source: branches/libIGCM_MPI_OpenMP/AA_rebuild_fromWorkdir

Last change on this file was 605, checked in by mafoipsl, 12 years ago

Tttttt use elapstim_req instead of cpu_time on mercure front-end.
  • Property svn:keywords set to Revision Author Date
File size: 11.4 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r REBUILDWRK     # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
14#-Q- curie #MSUB -r TS             # Nom du job               
15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
18#-Q- platine #!/usr/bin/ksh
19#-Q- platine ###################
20#-Q- platine ## PLATINE   CEA ##
21#-Q- platine ###################
22#-Q- platine #BSUB -J REBUILDWRK             # Nom du job
23#-Q- platine #BSUB -N                        # message a la fin du job
24#-Q- platine #BSUB -n 1                      # reservation des processeurs pour le job
25#-Q- platine #BSUB -W 4:00                   # Limite temps
26#-Q- platine #BSUB -q post                   # Passage en queue post
27#-Q- platine #BSUB -L /bin/ksh
28#-Q- sx8brodie #!/bin/ksh
29#-Q- sx8brodie #######################
30#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
31#-Q- sx8brodie #######################
32#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
33#-Q- sx8brodie # @ wall_clock_limit = 10:00:00
34#-Q- sx8brodie # Nom du travail LoadLeveler
35#-Q- sx8brodie # @ job_name   = REBUILDWRK
36#-Q- sx8brodie # Fichier de sortie standard du travail       
37#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
38#-Q- sx8brodie # Fichier de sortie d'erreur du travail
39#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
40#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
41#-Q- sx8brodie # @ notification = error
42#-Q- sx8brodie # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
43#-Q- sx8brodie # @ queue
44#-Q- aix6 #!/bin/ksh
45#-Q- aix6 #######################
46#-Q- aix6 ##   VARGAS   IDRIS  ##
47#-Q- aix6 #######################
48#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
49#-Q- aix6 # @ wall_clock_limit = 10:00:00
50#-Q- aix6 # Nom du travail LoadLeveler
51#-Q- aix6 # @ job_name   = REBUILDWRK
52#-Q- aix6 # Fichier de sortie standard du travail
53#-Q- aix6 # @ output     = $(job_name).$(jobid)
54#-Q- aix6 # Fichier de sortie d'erreur du travail
55#-Q- aix6 # @ error      =  $(job_name).$(jobid)
56#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
57#-Q- aix6 # @ notification = error
58#-Q- aix6 # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
59#-Q- aix6 # @ queue
60#-Q- ulam #!/bin/ksh
61#-Q- ulam #######################
62#-Q- ulam ##   VARGAS   IDRIS  ##
63#-Q- ulam #######################
64#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
65#-Q- ulam # @ wall_clock_limit = 10:00:00
66#-Q- ulam # Nom du travail LoadLeveler
67#-Q- ulam # @ job_name   = REBUILDWRK
68#-Q- ulam # Fichier de sortie standard du travail
69#-Q- ulam # @ output     = $(job_name).$(jobid)
70#-Q- ulam # Fichier de sortie d'erreur du travail
71#-Q- ulam # @ error      =  $(job_name).$(jobid)
72#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
73#-Q- ulam # @ notification = error
74#-Q- ulam # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
75#-Q- ulam # @ queue
76#-Q- sx8mercure #!/bin/ksh
77#-Q- sx8mercure ######################
78#-Q- sx8mercure ## SX8MERCURE   CEA ##
79#-Q- sx8mercure ######################
80#-Q- sx8mercure #PBS -N REBUILDWRK           # Nom du job
81#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
82#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
83#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
84#-Q- sx8mercure #PBS -l cputim_job=24:00:00  # Limite temps a 1 heures
85#-Q- sx8mercure #PBS -q scalaire
86#-Q- sx9mercure #!/bin/ksh
87#-Q- sx9mercure ######################
88#-Q- sx9mercure ## SX9MERCURE  CCRT ##
89#-Q- sx9mercure ######################
90#-Q- sx9mercure #PBS -N REBUILDWRK           # Nom du job
91#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
92#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
93#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
94#-Q- sx9mercure #PBS -l elapstim_req=24:00:00  # Limite temps a 1 heures
95#-Q- sx9mercure #PBS -q scalaire
96#-Q- titane #!/bin/ksh
97#-Q- titane ######################
98#-Q- titane ## TITANE   CEA     ##
99#-Q- titane ######################
100#-Q- titane #MSUB -r REBUILDWRK     # Nom du job               
101#-Q- titane #MSUB -eo
102#-Q- titane #MSUB -n 1              # Reservation du processus
103#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
104#-Q- titane #MSUB -q mono
105#-Q- lxiv8 ######################
106#-Q- lxiv8 ## OBELIX      LSCE ##
107#-Q- lxiv8 ######################
108#-Q- lxiv8 #PBS -N REBUILDWRK
109#-Q- lxiv8 #PBS -m a
110#-Q- lxiv8 #PBS -j oe
111#-Q- lxiv8 #PBS -q medium
112#-Q- lxiv8 #PBS -o REBUILDWRK.$$
113#-Q- lxiv8 #PBS -S /bin/ksh
114#-Q- default #!/bin/ksh
115#-Q- default ##################
116#-Q- default ## DEFAULT HOST ##
117#-Q- default ##################
118
119#**************************************************************
120# Author: Sebastien Denvil
121# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
122# $Revision::                                          $ Revision of last commit
123# $Author::                                            $ Author of last commit
124# $Date::                                              $ Date of last commit
125# IPSL (2006)
126#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
127#
128#**************************************************************
129
130#set -eu
131#set -vx
132
133date
134
135#-Q- sx8brodie export OMP_NUM_THREADS=1
136#-Q- aix6 export OMP_NUM_THREADS=1
137#-Q- ulam export OMP_NUM_THREADS=1
138
139########################################################################
140
141#D- Flag to determine if this job in a standalone mode
142#D- Default : value from AA_job if any
143StandAlone=${StandAlone:=true}
144
145#D- Path to libIGCM
146#D- Default : value from AA_job if any
147# WARNING For StandAlone use : To run this script on some machine (ulam and cesium)
148# WARNING you must check MirrorlibIGCM variable in sys library.
149# WARNING If this variable is true, you must use libIGCM_POST path instead
150# WARNING of your running libIGCM directory.
151libIGCM=${libIGCM:=::modipsl::/libIGCM}
152
153#-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer.
154MASTER=${MASTER:=mercure|titane|brodie|vargas}
155
156#D- Do we rebuild parallel output from archive or from ${BIGDIR}
157#D- Default : value from AA_job if any
158RebuildFromArchive=${RebuildFromArchive:=false}
159
160#D- Directory where files we need to rebuild are store
161#D- Default : value from AA_job if any
162#D- if RebuildFromArchive=true REBUILD_DIR=${DMFDIR}/IGCM_OUT/.../JobName/TMP
163#D- example : /dmnfs09/cont003/p86denv/IGCM_OUT/IPSLCM5/CM5PIRC7/TMP
164#D- if RebuildFromArchive=false REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/
165#D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW
166REBUILD_DIR=${REBUILD_DIR:=/path/to/your/TMP/REBUILD/FILES}
167
168#D- How many directory to rebuild we have to consider
169#D- Default : value from AA_job if any
170NbRebuildDir=${NbRebuildDir:=1000}
171
172#D- Suffix date we will use to determine which directory to rebuild
173#D- We will rebuild NbRebuildDir before and including PeriodDateBegin
174#D- Default : value from AA_job if any
175LastPeriodForRebuild=${LastPeriodForRebuild:=${PeriodDateBegin:=18901201}}
176
177#D- Flag to determine atlas job's output directory
178#D- Default : value from libIGCM_post.ksh if any
179POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}}
180
181#-D- libIGCM_SX contains libIGCM on Master computer. Required on some center. Always OK.
182libIGCM_SX=${libIGCM_SX:=::modipsl::/libIGCM}
183
184#D- Increased verbosity (1, 2, 3)
185#D- Default : value from AA_job if any
186Verbosity=${Verbosity:=3}
187
188#D- Low level debug : to bypass lib test checks and stack construction
189#D- Default : value from AA_job if any
190DEBUG_debug=${DEBUG_debug:=false}
191
192#D- TEMPORARY Flag to determine atmospheric resolution
193#D- Default : value from atmospheric driver if any
194RESOL_ATM=${RESOL_ATM:=ALL}
195
196#D- TEMPORARY Flag to determine ocean resolution
197#D- Default : value from ocean driver if any
198RESOL_OCE=${RESOL_OCE:=ORCA2}
199
200#D- TEMPORARY Flag to determine ice resolution
201#D- Default : value from ice driver if any
202RESOL_ICE=${RESOL_ICE:=ORCA2}
203
204#D- TEMPORARY Flag to determine biogeochemistry resolution
205#D- Default : value from ice driver if any
206RESOL_MBG=${RESOL_MBG:=ORCA2}
207
208#D- Flag to determine surface resolution
209#D- Default : value from surface driver if any
210RESOL_SRF=ALL
211
212#D- Flag to determine surface resolution
213#D- Default : value from surface driver if any
214RESOL_SBG=ALL
215
216########################################################################
217
218. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
219      ( ${DEBUG_debug} ) && IGCM_debug_Check
220. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
221     ( ${DEBUG_debug} ) && IGCM_card_Check
222. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
223     ( ${DEBUG_debug} ) && IGCM_date_Check
224#-------
225. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
226. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
227
228########################################################################
229
230#set -vx
231
232RUN_DIR=${RUN_DIR_PATH}
233IGCM_sys_MkdirWork ${RUN_DIR}
234IGCM_sys_Cd ${RUN_DIR}
235
236# ------------------------------------------------------------------
237# Test if all was right before proceeding further
238# ------------------------------------------------------------------
239IGCM_debug_Verif_Exit_Post
240
241#
242if [ ${RebuildFromArchive} = true ] ; then
243    ListAllRebuildDir=$( IGCM_sys_RshArchive ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
244else
245    ListAllRebuildDir=$( IGCM_sys_RshMaster ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
246fi
247#
248
249for directory in ${ListAllRebuildDir} ; do
250    #
251    if [ ${RebuildFromArchive} = true ] ; then
252        IGCM_sys_Get_Dir ${directory} ${RUN_DIR}
253    else
254        IGCM_sys_Get_Master ${directory} ${RUN_DIR}
255    fi
256    #
257    IGCM_sys_Cd ${RUN_DIR}/$( basename ${directory} )
258
259    # --------------------------------------------------------------------
260    # Source function include in the REBUILD ksh and rebuild
261    # --------------------------------------------------------------------
262    . ${RUN_DIR}/$( basename ${directory} )/rebuild.ksh
263    IGCM_FlushRebuild
264    #
265    IGCM_sys_Cd ${RUN_DIR}
266    # Clean Up
267    # local clean up
268    IGCM_sys_Rm -rf $( basename ${directory} )
269    # remote clean up
270    if [ ${RebuildFromArchive} = true ] ; then
271        IGCM_sys_RshArchive rm -rf ${directory}
272    else
273        IGCM_sys_RshMaster rm -rf ${directory}
274    fi
275done
276
277# Clean RUN_DIR_PATH (necessary for cesium and titane only)
278IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
279
280date
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