was right before proceeding further
150# ------------------------------------------------------------------
151IGCM_debug_Verif_Exit_Post
152
153if [ ${StandAlone} = true ] ; then
154    CARD_DIR=${SUBMIT_DIR}
155else
156    CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} )
157    IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH}
158fi
159#
160# First of all
161#
162IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card UserChoices
163typeset option
164for option in ${config_UserChoices[*]} ; do
165    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
166done
167
168#
169echo
170IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
171IGCM_debug_PrintVariables 3 config_UserChoices_JobName
172IGCM_debug_PrintVariables 3 config_UserChoices_LongName
173IGCM_debug_PrintVariables 3 config_UserChoices_TagName
174IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
175IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
176IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
177IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
178IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
179IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
180echo
181
182#==================================
183#R_SAVE : Job output directory
184#R_BUFR : Job output buffered directory
185if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
186    FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
187    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
188    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
189    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
190    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
191else
192    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
193    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
194    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
195    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
196fi
197#
198IGCM_sys_MkdirArchive ${R_FIGR}
199
200R_ATLAS=ATLAS/SE_${YEARS}
201R_OUT_MBG=${R_SAVE}/MBG
202DIR_OUT=${DIR_OUT:=SE}
203
204RUN_DIR=${RUN_DIR_PATH}/ATLAS_PISCES_${YEARS}
205IGCM_sys_MkdirWork ${RUN_DIR}
206IGCM_sys_Cd ${RUN_DIR}
207
208# --------------------------------------------
209# Insert your commands between III...III lines
210# and precise produced directories to save
211# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
212
213IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc  ${RUN_DIR}
214IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc  ${RUN_DIR}
215
216atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_T -l ${FER_ATLAS}/atlas_p_PISCES_diag1_*.cfg  \
217                                        ${FER_ATLAS}/atlas_p_PISCES_diag0_a.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc
218atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_F -l ${FER_ATLAS}/atlas_p_PISCES_diag2_a.cfg  \
219                                        ${FER_ATLAS}/atlas_p_PISCES_diag0_b.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc
220
221# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
222
223# Put ferret journal files together
224for file in $( ls ${R_ATLAS}/MBG_T/*/*jnl ) ; do
225    echo -e "\n\n################################" ;
226    echo -e "$file\n" ; cat $file ;
227done  > ${R_ATLAS}/MBG_T/allferretscript.txt
228
229for file in $( ls ${R_ATLAS}/MBG_F/*/*jnl ) ; do
230    echo -e "\n\n################################" ;
231    echo -e "$file\n" ; cat $file ;
232done  > ${R_ATLAS}/MBG_F/allferretscript.txt
233# Clear some files
234find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
235
236# Save files
237IGCM_sys_Put_Dir ATLAS ${R_FIGR}
238
239IGCM_sys_Rm -Rf ATLAS
240IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc
241IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc
242
243# DODS copy
244IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS}
245[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
246
247# Clean RUN_DIR_PATH (necessary for cesium and titane only)
248IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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