source: branches/libIGCM_MPI_OpenMP/AA_rebuild_fromArchive @ 494

Last change on this file since 494 was 478, checked in by sdipsl, 13 years ago
  • ACo as we do not use TMPDIR on scalar mercure we have to clean the tmp
  • Job running on the titane mono are not killed randomly anymore by root
  • Property svn:keywords set to Revision Author Date
File size: 11.1 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r REBUILDARCH    # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- platine #!/usr/bin/ksh
12#-Q- platine ###################
13#-Q- platine ## PLATINE   CEA ##
14#-Q- platine ###################
15#-Q- platine #BSUB -J REBUILDARCH            # Nom du job
16#-Q- platine #BSUB -N                        # message a la fin du job
17#-Q- platine #BSUB -n 1                      # reservation des processeurs pour le job
18#-Q- platine #BSUB -W 4:00                   # Limite temps
19#-Q- platine #BSUB -q post                   # Passage en queue post
20#-Q- platine #BSUB -L /bin/ksh
21#-Q- sx8brodie #!/bin/ksh
22#-Q- sx8brodie #######################
23#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
24#-Q- sx8brodie #######################
25#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
26#-Q- sx8brodie # @ wall_clock_limit = 20:00:00
27#-Q- sx8brodie # Nom du travail LoadLeveler
28#-Q- sx8brodie # @ job_name   = REBUILDARCH
29#-Q- sx8brodie # Fichier de sortie standard du travail       
30#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
31#-Q- sx8brodie # Fichier de sortie d'erreur du travail
32#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
33#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
34#-Q- sx8brodie # @ notification = error
35#-Q- sx8brodie # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
36#-Q- sx8brodie # @ queue
37#-Q- aix6 #!/bin/ksh
38#-Q- aix6 #######################
39#-Q- aix6 ##   VARGAS   IDRIS  ##
40#-Q- aix6 #######################
41#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
42#-Q- aix6 # @ wall_clock_limit = 20:00:00
43#-Q- aix6 # Nom du travail LoadLeveler
44#-Q- aix6 # @ job_name   = REBUILDARCH
45#-Q- aix6 # Fichier de sortie standard du travail
46#-Q- aix6 # @ output     = $(job_name).$(jobid)
47#-Q- aix6 # Fichier de sortie d'erreur du travail
48#-Q- aix6 # @ error      =  $(job_name).$(jobid)
49#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
50#-Q- aix6 # @ notification = error
51#-Q- aix6 # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
52#-Q- aix6 # @ queue
53#-Q- ulam #!/bin/ksh
54#-Q- ulam #######################
55#-Q- ulam ##   ULAM   IDRIS  ##
56#-Q- ulam #######################
57#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
58#-Q- ulam # @ wall_clock_limit = 20:00:00
59#-Q- ulam # Nom du travail LoadLeveler
60#-Q- ulam # @ job_name   = REBUILDARCH
61#-Q- ulam # Fichier de sortie standard du travail
62#-Q- ulam # @ output     = $(job_name).$(jobid)
63#-Q- ulam # Fichier de sortie d'erreur du travail
64#-Q- ulam # @ error      =  $(job_name).$(jobid)
65#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
66#-Q- ulam # @ notification = error
67#-Q- ulam # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
68#-Q- ulam # @ queue
69#-Q- sx8mercure #!/bin/ksh
70#-Q- sx8mercure ######################
71#-Q- sx8mercure ## SX8MERCURE   CEA ##
72#-Q- sx8mercure ######################
73#-Q- sx8mercure #PBS -N REBUILDARCH          # Nom du job
74#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
75#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
76#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
77#-Q- sx8mercure #PBS -l cputim_job=24:00:00  # Limite temps a 1 heures
78#-Q- sx8mercure #PBS -q scalaire
79#-Q- sx9mercure #!/bin/ksh
80#-Q- sx9mercure ######################
81#-Q- sx9mercure ## CESIUM FOR SX9  CEA ##
82#-Q- sx9mercure ######################
83#-Q- sx9mercure #MSUB -r REBUILDARCH    # Nom du job               
84#-Q- sx9mercure #MSUB -N 1              # Reservation du noeud
85#-Q- sx9mercure #MSUB -n 1              # Reservation du processus
86#-Q- sx9mercure #MSUB -T 86400          # Limite de temps elapsed du job
87#-Q- sx9mercure #MSUB -E "-j o"
88#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
89#-Q- titane #!/bin/ksh
90#-Q- titane ######################
91#-Q- titane ## TITANE   CEA     ##
92#-Q- titane ######################
93#-Q- titane #MSUB -r REBUILDARCH     # Nom du job               
94#-Q- titane #MSUB -eo
95#-Q- titane #MSUB -n 1               # Reservation du processus
96#-Q- titane #MSUB -T 86400           # Limite de temps elapsed du job
97#-Q- titane #MSUB -p gen2211
98#-Q- titane #MSUB -q mono
99#-Q- lxiv8 ######################
100#-Q- lxiv8 ## OBELIX      LSCE ##
101#-Q- lxiv8 ######################
102#-Q- lxiv8 #PBS -N REBUILDARCH
103#-Q- lxiv8 #PBS -m a
104#-Q- lxiv8 #PBS -j oe
105#-Q- lxiv8 #PBS -q medium
106#-Q- lxiv8 #PBS -o REBUILDARCH.$$
107#-Q- lxiv8 #PBS -S /bin/ksh
108#-Q- default #!/bin/ksh
109#-Q- default ##################
110#-Q- default ## DEFAULT HOST ##
111#-Q- default ##################
112
113#**************************************************************
114# Author: Sebastien Denvil
115# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
116# $Revision::                                          $ Revision of last commit
117# $Author::                                            $ Author of last commit
118# $Date::                                              $ Date of last commit
119# IPSL (2006)
120#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
121#
122#**************************************************************
123
124#set -eu
125#set -vx
126
127date
128
129#-Q- sx8brodie export OMP_NUM_THREADS=1
130#-Q- aix6 export OMP_NUM_THREADS=1
131#-Q- ulam export OMP_NUM_THREADS=1
132
133########################################################################
134
135#D- Flag to determine if this job in a standalone mode
136#D- Default : value from AA_job if any
137StandAlone=${StandAlone:=true}
138
139#D- Low level debug : to bypass lib test checks and stack construction
140#D- Default : value from AA_job if any
141libIGCM=${libIGCM:=::modipsl::/libIGCM}
142# WARNING for StandAlone used : To run this script on some machine,
143# you must check MirrorlibIGCM variable in sys library.
144# If this variable is true, you must use libIGCM_POST path instead
145# of your running libIGCM directory.
146
147#-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer.
148MASTER=${MASTER:=mercure|titane|brodie|vargas}
149
150#D- Do we rebuild parallel output from archive or from ${BIGDIR}
151#D- Default : value from AA_job if any
152RebuildFromArchive=${RebuildFromArchive:=true}
153
154#D- Directory where files we need to rebuild are store
155#D- Default : value from AA_job if any
156#D- if RebuildFromArchive=true REBUILD_DIR=${DMFDIR}/IGCM_OUT/.../JobName/TMP
157#D- example : /dmnfs09/cont003/p86denv/IGCM_OUT/IPSLCM5/CM5PIRC7/TMP
158#D- if RebuildFromArchive=false REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/
159#D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW
160REBUILD_DIR=${REBUILD_DIR:=/path/to/your/TMP/REBUILD/FILES}
161
162#D- How many directory to rebuild we have to consider
163#D- Default : value from AA_job if any
164NbRebuildDir=${NbRebuildDir:=1000}
165
166#D- Suffix date we will use to determine which directory to rebuild
167#D- We will rebuild NbRebuildDir before and including PeriodDateBegin
168#D- Default : value from AA_job if any
169LastPeriodForRebuild=${LastPeriodForRebuild:=${PeriodDateBegin:=18901201}}
170
171#D- Flag to determine atlas job's output directory
172#D- Default : value from libIGCM_post.ksh if any
173POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}}
174
175#-D- libIGCM_SX contains libIGCM on Master computer. Required on some center. Always OK.
176libIGCM_SX=${libIGCM_SX:=::modipsl::/libIGCM}
177
178#D- Increased verbosity (1, 2, 3)
179#D- Default : value from AA_job if any
180Verbosity=${Verbosity:=3}
181
182#D- Low level debug : to bypass lib test checks and stack construction
183#D- Default : value from AA_job if any
184DEBUG_debug=${DEBUG_debug:=false}
185
186#D- TEMPORARY Flag to determine atmospheric resolution
187#D- Default : value from atmospheric driver if any
188RESOL_ATM=${RESOL_ATM:=ALL}
189
190#D- TEMPORARY Flag to determine ocean resolution
191#D- Default : value from ocean driver if any
192RESOL_OCE=${RESOL_OCE:=ORCA2}
193
194#D- TEMPORARY Flag to determine ice resolution
195#D- Default : value from ice driver if any
196RESOL_ICE=${RESOL_ICE:=ORCA2}
197
198#D- TEMPORARY Flag to determine biogeochemistry resolution
199#D- Default : value from ice driver if any
200RESOL_MBG=${RESOL_MBG:=ORCA2}
201
202#D- Flag to determine surface resolution
203#D- Default : value from surface driver if any
204RESOL_SRF=ALL
205
206#D- Flag to determine surface resolution
207#D- Default : value from surface driver if any
208RESOL_SBG=ALL
209
210########################################################################
211
212. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
213      ( ${DEBUG_debug} ) && IGCM_debug_Check
214. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
215     ( ${DEBUG_debug} ) && IGCM_card_Check
216. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
217     ( ${DEBUG_debug} ) && IGCM_date_Check
218#-------
219. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
220. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
221
222########################################################################
223
224#set -vx
225
226RUN_DIR=${RUN_DIR_PATH}
227IGCM_sys_MkdirWork ${RUN_DIR}
228IGCM_sys_Cd ${RUN_DIR}
229
230# ------------------------------------------------------------------
231# Test if all was right before proceeding further
232# ------------------------------------------------------------------
233IGCM_debug_Verif_Exit_Post
234
235#
236if [ ${RebuildFromArchive} = true ] ; then
237    ListAllRebuildDir=$( IGCM_sys_RshArchive ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
238else
239    ListAllRebuildDir=$( IGCM_sys_RshMaster ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
240fi
241#
242
243for directory in ${ListAllRebuildDir} ; do
244    #
245    if [ ${RebuildFromArchive} = true ] ; then
246        IGCM_sys_Get_Dir ${directory} ${RUN_DIR}
247    else
248        IGCM_sys_Get_Master ${directory} ${RUN_DIR}
249    fi
250    #
251    IGCM_sys_Cd ${RUN_DIR}/$( basename ${directory} )
252
253    # --------------------------------------------------------------------
254    # Source function include in the REBUILD ksh and rebuild
255    # --------------------------------------------------------------------
256    . ${RUN_DIR}/$( basename ${directory} )/rebuild.ksh
257    IGCM_FlushRebuild
258    #
259    IGCM_sys_Cd ${RUN_DIR}
260    # Clean Up
261    # local clean up
262    IGCM_sys_Rm -rf $( basename ${directory} )
263    # remote clean up
264    if [ ${RebuildFromArchive} = true ] ; then
265        IGCM_sys_RshArchive rm -rf ${directory}
266    else
267        IGCM_sys_Rm -rf ${directory}
268    fi
269done
270
271# Clean RUN_DIR_PATH (necessary for cesium only)
272IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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